RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15248
         (75 letters)



>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain,
           lipid cubic phase, monoolein, peroxide, electron
           transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
           thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A*
           3qju_A* 3qjv_A* 4esl_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A*
           3qjt_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
          Length = 569

 Score = 24.3 bits (53), Expect = 4.1
 Identities = 5/40 (12%), Positives = 10/40 (25%)

Query: 30  LMPWNMFITAKAQRLSANIIIIIIVLIYTARLGLKSPFTP 69
                +F       L   +++ I  L        + P   
Sbjct: 470 AAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELA 509


>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster,
           iron-sulfur cluster, hydrolase/DNA complex; HET: PED;
           1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1
           PDB: 1orp_A* 1p59_A*
          Length = 226

 Score = 24.1 bits (53), Expect = 5.0
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 5   DLETNPPRDRWKLVYLTLLLHG 26
            L    P++ W + +  ++  G
Sbjct: 167 TLMKIIPKEEWSITHHRMIFFG 188


>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural
          genomi research consortium, nysgrc, transferase; 2.70A
          {Polaromonas SP}
          Length = 336

 Score = 23.7 bits (52), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 54 VLIYTARLGLKSPFTPAVG 72
          V I  ARLGLK  +   +G
Sbjct: 64 VAIGLARLGLKVGWASRLG 82


>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia
           coli} SCOP: a.96.1.1
          Length = 211

 Score = 23.6 bits (52), Expect = 7.3
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 5   DLETNPPRDRWKLVYLTLLLHG 26
            L    P +     +  L+LHG
Sbjct: 162 KLLKVVPAEFKVDCHHWLILHG 183


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 23.7 bits (50), Expect = 8.1
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 17  LVYLTLLLHGVGTLMPWNMF-ITAKAQRLSANIIIIIIVLIYTARLGLKS 65
           +     L + V   M + +F +  K       ++ ++  L+Y       S
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,185,684
Number of extensions: 54974
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 11
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)