RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15247
(203 letters)
>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 349
Score = 72.6 bits (177), Expect = 6e-16
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 13/194 (6%)
Query: 17 FAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQGLKRGEDEFQV 76
++ E +E C K N V + G+ E + G+ R +V
Sbjct: 158 WSLEVLELCKKYNQKTVVAMDLAGDETIEGSSLFPGHVEAYEGAVK--NGIHRTVHAGEV 215
Query: 77 -KSKSILSCATKWPVDTVPDTLRLAQN---CTHYGVVGIDLLSIQPETGPHGSVYSYNQ- 131
+ + + V ++ + + P + +
Sbjct: 216 GSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENMHF-EVCPWSSYLTGAWDPKTT 274
Query: 132 ----KFAKDNANFSLNSDDPTLTGRYLNEDYQLA-QSWGFTREQFKIINLNAAEASFQPE 186
+F D AN+SLN+DDP + L+ DYQ+ + GFT E+FK +N+NAA++SF PE
Sbjct: 275 HAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPE 334
Query: 187 HEKKELIKLLESEY 200
EKKEL++ L EY
Sbjct: 335 EEKKELLERLYREY 348
Score = 48.7 bits (115), Expect = 1e-07
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 3 VGAFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPH-----KLLGTELYQMLGYEGLK 57
+ G +A++R AYEF+E +K V YVEVRY PH K+ Q G
Sbjct: 65 YMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPD 124
Query: 58 ETVRRVYQGLKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTHYGVVGIDLLSIQ 117
+ V V QGL+ GE F +K +SIL C + + L L + VV +DL
Sbjct: 125 DVVDLVNQGLQEGEQAFGIKVRSILCC-MRHQPSWSLEVLELCKKYNQKTVVAMDLAG-D 182
Query: 118 PETGPHGSVYSYNQKFAK 135
+ + +
Sbjct: 183 ETIEGSSLFPGHVEAYEG 200
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 69.1 bits (168), Expect = 1e-14
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 131 QKFAKDNANFSLNSDDPTLTGRYLNEDYQLA-QSWGFTREQFKIINLNAAEASFQPEHEK 189
+K S+NSDDP + +N++Y+ FT E+F I+N A E SF + K
Sbjct: 290 RKLYDAGVKVSVNSDDPGMFLSNINDNYEKLYIHLNFTLEEFMIMNNWAFEKSFVSDDVK 349
Query: 190 KELIKL 195
EL L
Sbjct: 350 SELKAL 355
Score = 33.3 bits (75), Expect = 0.014
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 7/124 (5%)
Query: 7 LRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQMLGYEGLKETVRRVYQG 66
L D D +E A + + K V +E RY P + + + + + +G
Sbjct: 92 LYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDV------ELIHKAFIKG 145
Query: 67 LKRGEDEFQVKSKSILSCATKWPVDTVPDTLRLAQNCTH-YGVVGIDLLSIQPETGPHGS 125
+K + K L C + H + VG D + + H
Sbjct: 146 IKNATELLNNKIHVALICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKD 205
Query: 126 VYSY 129
VY
Sbjct: 206 VYHS 209
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 49.6 bits (118), Expect = 7e-08
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 132 KFAKDNANFSLNSDDPTL---TGRYLNEDYQLA-QSWGFTREQFKIINLNAAEASFQPEH 187
F N SL++DDP T L E+Y +A W + I N+ S
Sbjct: 512 VFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHA 571
Query: 188 EKKELI 193
K I
Sbjct: 572 LKSHWI 577
Score = 27.6 bits (61), Expect = 1.1
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 1 LSVGAFLRGDLDAVERFAYEFIEDCSKNNVAYVEVRYMPHKLLGTELYQM 50
L ++G + D + E R + +E Q+
Sbjct: 269 LKQDNLIQGRFLG--EITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQL 316
>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179
{Unidentified organism [TaxId: 32644]}
Length = 311
Score = 28.1 bits (60), Expect = 0.84
Identities = 7/59 (11%), Positives = 19/59 (32%)
Query: 123 HGSVYSYNQKFAKDNANFSLNSDDPTLTGRYLNEDYQLAQSWGFTREQFKIINLNAAEA 181
HG+ + + +D R ++++++ E + +AE
Sbjct: 245 HGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILAEVLSPAEVIASATIVSAEV 303
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
[TaxId: 562]}
Length = 327
Score = 27.3 bits (61), Expect = 1.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 56 LKETVRRVYQGLKRGEDEFQVK 77
LK TV ++ G+K E +
Sbjct: 130 LKSTVEAIWAGIKATEAAVSEE 151
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 24.6 bits (54), Expect = 4.3
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 185 PEHEKKELIKLLESEYSD 202
P +E ++L + +++ Y +
Sbjct: 7 PAYESQKLHQAMQTSYRE 24
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 24.3 bits (53), Expect = 6.9
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 185 PEHEKKELIKLLESEYSD 202
+K++L+ L S Y
Sbjct: 10 SPADKRKLLDELRSIYRT 27
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId:
1097]}
Length = 283
Score = 24.8 bits (54), Expect = 8.6
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 42 LLGTELYQMLGYEGLKETVRRVYQGLKRGED 72
+ + +G E YQ G D
Sbjct: 21 IFFGVVKPNIGLSP-GEFAEIAYQSWLGGLD 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,753
Number of extensions: 33335
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 16
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)