RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15247
(203 letters)
>gnl|CDD|238645 cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc
dependent enzyme which catalyzes the irreversible
hydrolytic deamination of both adenosine, as well as
desoxyadenosine, to ammonia and inosine or
desoxyinosine, respectively. ADA plays an important role
in the purine pathway. Low, as well as high levels of
ADA activity have been linked to several diseases.
Length = 325
Score = 76.5 bits (189), Expect = 8e-17
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR 69
+ ER AYE++ED + + V Y E+R+ P L E V V +GL
Sbjct: 67 TEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGL-------SFDEVVEAVLRGLDE 119
Query: 70 GEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
E EF +K++ IL ++ +TL LA GVVG DL
Sbjct: 120 AEAEFGIKARLILCGLRHLSPESAQETLELALKYRDKGVVGFDL 163
Score = 73.0 bits (180), Expect = 2e-15
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSW-GFTREQFKIINLNAAEASFQPEHEK 189
++ ++N+DDPT+ G YL ++Y+L G T E+ K + NA EASF E EK
Sbjct: 259 RELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKLARNAVEASFLSEEEK 318
Query: 190 KELIKLL 196
EL+K +
Sbjct: 319 AELLKRI 325
>gnl|CDD|233410 TIGR01430, aden_deam, adenosine deaminase. This family includes
the experimentally verified adenosine deaminases of
mammals and E. coli. Other members of this family are
predicted also to be adenosine deaminase, an enzyme of
nucleotide degradation. This family is distantly related
to AMP deaminase.
Length = 324
Score = 68.9 bits (169), Expect = 5e-14
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSW-GFTREQFKIINLNAAEASFQPEHEK 189
++F + +LNSDDP G YL E+Y++A G T E+ K + NA E SF + EK
Sbjct: 258 RRFLEAGVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLTEEELKQLARNALEGSFLSDDEK 317
Query: 190 KELIKLL 196
KEL+ L
Sbjct: 318 KELLAKL 324
Score = 67.8 bits (166), Expect = 1e-13
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 4 GAFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRV 63
G + D +R AYE++E +K+ V Y EV + P L+ G V V
Sbjct: 60 GVEVLRTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQ------LHTNRGIS-PDTVVEAV 112
Query: 64 YQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPH 123
GL E +F +KS+ IL + +TL LA+ +VG L + P
Sbjct: 113 LDGLDEAERDFGIKSRLILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGDERGGPPP 172
Query: 124 GSVYSYNQ 131
V ++
Sbjct: 173 DFVRAFAI 180
>gnl|CDD|216216 pfam00962, A_deaminase, Adenosine/AMP deaminase.
Length = 328
Score = 67.4 bits (165), Expect = 2e-13
Identities = 37/131 (28%), Positives = 50/131 (38%), Gaps = 7/131 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQG 66
LR R+AYE ED + + V Y+E R+ P + G V V G
Sbjct: 66 LRWTAQDPRRYAYEAAEDFAADGVVYLENRFDPLF-----EATLDGQSPELHVVLAVKDG 120
Query: 67 LKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSV 126
GE EF + ++ IL P + + + LA YGVV IDL E G
Sbjct: 121 FDEGEREFGIGARLILCKIRHKPEEWLEEIAELATYYRDYGVVNIDLAG--DEIGEPLPD 178
Query: 127 YSYNQKFAKDN 137
+ Y A
Sbjct: 179 FLYAFAEAGKY 189
Score = 66.2 bits (162), Expect = 4e-13
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLA-QSWGFTREQFKIINLNAAEASFQPEHEK 189
+ F SL++DDP G L+E+Y +A Q +G E + N+ ++SF + EK
Sbjct: 263 KTFFDAGVPVSLSTDDPLQFGATLSEEYTIAAQDFGLDTEDLCELARNSVKSSFLSDDEK 322
Query: 190 KELIK 194
L+
Sbjct: 323 AALLG 327
>gnl|CDD|236480 PRK09358, PRK09358, adenosine deaminase; Provisional.
Length = 340
Score = 60.6 bits (148), Expect = 4e-11
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 141 SLNSDDPTLTGRYLNEDYQLAQSW-GFTREQFKIINLNAAEASFQPEHEKKELIKLLE 197
++N+DDP + G L E+Y+ G + E + NA EA+F E EK L+ ++
Sbjct: 278 TINTDDPLVFGTTLTEEYEALAEAFGLSDEDLAQLARNALEAAFLSEEEKAALLAEVD 335
Score = 58.3 bits (142), Expect = 3e-10
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR 69
+ + R A+E++ED + + V Y E+R+ P +L+ G L+E V V GL+
Sbjct: 75 TEEDLRRLAFEYLEDAAADGVVYAEIRFDP------QLHTERGL-PLEEVVEAVLDGLRA 127
Query: 70 GEDEFQVKSKSILSCATKWPVDTVPDTL-RLAQNCTHYGVVGIDL 113
E EF + + IL + + L LA GVVG DL
Sbjct: 128 AEAEFGISVRLILCFMRHFGEEAAARELEALAARYRDDGVVGFDL 172
>gnl|CDD|224729 COG1816, Add, Adenosine deaminase [Nucleotide transport and
metabolism].
Length = 345
Score = 58.1 bits (141), Expect = 3e-10
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRG 70
+ R AYE++ED + +NV Y E+R+ P + L + + E + G +
Sbjct: 80 EEDFYRLAYEYLEDAAADNVVYAEIRFDP----YLHTKRGLSVDTVVEGLIA---GFRPA 132
Query: 71 EDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETGPHGSVYSYN 130
E +F + SK I+ ++ + L LA V G+ L E+G ++
Sbjct: 133 ERDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVTGVGLAG--SESGYPPELFVSL 190
Query: 131 QKFAKDN 137
K A+DN
Sbjct: 191 FKLARDN 197
Score = 47.7 bits (114), Expect = 1e-06
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSW-GFTREQFKIINLNAAEASFQPEHEK 189
+K SLN+DDP G L E+Y +A G +RE + NA EA+F E EK
Sbjct: 271 KKLFDAGVKVSLNTDDPLYFGTPLIEEYLVAAQIYGLSREDLCELARNAVEAAFISEEEK 330
Query: 190 KELI 193
L+
Sbjct: 331 AALL 334
>gnl|CDD|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase. Adenosine deaminases
(ADAs) are present in pro- and eukaryotic organisms and
catalyze the zinc dependent irreversible deamination of
adenosine nucleosides to inosine nucleosides and
ammonia. The eukaryotic AMP deaminase catalyzes a
similar reaction leading to the hydrolytic removal of an
amino group at the 6 position of the adenine nucleotide
ring, a branch point in the adenylate catabolic pathway.
Length = 305
Score = 55.0 bits (133), Expect = 3e-09
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQL-AQSWGFTREQFKIINLNAAEASFQPEHEKK 190
+F K SL++DDP + G L+E+Y L A+++G T E +N N+ +SF + EKK
Sbjct: 240 RFFKAGLPVSLSTDDPGIFGTSLSEEYSLAAKTFGLTFEDLCELNRNSVLSSFAKDEEKK 299
Query: 191 ELIKLL 196
L+++L
Sbjct: 300 SLLEVL 305
Score = 50.8 bits (122), Expect = 9e-08
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQG 66
L +A+ R E IE+ +++NV Y+E+R P L + Y V +G
Sbjct: 37 LLQKGEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKEQY------WLLVIEG 90
Query: 67 LKRGEDEF-QVKSKSILSCATKWPVDTVP----DTLRLA---QNCTHYGVVGIDLLSIQP 118
+ + F +K + ILS + P + L LA N VVGID L
Sbjct: 91 ISEAKQWFPPIKVRLILSVDRRGPYVQNYLVASEILELAKFLSN----YVVGID-LVGDE 145
Query: 119 ETGP 122
G
Sbjct: 146 SKGE 149
>gnl|CDD|173415 PTZ00124, PTZ00124, adenosine deaminase; Provisional.
Length = 362
Score = 36.8 bits (85), Expect = 0.005
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 141 SLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASFQPEHEKKELIKL 195
S+NSDDP + +N+DY+ L FT F +N A E SF + K ++ KL
Sbjct: 305 SVNSDDPGMFLTNINDDYEELYTHLNFTLADFMKMNEWALEKSFLDKDIKLKIKKL 360
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 36.1 bits (84), Expect = 0.007
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 134 AKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQ-FKIINLNAAEA 181
K F+++SD P L R LN + A +G + E+ K I +N A+
Sbjct: 268 KKGGVAFAISSDHPVLNIRNLNLEAAKAVKYGLSYEEALKAITINPAKI 316
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336). This
family represents the C-terminus (approximately 250
residues) of a number of hypothetical plant proteins of
unknown function.
Length = 215
Score = 30.7 bits (70), Expect = 0.34
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 116 IQPETGPHGSVYSYNQKFA-KDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKII 174
IQ G S+ Y FA ++ L+ +L R+++ D F E+ KII
Sbjct: 71 IQVPGGEGYSLVLY---FALEEPVEKELSPAFGSLLRRFVDGDED-----AFRNERLKII 122
>gnl|CDD|226073 COG3543, COG3543, Uncharacterized conserved protein [Function
unknown].
Length = 135
Score = 28.6 bits (64), Expect = 1.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 35 VRYMPHKLLGTELYQMLGY-EGLKETVRRVYQGLKRGED 72
+R H LL + YQ GY E + + LK GED
Sbjct: 3 LRLRAHHLLCMQGYQGKGYSPAFVENYDAIAERLKAGED 41
>gnl|CDD|236710 PRK10534, PRK10534, L-threonine aldolase; Provisional.
Length = 333
Score = 29.3 bits (66), Expect = 1.3
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 113 LLSIQP---ETGPHGSVYSYN--QKFAKDNANFS---LNSDDPTLTGRYLNEDYQLAQSW 164
L SIQP + G++ K D+ +F+ L S + T G+ L +Y L Q+W
Sbjct: 95 LGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPREY-LKQAW 153
Query: 165 GFTREQ 170
FTRE+
Sbjct: 154 EFTRER 159
>gnl|CDD|235456 PRK05425, PRK05425, asparagine synthetase AsnA; Provisional.
Length = 327
Score = 28.6 bits (65), Expect = 1.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 56 LKETVRRVYQGLKRGEDEFQVK 77
LKETV ++Y+ +K E K
Sbjct: 135 LKETVEKIYKAIKATEKAVSKK 156
>gnl|CDD|218463 pfam05141, DIT1_PvcA, Pyoverdine/dityrosine biosynthesis protein.
This family includes DIT1 that is involved in
synthesising dityrosine. Dityrosine is a
sporulation-specific component of the yeast ascospore
wall that is essential for the resistance of the spores
to adverse environmental conditions. P. aeruginosa pvcA
is involved in the biosynthesis of pyoverdine.
Length = 274
Score = 28.0 bits (63), Expect = 3.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 133 FAKDNANFS--LNSDDPTLT---G--RYLNEDYQLAQSWGFTREQFK 172
+A DN + + SD+ TL G R+L ED L G +++ K
Sbjct: 138 YATDNEDLRAEIKSDEDTLLLYRGYTRFLYEDLLLPPFQGGSKKALK 184
>gnl|CDD|217359 pfam03081, Exo70, Exo70 exocyst complex subunit. The Exo70 protein
forms one subunit of the exocyst complex. First
discovered in S. cerevisiae, Exo70 and other exocyst
proteins have been observed in several other eukaryotes,
including humans. In S. cerevisiae, the exocyst complex
is involved in the late stages of exocytosis, and is
localised at the tip of the bud, the major site of
exocytosis in yeast. Exo70 interacts with the Rho3
GTPase. This interaction mediates one of the three known
functions of Rho3 in cell polarity: vesicle docking and
fusion with the plasma membrane (the other two functions
are regulation of actin polarity and transport of
exocytic vesicles from the mother cell to the bud). In
humans, the functions of Exo70 and the exocyst complex
are less well characterized: Exo70 is expressed in
several tissues and is thought to also be involved in
exocytosis.
Length = 357
Score = 27.3 bits (61), Expect = 5.3
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 28 NNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSC 84
NN+ Y+ K+ +EL +LG + +RR+ + +K+ + +LS
Sbjct: 214 NNLHYIL-----QKVRRSELKSLLGDDW----IRRLEKKVKQYATLYLRSWGPVLSL 261
>gnl|CDD|217412 pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD
proteins from a number of bacteria, in Salmonella this
protein is called Cbib. Salmonella CobD is a different
protein. This protein is involved in cobalamin
biosynthesis and is probably an enzyme responsible for
the conversion of adenosylcobyric acid to
adenosylcobinamide or adenosylcobinamide phosphate.
Length = 295
Score = 27.1 bits (61), Expect = 6.4
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 47 LYQMLGYEGLKETVRRVYQGLKRG 70
L L L + R V + L+ G
Sbjct: 86 LKTTLALRSLADHARAVARALEAG 109
>gnl|CDD|192911 pfam12002, MgsA_C, MgsA AAA+ ATPase C terminal. The MgsA protein
possesses DNA-dependent ATPase and ssDNA annealing
activities. MgsA contributes to the recovery of stalled
replication forks and therefore prevents genomic
instability caused by aberrant DNA replication.
Additionally, MgsA may play a role in chromosomal
segregation. This is consistent with a report that MgsA
co-localises with the replisome and affects chromosome
segregation. This domain represents the C terminal
region of MgsA.
Length = 168
Score = 26.6 bits (60), Expect = 7.8
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 31 AYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR 69
YV +Y+P +L G Y+ G ++ ++ + L++
Sbjct: 131 GYVGQQYLPDELKGKRYYE-PTERGFEKKIKERLEKLRK 168
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 27.1 bits (60), Expect = 7.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 42 LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVK 77
LL T++YQ+L KE VR + + + E+E +
Sbjct: 391 LLQTKMYQILPISEAKEMVRLLLYPMVKEEEEIATE 426
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 26.9 bits (59), Expect = 9.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 57 KETVRRVYQGLKRGEDEFQVKSKS 80
K ++V + L R +DE+ +S S
Sbjct: 24 KHAAKKVNKALDRAQDEYSQRSYS 47
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 26.6 bits (59), Expect = 9.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 42 LLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQVKSKSILSCATKW-------PVDTVP 94
L+ E+Y L Y +V L+ +D F + S S T W P VP
Sbjct: 201 LVVDEIYHGLTYGVDAASV------LEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVP 254
Query: 95 DTLRLAQN 102
+ +LAQN
Sbjct: 255 ELEKLAQN 262
>gnl|CDD|215000 smart01057, Carb_anhydrase, Eukaryotic-type carbonic anhydrase.
Carbonic anhydrases are zinc metalloenzymes which
catalyse the reversible hydration of carbon dioxide to
bicarbonate.. CAs have essential roles in facilitating
the transport of carbon dioxide and protons in the
intracellular space, across biological membranes and in
the layers of the extracellular space; they are also
involved in many other processes, from respiration and
photosynthesis in eukaryotes to cyanate degradation in
prokaryotes. There are five known evolutionarily
distinct CA families (alpha, beta, gamma, delta and
epsilon) that have no significant sequence identity and
have structurally distinct overall folds. Some CAs are
membrane-bound, while others act in the cytosol; there
are several related proteins that lack enzymatic
activity. The active site of alpha-CAs is well
described, consisting of a zinc ion coordinated through
3 histidine residues and a water molecule/hydroxide ion
that acts as a potent nucleophile. The enzyme employs a
two-step mechanism: in the first step, there is a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide; in the second step, the active site is
regenerated by the ionisation of the zinc-bound water
molecule and the removal of a proton from the active
site. Beta- and gamma-CAs also employ a zinc hydroxide
mechanism, although at least some beta-class enzymes do
not have water directly coordinated to the metal ion.
Length = 247
Score = 26.5 bits (59), Expect = 9.8
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 127 YSYNQKFAKDNAN------FSLNSDDPTLTGRYLNEDYQLAQ 162
SY+Q AK N + + D TL+G L Y+L Q
Sbjct: 46 LSYDQPTAKRILNNGHTVQVNFDDDGSTLSGGPLPGRYRLKQ 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,282,023
Number of extensions: 940412
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 29
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)