Query psy15248
Match_columns 75
No_of_seqs 101 out of 250
Neff 4.0
Searched_HMMs 29240
Date Sat Aug 17 01:09:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vry_A Glycine receptor alpha- 57.6 12 0.00041 22.8 3.4 31 21-51 16-46 (76)
2 1v54_L VIIIA, cytochrome C oxi 20.3 30 0.001 19.2 0.6 24 10-33 14-37 (47)
3 2k9j_B Integrin beta-3; transm 17.8 41 0.0014 18.2 0.8 20 22-41 20-39 (43)
4 2y69_L Cytochrome C oxidase su 17.5 41 0.0014 19.7 0.8 24 10-33 30-53 (63)
5 3tlw_A GLR4197 protein, GLIC; 16.0 1.1E+02 0.0039 21.3 3.0 30 20-49 239-268 (321)
6 3rhw_A Avermectin-sensitive gl 15.1 1.1E+02 0.0039 21.6 2.8 31 20-50 256-286 (347)
7 3zwu_A Alkaline phosphatase PH 13.0 29 0.00099 27.6 -0.9 18 27-44 180-197 (592)
8 1kf6_C Fumarate reductase 15 k 12.7 2E+02 0.0068 19.1 3.3 40 18-57 37-82 (130)
9 3rqw_A ELIC pentameric ligand 12.4 1.4E+02 0.0048 20.8 2.6 30 20-49 242-271 (322)
10 1s4x_A Integrin beta-3; cell a 11.1 65 0.0022 19.1 0.4 19 23-41 10-28 (67)
No 1
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=57.57 E-value=12 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHHHhhhcccchhhhhhhhhhhhhhHHHHH
Q psy15248 21 TLLLHGVGTLMPWNMFITAKAQRLSANIIII 51 (75)
Q Consensus 21 if~llGiG~LlPWN~FITA~dY~~~~~~~~i 51 (75)
+....|+-.-+|.=++++|.|.|+..+++.+
T Consensus 16 tt~~~~~~~~lPkVSYikAiDvw~~~C~~FV 46 (76)
T 1vry_A 16 TTQSSGSRASLPKVSYVKAIDIWLAVCLLFV 46 (76)
T ss_dssp HHHHHCTTTCCCSHHHHHHHHHTHHHHHHHH
T ss_pred HHHhcCcccCCCCccchHHHHHHHHHHHHHH
Confidence 3444556667999999999999998877755
No 2
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=20.34 E-value=30 Score=19.19 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=16.3
Q ss_pred CCCcccchhhhHHHHHhhhcccch
Q psy15248 10 PPRDRWKLVYLTLLLHGVGTLMPW 33 (75)
Q Consensus 10 ~P~Dr~~~vyiif~llGiG~LlPW 33 (75)
.++.|+.+.-.....+|.|..+||
T Consensus 14 ~~~nk~~~~~~~~~f~g~GF~~PF 37 (47)
T 1v54_L 14 SVENKWRLLAMMTLFFGSGFAAPF 37 (47)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhHH
Confidence 456666555455557888888886
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=17.79 E-value=41 Score=18.16 Aligned_cols=20 Identities=35% Similarity=0.801 Sum_probs=17.5
Q ss_pred HHHHhhhcccchhhhhhhhh
Q psy15248 22 LLLHGVGTLMPWNMFITAKA 41 (75)
Q Consensus 22 f~llGiG~LlPWN~FITA~d 41 (75)
..+.|+..|+=|-.++|..|
T Consensus 20 ivliGl~lLliwk~~~~i~D 39 (43)
T 2k9j_B 20 ILLIGLAALLIWKLLITIHD 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHheeh
Confidence 46679999999999999887
No 4
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=17.46 E-value=41 Score=19.72 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=14.6
Q ss_pred CCCcccchhhhHHHHHhhhcccch
Q psy15248 10 PPRDRWKLVYLTLLLHGVGTLMPW 33 (75)
Q Consensus 10 ~P~Dr~~~vyiif~llGiG~LlPW 33 (75)
.++.|+.+.-.....+|.|..+||
T Consensus 30 ~~~nk~~~~~~~~~f~g~GF~~PF 53 (63)
T 2y69_L 30 SVENKWRLLAMMTLFFGSGFAAPF 53 (63)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhhhH
Confidence 345555444444566777777776
No 5
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=15.98 E-value=1.1e+02 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=23.5
Q ss_pred hHHHHHhhhcccchhhhhhhhhhhhhhHHH
Q psy15248 20 LTLLLHGVGTLMPWNMFITAKAQRLSANII 49 (75)
Q Consensus 20 iif~llGiG~LlPWN~FITA~dY~~~~~~~ 49 (75)
.+.+++++...+|=.+.+++.|.|+..+++
T Consensus 239 ~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~ 268 (321)
T 3tlw_A 239 HIAFNILVETCLPKTPYMTYTGAIIFMIYL 268 (321)
T ss_dssp HHHHHHHHCCCCCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCccccHHHHHHHHHHHH
Confidence 455677788889999999999977776555
No 6
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=15.07 E-value=1.1e+02 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.2
Q ss_pred hHHHHHhhhcccchhhhhhhhhhhhhhHHHH
Q psy15248 20 LTLLLHGVGTLMPWNMFITAKAQRLSANIII 50 (75)
Q Consensus 20 iif~llGiG~LlPWN~FITA~dY~~~~~~~~ 50 (75)
++.+++++...+|=-+.+++.|.|+..+++.
T Consensus 256 ~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~ 286 (347)
T 3rhw_A 256 MTAQSAGINSQLPPVSYIKAIDVWIGACMTF 286 (347)
T ss_dssp HHHHHHHHHHTSCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCccceeHHHHHHHHHHHH
Confidence 3455666777899999999999887766553
No 7
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=13.04 E-value=29 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=14.8
Q ss_pred hhcccchhhhhhhhhhhh
Q psy15248 27 VGTLMPWNMFITAKAQRL 44 (75)
Q Consensus 27 iG~LlPWN~FITA~dY~~ 44 (75)
.|..-|||.++|.++++.
T Consensus 180 aGG~TPWGT~LtcEEn~~ 197 (592)
T 3zwu_A 180 ANGKTPWGTYLTCEENFT 197 (592)
T ss_dssp EEEECTTSCEEEEECSGG
T ss_pred CCCCCcCCcCCccccccc
Confidence 366789999999998654
No 8
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=12.72 E-value=2e+02 Score=19.12 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=23.1
Q ss_pred hhhHHHHHhhhccc----chhhhhhhhh--hhhhhHHHHHHHHHHH
Q psy15248 18 VYLTLLLHGVGTLM----PWNMFITAKA--QRLSANIIIIIIVLIY 57 (75)
Q Consensus 18 vyiif~llGiG~Ll----PWN~FITA~d--Y~~~~~~~~i~i~~~~ 57 (75)
.|.++++.|+.+|- .||.|+...+ --.-.|++.++..+.|
T Consensus 37 wf~l~Ll~Gl~~L~~G~~aw~~fv~fl~nPivvilniiaLaa~L~H 82 (130)
T 1kf6_C 37 WFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLH 82 (130)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45667777877553 7888886543 2233344544444444
No 9
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=12.44 E-value=1.4e+02 Score=20.85 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=22.2
Q ss_pred hHHHHHhhhcccchhhhhhhhhhhhhhHHH
Q psy15248 20 LTLLLHGVGTLMPWNMFITAKAQRLSANII 49 (75)
Q Consensus 20 iif~llGiG~LlPWN~FITA~dY~~~~~~~ 49 (75)
.+.+++++...+|-.+.+++.|.|+..+++
T Consensus 242 ~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~ 271 (322)
T 3rqw_A 242 VVAYAFYTSNILPRLPYTTVIDQMIIAGYG 271 (322)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCccchHHHHHHHHHHHH
Confidence 345566777788988888888877776655
No 10
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=11.06 E-value=65 Score=19.05 Aligned_cols=19 Identities=16% Similarity=-0.080 Sum_probs=7.5
Q ss_pred HHHhhhcccchhhhhhhhh
Q psy15248 23 LLHGVGTLMPWNMFITAKA 41 (75)
Q Consensus 23 ~llGiG~LlPWN~FITA~d 41 (75)
-++|+..|+-|=..+|..|
T Consensus 10 ~liGl~lLliwKll~~i~D 28 (67)
T 1s4x_A 10 SSGLVPRGSHMKLLITIHD 28 (67)
T ss_dssp -----------CHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 3789999999999999988
Done!