RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15247
(203 letters)
>3iar_A Adenosine deaminase; purine metabolism structural genomics,
structural genomics consortium, SGC, D mutation,
hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A
{Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A*
1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A*
1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A*
3mvi_A 1a4l_A* ...
Length = 367
Score = 85.4 bits (212), Expect = 5e-20
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASFQPEHEKK 190
+ D AN+SLN+DDP + L+ DYQ + GFT E+FK +N+NAA++SF PE EK+
Sbjct: 279 RLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKR 338
Query: 191 ELIKLLESEY 200
EL+ LL Y
Sbjct: 339 ELLDLLYKAY 348
Score = 78.9 bits (195), Expect = 1e-17
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 4 GAFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYE-----GLKE 58
+ G +A++R AYEF+E +K V YVEVRY PH L +++ + + E
Sbjct: 66 MPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDE 125
Query: 59 TVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQP 118
V V QGL+ GE +F VK++SIL C P + P + L + VV IDL
Sbjct: 126 VVALVGQGLQEGERDFGVKARSILCCMRHQPNWS-PKVVELCKKYQQQTVVAIDLAG--D 182
Query: 119 ETG-PHGSVYSYNQKFAK 135
ET + + Q + +
Sbjct: 183 ETIPGSSLLPGHVQAYQE 200
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical ST genomics of pathogenic protozoa
consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium
vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Length = 371
Score = 78.8 bits (195), Expect = 1e-17
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASFQPEHEKK 190
+ S+NSDDP + +N+DY+ L FT E F +N A E SF + K
Sbjct: 305 QLYDAGVKVSVNSDDPGMFLTNINDDYEELYTHLNFTLEDFMKMNEWALEKSFMDSNIKD 364
Query: 191 ELIKLL 196
++ L
Sbjct: 365 KIKNLY 370
Score = 72.3 bits (178), Expect = 3e-15
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGL--KETVRRVYQG 66
D + +E A + + K V +E RY P + + L + + + +G
Sbjct: 108 HDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPT-FVAFK-------YNLDIELIHQAIVKG 159
Query: 67 LKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHY-GVVGIDL 113
+K + K L C + H VG D
Sbjct: 160 IKEVVELLDHKIHVALMCIGDTGHEAANIKASADFCLKHKADFVGFDH 207
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 74.2 bits (183), Expect = 4e-16
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASFQPEHEKK 190
+ N +NSDDP G Y++++++ L + F+ + + N+ +SF + K
Sbjct: 267 EMLAIGLNVCVNSDDPAYFGGYVDDNFEQLVKVLEFSVPEQATLAANSIRSSFASDARKA 326
Query: 191 ELIKLLE 197
L+ +
Sbjct: 327 VLLDEVT 333
Score = 68.8 bits (169), Expect = 3e-14
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR 69
++E + V + E+ P + + G L+ V V L
Sbjct: 75 TEQDFTDMTRAYLERAAAGGVRHAEIMMDP------QAHTSRGV-ALETCVNGVANALAT 127
Query: 70 GEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDL 113
E++F V + I + D+ + L + GI L
Sbjct: 128 SEEDFGVSTLLIAAFLRDMSEDSALEVLDQLLAMHA-PIAGIGL 170
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas
aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 69.5 bits (171), Expect = 2e-14
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASFQPEHEKK 190
+ ++NSDDP G Y+ E++ L QS G T EQ + + N+ +A E
Sbjct: 264 DMLERGVKVTVNSDDPAYFGGYVTENFHALQQSLGMTEEQARRLAQNSLDARLVKEGHHH 323
Query: 191 EL 192
Sbjct: 324 HH 325
Score = 68.0 bits (167), Expect = 6e-14
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR 69
+ +++ C NV +VE + P + + + + L+
Sbjct: 72 TEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGI-------PFEVVLAGIRAALRD 124
Query: 70 GEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPETG 121
GE ++ ILS + TL A + + L S E G
Sbjct: 125 GEKLLGIRHGLILSFLRHLSEEQAQKTLDQALPFRD-AFIAVGLDS--SEVG 173
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor
binding domains, glyco hydrolase, growth factor,
secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Length = 508
Score = 53.8 bits (129), Expect = 6e-09
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 132 KFAKDNANFSLNSDDPTLTGRY-LNEDY-QLAQSWGFTR---EQFKIINLNAAEASFQPE 186
++SDDP + G L+ D+ ++ G + K + +N+ + S E
Sbjct: 402 TLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLE 461
Query: 187 HEKKELIKLLESEY 200
EK +++ + +
Sbjct: 462 SEKNTFMEIWKKRW 475
Score = 49.9 bits (119), Expect = 1e-07
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 10 DLDAVERFAYEFIEDCSKNNVAYVEVRYMP---HKLLGTELYQMLGYEGLKETVRRVYQG 66
+ + +++ ++NV Y+E+R ++L G + + +E ++
Sbjct: 194 YAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQK---F 250
Query: 67 LKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYG---VVGIDL 113
++ + + K I S V + +++R+A V G DL
Sbjct: 251 VETHPEFIGI--KIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDL 298
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 53.5 bits (128), Expect = 1e-08
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 132 KFAKDNANFSLNSDDPTL---TGRYLNEDYQ-LAQSWGFTREQFKIINLNAAEASFQPEH 187
F N SL++DDP T L E+Y A W + I N+ S
Sbjct: 585 VFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHA 644
Query: 188 EKKELI 193
K I
Sbjct: 645 LKSHWI 650
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 8e-04
Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 48/203 (23%)
Query: 3 VGAFLRGDLDAVERFAYEFIE------DCSKNNVAYVEVRYMPHKLLGTELYQMLGY--E 54
+ +R L + + + + + S N + E R +++ L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---------KMFDRLSVFPP 383
Query: 55 GLK---ETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGI 111
+ ++ + + + V S K P ++ + I
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST------------ISIPSI 431
Query: 112 DL-LSIQPETGP--HGS-VYSYNQKFAKDNANFSLNSDDP---TLTGRYLNEDYQLAQSW 164
L L ++ E H S V YN D+ + D + G +L + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-IEHPERM 490
Query: 165 GFTREQF--------KIINLNAA 179
R F KI + + A
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTA 513
Score = 28.7 bits (63), Expect = 1.6
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 29/133 (21%)
Query: 12 DAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKR-G 70
D + F F+++ + V+ L E+ ++ + R++ L
Sbjct: 20 DILSVFEDAFVDNF---DCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 71 EDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQPE------TGPHG 124
E+ Q + +L K+ + + QP
Sbjct: 76 EEMVQKFVEEVLRINYKFLMS------PIKTEQ------------RQPSMMTRMYIEQRD 117
Query: 125 SVYSYNQKFAKDN 137
+Y+ NQ FAK N
Sbjct: 118 RLYNDNQVFAKYN 130
Score = 26.7 bits (58), Expect = 7.7
Identities = 28/207 (13%), Positives = 53/207 (25%), Gaps = 62/207 (29%)
Query: 11 LDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRG 70
L E +F+E+ + N Y+ L ++ +
Sbjct: 72 LSKQEEMVQKFVEEVLRIN-----------------------YKFLMSPIKTEQRQPSMM 108
Query: 71 EDEFQVKSKSILSCATKWPVDTVP-----DTLRLAQNCTHYGVVGIDLLSIQPETG--PH 123
+ + + + + V LR A LL ++P
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------------LLELRPAKNVLID 156
Query: 124 G------SV------YSYNQKFAKDNA----NFSLNSDDPTLTGRYLNEDYQLAQSWGFT 167
G + SY + D N + T+ YQ+ +W
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 168 REQFKIINLNAAEASFQPEHEKKELIK 194
+ I L + E + L+K
Sbjct: 217 SDHSSNIKLRIHSI----QAELRRLLK 239
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 36.6 bits (84), Expect = 0.004
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 132 KFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQ-FKIINLNAAEA 181
K KD +L D P + + A +G E KI+ +N A+
Sbjct: 293 KLLKDGVLIALMCDHPVIPLEFATVQAATAMRYGAKEEDLLKILTVNPAKI 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.009
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 40/124 (32%)
Query: 111 IDLLSIQPETGPHGSV-----------YSYNQ---KFAKD--NANFSLNSDD-PT----L 149
+D S +P T HGS+ + +Q +F K +DD PT L
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 150 TGRYLN------EDYQLAQS--------WGFTREQFKIINLNAAEASFQPEHE-----KK 190
G++L E ++ Q F + +++A A E++ K
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 191 ELIK 194
ELIK
Sbjct: 121 ELIK 124
>2qkw_A Avirulence protein; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Pseudomonas syringae} SCOP: a.8.8.1 PDB: 1r5e_A
Length = 164
Score = 33.4 bits (75), Expect = 0.027
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 130 NQKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKIINLNAAEASFQPEH 187
+Q + D + + +D + + L+ +QLA+S G R+Q + ++ + A S + +
Sbjct: 13 HQVNSPDRVSNNSGDEDNVTSSQLLSVRHQLAESAGLPRDQHEFVS-SQAPQSLRNRY 69
>1cp9_B Penicillin amidohydrolase; antibiotic resistance, NTN-hydrolase
fold, N-terminal pyroglutamate, penicillin binding
protein; 2.50A {Providencia rettgeri} SCOP: d.153.1.2
Length = 553
Score = 29.6 bits (66), Expect = 0.66
Identities = 11/81 (13%), Positives = 23/81 (28%)
Query: 122 PHGSVYSYNQKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKIINLNAAEA 181
G + ++N AK+ L + R D ++ T + I +
Sbjct: 233 KSGYIANWNNSPAKNYPASDLFAFLWGSADRVKEIDNRIEAYDKLTADDMWAILQQTSRV 292
Query: 182 SFQPEHEKKELIKLLESEYSD 202
L + + S+
Sbjct: 293 DLNHRLFTPFLTQATQGLPSN 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.2
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 4/18 (22%)
Query: 188 EKKELIKLLESE---YSD 202
EK+ L K L++ Y+D
Sbjct: 18 EKQALKK-LQASLKLYAD 34
Score = 25.7 bits (55), Expect = 9.8
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 21/48 (43%)
Query: 57 KETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCT 104
K+ ++++ LK + D+ P LA T
Sbjct: 19 KQALKKLQASLK------------------LYADDSAP---ALAIKAT 45
>1yue_A Head vertex protein GP24; bacteriophage T4, capsid protein,
bacteriophage, virus, HK97, MAD, viral protein; 2.90A
{Enterobacteria phage T4}
Length = 427
Score = 28.7 bits (62), Expect = 1.4
Identities = 7/54 (12%), Positives = 13/54 (24%)
Query: 112 DLLSIQPETGPHGSVYSYNQKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWG 165
D+++ Q P + Y + F + G E
Sbjct: 38 DIVATQRTNQPVAAFYGIKYLNPDNEFTFKTGATYAGEAGYVDREQITELTEES 91
>2iqc_A Protein FACF, fanconi anemia group F protein; heat-like repeat,
DNA-damage, complex subunit, protein binding; 2.40A
{Homo sapiens}
Length = 210
Score = 27.9 bits (61), Expect = 2.1
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 5 AFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQML--GYEGLKETVRR 62
A L + + D K E + +P + L +Q L LK+ V
Sbjct: 122 ALSPVYLGLLTDWGQRLHYDLQKGIWVGTESQDVPWEEL-HNRFQSLCQAPPPLKDKVLT 180
Query: 63 VYQGLKRGEDEFQVKSKSI 81
+ K + +F+V SI
Sbjct: 181 ALETCKAQDGDFEVPGLSI 199
>1gk9_B Penicillin G acylase beta subunit; antibiotic resistance, amidase,
NTN-hydrolase,; 1.3A {Escherichia coli} SCOP: d.153.1.2
PDB: 1gm9_B* 1k7d_B* 1pnk_B 1pnl_B* 1pnm_B* 1e3a_B
1kec_B* 1h2g_B 1ajq_B* 1ai5_B* 1ai6_B* 1ai7_B 1ajn_B*
1ai4_B* 1ajp_B* 1gkf_B 1gm7_B* 1gm8_B* 1fxh_B* 1fxv_B*
...
Length = 557
Score = 28.1 bits (62), Expect = 2.1
Identities = 12/81 (14%), Positives = 19/81 (23%)
Query: 122 PHGSVYSYNQKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKIINLNAAEA 181
G + ++N KD L + R D L Q T +Q + +
Sbjct: 233 QSGYIANWNNSPQKDYPASDLFAFLWGGADRVTEIDRLLEQKPRLTADQAWDVIRQTSRQ 292
Query: 182 SFQPEHEKKELIKLLESEYSD 202
L
Sbjct: 293 DLNLRLFLPTLQAATSGLTQS 313
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 27.7 bits (61), Expect = 2.7
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 110 GIDLLSIQPETGPHGSVYSY-----NQKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSW 164
G L + GP G V SY K A +N ++ D T+ + +
Sbjct: 105 GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI--------YE 156
Query: 165 GFTREQFKIINLNAAEASFQPEHEKKEL 192
G E + L+ + EH K L
Sbjct: 157 GIEEENVDHVILDLPQPERVVEHAAKAL 184
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A
{Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Length = 330
Score = 27.8 bits (62), Expect = 2.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 56 LKETVRRVYQGLKRGEDE 73
LK TV ++ G+K E
Sbjct: 133 LKSTVEAIWAGIKATEAA 150
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 26.5 bits (58), Expect = 6.2
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 37 YMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDE-----FQVKSKSILSCATKWPVD 91
Y+P ++LGT Y + L+ + ++ G+ + F K + + T + +
Sbjct: 276 YLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYIT 335
Query: 92 TVPDTLRLAQ-NCTHYGVVGID 112
R CTH V +
Sbjct: 336 YHQWNSRPEFIVCTHTVVSYAE 357
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 26.6 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 86 TKWPVDTVPDTLRLAQNCTHYG-VVGIDLLSIQPETGPHGSVY 127
T W V P+ LR H G +V L++ P G+V
Sbjct: 496 TAWDVRQAPEALRHLSQARHVGKLV----LTMPPVWDAAGTVL 534
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 26.2 bits (58), Expect = 9.1
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 9 GDLDAVERFAYEFIEDCSKNNVAYVEVRYMPH------KLLGTELYQMLGYEGLKETVRR 62
G ++A R A +F E+ ++ Y +VR + ++ + + G + +
Sbjct: 422 GVMEAALRSAKDFAENAELEDIEYKQVRGLNGIKEAEVEINNNKYNVAVIN-GASN-LFK 479
Query: 63 VYQGLKRGEDEFQ 75
+ E ++
Sbjct: 480 FMKSGMINEKQYH 492
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,086,581
Number of extensions: 174333
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 34
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)