RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15248
         (75 letters)



>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 22.9 bits (49), Expect = 4.9
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 30  LMPWNMFITAKAQRLSANIIIIIIVLIYTARLGLKSPFTP 69
              WN   +  A    A+ +  + V+ YT   G +     
Sbjct: 477 FATWNFVSSLGAFLSFASFLFFLGVIFYTLTRGARVTANN 516


>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
           (Tenebrio molitor), larva [TaxId: 7067]}
          Length = 378

 Score = 22.2 bits (46), Expect = 8.9
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 1   MENADLETNPPRDRWKLVYLTLLLHGVGTLM 31
              + + T      +K+    +L H  GT  
Sbjct: 291 TGGSQILTYKNPKPYKMAIAFMLAHPYGTTR 321


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,145
Number of extensions: 9791
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)