Query psy15248
Match_columns 75
No_of_seqs 101 out of 250
Neff 4.0
Searched_HMMs 13730
Date Sat Aug 17 01:09:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15248.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15248hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 11.4 66 0.0048 16.7 1.9 24 10-33 13-36 (46)
2 d2g7oa1 a.241.1.1 (A:60-127) T 11.2 33 0.0024 19.3 0.6 11 23-33 24-34 (68)
3 d1kf6c_ f.21.2.2 (C:) Fumarate 10.4 1.3E+02 0.0093 18.5 3.4 25 17-41 36-64 (130)
4 d3buxb1 a.39.1.7 (B:178-263) C 8.6 44 0.0032 19.5 0.5 25 25-49 17-41 (86)
5 d1jb0i_ f.23.17.1 (I:) Subunit 8.2 1.4E+02 0.01 14.7 2.6 30 28-59 7-36 (38)
6 d1x6va1 b.122.1.3 (A:229-389) 7.2 61 0.0044 19.9 0.7 24 19-42 36-59 (161)
7 d2i00a1 d.106.1.4 (A:301-406) 5.6 78 0.0057 17.6 0.5 6 30-35 26-31 (106)
8 d1v47a1 b.122.1.3 (A:4-135) AT 5.1 1.1E+02 0.0082 18.0 1.0 25 19-43 12-36 (132)
9 d1m8pa1 b.122.1.3 (A:1-170) AT 4.8 91 0.0066 19.2 0.4 26 18-43 40-65 (170)
10 d1g8fa1 b.122.1.3 (A:2-168) AT 4.7 1.1E+02 0.008 18.8 0.8 24 19-42 41-64 (167)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.41 E-value=66 Score=16.75 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=18.7
Q ss_pred CCCcccchhhhHHHHHhhhcccch
Q psy15248 10 PPRDRWKLVYLTLLLHGVGTLMPW 33 (75)
Q Consensus 10 ~P~Dr~~~vyiif~llGiG~LlPW 33 (75)
.-+.|+.+.-..+..+|.|.-.|+
T Consensus 13 sv~Nk~rLla~m~~~fGsgfa~PF 36 (46)
T d1v54l_ 13 SVENKWRLLAMMTLFFGSGFAAPF 36 (46)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccccchH
Confidence 345788888888888888888885
No 2
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=11.20 E-value=33 Score=19.31 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.9
Q ss_pred HHHhhhcccch
Q psy15248 23 LLHGVGTLMPW 33 (75)
Q Consensus 23 ~llGiG~LlPW 33 (75)
=+|||++|-|-
T Consensus 24 KiLGI~~lSPH 34 (68)
T d2g7oa1 24 KILGIESLSPH 34 (68)
T ss_dssp HHHHHHHTCGG
T ss_pred HHhcccccCcc
Confidence 37999999883
No 3
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=10.43 E-value=1.3e+02 Score=18.47 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=19.3
Q ss_pred hhhhHHHHHhhhccc----chhhhhhhhh
Q psy15248 17 LVYLTLLLHGVGTLM----PWNMFITAKA 41 (75)
Q Consensus 17 ~vyiif~llGiG~Ll----PWN~FITA~d 41 (75)
..|.++++.|+.+|- .||.|+...+
T Consensus 36 ~~f~lvLl~Gl~~L~~g~~aw~~fv~flq 64 (130)
T d1kf6c_ 36 VWFSIELIFGLFALKNGPEAWAGFVDFLQ 64 (130)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 456778888998883 7899988665
No 4
>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=44 Score=19.55 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.0
Q ss_pred HhhhcccchhhhhhhhhhhhhhHHH
Q psy15248 25 HGVGTLMPWNMFITAKAQRLSANII 49 (75)
Q Consensus 25 lGiG~LlPWN~FITA~dY~~~~~~~ 49 (75)
.|.-+++||..|-.+..=-.+..-+
T Consensus 17 fg~r~iVpW~~Fr~~L~~vH~i~sg 41 (86)
T d3buxb1 17 FGEKTIVPWKSFRQALHEVHPISSG 41 (86)
T ss_dssp HTTCSEEEHHHHHHHHHHHSCCCCH
T ss_pred CCCCeeeeHHHHHHHHHHhCCCCCc
Confidence 5777899999998876533333333
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=8.23 E-value=1.4e+02 Score=14.74 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=14.1
Q ss_pred hcccchhhhhhhhhhhhhhHHHHHHHHHHHhh
Q psy15248 28 GTLMPWNMFITAKAQRLSANIIIIIIVLIYTA 59 (75)
Q Consensus 28 G~LlPWN~FITA~dY~~~~~~~~i~i~~~~~~ 59 (75)
.+-|||= ||-..- |.-.+++.-+++++-|+
T Consensus 7 AsyLPwI-~iPvv~-wl~p~vvMglLFiyIEs 36 (38)
T d1jb0i_ 7 ASFLPWI-FIPVVC-WLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp TTTHHHH-HHHHHH-THHHHHHHHHHHHHHHC
T ss_pred HHhcchh-HHHHHH-HHHHHHHHHHHheeeec
Confidence 3456773 344444 44444443344445443
No 6
>d1x6va1 b.122.1.3 (A:229-389) ATP sulfurylase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.22 E-value=61 Score=19.90 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.8
Q ss_pred hhHHHHHhhhcccchhhhhhhhhh
Q psy15248 19 YLTLLLHGVGTLMPWNMFITAKAQ 42 (75)
Q Consensus 19 yiif~llGiG~LlPWN~FITA~dY 42 (75)
..-.-++|.|..-|=+-|++-.||
T Consensus 36 ~~dl~~L~~G~fsPL~GFM~~~d~ 59 (161)
T d1x6va1 36 MQWVQVLAEGWATPLNGFMREREY 59 (161)
T ss_dssp HHHHHHHHTTTTTTCCSSCCHHHH
T ss_pred HHHHHHHHhhccccccccccHHHH
Confidence 344678999999999999999997
No 7
>d2i00a1 d.106.1.4 (A:301-406) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.62 E-value=78 Score=17.65 Aligned_cols=6 Identities=33% Similarity=0.911 Sum_probs=3.6
Q ss_pred ccchhh
Q psy15248 30 LMPWNM 35 (75)
Q Consensus 30 LlPWN~ 35 (75)
++|||-
T Consensus 26 ~~~~N~ 31 (106)
T d2i00a1 26 VAEWNN 31 (106)
T ss_dssp SCGGGS
T ss_pred CCCcCC
Confidence 567763
No 8
>d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.06 E-value=1.1e+02 Score=18.02 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.4
Q ss_pred hhHHHHHhhhcccchhhhhhhhhhh
Q psy15248 19 YLTLLLHGVGTLMPWNMFITAKAQR 43 (75)
Q Consensus 19 yiif~llGiG~LlPWN~FITA~dY~ 43 (75)
+.=.-+++.|..-|=+-|++-.||.
T Consensus 12 ~~dle~i~~G~fsPL~gFM~~~d~~ 36 (132)
T d1v47a1 12 RLDLENLATGAFFPVKGFMTREEAL 36 (132)
T ss_dssp HHHHHHHHTTTTTTCCSBCCHHHHH
T ss_pred HHHHHHHhcCCcCCccccCCHHHHH
Confidence 4456789999999999999999973
No 9
>d1m8pa1 b.122.1.3 (A:1-170) ATP sulfurylase N-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=4.76 E-value=91 Score=19.18 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.9
Q ss_pred hhhHHHHHhhhcccchhhhhhhhhhh
Q psy15248 18 VYLTLLLHGVGTLMPWNMFITAKAQR 43 (75)
Q Consensus 18 vyiif~llGiG~LlPWN~FITA~dY~ 43 (75)
.+.=.-++|.|..-|=+-|++-.||.
T Consensus 40 ~~~dle~l~~G~fsPL~GFM~~~d~~ 65 (170)
T d1m8pa1 40 QLCDLELIMNGGFSPLEGFMNQADYD 65 (170)
T ss_dssp HHHHHHHHHTSTTTTCCEECCHHHHH
T ss_pred HHHHHHHHHcCCcCCcCCcccHHHHH
Confidence 34556789999999999999999973
No 10
>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.72 E-value=1.1e+02 Score=18.79 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.9
Q ss_pred hhHHHHHhhhcccchhhhhhhhhh
Q psy15248 19 YLTLLLHGVGTLMPWNMFITAKAQ 42 (75)
Q Consensus 19 yiif~llGiG~LlPWN~FITA~dY 42 (75)
+.=+-+++.|..-|=+-|++..||
T Consensus 41 ~~dle~l~~G~fsPL~GFM~~~d~ 64 (167)
T d1g8fa1 41 LCDIELILNGGFSPLTGFLNENDY 64 (167)
T ss_dssp HHHHHHHHTTTTTTCCEECCHHHH
T ss_pred HHHHHHHhcCCCCCccccccHHHH
Confidence 445678999999999999999997
Done!