BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15249
(235 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383858209|ref|XP_003704594.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Megachile rotundata]
Length = 272
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 171/257 (66%), Gaps = 49/257 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLKLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P EE+IPK HRLDV V +Q LGVFSH P + D+IVPE+EKL +EG+IVQKLECRPYA
Sbjct: 72 PGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSTSSDSIVPETEKLYMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL SI +AS P RQV+ LD++VQNYKPVS+HKH
Sbjct: 132 DNCYMKLKLQSIKRASVPQRQVQQLDRVVQNYKPVSDHKHNIEYAEKKKAEGKKMRDDKD 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 TVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKEEATADDDDD 235
YKEEEK E DD+
Sbjct: 252 YKEEEKSSENAQKKDDE 268
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|340719856|ref|XP_003398361.1| PREDICTED: general transcription factor IIF subunit 2-like [Bombus
terrestris]
Length = 271
Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/259 (57%), Positives = 174/259 (67%), Gaps = 51/259 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLRLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P EE+IPK HRLDV V +Q LGVFSH P + D+IVPE+EKL +EG+IVQKLECRPYA
Sbjct: 72 PGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETEKLYMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL SI +AS P RQV+ LD++VQN+KPVS+HKH
Sbjct: 132 DNCYMKLKLQSIKRASVPQRQVQQLDRVVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDKD 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKE--EATADDDDD 235
YKEEEK E + AD+ DD
Sbjct: 252 YKEEEKSEGSQKKADESDD 270
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|350416874|ref|XP_003491146.1| PREDICTED: general transcription factor IIF subunit 2-like [Bombus
impatiens]
Length = 271
Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/259 (57%), Positives = 174/259 (67%), Gaps = 51/259 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLRLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P EE+IPK HRLDV V +Q LGVFSH P + D+IVPE+EKL +EG+IVQKLECRPYA
Sbjct: 72 PGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETEKLYMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL SI +AS P RQV+ LD++VQN+KPVS+HKH
Sbjct: 132 DNCYMKLKLQSIKRASVPQRQVQQLDRVVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDKD 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKE--EATADDDDD 235
YKEEEK E + AD+ DD
Sbjct: 252 YKEEEKFEGSQKKADESDD 270
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|380020787|ref|XP_003694260.1| PREDICTED: general transcription factor IIF subunit 2-like [Apis
florea]
Length = 271
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/259 (57%), Positives = 173/259 (66%), Gaps = 51/259 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLRLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P EE+IPK HRLDV V +Q LGVFSH P + D+IVPE+EKL +EG+IVQKLECRPYA
Sbjct: 72 PGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETEKLYMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL SI +AS P RQV+ LD++VQN+KPVS+HKH
Sbjct: 132 DNCYMKLKLQSIKRASVPQRQVQQLDRVVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDKD 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKEEAT--ADDDDD 235
YKEEEK E+ D+ DD
Sbjct: 252 YKEEEKLEDTQKKVDESDD 270
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|66564899|ref|XP_623868.1| PREDICTED: general transcription factor IIF subunit 2 isoform 1
[Apis mellifera]
Length = 271
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/259 (57%), Positives = 173/259 (66%), Gaps = 51/259 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLRLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P EE+IPK HRLDV V +Q LGVFSH P + D+IVPE+EKL +EG+IVQKLECRPYA
Sbjct: 72 PGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETEKLYMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL SI +AS P RQV+ LD++VQN+KPVS+HKH
Sbjct: 132 DNCYMKLKLQSIKRASVPQRQVQQLDRVVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDKD 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKEEATA--DDDDD 235
YKEEEK E+ D+ DD
Sbjct: 252 YKEEEKLEDMQKKIDESDD 270
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|332018908|gb|EGI59454.1| General transcription factor IIF subunit 2 [Acromyrmex echinatior]
Length = 269
Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 167/250 (66%), Gaps = 49/250 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLKLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
E +IPK HRLDV V RQ LGVFSH P + DAIVPE+EKL +EG+IVQKLECRPYA
Sbjct: 72 SGEGEIPKQHRLDVTTVTRQMLGVFSHVAPSTSSDAIVPETEKLFMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL+SI +AS P RQV+ LD++VQN+KPVS+HKH
Sbjct: 132 DNCYMKLKLESIKRASVPQRQVQQLDRVVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDKD 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKEEA 228
YKEEEK E
Sbjct: 252 YKEEEKSAET 261
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|307203229|gb|EFN82384.1| General transcription factor IIF subunit 2 [Harpegnathos saltator]
Length = 272
Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 145/251 (57%), Positives = 169/251 (67%), Gaps = 49/251 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLRLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
EE+IPK HRLDV V Q LGVFSH P + DAIVPE+EK+ +EG+IVQKLECRPYA
Sbjct: 72 SGEEEIPKQHRLDVTTVTTQILGVFSHVTPSTSSDAIVPETEKIFMEGRIVQKLECRPYA 131
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D+CYMKLKL+SI +AS P RQV+ LD++VQN+KPVS+HKH
Sbjct: 132 DNCYMKLKLESIKRASVPQRQVQQLDRVVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDKE 191
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVLGMLFAAFERHQYYNIKDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELKPEYRH 251
Query: 219 YKEEEKKEEAT 229
YKE+EK E+T
Sbjct: 252 YKEDEKVTEST 262
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFE+HQYYNIKDLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 196 MLFAAFERHQYYNIKDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 249
>gi|170065599|ref|XP_001868006.1| transcription initiation factor IIF subunit beta [Culex
quinquefasciatus]
gi|167862525|gb|EDS25908.1| transcription initiation factor IIF subunit beta [Culex
quinquefasciatus]
Length = 280
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 174/263 (66%), Gaps = 56/263 (21%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI + GQK VSL+LS+A + +DP
Sbjct: 19 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSDAVINIDP 78
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAI--VPESEKLMLEGKIVQKLECRPY 145
EE IP+DHRLDV +V +QTLGVF+H +P + PESEKL +EG+IVQKLECRPY
Sbjct: 79 AEE-IPRDHRLDVSVVTKQTLGVFAHSVPASGAGSADPTPESEKLFMEGRIVQKLECRPY 137
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------------- 186
AD+CYMK+KL+SI KASQP RQ+K L+KIVQ +KPVS+HKH
Sbjct: 138 ADNCYMKMKLESIRKASQPARQLKSLEKIVQTFKPVSDHKHNIEEKERKKAEGKKSRDDK 197
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
++YLKEILKEVC+YN+KNPHKNMWELK EYR
Sbjct: 198 NAVLDMLFNAFEKHQYYNIKDLVKITRQPISYLKEILKEVCDYNMKNPHKNMWELKKEYR 257
Query: 218 CYKEEEKKEE-----ATADDDDD 235
YKE++KK+E +D D D
Sbjct: 258 HYKEDDKKDEDGKEGGMSDSDSD 280
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT+QPI L
Sbjct: 203 MLFNAFEKHQYYNIKDLVKITRQPISYL 230
>gi|312384124|gb|EFR28929.1| hypothetical protein AND_02541 [Anopheles darlingi]
Length = 271
Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/260 (56%), Positives = 173/260 (66%), Gaps = 54/260 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI + GQK VSL+LS+A + +DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYMANKWEKAPGNIEVGKLKIFKQSGQKTQVSLTLSDAVINIDP 73
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYAD 147
EE IP+DHRLDV +V +QTLGVFSH + D VPE EK +EG+IVQKLECRPYAD
Sbjct: 74 AEE-IPRDHRLDVSVVTKQTLGVFSHAVTTTRDDP-VPECEKQYMEGRIVQKLECRPYAD 131
Query: 148 SCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------------- 186
+CYMK+KL+SI KASQP RQ+K L+KIV NYKPVS+HKH
Sbjct: 132 NCYMKMKLESIRKASQPARQIKSLEKIVHNYKPVSDHKHNIEDRERKKAEGKKSREDKNA 191
Query: 187 ---------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
++YLKEILKEVC+YN+KNPHKNMWELK EYR Y
Sbjct: 192 VLDMLFNAFEKHQYYNIKDLVKLTRQPISYLKEILKEVCDYNMKNPHKNMWELKKEYRHY 251
Query: 220 KEEEKKE----EATADDDDD 235
KE++KKE +A +D D D
Sbjct: 252 KEDDKKEADAAKANSDSDSD 271
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVK+T+QPI L
Sbjct: 195 MLFNAFEKHQYYNIKDLVKLTRQPISYL 222
>gi|157138343|ref|XP_001657254.1| hypothetical protein AaeL_AAEL013998 [Aedes aegypti]
gi|108869504|gb|EAT33729.1| AAEL013998-PA [Aedes aegypti]
Length = 270
Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 169/256 (66%), Gaps = 49/256 (19%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI + GQK VSL+LSEA + +DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSEAVINIDP 73
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYAD 147
EE IP++H+LDV +V +QTLGVFSH +P + PE EKL +EG+IVQ+LECRP D
Sbjct: 74 GEE-IPREHKLDVSVVTKQTLGVFSHSVPSGTKEDGAPEGEKLFMEGRIVQRLECRPLGD 132
Query: 148 SCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------------- 186
+ YMK+KL+SI KASQP RQVK L+KIV N+KPVS+HKH
Sbjct: 133 NAYMKMKLESIRKASQPARQVKSLEKIVHNFKPVSDHKHNIEDKERKKAEGKKSRDDKNA 192
Query: 187 ---------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
++YLKEILKEVC+YN+KNPHKNMWELK EYR Y
Sbjct: 193 VLDMLFNAFEKHQYYNIKDLVKITRQPISYLKEILKEVCDYNMKNPHKNMWELKKEYRHY 252
Query: 220 KEEEKKEEATADDDDD 235
K+++KKEE+ D D
Sbjct: 253 KDDDKKEESKGMSDSD 268
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT+QPI L
Sbjct: 196 MLFNAFEKHQYYNIKDLVKITRQPISYL 223
>gi|332376103|gb|AEE63192.1| unknown [Dendroctonus ponderosae]
Length = 265
Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 173/257 (67%), Gaps = 52/257 (20%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV- 85
+LDL+ A+RGVWLVKVPKYVAN+WEK P +E GKLKI + GQKP VSL+LS A + +
Sbjct: 10 DLDLSNANRGVWLVKVPKYVANRWEKAPNEMEVGKLKITKQQGQKPQVSLTLSPAILNLN 69
Query: 86 DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPY 145
+P EE IPKDHRLDV V +QTLGVFSH IP D++VPE+EKL +EGKIVQKLECRPY
Sbjct: 70 EPGEESIPKDHRLDVSTVTQQTLGVFSHVIPE-KSDSVVPETEKLHMEGKIVQKLECRPY 128
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------------- 186
AD+CYMKLKL+SI KAS P R+VK LD++V +YKPVS+HK+
Sbjct: 129 ADTCYMKLKLESIRKASLPTRKVKQLDRVVHSYKPVSDHKNNIEYMERKKAEGKKARDDK 188
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+TYLKEILKEVCNYNLKNPHKNMWELKPEYR
Sbjct: 189 DSVLEMLFSAFEKHQYYNIKDLVKITRQPITYLKEILKEVCNYNLKNPHKNMWELKPEYR 248
Query: 218 CYK--EEEKKEEATADD 232
YK E E K+E + DD
Sbjct: 249 HYKPTETETKKEDSDDD 265
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLF+AFEKHQYYNIKDLVKIT+QPI N +L + +W +K P+Y
Sbjct: 194 MLFSAFEKHQYYNIKDLVKITRQPITYLKEILKEVCNYNLKNPHKNMWELK-PEY 247
>gi|383858211|ref|XP_003704595.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Megachile rotundata]
Length = 277
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 168/262 (64%), Gaps = 54/262 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI +NPGQK VSL LSEA + + +
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKITKNPGQKAEVSLKLSEAVLALKE 71
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVF-----SHYIPPVNPDAIVPESEKLMLEGKIVQKLE 141
P EE+IPK HRLDV V +Q L + ++ + D+IVPE+EKL +EG+IVQKLE
Sbjct: 72 PGEEEIPKQHRLDVTTVTKQMLDALLFHKCNFWLASTSSDSIVPETEKLYMEGRIVQKLE 131
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRPYAD+CYMKLKL SI +AS P RQV+ LD++VQNYKPVS+HKH
Sbjct: 132 CRPYADNCYMKLKLQSIKRASVPQRQVQQLDRVVQNYKPVSDHKHNIEYAEKKKAEGKKM 191
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
+ YLKEIL EVCNYNLKNPH+NMWELK
Sbjct: 192 RDDKDTVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK 251
Query: 214 PEYRCYKEEEKKEEATADDDDD 235
PEYR YKEEEK E DD+
Sbjct: 252 PEYRHYKEEEKSSENAQKKDDE 273
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKIT+QPIV N +L R +W +K P+Y
Sbjct: 201 MLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNLKNPHRNMWELK-PEY 254
>gi|118778639|ref|XP_308768.3| AGAP007002-PA [Anopheles gambiae str. PEST]
gi|116132481|gb|EAA04044.3| AGAP007002-PA [Anopheles gambiae str. PEST]
Length = 272
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/242 (57%), Positives = 161/242 (66%), Gaps = 50/242 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LDL+ A RGVWLVKVPKY+ANKWEK PGNIE GKLKI + GQK VSL+LS+A + +DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSDAVINIDP 73
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYAD 147
EE IP+DHRLDV +V +QTLGVFSH + D VPE EK +EG+IVQKLECRPYAD
Sbjct: 74 AEE-IPRDHRLDVSVVTKQTLGVFSHAVTTTRDDP-VPECEKQYMEGRIVQKLECRPYAD 131
Query: 148 SCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------------- 186
CYMK+KL+SI KASQP RQVK L+KIV NYKPVS+HKH
Sbjct: 132 HCYMKMKLESIRKASQPARQVKSLEKIVHNYKPVSDHKHNIEDRERKKAEGKKSRDDKNA 191
Query: 187 ---------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
++YLKEILKEVC+YN+KNPHKNMWELK EYR Y
Sbjct: 192 VLDMLFNAFEKHQYYNIKDLVRITRQPISYLKEILKEVCDYNMKNPHKNMWELKKEYRHY 251
Query: 220 KE 221
KE
Sbjct: 252 KE 253
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLV+IT+QPI L
Sbjct: 195 MLFNAFEKHQYYNIKDLVRITRQPISYL 222
>gi|91082807|ref|XP_968134.1| PREDICTED: similar to AGAP007002-PA [Tribolium castaneum]
gi|270007102|gb|EFA03550.1| hypothetical protein TcasGA2_TC013555 [Tribolium castaneum]
Length = 266
Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/246 (57%), Positives = 167/246 (67%), Gaps = 51/246 (20%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV- 85
+LDL+ A+RGVWLVKVPKYVAN+WEK P ++E GKLKI +N G P VSL+LS A + +
Sbjct: 10 DLDLSNATRGVWLVKVPKYVANRWEKAPSDMEVGKLKITKN-GTPPQVSLTLSSAILNLN 68
Query: 86 DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPY 145
+P EE IPKDHRLDV V +QTLGVFSH IP DA+VPE+EKL +EGKIVQKLECRPY
Sbjct: 69 EPGEESIPKDHRLDVSKVTQQTLGVFSHVIP-TQTDAVVPETEKLYMEGKIVQKLECRPY 127
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------------- 186
AD+CYMKLKL+SI KAS P R+VK LD++V +YKPVS+HK+
Sbjct: 128 ADNCYMKLKLESIRKASLPTRKVKQLDRVVTSYKPVSDHKNNIEYMERKKAEGKKARDDK 187
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+TYLKEILKEVCNYNLKNPHKNMWELKPEYR
Sbjct: 188 DAVLEMLFAAFEKHQYYNIRDLVKITKQPITYLKEILKEVCNYNLKNPHKNMWELKPEYR 247
Query: 218 CYKEEE 223
YK+ E
Sbjct: 248 HYKQPE 253
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNI+DLVKITKQPI N +L + +W +K P+Y
Sbjct: 193 MLFAAFEKHQYYNIRDLVKITKQPITYLKEILKEVCNYNLKNPHKNMWELK-PEY 246
>gi|357622901|gb|EHJ74261.1| putative Transcription initiation factor IIF subunit beta [Danaus
plexippus]
Length = 271
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/259 (54%), Positives = 166/259 (64%), Gaps = 53/259 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LDL+ RGVWLVKVPKY+ANKW+K G+IE GKLKI R PGQ+ V LSLSEA +C+ +
Sbjct: 14 LDLSNTGRGVWLVKVPKYIANKWDKASGDIEVGKLKISRVPGQRAQVQLSLSEAVLCLNE 73
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P E+ +PK+HRLDV V RQ+LGVFSH +P N D +VPESEKL +EG+IVQKLEC+PYA
Sbjct: 74 PGEQALPKEHRLDVSNVTRQSLGVFSHAVPS-NTDTVVPESEKLYMEGRIVQKLECKPYA 132
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
D Y KLK +SI KA P RQV+ L IVQN+KPVS+HKH
Sbjct: 133 DPTYYKLKSESIRKALMPQRQVQQLKGIVQNFKPVSDHKHNIDYQVKKKAEGKKARDDKE 192
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+ YLKEILKEVCNYNLKNPHKNMWELKPEYR
Sbjct: 193 SVLNVLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVCNYNLKNPHKNMWELKPEYRH 252
Query: 219 YKEE---EKKEEATADDDD 234
YK+E E KE+ + D D
Sbjct: 253 YKQEAPVETKEDPQSSDSD 271
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 11/61 (18%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKYVANKW 50
+LFAAFEKHQYYNIKDL IT+QPIV N +L + +W +K P+Y K
Sbjct: 197 VLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVCNYNLKNPHKNMWELK-PEYRHYKQ 255
Query: 51 E 51
E
Sbjct: 256 E 256
>gi|156555618|ref|XP_001602997.1| PREDICTED: general transcription factor IIF subunit 2-like [Nasonia
vitripennis]
Length = 270
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/259 (52%), Positives = 165/259 (63%), Gaps = 50/259 (19%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV- 85
+LDL+ A RGVWLVKVPKY+A+KWEK PGNIE KL+I ++ QK V+L LSEA + +
Sbjct: 12 DLDLSNAGRGVWLVKVPKYIASKWEKAPGNIEVAKLRITKHVKQKAEVTLKLSEAVLALK 71
Query: 86 DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPY 145
+P E+ IPK H+LDV V QTLGVFSH P N D PE++KL +EGKIVQKLECRP+
Sbjct: 72 EPGEQDIPKQHKLDVTTVIHQTLGVFSHLPSPNNADTSAPEADKLSMEGKIVQKLECRPH 131
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------------- 186
AD+ YMKLKL+SI KAS P RQV+ L + VQN+KPVS+HKH
Sbjct: 132 ADNTYMKLKLESIKKASIPQRQVQQLQRAVQNFKPVSDHKHNIEYAEKKKAEGKKMRDDK 191
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+ YLKEIL EVCNYNLKNPH+NMWELKPEYR
Sbjct: 192 AVVLEMLFAAFEKHQYYNIKDLVKITRQPVVYLKEILNEVCNYNLKNPHRNMWELKPEYR 251
Query: 218 CYKEEE-KKEEATADDDDD 235
YK+E+ E++ D+D D
Sbjct: 252 HYKDEKPANAESSKDNDSD 270
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 45/71 (63%), Gaps = 12/71 (16%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKYVANKW 50
MLFAAFEKHQYYNIKDLVKIT+QP+V N +L R +W +K P+Y K
Sbjct: 197 MLFAAFEKHQYYNIKDLVKITRQPVVYLKEILNEVCNYNLKNPHRNMWELK-PEYRHYKD 255
Query: 51 EKVPGNIEAGK 61
EK P N E+ K
Sbjct: 256 EK-PANAESSK 265
>gi|195389999|ref|XP_002053656.1| GJ23231 [Drosophila virilis]
gi|194151742|gb|EDW67176.1| GJ23231 [Drosophila virilis]
Length = 286
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/280 (48%), Positives = 171/280 (61%), Gaps = 65/280 (23%)
Query: 15 KDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVV 74
KD V+I + +LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK V
Sbjct: 6 KDKVQIIDK---DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQV 62
Query: 75 SLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-------------VNPD 121
SLSL+ A + +DP+E KIP +H LDV V +QTLGVFSH P
Sbjct: 63 SLSLTPAVLALDPDE-KIPTEHVLDVSQVTKQTLGVFSHMAPTEAAAVASNGKENGTGAA 121
Query: 122 AIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPV 181
+ P+SEKL +EG+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQNYKPV
Sbjct: 122 SGTPDSEKLYMEGRIVQKLECRPIADTCYMKLKLESIRKASEPQRRVQPIDKIVQNYKPV 181
Query: 182 SNHKH------------------------------------------------LTYLKEI 193
+H H ++YLKEI
Sbjct: 182 KDHAHNIEYRERKKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEI 241
Query: 194 LKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATADDD 233
LK+VC+YN+KNPHKNMWELK EYR YK +E+K+E A D
Sbjct: 242 LKDVCDYNMKNPHKNMWELKKEYRHYKTDEQKDEEKAKSD 281
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 211 MLFHAFEKHQYYNIKDLVKITNQPISYL 238
>gi|195055594|ref|XP_001994698.1| GH14638 [Drosophila grimshawi]
gi|193892461|gb|EDV91327.1| GH14638 [Drosophila grimshawi]
Length = 287
Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/274 (49%), Positives = 169/274 (61%), Gaps = 65/274 (23%)
Query: 15 KDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVV 74
KD V+I + +LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK V
Sbjct: 6 KDKVQIIDK---DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRISKTPGQKAQV 62
Query: 75 SLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-------------VNPD 121
SLSL+ A + +DP+E KIP +H LDV V +QTLGVFSH P
Sbjct: 63 SLSLTPAVLALDPDE-KIPTEHVLDVSQVTKQTLGVFSHMTPTEAAAGSSNGKENGAAGA 121
Query: 122 AIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPV 181
+ P+SEKL +EG+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQNYKPV
Sbjct: 122 SATPDSEKLYMEGRIVQKLECRPIADTCYMKLKLESIRKASEPQRRVQPIDKIVQNYKPV 181
Query: 182 SNHKH------------------------------------------------LTYLKEI 193
+H H ++YLKEI
Sbjct: 182 KDHAHNIEYRERKKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEI 241
Query: 194 LKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEE 227
LK+VC+YN+KNPHKNMWELK EYR YK EE+K+E
Sbjct: 242 LKDVCDYNMKNPHKNMWELKKEYRHYKTEEQKDE 275
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 211 MLFHAFEKHQYYNIKDLVKITNQPISYL 238
>gi|195330041|ref|XP_002031717.1| GM26151 [Drosophila sechellia]
gi|194120660|gb|EDW42703.1| GM26151 [Drosophila sechellia]
Length = 277
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 161/253 (63%), Gaps = 54/253 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTTAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-----VNPDAIVPESEKLMLEGKIVQKLE 141
P+E KIP +H LDV V +QTLGVFSH P P++EKL +EG+IVQKLE
Sbjct: 75 PDE-KIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSTAQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 193
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELK 253
Query: 214 PEYRCYKEEEKKE 226
EYR YK EEKKE
Sbjct: 254 KEYRHYKTEEKKE 266
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPISYL 230
>gi|242005669|ref|XP_002423685.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506861|gb|EEB10947.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 229
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 153/219 (69%), Gaps = 23/219 (10%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
LD T RGVWLVKVPKYVA KWEK GNIE GKLKI + PGQK V LSLSEA + + +
Sbjct: 9 LDTTNVERGVWLVKVPKYVATKWEKASGNIEVGKLKICKQPGQKMQVELSLSEAVLNLKE 68
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P EE IPKDHRLDV V TLGVFSH P N + ++PESEKL +EG+IVQKLECRPYA
Sbjct: 69 PGEENIPKDHRLDVLPVKHLTLGVFSH-TAPSNLEGVIPESEKLAMEGRIVQKLECRPYA 127
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSN------HKH-------------- 186
D+ YMKLKL++I KAS P+RQVK LD+ + + V N KH
Sbjct: 128 DNTYMKLKLETIRKASLPVRQVKQLDRARDDKEAVLNMLFAAFEKHQYYNIRDLVKITNQ 187
Query: 187 -LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEK 224
+ YLKEIL EVCNYN+KNPHKNMWELKPEYR YKE ++
Sbjct: 188 PIVYLKEILNEVCNYNIKNPHKNMWELKPEYRHYKESDE 226
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLFAAFEKHQYYNI+DLVKIT QPIV L
Sbjct: 165 MLFAAFEKHQYYNIRDLVKITNQPIVYL 192
>gi|195107531|ref|XP_001998362.1| GI23671 [Drosophila mojavensis]
gi|193914956|gb|EDW13823.1| GI23671 [Drosophila mojavensis]
Length = 288
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 162/262 (61%), Gaps = 63/262 (24%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +DP
Sbjct: 16 LDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALDP 75
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVN--------------PDAIVPESEKLMLE 133
+E KIP +H LDV V +QTLGVFSH P + P+SEKL +E
Sbjct: 76 DE-KIPTEHVLDVSQVTKQTLGVFSHMAPTEATTAAANNGKENGSAAASATPDSEKLYME 134
Query: 134 GKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------- 186
G+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQNYKPV +H H
Sbjct: 135 GRIVQKLECRPIADTCYMKLKLESIRKASEPQRRVQPIDKIVQNYKPVKDHAHNIEYRER 194
Query: 187 -----------------------------------------LTYLKEILKEVCNYNLKNP 205
++YLKEILK+VC+YN+KNP
Sbjct: 195 KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNP 254
Query: 206 HKNMWELKPEYRCYKEEEKKEE 227
HKNMWELK EYR YK EE+K+E
Sbjct: 255 HKNMWELKKEYRHYKTEEQKDE 276
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 212 MLFHAFEKHQYYNIKDLVKITNQPISYL 239
>gi|194902220|ref|XP_001980647.1| GG17267 [Drosophila erecta]
gi|190652350|gb|EDV49605.1| GG17267 [Drosophila erecta]
Length = 277
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 156/246 (63%), Gaps = 54/246 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-----VNPDAIVPESEKLMLEGKIVQKLE 141
P EEKIP +H LDV V +QTLGVFSH P A P++EKL +EG+IVQKLE
Sbjct: 75 P-EEKIPTEHVLDVSQVTKQTLGVFSHMAPSDGKENSTSSAAQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 193
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELK 253
Query: 214 PEYRCY 219
EYR Y
Sbjct: 254 KEYRHY 259
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPISYL 230
>gi|195499852|ref|XP_002097123.1| GE24669 [Drosophila yakuba]
gi|194183224|gb|EDW96835.1| GE24669 [Drosophila yakuba]
Length = 277
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 156/246 (63%), Gaps = 54/246 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-----VNPDAIVPESEKLMLEGKIVQKLE 141
P EEKIP +H LDV V +QTLGVFSH P A P++EKL +EG+IVQKLE
Sbjct: 75 P-EEKIPTEHVLDVSQVTKQTLGVFSHMAPSDGKENSTSSASQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 193
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELK 253
Query: 214 PEYRCY 219
EYR Y
Sbjct: 254 KEYRHY 259
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPISYL 230
>gi|24645751|ref|NP_524305.2| transcription factor TFIIFbeta [Drosophila melanogaster]
gi|1729817|sp|P41900.2|T2FB_DROME RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase TfIIF-beta; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|806871|gb|AAA86888.1| initiation factor TFIIF small subunit [Drosophila melanogaster]
gi|7299356|gb|AAF54548.1| transcription factor TFIIFbeta [Drosophila melanogaster]
gi|17946191|gb|AAL49136.1| RE56801p [Drosophila melanogaster]
gi|220942436|gb|ACL83761.1| TfIIFbeta-PA [synthetic construct]
gi|220952660|gb|ACL88873.1| TfIIFbeta-PA [synthetic construct]
Length = 277
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 156/246 (63%), Gaps = 54/246 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-----VNPDAIVPESEKLMLEGKIVQKLE 141
P EEKIP +H LDV V +QTLGVFSH P A P++EKL +EG+IVQKLE
Sbjct: 75 P-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 193
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELK 253
Query: 214 PEYRCY 219
EYR Y
Sbjct: 254 KEYRHY 259
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPISYL 230
>gi|195157940|ref|XP_002019852.1| GL12621 [Drosophila persimilis]
gi|194116443|gb|EDW38486.1| GL12621 [Drosophila persimilis]
Length = 282
Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 162/262 (61%), Gaps = 61/262 (23%)
Query: 15 KDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVV 74
KD V+I + +LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK V
Sbjct: 6 KDKVQIIDK---DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQV 62
Query: 75 SLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPD---------AIVP 125
SLSL+ A + +DP +EKIP +H LDV V +QTLGVFSH P + P
Sbjct: 63 SLSLTPAVLALDP-DEKIPTEHVLDVSQVTKQTLGVFSHMAPEAAANIGKENSTAPGAAP 121
Query: 126 ESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHK 185
++EKL +EG+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H
Sbjct: 122 DNEKLYMEGRIVQKLECRPIADTCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHA 181
Query: 186 H------------------------------------------------LTYLKEILKEV 197
H ++YLKEILK+V
Sbjct: 182 HNIEYRERKKAEGKKARDDKNSVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 198 CNYNLKNPHKNMWELKPEYRCY 219
C+YN+KNPHKNMWELK EYR Y
Sbjct: 242 CDYNMKNPHKNMWELKKEYRHY 263
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 207 MLFHAFEKHQYYNIKDLVKITNQPISYL 234
>gi|125778480|ref|XP_001359998.1| GA19669 [Drosophila pseudoobscura pseudoobscura]
gi|54639748|gb|EAL29150.1| GA19669 [Drosophila pseudoobscura pseudoobscura]
Length = 282
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 162/262 (61%), Gaps = 61/262 (23%)
Query: 15 KDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVV 74
KD V+I + +LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK V
Sbjct: 6 KDKVQIIDK---DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQV 62
Query: 75 SLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPD---------AIVP 125
SLSL+ A + +DP +EKIP +H LDV V +QTLGVFSH P + P
Sbjct: 63 SLSLTPAVLALDP-DEKIPTEHVLDVSQVTKQTLGVFSHMAPEAATNIGKENSTAPGAAP 121
Query: 126 ESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHK 185
++EKL +EG+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H
Sbjct: 122 DNEKLYMEGRIVQKLECRPIADTCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHA 181
Query: 186 H------------------------------------------------LTYLKEILKEV 197
H ++YLKEILK+V
Sbjct: 182 HNIEYRERKKAEGKKARDDKNSVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 198 CNYNLKNPHKNMWELKPEYRCY 219
C+YN+KNPHKNMWELK EYR Y
Sbjct: 242 CDYNMKNPHKNMWELKKEYRHY 263
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 207 MLFHAFEKHQYYNIKDLVKITNQPISYL 234
>gi|195571933|ref|XP_002103955.1| GD20705 [Drosophila simulans]
gi|194199882|gb|EDX13458.1| GD20705 [Drosophila simulans]
Length = 277
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/246 (50%), Positives = 155/246 (63%), Gaps = 54/246 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-----VNPDAIVPESEKLMLEGKIVQKLE 141
P +EKIP +H LDV V +QTLGVFSH P P++EKL +EG+IVQKLE
Sbjct: 75 P-DEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSTAQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 193
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELK 253
Query: 214 PEYRCY 219
EYR Y
Sbjct: 254 KEYRHY 259
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPISYL 230
>gi|195451370|ref|XP_002072887.1| GK13842 [Drosophila willistoni]
gi|194168972|gb|EDW83873.1| GK13842 [Drosophila willistoni]
Length = 280
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 163/260 (62%), Gaps = 57/260 (21%)
Query: 13 NIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKP 72
+IKD V+I + +LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK
Sbjct: 5 DIKDKVQIIDK---DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKA 61
Query: 73 VVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVP-----ES 127
VSLSL+ A + +DP EEKIP +H LDV V +QTLGVFSH P A ++
Sbjct: 62 QVSLSLTPAVLALDP-EEKIPTEHVLDVSQVTKQTLGVFSHMAPAEAAAAAAAAAAAADN 120
Query: 128 EKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH- 186
EKL +EG+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQNYKPV +H H
Sbjct: 121 EKLYMEGRIVQKLECRPIADTCYMKLKLESIRKASEPQRRVQPIDKIVQNYKPVKDHAHN 180
Query: 187 -----------------------------------------------LTYLKEILKEVCN 199
++YLKEILK+VC+
Sbjct: 181 IEYRERKKAEGKKARDDKNAVMDMLFNAFEKHQYYNIKDLVKITNQPISYLKEILKDVCD 240
Query: 200 YNLKNPHKNMWELKPEYRCY 219
YN+KNPHKNMWELK EYR Y
Sbjct: 241 YNMKNPHKNMWELKKEYRHY 260
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 204 MLFNAFEKHQYYNIKDLVKITNQPISYL 231
>gi|321464705|gb|EFX75711.1| hypothetical protein DAPPUDRAFT_306632 [Daphnia pulex]
Length = 272
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/246 (50%), Positives = 157/246 (63%), Gaps = 50/246 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-D 86
++++ ASRGVWLVKVPKY++++W+K PGNI AG+L I R GQK V L LSEA MC+ +
Sbjct: 27 MEMSSASRGVWLVKVPKYISSRWDKCPGNITAGQLNITRVQGQKSQVKLILSEAIMCLQE 86
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
EE IPK+H L V + QTLGVFS P ++ + E+EK++ EGK+ QKLECRP A
Sbjct: 87 KGEEPIPKEHGLIVSHITSQTLGVFSQQTTPATTNSPM-ETEKIIFEGKVAQKLECRPTA 145
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------------- 186
++ YMKLK DS+IKA+QP R VK LD++VQ+YKP+S+HKH
Sbjct: 146 NASYMKLKRDSLIKAAQPTRIVKQLDRVVQSYKPISDHKHNKEFDEKKKAEGKKARDDKG 205
Query: 187 ----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+TYLKEILK+VC YNLKNPHKNMWELKPEYR
Sbjct: 206 KVMDMLFAAFEKHQYYNIKDLVKLTNQPVTYLKEILKDVCVYNLKNPHKNMWELKPEYRH 265
Query: 219 YKEEEK 224
YK+E+K
Sbjct: 266 YKDEDK 271
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLFAAFEKHQYYNIKDLVK+T QP+ L V+ +K P N WE P
Sbjct: 210 MLFAAFEKHQYYNIKDLVKLTNQPVTYLKEILKDVCVYNLKNPH--KNMWELKP 261
>gi|194741034|ref|XP_001952994.1| GF17437 [Drosophila ananassae]
gi|190626053|gb|EDV41577.1| GF17437 [Drosophila ananassae]
Length = 281
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 162/262 (61%), Gaps = 61/262 (23%)
Query: 15 KDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVV 74
KD V+I + +LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK V
Sbjct: 6 KDKVQIIDK---DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQV 62
Query: 75 SLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPV--------NPDA-IVP 125
SLSL+ A + +DP EEKIP +H LDV V +QTLGVFSH N A +
Sbjct: 63 SLSLTPAVLALDP-EEKIPTEHVLDVSQVTKQTLGVFSHMSQAEMAANNGKENSTAPALS 121
Query: 126 ESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHK 185
++EKL +EG+IVQKLECRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H
Sbjct: 122 DNEKLYMEGRIVQKLECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHA 181
Query: 186 H------------------------------------------------LTYLKEILKEV 197
H ++YLKEILK+V
Sbjct: 182 HNIEYRERKKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 198 CNYNLKNPHKNMWELKPEYRCY 219
C+YN+KNPHKNMWELK EYR Y
Sbjct: 242 CDYNMKNPHKNMWELKKEYRHY 263
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 207 MLFHAFEKHQYYNIKDLVKITNQPISYL 234
>gi|450771|gb|AAA81888.1| dTFIIF30 [Drosophila melanogaster]
Length = 276
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/245 (49%), Positives = 154/245 (62%), Gaps = 53/245 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVP----ESEKLMLEGKIVQKLEC 142
P EEKIP +H LDV V +QTLG + P+ +P ++EKL +EG+IVQKLEC
Sbjct: 75 P-EEKIPTEHILDVSQVTKQTLGYSRTWHRPMARRTRLPRRHSDNEKLYMEGRIVQKLEC 133
Query: 143 RPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH---------------- 186
RP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 RPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKAR 193
Query: 187 --------------------------------LTYLKEILKEVCNYNLKNPHKNMWELKP 214
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 DDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELKK 253
Query: 215 EYRCY 219
EYR Y
Sbjct: 254 EYRHY 258
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 202 MLFHAFEKHQYYNIKDLVKITNQPISYL 229
>gi|193620369|ref|XP_001951556.1| PREDICTED: general transcription factor IIF subunit 2-like
[Acyrthosiphon pisum]
Length = 257
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 150/251 (59%), Gaps = 51/251 (20%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRN-PGQKPVVSLSLSEATMCV 85
+LD+++A +WLVKVPKYVA+KW+ PG+++ GK+K+ PG++P +SL LSEA +C+
Sbjct: 5 SLDVSKAGNALWLVKVPKYVADKWDNAPGSLDVGKIKVTNTIPGKRPDISLHLSEAVLCL 64
Query: 86 DP--NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
D N E IPK +LDV QT+ S + NPDA+V E+++L + GKI QKLECR
Sbjct: 65 DGEKNNEPIPKSFKLDVSHFTSQTMVALSEHRMSYNPDAVVQETDRLAILGKISQKLECR 124
Query: 144 PYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH----------------- 186
P D YM LK +I KA P RQV+ LDK+VQN+KP+S+HKH
Sbjct: 125 PIGDQVYMDLKKQAIRKAHIPTRQVQKLDKVVQNFKPISDHKHNIEYNEKKKSEGKKARD 184
Query: 187 -------------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPE 215
+ YLKEILKEVCNYNLK+PHKNMWELKPE
Sbjct: 185 DKDAVMAMLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNYNLKHPHKNMWELKPE 244
Query: 216 YRCYKEEEKKE 226
YR YKE+E E
Sbjct: 245 YRHYKEQEDNE 255
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLF AFEKHQYYNIKDLV +TKQP+V N +L + +W +K P+Y
Sbjct: 192 MLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNYNLKHPHKNMWELK-PEY 245
>gi|239790566|dbj|BAH71836.1| ACYPI008218 [Acyrthosiphon pisum]
Length = 257
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 150/251 (59%), Gaps = 51/251 (20%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRN-PGQKPVVSLSLSEATMCV 85
+LD+++A +WLVKVPKYVA+KW+ PG+++ GK+K+ PG++P +SL LSEA +C+
Sbjct: 5 SLDVSKAGNALWLVKVPKYVADKWDNAPGSLDVGKIKVTNTIPGKRPDISLHLSEAVLCL 64
Query: 86 DP--NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
D + E IPK +LDV QT+ S + NPDA+V E+++L + GKI QKLECR
Sbjct: 65 DGEKSNEPIPKSFKLDVSHFTSQTMVALSEHRMSYNPDAVVQETDRLAILGKISQKLECR 124
Query: 144 PYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH----------------- 186
P D YM LK +I KA P RQV+ LDK+VQN+KP+S+HKH
Sbjct: 125 PIGDQVYMDLKKQAIRKAHIPTRQVQKLDKVVQNFKPISDHKHNIEYNEKKKSEGKKARD 184
Query: 187 -------------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPE 215
+ YLKEILKEVCNYNLK+PHKNMWELKPE
Sbjct: 185 DKDAVMAMLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNYNLKHPHKNMWELKPE 244
Query: 216 YRCYKEEEKKE 226
YR YKE+E E
Sbjct: 245 YRHYKEQEDNE 255
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKY 45
MLF AFEKHQYYNIKDLV +TKQP+V N +L + +W +K P+Y
Sbjct: 192 MLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNYNLKHPHKNMWELK-PEY 245
>gi|442759999|gb|JAA72158.1| Putative transcription initiation factor iif small subunit rap30
[Ixodes ricinus]
Length = 254
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 143/248 (57%), Gaps = 52/248 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LD T A+RGVWLVKVPKY+A++W K P EAG+LKI + P K + +LS+ + +
Sbjct: 8 LDCTNAARGVWLVKVPKYIASRWNKAPPMSEAGRLKITKGPNGKTDIRFTLSDECVNMKD 67
Query: 88 NEEK--IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPY 145
EK IPK+HR + ++ Q L VFS V D + + K+ LEG +VQK ECRP
Sbjct: 68 VTEKSTIPKEHRFVISNISNQNLAVFSQ--NKVVEDGVEHSTGKVCLEGHVVQKGECRPM 125
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------------- 186
D YM+LK +I+KASQP+RQVK LD+IVQNYKPV++HKH
Sbjct: 126 GDDRYMQLKRQTILKASQPIRQVKQLDRIVQNYKPVADHKHNLEFEQKKKAEGKKAREDK 185
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+ YLKEILKE+CNYN KNPHKNMWELKPEYR
Sbjct: 186 DKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICNYNAKNPHKNMWELKPEYR 245
Query: 218 CYKEEEKK 225
YK++E K
Sbjct: 246 HYKDQEAK 253
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
MLF+AFEKHQYYNIKDL KIT+QP+
Sbjct: 191 MLFSAFEKHQYYNIKDLEKITRQPV 215
>gi|241829140|ref|XP_002414741.1| transcription initiation factor IIF, small subunit, putative
[Ixodes scapularis]
gi|215508953|gb|EEC18406.1| transcription initiation factor IIF, small subunit, putative
[Ixodes scapularis]
Length = 254
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 143/248 (57%), Gaps = 52/248 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
LD T A+RGVWLVKVPKY+A++W K P EAG+LKI + P K + +LS+ + +
Sbjct: 8 LDCTNAARGVWLVKVPKYIASRWNKAPPMSEAGRLKITKGPNGKTDIRFTLSDECVNMKD 67
Query: 88 NEEK--IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPY 145
EK IPK+HR + ++ Q L VFS V D + + K+ LEG +VQK ECRP
Sbjct: 68 VTEKSTIPKEHRFVISNISNQNLAVFSQ--NKVVEDGVEHSTGKVCLEGHVVQKGECRPM 125
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------------- 186
D YM+LK +I+KASQP+RQVK LD+IVQNYKPV++HKH
Sbjct: 126 GDDRYMQLKRQTILKASQPVRQVKQLDRIVQNYKPVADHKHNLEFEQKKKAEGKKAREDK 185
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+ YLKEILKE+CNYN KNPHKNMWELKPEYR
Sbjct: 186 DKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICNYNAKNPHKNMWELKPEYR 245
Query: 218 CYKEEEKK 225
YK++E K
Sbjct: 246 HYKDQEAK 253
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
MLF+AFEKHQYYNIKDL KIT+QP+
Sbjct: 191 MLFSAFEKHQYYNIKDLEKITRQPV 215
>gi|346469073|gb|AEO34381.1| hypothetical protein [Amblyomma maculatum]
Length = 255
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 142/251 (56%), Gaps = 53/251 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPG-QKPVVSLSLSEATMCV 85
++D T A+RGVWLVKVPKY+A++W K P EAG+L+I + K + +LS+ + +
Sbjct: 7 DVDCTYAARGVWLVKVPKYIASRWSKAPPMSEAGRLRITKGGANSKSDIRFTLSDECVNM 66
Query: 86 -DP-NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
DP ++ IPK+HR + + Q L VFS V D S K+ LEG +VQK ECR
Sbjct: 67 KDPADKSAIPKEHRFVISNIANQNLAVFSQ--NKVVEDGTEHSSGKVYLEGHVVQKGECR 124
Query: 144 PYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH----------------- 186
P D YM+LK +KASQP+RQVK LD+IVQNYKPV++HKH
Sbjct: 125 PMGDDRYMQLKRQIFVKASQPVRQVKQLDRIVQNYKPVADHKHNLEFEQKKKAEGKKARE 184
Query: 187 -------------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPE 215
+ YLKEILKE+CNYN KNPHKNMWELKPE
Sbjct: 185 DKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICNYNAKNPHKNMWELKPE 244
Query: 216 YRCYKEEEKKE 226
YR YKE+E K+
Sbjct: 245 YRHYKEQEAKQ 255
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
MLF+AFEKHQYYNIKDL KIT+QP+
Sbjct: 192 MLFSAFEKHQYYNIKDLEKITRQPV 216
>gi|225717456|gb|ACO14574.1| Transcription initiation factor IIF subunit beta [Caligus clemensi]
Length = 275
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 142/263 (53%), Gaps = 70/263 (26%)
Query: 35 RGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV--------D 86
RGVWLVKVPKY++++WEK P N GKL+IV+ KP VS SL + +
Sbjct: 20 RGVWLVKVPKYISDRWEKAPDNEVVGKLRIVKRARAKPDVSFSLDDKIVAKREGTPESKT 79
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVN--PDAIVPESEKLMLEGKIVQKLECRP 144
+ IPK H+ V V QTLGVFS + PD ++ LEG++V+K ECRP
Sbjct: 80 STNQAIPKQHKFIVSNVMAQTLGVFSRLTSSASEGPD-------RVSLEGRVVKKAECRP 132
Query: 145 YADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH-------------------- 184
+D YM +K ++I+KA +P RQ LD+ V +YKP+SNH
Sbjct: 133 ISDKTYMSVKREAILKAIEPTRQTVQLDRAVNHYKPISNHAANIEHARRKKEEGKKSRDD 192
Query: 185 -------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWELKPEY 216
KH +T+LKE+LK VCNYNLKNPHKNMWELKPEY
Sbjct: 193 KEKVMERLFALFEKHQYYNIKDLVRETRQPITHLKEVLKGVCNYNLKNPHKNMWELKPEY 252
Query: 217 RCYK-EEEKKE----EATADDDD 234
R YK +EE KE E+++DD+D
Sbjct: 253 RHYKVDEEAKEKKGNESSSDDED 275
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNL 28
LFA FEKHQYYNIKDLV+ T+QPI +L
Sbjct: 200 LFALFEKHQYYNIKDLVRETRQPITHL 226
>gi|391326183|ref|XP_003737600.1| PREDICTED: general transcription factor IIF subunit 2-like
[Metaseiulus occidentalis]
Length = 266
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 129/245 (52%), Gaps = 55/245 (22%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
++D + A RGVWLVKVPKY+A KW+K EAG++KI R P ++ LS
Sbjct: 11 DVDCSNACRGVWLVKVPKYIAEKWKKAAPLSEAGRIKISRQPNGTNDITFKLSNVA---- 66
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
EEKIP DH+ + + +Q+L V+S VN D I K+ LEG IVQK ECRP
Sbjct: 67 -EEEKIPTDHKFVISNIQQQSLAVYSQ-PKAVNEDGIECGQGKICLEGSIVQKGECRPIG 124
Query: 147 -DSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKHLT----------------- 188
D YM LK I++ASQP R L+++VQN+KPV+ H H
Sbjct: 125 NDIHYMDLKRRKIMEASQPKRAAIGLERVVQNFKPVARHVHQVEYEARKKNEGKKARGDR 184
Query: 189 -------------------------------YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKE+LKEVCNYN+KNPH+NMWELKPEYR
Sbjct: 185 DQVLEMLFAAFEKHQYYNIKDLERITKQPAPFLKELLKEVCNYNVKNPHRNMWELKPEYR 244
Query: 218 CYKEE 222
YK+E
Sbjct: 245 HYKKE 249
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 11/55 (20%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQP----------IVNLDLTQASRGVWLVKVPKY 45
MLFAAFEKHQYYNIKDL +ITKQP + N ++ R +W +K P+Y
Sbjct: 190 MLFAAFEKHQYYNIKDLERITKQPAPFLKELLKEVCNYNVKNPHRNMWELK-PEY 243
>gi|441614423|ref|XP_003270182.2| PREDICTED: general transcription factor IIF subunit 2 [Nomascus
leucogenys]
Length = 312
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 126/207 (60%), Gaps = 20/207 (9%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G + VS +L+E +
Sbjct: 118 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANI 176
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 177 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 225
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKHLTYLKEILKEVCN 199
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++ YLKEILKE+
Sbjct: 226 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNVYLKEILKEIGV 285
Query: 200 YNLKNPHKNMWELKPEYRCYKEEEKKE 226
N+K HKN WELKPEYR Y+ EEK +
Sbjct: 286 QNVKGIHKNTWELKPEYRHYQGEEKSD 312
>gi|62955637|ref|NP_001017832.1| novel protein similar to H.sapiens GTF2F2, general transcription
factor IIF, polypeptide 2, 30kDa (GTF2F2, zgc:110187)
[Danio rerio]
gi|62202165|gb|AAH92783.1| Zgc:110187 [Danio rerio]
gi|182890810|gb|AAI65452.1| Zgc:110187 protein [Danio rerio]
Length = 256
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 129/251 (51%), Gaps = 69/251 (27%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
++DLT+A + GVWLVKVPKY++ +W K G E GKLKI + G K VVS +L+E
Sbjct: 7 DVDLTRAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLKIGKAQG-KTVVSFNLNEELTV 65
Query: 85 VDPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQK 139
VD + EKI P++H +Q V QTL VF+ S+K+ LEG +VQ+
Sbjct: 66 VDCSGEKISSVRSPREHPFTMQTVGGQTLAVFTE------------SSDKIALEGMVVQR 113
Query: 140 LECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH------------ 186
ECRP YMKLK I ++++PLR + L+K I NYKPVSNH H
Sbjct: 114 AECRPAVSESYMKLKKLQIEESTKPLRFSQRLEKAITTNYKPVSNHSHNLEYEKRKKEEG 173
Query: 187 ------------------------------------LTYLKEILKEVCNYNLKNPHKNMW 210
+ YLKEIL+E+ YN + PHK+ W
Sbjct: 174 KRARADKQKVLEMLFSAFEKHQFYNIRDLVDITKQPVIYLKEILREIGVYNSRGPHKSTW 233
Query: 211 ELKPEYRCYKE 221
ELKPEYR Y+E
Sbjct: 234 ELKPEYRHYQE 244
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQ+YNI+DLV ITKQP++ L GV+ + P + WE P
Sbjct: 186 MLFSAFEKHQFYNIRDLVDITKQPVIYLKEILREIGVYNSRGPH--KSTWELKP 237
>gi|126305072|ref|XP_001362176.1| PREDICTED: general transcription factor IIF subunit 2-like
[Monodelphis domestica]
Length = 261
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 135/256 (52%), Gaps = 58/256 (22%)
Query: 28 LDLTQASRG--VWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE--ATM 83
LDLT A + VWLVKVPKY++ +W K G E GKL+I +N G + VS +L+E A +
Sbjct: 7 LDLTGAKQNTRVWLVKVPKYLSQQWTKASGRGEVGKLRIAKNQG-RTEVSFTLNEELANI 65
Query: 84 C-VD--PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIV-PESEKLMLEGKIVQK 139
C +D P+ P++HR +Q V QTL VF+ P P+ + +L LEG +VQ+
Sbjct: 66 CDIDGKPSSVSAPREHRFHLQSVGGQTLTVFTESSPEGQPEGNSESRNNQLSLEGIVVQR 125
Query: 140 LECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH------------ 186
ECRP A YM+LK I ++S+P+R +HLDK + N+KPV+NH++
Sbjct: 126 AECRPAASENYMRLKRLQIEESSKPVRLAQHLDKAVTTNFKPVANHQNNIAYEKKKKEDG 185
Query: 187 ------------------------------------LTYLKEILKEVCNYNLKNPHKNMW 210
+ YLKE+L+E+ YN+K HKN W
Sbjct: 186 KRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPIIYLKELLREIGIYNVKGTHKNTW 245
Query: 211 ELKPEYRCYKEEEKKE 226
ELKPEYR Y+ +K +
Sbjct: 246 ELKPEYRHYQGGDKSD 261
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQPI+ L G++ VK N WE P
Sbjct: 198 MLFSAFEKHQYYNIKDLVDITKQPIIYLKELLREIGIYNVKGTH--KNTWELKP 249
>gi|390337008|ref|XP_784682.2| PREDICTED: general transcription factor IIF subunit 2-like
[Strongylocentrotus purpuratus]
Length = 199
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 15/201 (7%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE--ATM 83
+ LDLT ++R +WLVKVPKYVA +WEK N GK+++ + G KP +SL + E A
Sbjct: 5 MELDLTASARPIWLVKVPKYVAQRWEKSDKNGHIGKIRVGKKFG-KPDISLVMDERVAKT 63
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
+ P++ IP +H+L V T+ V+S ++KL +EGK+V++LECR
Sbjct: 64 KLTPDDPDIPVEHKLQVMSALPGTMMVYS-----------TGTTDKLSVEGKVVERLECR 112
Query: 144 PYADSCYMKLKLDSIIKASQPLRQVKHL-DKIVQNYKPVSNHKHLTYLKEILKEVCNYNL 202
P YM +K I A +P + + + D+ V YKP+S HK L YLKE+L+E+ Y+
Sbjct: 113 PVGSDSYMLMKRKQIELAHKPTKVTQQIKDRPVNAYKPISRHKELPYLKEMLQEIGTYHQ 172
Query: 203 KNPHKNMWELKPEYRCYKEEE 223
K PHK MWELK EYR YK E+
Sbjct: 173 KAPHKYMWELKAEYRHYKSEQ 193
>gi|343791023|ref|NP_001230557.1| general transcription factor IIF, polypeptide 2, 30kDa [Sus scrofa]
Length = 249
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 130/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEELANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
++YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQAEEKSD 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVSYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|318037396|ref|NP_001187504.1| general transcription factor IIf subunit 2 [Ictalurus punctatus]
gi|308323183|gb|ADO28728.1| general transcription factor IIf subunit 2 [Ictalurus punctatus]
Length = 265
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 134/262 (51%), Gaps = 64/262 (24%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
++DLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G K VS +L+E
Sbjct: 6 DVDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIGKNQG-KAEVSFTLNEDLTM 64
Query: 85 VDPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES------EKLMLE 133
++ EK+ P++H +Q V QTL VF+ DA S +K+ LE
Sbjct: 65 IESMGEKVSMVRAPREHPFTLQTVGGQTLAVFTE-TSSGQSDAEGSSSGTATGPDKIALE 123
Query: 134 GKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH-------- 184
G +VQ+ ECR A+ YM+LK I ++S+P R + LDK + NYKPV+NH
Sbjct: 124 GLVVQRAECRAAANEHYMRLKRLQIEESSKPHRFSQQLDKAVTTNYKPVANHAYNLDYEK 183
Query: 185 -------------------------KH---------------LTYLKEILKEVCNYNLKN 204
KH + YLKEIL+++ YN+K
Sbjct: 184 KKKEEGKRARADRQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKG 243
Query: 205 PHKNMWELKPEYRCYKEEEKKE 226
HKN WELKPEYR Y+ EEK +
Sbjct: 244 THKNTWELKPEYRHYQNEEKSD 265
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 202 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 253
>gi|301758318|ref|XP_002915010.1| PREDICTED: general transcription factor IIF subunit 2-like
[Ailuropoda melanoleuca]
gi|345788533|ref|XP_851466.2| PREDICTED: general transcription factor IIF subunit 2 [Canis lupus
familiaris]
gi|410947437|ref|XP_003980453.1| PREDICTED: general transcription factor IIF subunit 2 [Felis catus]
Length = 249
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSTPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGTHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGTH--KNTWELKP 237
>gi|31542922|ref|NP_112304.2| general transcription factor IIF subunit 2 [Rattus norvegicus]
gi|220891|dbj|BAA01516.1| RAP30 [Rattus norvegicus]
gi|60552080|gb|AAH91112.1| General transcription factor IIF, polypeptide 2 [Rattus norvegicus]
gi|149049981|gb|EDM02305.1| general transcription factor IIF, polypeptide 2, isoform CRA_b
[Rattus norvegicus]
Length = 249
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQTEEKSD 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|291392998|ref|XP_002713006.1| PREDICTED: general transcription factor IIF, polypeptide 2, 30kDa
[Oryctolagus cuniculus]
Length = 249
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDKIV NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKIVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQQVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|164448676|ref|NP_001096603.1| general transcription factor IIF, polypeptide 2a isoform 2 [Danio
rerio]
gi|156230595|gb|AAI52268.1| MGC174761 protein [Danio rerio]
Length = 249
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+DLT A + GVWLVKVPKY++ +W K G E GKL+I +N G K VS +L+E +
Sbjct: 7 VDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQG-KAEVSFTLNEELTTI 65
Query: 86 DPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
+ EK P++H +Q V QTL VF+ S+K+ LEG +VQ+
Sbjct: 66 ETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTE-----------NSSDKIALEGVVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH--------------- 184
ECRP YM+LK I + S+PLR + LDK + NYKPV+NH
Sbjct: 115 ECRPAVSESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPVANHAYNLDYEKRKKEEGK 174
Query: 185 ------------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWE 211
KH + YLKEIL+++ YN+K HKN WE
Sbjct: 175 RARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQSEEKSD 249
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQ+YNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 186 MLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 237
>gi|387019065|gb|AFJ51650.1| General transcription factor IIF subunit 2-like [Crotalus
adamanteus]
Length = 262
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 129/257 (50%), Gaps = 59/257 (22%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + G+WLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGMWLVKVPKYLSQQWNKALGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 DPNEEK-----IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES--EKLMLEGKIVQ 138
D K P+DH +Q V QTL VF+ D S EKL LEG +VQ
Sbjct: 66 DGIGGKATSISAPRDHPFLLQNVGGQTLTVFTESSGESQTDEKSDSSNNEKLSLEGIVVQ 125
Query: 139 KLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH----------- 186
+ ECRP A+ YMKLK I ++S+P+ LDK + NYKPV+NH++
Sbjct: 126 RAECRPAANENYMKLKRLQIEESSKPVSWTMQLDKAVTTNYKPVANHQYNIEYDKKKKED 185
Query: 187 -------------------------------------LTYLKEILKEVCNYNLKNPHKNM 209
+ YLKEIL+E+ YN K PHK+
Sbjct: 186 GKRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNFKGPHKST 245
Query: 210 WELKPEYRCYKEEEKKE 226
WELKPEYR Y+ E+K +
Sbjct: 246 WELKPEYRHYQNEDKSD 262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ K P + WE P
Sbjct: 199 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNFKGPH--KSTWELKP 250
>gi|344281782|ref|XP_003412656.1| PREDICTED: general transcription factor IIF subunit 2-like
[Loxodonta africana]
Length = 249
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL+E+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILREIGIQNVKGTHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L + R + + V N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYLK--EILREIGIQNVKGTHKNTWELKP 237
>gi|432851973|ref|XP_004067133.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Oryzias latipes]
Length = 249
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 130/256 (50%), Gaps = 67/256 (26%)
Query: 27 NLDLTQA--SRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVR--NPGQKPVVSLSLSEAT 82
++DLT A + GVWLVKVPKY+A +W K G E GKL+I++ N G KP VS +L+E
Sbjct: 6 DVDLTGAKLNTGVWLVKVPKYLAQQWAKATGRGEVGKLRIIKKGNLG-KPEVSFTLNEEL 64
Query: 83 MCVDPNEEKI---PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQK 139
++ E+K P+DH +Q V Q L VF+ S+K+ LEG +VQ+
Sbjct: 65 TIIEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTE-----------SSSDKIALEGVVVQR 113
Query: 140 LECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------------- 186
ECRP YMKLK I ++S+P R + L K V NYKPV+NH++
Sbjct: 114 AECRPAVSESYMKLKRLQIEESSKPSRLSQQLSKPVTNYKPVANHEYNREYEKKKKEEGK 173
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL+++ YN+K HKN WE
Sbjct: 174 RARADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHKNTWE 233
Query: 212 LKPEYRCYKEEEKKEE 227
LKPEYR Y+ EK +E
Sbjct: 234 LKPEYRHYQPGEKTDE 249
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 185 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 236
>gi|313569846|ref|NP_001002127.2| general transcription factor IIF, polypeptide 2a isoform 1 [Danio
rerio]
Length = 265
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 130/261 (49%), Gaps = 64/261 (24%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+DLT A + GVWLVKVPKY++ +W K G E GKL+I +N G K VS +L+E +
Sbjct: 7 VDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQG-KAEVSFTLNEELTTI 65
Query: 86 DPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES------EKLMLEG 134
+ EK P++H +Q V QTL VF+ DA S +K+ LEG
Sbjct: 66 ETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTEN-SSGQSDAEASGSGTGSGPDKIALEG 124
Query: 135 KIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH--------- 184
+VQ+ ECRP YM+LK I + S+PLR + LDK + NYKPV+NH
Sbjct: 125 VVVQRAECRPAVSESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPVANHAYNLDYEKR 184
Query: 185 ------------------------KH---------------LTYLKEILKEVCNYNLKNP 205
KH + YLKEIL+++ YN+K
Sbjct: 185 KKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGT 244
Query: 206 HKNMWELKPEYRCYKEEEKKE 226
HKN WELKPEYR Y+ EEK +
Sbjct: 245 HKNTWELKPEYRHYQSEEKSD 265
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQ+YNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 202 MLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 253
>gi|296203835|ref|XP_002749072.1| PREDICTED: general transcription factor IIF subunit 2 [Callithrix
jacchus]
gi|403286252|ref|XP_003934413.1| PREDICTED: general transcription factor IIF subunit 2 [Saimiri
boliviensis boliviensis]
Length = 249
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVK--GIHKNTWELKP 237
>gi|354476267|ref|XP_003500346.1| PREDICTED: general transcription factor IIF subunit 2-like
[Cricetulus griseus]
gi|344240972|gb|EGV97075.1| General transcription factor IIF subunit 2 [Cricetulus griseus]
Length = 249
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQAEEKSD 249
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|348583519|ref|XP_003477520.1| PREDICTED: general transcription factor IIF subunit 2-like [Cavia
porcellus]
Length = 249
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWTKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKND 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|149730248|ref|XP_001491541.1| PREDICTED: general transcription factor IIF subunit 2-like [Equus
caballus]
Length = 249
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVLYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L L + + + + V N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPV--LYLKEILKEIGIQNVKGIHKNTWELKP 237
>gi|84000109|ref|NP_001033153.1| general transcription factor IIF subunit 2 [Bos taurus]
gi|426236297|ref|XP_004012106.1| PREDICTED: general transcription factor IIF subunit 2 [Ovis aries]
gi|118573901|sp|Q2T9L9.1|T2FB_BOVIN RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|83405774|gb|AAI11361.1| General transcription factor IIF, polypeptide 2, 30kDa [Bos taurus]
gi|296481803|tpg|DAA23918.1| TPA: general transcription factor IIF subunit 2 [Bos taurus]
Length = 249
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 131/255 (51%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A+ YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAANENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
++YLK+ILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQVEEKSD 249
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVK--GIHKNTWELKP 237
>gi|417397839|gb|JAA45953.1| Putative proteinral transcription factor iif polypeptide 2 30kda
[Desmodus rotundus]
Length = 249
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NY+PV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYRPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|395834851|ref|XP_003790402.1| PREDICTED: general transcription factor IIF subunit 2 [Otolemur
garnettii]
Length = 249
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ ++KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSTPREHPFVLQSVGGQTLTVFTE-----------SSTDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVK--GIHKNTWELKP 237
>gi|400922|sp|Q01750.1|T2FB_RAT RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta; AltName: Full=Transcription initiation
factor RAP30
gi|206551|gb|AAA42005.1| helicase [Rattus norvegicus]
Length = 249
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+R + DK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQTEEKSD 249
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|291190817|ref|NP_001167406.1| Transcription initiation factor IIF subunit beta [Salmo salar]
gi|223648348|gb|ACN10932.1| Transcription initiation factor IIF subunit beta [Salmo salar]
Length = 257
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 130/261 (49%), Gaps = 66/261 (25%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+DLT A + GVWLVKVPKY++ +W K G E GKL+I +N G K V+ +L+E +
Sbjct: 7 VDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIGKNQG-KAEVAFTLNEDLTMI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
D P+ + P+DH +Q V QTL VF+ + E++ LEG +VQ+
Sbjct: 66 DSLGDKPSGVQAPRDHPFTMQTVGGQTLAVFTETQSESS-------KERISLEGLVVQRA 118
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH------------- 186
ECRP YMKLK I + S+PLR + L+K + NYKPV+NH +
Sbjct: 119 ECRPAVSESYMKLKRLQIEELSKPLRLSQQLEKAVTTNYKPVANHSYNLEYDRKKKDEGK 178
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
++YLKEIL+++ YN+K HKN WE
Sbjct: 179 RARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILRDIGIYNVKGTHKNTWE 238
Query: 212 LKPEYRCYKEEEKKEEATADD 232
LKPEYR Y+ E EE DD
Sbjct: 239 LKPEYRHYQGGE--EEKETDD 257
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP+ L G++ VK N WE P
Sbjct: 190 MLFSAFEKHQYYNIKDLVDITKQPVSYLKEILRDIGIYNVKGTH--KNTWELKP 241
>gi|39930425|ref|NP_081092.1| general transcription factor IIF subunit 2 [Mus musculus]
gi|62901035|sp|Q8R0A0.1|T2FB_MOUSE RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|20072603|gb|AAH27173.1| General transcription factor IIF, polypeptide 2 [Mus musculus]
gi|74201290|dbj|BAE26104.1| unnamed protein product [Mus musculus]
gi|148703868|gb|EDL35815.1| general transcription factor IIF, polypeptide 2, isoform CRA_c [Mus
musculus]
Length = 249
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQTEEKSD 249
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>gi|388454665|ref|NP_001253640.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|402901916|ref|XP_003913880.1| PREDICTED: general transcription factor IIF subunit 2 [Papio
anubis]
gi|380786557|gb|AFE65154.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|383413475|gb|AFH29951.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|384946658|gb|AFI36934.1| general transcription factor IIF subunit 2 [Macaca mulatta]
Length = 249
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 129/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + L+K+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLEKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVK--GIHKNTWELKP 237
>gi|410912909|ref|XP_003969931.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 249
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 130/256 (50%), Gaps = 65/256 (25%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQ-KPVVSLSLSEATM 83
++DLT A + GVWLVKVPKY++ +WEK G E GKL+I + Q KP VS +L+E
Sbjct: 5 DMDLTGAKQNTGVWLVKVPKYLSQQWEKATGRGEVGKLQICKKGSQGKPEVSFNLNEELT 64
Query: 84 CVDPNEEKI---PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
++ E+K P +H+ +Q V Q L VF+ S+KL LEG +VQ+
Sbjct: 65 VIEGLEKKTVSAPHEHKFTMQSVGGQILAVFTE-----------TTSDKLALEGMVVQRA 113
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH-------------- 186
+CRP + YM+LK I ++S+P R + + V NYKPV+NH +
Sbjct: 114 DCRPAVNENYMRLKRLQIEESSKPTRLSQQIQNPVTNYKPVANHSYNLEYEKKKKEEGKR 173
Query: 187 ----------------------------------LTYLKEILKEVCNYNLKNPHKNMWEL 212
+ YLKEIL+++ +YN+K HKN WEL
Sbjct: 174 ARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGHYNIKGTHKNTWEL 233
Query: 213 KPEYRCYKEEEKKEEA 228
+PEYR Y+ EE+K +
Sbjct: 234 RPEYRHYQGEEEKTDG 249
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L + R + + N WE P
Sbjct: 184 MLFSAFEKHQYYNIKDLVDITKQPVIYLK--EILRDIGHYNIKGTHKNTWELRP 235
>gi|47940041|gb|AAH71444.1| General transcription factor IIF, polypeptide 2 [Danio rerio]
Length = 265
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 129/261 (49%), Gaps = 64/261 (24%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+DLT A + GVWLVKVPKY++ +W K G E GKL+I +N G K VS +L+E +
Sbjct: 7 VDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQG-KAEVSFTLNEELTTI 65
Query: 86 DPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES------EKLMLEG 134
+ EK P++H +Q V QTL VF+ DA S +K+ L G
Sbjct: 66 ETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTEN-SSGQSDAEASGSGTGSGPDKIALGG 124
Query: 135 KIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH--------- 184
+VQ+ ECRP YM+LK I + S+PLR + LDK + NYKPV+NH
Sbjct: 125 VVVQRAECRPAVSESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPVANHAYNLDYEKR 184
Query: 185 ------------------------KH---------------LTYLKEILKEVCNYNLKNP 205
KH + YLKEIL+++ YN+K
Sbjct: 185 KKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGT 244
Query: 206 HKNMWELKPEYRCYKEEEKKE 226
HKN WELKPEYR Y+ EEK +
Sbjct: 245 HKNTWELKPEYRHYQSEEKSD 265
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQ+YNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 202 MLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 253
>gi|118084831|ref|XP_417039.2| PREDICTED: general transcription factor IIF subunit 2 isoform 2
[Gallus gallus]
Length = 262
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 129/257 (50%), Gaps = 59/257 (22%)
Query: 28 LDLT--QASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT + + G+WLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGVKQNTGMWLVKVPKYLSQQWSKASGRGEVGKLRIAKNQG-RTEVSFTLNEELASI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES--EKLMLEGKIVQ 138
P P++H +Q V QTL VF+ P+ +KL LEG +VQ
Sbjct: 66 SDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTESQPEEKSESGSYDKLSLEGIVVQ 125
Query: 139 KLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH----------- 186
+ ECRP A YMKLK I ++S+P+R + LDK + NYKPV+NH++
Sbjct: 126 RAECRPAASENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPVANHQYNIEYEKKKKED 185
Query: 187 -------------------------------------LTYLKEILKEVCNYNLKNPHKNM 209
+ YLKEIL+E+ YN+K HKN
Sbjct: 186 GKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHKNT 245
Query: 210 WELKPEYRCYKEEEKKE 226
WELKPEYR Y+ E+K +
Sbjct: 246 WELKPEYRHYQVEDKSD 262
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 199 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 250
>gi|449280331|gb|EMC87658.1| General transcription factor IIF subunit 2 [Columba livia]
Length = 262
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 130/257 (50%), Gaps = 59/257 (22%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + G+WLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGMWLVKVPKYLSQQWNKASGRGEVGKLRITKNQG-RTEVSFTLNEELANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNP--DAIVPESEKLMLEGKIVQ 138
P P++H +Q V QTL VF+ P + S+KL LEG +VQ
Sbjct: 66 SDIGGKPTSVSAPREHPFILQSVGGQTLTVFTESSVESQPDEKSESSSSDKLALEGIVVQ 125
Query: 139 KLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH----------- 186
+ ECRP A YMKLK I ++S+P+R + LDK + NYKPV+NH++
Sbjct: 126 RAECRPAASENYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPVANHQYNIEYEKKKKED 185
Query: 187 -------------------------------------LTYLKEILKEVCNYNLKNPHKNM 209
+ YLKEIL+E+ YN+K HKN
Sbjct: 186 GKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHKNT 245
Query: 210 WELKPEYRCYKEEEKKE 226
WELKPEYR Y+ EEK +
Sbjct: 246 WELKPEYRHYQGEEKSD 262
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 199 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 250
>gi|348516620|ref|XP_003445836.1| PREDICTED: general transcription factor IIF subunit 2-like
[Oreochromis niloticus]
Length = 266
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 131/260 (50%), Gaps = 60/260 (23%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQ-KPVVSLSLSEATMC 84
+DLT A + GVWLVKVPKY++ +W K G E GKL+I + Q KP VS +L+E
Sbjct: 7 VDLTGAKQNTGVWLVKVPKYLSQQWAKATGRGEVGKLRICKKGNQGKPEVSFTLNEELTV 66
Query: 85 VDPNEEKI---PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES-----EKLMLEGKI 136
+D E+K P++H +Q V QTL VF+ + + +K+ LEG +
Sbjct: 67 IDGIEDKTVSAPREHPFTMQSVGGQTLAVFTETSSERSDGSSSGSGAGTGPDKITLEGVV 126
Query: 137 VQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH----------- 184
VQ+ ECRP YM+LK I ++S+P R + LDK + NYKPV+NH
Sbjct: 127 VQRAECRPAVSESYMRLKRLQIEESSKPARLSQQLDKAVTNNYKPVANHDYNREYERKKK 186
Query: 185 ----------------------KH---------------LTYLKEILKEVCNYNLKNPHK 207
KH + YLKEIL+++ YN+K HK
Sbjct: 187 EEGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHK 246
Query: 208 NMWELKPEYRCYKEEEKKEE 227
N WEL+PEYR Y+ EEK +E
Sbjct: 247 NTWELRPEYRHYQGEEKTDE 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 202 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELRP 253
>gi|126337679|ref|XP_001363893.1| PREDICTED: general transcription factor IIF subunit 2-like
[Monodelphis domestica]
Length = 249
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQG-RTEVSFTLNEELANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFLLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK + N+KPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKAVTTNFKPVANHQNNIEYEKKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL+E+ YN+K HKN WE
Sbjct: 175 RARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ E+K +
Sbjct: 235 LKPEYRHYQGEDKSD 249
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 237
>gi|432851975|ref|XP_004067134.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
3 [Oryzias latipes]
Length = 242
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 126/254 (49%), Gaps = 70/254 (27%)
Query: 27 NLDLTQA--SRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
++DLT A + GVWLVKVPKY+A +W K G E GKL+I++ VS +L+E
Sbjct: 6 DVDLTGAKLNTGVWLVKVPKYLAQQWAKATGRGEVGKLRIIK------YVSFTLNEELTI 59
Query: 85 VDPNEEKI---PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLE 141
++ E+K P+DH +Q V Q L VF+ S+K+ LEG +VQ+ E
Sbjct: 60 IEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTE-----------SSSDKIALEGVVVQRAE 108
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP YMKLK I ++S+P R + L K V NYKPV+NH++
Sbjct: 109 CRPAVSESYMKLKRLQIEESSKPSRLSQQLSKPVTNYKPVANHEYNREYEKKKKEEGKRA 168
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
+ YLKEIL+++ YN+K HKN WELK
Sbjct: 169 RADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHKNTWELK 228
Query: 214 PEYRCYKEEEKKEE 227
PEYR Y+ EK +E
Sbjct: 229 PEYRHYQPGEKTDE 242
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 178 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 229
>gi|363729437|ref|XP_003640649.1| PREDICTED: general transcription factor IIF subunit 2 isoform 1
[Gallus gallus]
Length = 249
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLT--QASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT + + G+WLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGVKQNTGMWLVKVPKYLSQQWSKASGRGEVGKLRIAKNQG-RTEVSFTLNEELASI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ ++KL LEG +VQ+
Sbjct: 66 SDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTE-----------SSTDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+R + LDK + NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPVANHQYNIEYEKKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL+E+ YN+K HKN WE
Sbjct: 175 RARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ E+K +
Sbjct: 235 LKPEYRHYQVEDKSD 249
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 237
>gi|4758488|ref|NP_004119.1| general transcription factor IIF subunit 2 [Homo sapiens]
gi|114651459|ref|XP_001154142.1| PREDICTED: uncharacterized protein LOC741868 [Pan troglodytes]
gi|297693990|ref|XP_002824282.1| PREDICTED: general transcription factor IIF subunit 2 [Pongo
abelii]
gi|397472363|ref|XP_003807716.1| PREDICTED: general transcription factor IIF subunit 2 [Pan
paniscus]
gi|426375361|ref|XP_004054510.1| PREDICTED: general transcription factor IIF subunit 2 [Gorilla
gorilla gorilla]
gi|464519|sp|P13984.2|T2FB_HUMAN RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=General transcription factor IIF 30 kDa subunit;
AltName: Full=Transcription initiation factor IIF
subunit beta; Short=TFIIF-beta; AltName:
Full=Transcription initiation factor RAP30
gi|35865|emb|CAA34775.1| 30kb subunit of RAB30 /74 [Homo sapiens]
gi|35867|emb|CAA42419.1| RAP30 [Homo sapiens]
gi|12804689|gb|AAH01771.1| General transcription factor IIF, polypeptide 2, 30kDa [Homo
sapiens]
gi|54695920|gb|AAV38332.1| general transcription factor IIF, polypeptide 2, 30kDa [Homo
sapiens]
gi|61356697|gb|AAX41274.1| general transcription factor IIF polypeptide 2 [synthetic
construct]
gi|119629133|gb|EAX08728.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_c [Homo sapiens]
gi|119629134|gb|EAX08729.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_c [Homo sapiens]
gi|158256522|dbj|BAF84234.1| unnamed protein product [Homo sapiens]
gi|190689903|gb|ACE86726.1| general transcription factor IIF, polypeptide 2, 30kDa protein
[synthetic construct]
gi|190691275|gb|ACE87412.1| general transcription factor IIF, polypeptide 2, 30kDa protein
[synthetic construct]
gi|261859240|dbj|BAI46142.1| general transcription factor IIF, polypeptide 2, 30kDa [synthetic
construct]
gi|410217096|gb|JAA05767.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410248632|gb|JAA12283.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410288620|gb|JAA22910.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410336085|gb|JAA36989.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
Length = 249
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 127/255 (49%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVK--GIHKNTWELKP 237
>gi|62901918|gb|AAY18910.1| RAP30 [synthetic construct]
Length = 273
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 127/255 (49%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G + VS +L+E +
Sbjct: 31 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANI 89
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 90 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 138
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 139 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 198
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 199 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 258
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 259 LKPEYRHYQGEEKSD 273
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 210 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVK--GIHKNTWELKP 261
>gi|432851971|ref|XP_004067132.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Oryzias latipes]
Length = 267
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 132/263 (50%), Gaps = 63/263 (23%)
Query: 27 NLDLTQA--SRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVR--NPGQKPVVSLSLSEAT 82
++DLT A + GVWLVKVPKY+A +W K G E GKL+I++ N G KP VS +L+E
Sbjct: 6 DVDLTGAKLNTGVWLVKVPKYLAQQWAKATGRGEVGKLRIIKKGNLG-KPEVSFTLNEEL 64
Query: 83 MCVDPNEEKI---PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES-------EKLML 132
++ E+K P+DH +Q V Q L VF+ + + S +K+ L
Sbjct: 65 TIIEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSGQSEERSDGSSSGAGSGPDKIAL 124
Query: 133 EGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH------ 186
EG +VQ+ ECRP YMKLK I ++S+P R + L K V NYKPV+NH++
Sbjct: 125 EGVVVQRAECRPAVSESYMKLKRLQIEESSKPSRLSQQLSKPVTNYKPVANHEYNREYEK 184
Query: 187 ------------------------------------------LTYLKEILKEVCNYNLKN 204
+ YLKEIL+++ YN+K
Sbjct: 185 KKKEEGKRARADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKG 244
Query: 205 PHKNMWELKPEYRCYKEEEKKEE 227
HKN WELKPEYR Y+ EK +E
Sbjct: 245 THKNTWELKPEYRHYQPGEKTDE 267
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 203 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 254
>gi|326914113|ref|XP_003203372.1| PREDICTED: general transcription factor IIF subunit 2-like
[Meleagris gallopavo]
Length = 262
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 129/257 (50%), Gaps = 59/257 (22%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + G+WLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGMWLVKVPKYLSQQWSKASGRGEVGKLRIAKNQG-RTEVSFTLNEELASI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES--EKLMLEGKIVQ 138
P P++H +Q V QTL VF+ + S +KL LEG +VQ
Sbjct: 66 SDIGGKPASVSAPREHPFLLQSVGGQTLTVFTESSTENQSEEKSESSSYDKLSLEGIVVQ 125
Query: 139 KLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH----------- 186
+ ECRP A YMKLK I ++S+P+R + LDK + NYKPV+NH++
Sbjct: 126 RAECRPAASENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPVANHQYNIEYEKKKKED 185
Query: 187 -------------------------------------LTYLKEILKEVCNYNLKNPHKNM 209
+ YLKEIL+E+ YN+K HKN
Sbjct: 186 GKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHKNT 245
Query: 210 WELKPEYRCYKEEEKKE 226
WELKPEYR Y+ E+K +
Sbjct: 246 WELKPEYRHYQVEDKSD 262
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 199 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 250
>gi|148231943|ref|NP_001082266.1| general transcription factor IIF subunit 2 [Xenopus laevis]
gi|464520|sp|Q03123.1|T2FB_XENLA RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta; AltName: Full=Transcription initiation
factor RAP30
gi|65135|emb|CAA78835.1| transcription factor RAP30 [Xenopus laevis]
gi|49256181|gb|AAH73677.1| LOC398333 protein [Xenopus laevis]
Length = 264
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 129/258 (50%), Gaps = 60/258 (23%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDL A + G+WLVK+PKY+A +W K G E GKL+IV+N G K VS +L+E +
Sbjct: 8 LDLNGAKQNTGMWLVKLPKYLAQQWAKATGRGEVGKLRIVKNQG-KTEVSFTLNEELASI 66
Query: 86 DPNEEK-------IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES-EKLMLEGKIV 137
K P++H +Q V QTL V + + + D +KL LEG +V
Sbjct: 67 QDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLALEGIVV 126
Query: 138 QKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH---------- 186
+ ECRP A YM++K I ++S+P RQ + L+K + NYKPVSNH++
Sbjct: 127 HRAECRPAASDNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPVSNHQYNIEYEKKKKD 186
Query: 187 --------------------------------------LTYLKEILKEVCNYNLKNPHKN 208
+TYLKEIL+++ YN+K HKN
Sbjct: 187 DGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKN 246
Query: 209 MWELKPEYRCYKEEEKKE 226
WELKPEYR Y+ E+K +
Sbjct: 247 TWELKPEYRHYQGEDKSD 264
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP+ L G++ +K N WE P
Sbjct: 201 MLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTH--KNTWELKP 252
>gi|45360629|ref|NP_988987.1| general transcription factor IIF, polypeptide 2, 30kDa [Xenopus
(Silurana) tropicalis]
gi|38174399|gb|AAH61312.1| general transcription factor 2F, polypeptide 2, 30kDa [Xenopus
(Silurana) tropicalis]
Length = 264
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 131/259 (50%), Gaps = 60/259 (23%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LDL A + G+WLVK+PKY+A +W K G E GKL+IV+N G K VS +L+E
Sbjct: 7 DLDLNGAKQNTGMWLVKLPKYLAQQWAKATGRGEVGKLRIVKNQG-KTEVSFTLNEELAS 65
Query: 85 VDPNEEK-------IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES-EKLMLEGKI 136
+ K P++H +Q V QTL VF+ + + D +KL LEG +
Sbjct: 66 IQDIGGKPASSLVTAPREHPFLLQSVGGQTLTVFTESLSGQSDDKSENRVIDKLALEGIV 125
Query: 137 VQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH--------- 186
V + ECRP A YM++K I ++S+P RQ + ++K + NY+PVSNH++
Sbjct: 126 VHRAECRPAASENYMQMKRKQIEESSKPKRQSQQIEKAVTTNYRPVSNHQYNIEYEKKKK 185
Query: 187 ---------------------------------------LTYLKEILKEVCNYNLKNPHK 207
++YLKEIL+++ YN+K HK
Sbjct: 186 DDGKRARADKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILRDIGIYNMKGTHK 245
Query: 208 NMWELKPEYRCYKEEEKKE 226
N WELKPEYR Y+ E+K +
Sbjct: 246 NTWELKPEYRHYQGEDKSD 264
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP+ L G++ +K N WE P
Sbjct: 201 MLFSAFEKHQYYNIKDLVDITKQPVSYLKEILRDIGIYNMKGTH--KNTWELKP 252
>gi|226372114|gb|ACO51682.1| Transcription initiation factor IIF subunit beta [Rana catesbeiana]
Length = 264
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 129/257 (50%), Gaps = 62/257 (24%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDL A + GVWLVK+PKY+A +W K G E GKL+I +N G K VS +L+E +
Sbjct: 8 LDLNGAKQNTGVWLVKLPKYLAQQWAKATGKGEVGKLRIAKNQG-KTEVSFTLNEELASI 66
Query: 86 D-------PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPE--SEKLMLEGKI 136
P+ P++H +Q V QTL VF+ + P+ ++KL +EG +
Sbjct: 67 QDIGGKPAPSFVTAPREHPFQLQSVGGQTLTVFTESLTG-QPEEKSENRTTDKLAIEGIV 125
Query: 137 VQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH--------- 186
VQ+ ECR A YM++K I ++S+P RQ + +++ V NYKPVSNH++
Sbjct: 126 VQRAECRAAASEHYMQMKRRQIEESSKPKRQSQQIERAVTINYKPVSNHQNNIEYERKKK 185
Query: 187 ---------------------------------------LTYLKEILKEVCNYNLKNPHK 207
+ YLKEILK++ YN+K HK
Sbjct: 186 DEGKRARADKQQVLDMLFSAFEKHQYYNLKDLVDITKQPVLYLKEILKDIGVYNVKGTHK 245
Query: 208 NMWELKPEYRCYKEEEK 224
N WEL+PEYR Y+ EEK
Sbjct: 246 NTWELRPEYRHYQGEEK 262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP++ L GV+ VK N WE P
Sbjct: 201 MLFSAFEKHQYYNLKDLVDITKQPVLYLKEILKDIGVYNVKGTH--KNTWELRP 252
>gi|349605491|gb|AEQ00709.1| General transcription factor IIF subunit 2-like protein, partial
[Equus caballus]
Length = 231
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 121/243 (49%), Gaps = 66/243 (27%)
Query: 38 WLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-----DPNEEKI 92
WLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E + P
Sbjct: 1 WLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANIHDIGGKPASVSA 59
Query: 93 PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMK 152
P++H +Q V QTL VF+ S+KL LEG +VQ+ ECRP A YM+
Sbjct: 60 PREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRAECRPAASENYMR 108
Query: 153 LKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------------------- 186
LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 109 LKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDM 168
Query: 187 -----------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEE 223
+ YLKEILKE+ N+K HKN WELKPEYR Y+ EE
Sbjct: 169 LFSAFEKHQYYNLKDLVDITKQPVLYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQGEE 228
Query: 224 KKE 226
K +
Sbjct: 229 KSD 231
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L L + + + + V N WE P
Sbjct: 168 MLFSAFEKHQYYNLKDLVDITKQPV--LYLKEILKEIGIQNVKGIHKNTWELKP 219
>gi|449662180|ref|XP_002160344.2| PREDICTED: general transcription factor IIF subunit 2-like [Hydra
magnipapillata]
Length = 265
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 129/251 (51%), Gaps = 51/251 (20%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
+D T+A + VWLVKVPKY+A+ W K + G LKI ++ K ++ LS+ +
Sbjct: 18 VDCTRAGQSVWLVKVPKYIADIWGKADASGIVGSLKIPKHTAPKHML-FELSDHLVKSQA 76
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYAD 147
+IP H+ ++ + QT GVFS + DA EK+ EGKI+++ +CRP D
Sbjct: 77 QGIEIPSKHKFEMSDI-WQTFGVFSE-TSCDDEDANEQAREKIAFEGKIIKRADCRPIED 134
Query: 148 SCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH----------------------- 184
YM++K +I KA +P+RQVK + +V +KPV++H
Sbjct: 135 PNYMQMKRKAIEKACRPVRQVKQITGLVTTFKPVNDHQINMEPIKKRKEEGKRVRAERDE 194
Query: 185 ----------KHLTY---------------LKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
KH Y LK IL++VCNYNLKNPHKN +ELKPEYR Y
Sbjct: 195 VLEVLFSAFEKHQFYTLKDLVGITQQPVVHLKAILRDVCNYNLKNPHKNTYELKPEYRHY 254
Query: 220 KEEEKKEEATA 230
K++E + E +
Sbjct: 255 KKDESETELAS 265
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 26/28 (92%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
+LF+AFEKHQ+Y +KDLV IT+QP+V+L
Sbjct: 198 VLFSAFEKHQFYTLKDLVGITQQPVVHL 225
>gi|260800648|ref|XP_002595210.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
gi|229280454|gb|EEN51222.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
Length = 249
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 116/248 (46%), Gaps = 64/248 (25%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQ-KPVVSLSLSEATMCVD 86
LD +S +WLVKVPKY++NKW V + E G LKI R PG KP V SL E D
Sbjct: 8 LDCKGSSNNLWLVKVPKYMSNKWMTVE-DGEVGTLKINRRPGAPKPEVIFSLKEDLAQRD 66
Query: 87 PNE--EKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRP 144
+ + P++H+ + Q +GVFS + L LEGK+ +++CRP
Sbjct: 67 DGKGNSEAPREHKFVLSGTAGQPMGVFSQ-----------TSTGALALEGKVAHRVDCRP 115
Query: 145 YADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH------------------- 184
YMKLK ++ A P+R LD+ + NYKPV+NH
Sbjct: 116 VGGEHYMKLKRLQVLDAMTPMRTTMALDRAVTNNYKPVANHANNLEIERRKKEDGKRARA 175
Query: 185 --------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWELKPE 215
KH + YLKE+LKE+ YNLK PHKN WELKPE
Sbjct: 176 DPEKVQEMLFSAFEKHQYYNIKDLVEITKQPIQYLKEVLKEIATYNLKAPHKNTWELKPE 235
Query: 216 YRCYKEEE 223
YR YK E
Sbjct: 236 YRHYKGGE 243
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV+ITKQPI L + +K P N WE P
Sbjct: 183 MLFSAFEKHQYYNIKDLVEITKQPIQYLKEVLKEIATYNLKAPH--KNTWELKP 234
>gi|449484507|ref|XP_004175135.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIF
subunit 2 [Taeniopygia guttata]
Length = 307
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 120/247 (48%), Gaps = 66/247 (26%)
Query: 34 SRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD-----PN 88
++ V + VPKY++ +W K G E GKL+IV+N G + VS +L+E + P
Sbjct: 73 TKAVQTIMVPKYLSQQWSKASGRGEVGKLRIVKNQG-RTEVSFTLNEELASISDIGGKPA 131
Query: 89 EEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADS 148
P++H +Q V QTL VF+ +KL LEG +VQ+ ECRP A
Sbjct: 132 SVSAPREHPFLLQSVGGQTLTVFTE-----------TSVDKLALEGIVVQRAECRPAASX 180
Query: 149 CYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH--------------------- 186
YMKLK I ++S+P+R + LDK + NYKPV+NH++
Sbjct: 181 NYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPVANHQYNIEYEKKKKEDGKRARADKQQ 240
Query: 187 ---------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+ YLKEIL+E+ YN+K HKN WELKPEYR Y
Sbjct: 241 VLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHKNTWELKPEYRHY 300
Query: 220 KEEEKKE 226
+ EEK +
Sbjct: 301 QGEEKSD 307
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 244 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 295
>gi|340370336|ref|XP_003383702.1| PREDICTED: general transcription factor IIF subunit 2-like
[Amphimedon queenslandica]
Length = 256
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 122/255 (47%), Gaps = 61/255 (23%)
Query: 22 KQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEA 81
K+ + +L+ + ASRGVWLVKVP YV+ +W+K + E G+++I RNP V L+
Sbjct: 11 KRDMRSLNTSNASRGVWLVKVPNYVSERWKKAKKDQELGRMRITRNPNNSTTVQFFLAPE 70
Query: 82 TMCV---DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQ 138
+ V D ++PKDHR+++Q Q+L VF+ L++EGKI Q
Sbjct: 71 LLEVKMEDGTVTQLPKDHRVNLQETKHQSLSVFTE----------SQSGGDLVIEGKISQ 120
Query: 139 KLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI-VQNYKPVSNH------------- 184
+ E +P S YM LK I +A + HL+++ +YKPV+ H
Sbjct: 121 RAEIQPVDSSIYMSLKKHQIQQAEKTKFTASHLNELPSHSYKPVAYHPEHEAIERKKKEP 180
Query: 185 -------------------KH---------------LTYLKEILKEVCNYNLKNPHKNMW 210
+H TYLKEILKEVC YN K+PHK MW
Sbjct: 181 KKARDDKNVVFDLLFSAFQRHQYYTFKDLVDITQQPATYLKEILKEVCIYNTKSPHKYMW 240
Query: 211 ELKPEYRCYKEEEKK 225
ELKPEY ++ K
Sbjct: 241 ELKPEYSLSQQSTSK 255
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
+LF+AF++HQYY KDLV IT+QP L
Sbjct: 193 LLFSAFQRHQYYTFKDLVDITQQPATYL 220
>gi|348515665|ref|XP_003445360.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Oreochromis niloticus]
Length = 271
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 120/254 (47%), Gaps = 60/254 (23%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
V+L + S+GVWLVKVPKY++ +W+K + GK+ I + G K V SL + +
Sbjct: 7 VDLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGDVGKITIGKKQG-KTEVCFSLIDELTAL 65
Query: 86 DPNEE-----KIPKDHRLDVQIVNRQTLGVFSH-----YIPPVNPDAIVPESEKLMLEGK 135
D E ++PKDH + V QT+ VFSH P +P +++ LEG
Sbjct: 66 DAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTGQSKPTTSPAETGSGRDEISLEGM 125
Query: 136 IVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQN-YKPVSNH---------- 184
+V + ECRP YMKLK I ++ +P R + L++ V +KPV+NH
Sbjct: 126 VVHRAECRPVVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPVANHDFNVEYEKKK 185
Query: 185 -----------------------KH---------------LTYLKEILKEVCNYNLKNPH 206
KH +TYLKEI++E+ YN K H
Sbjct: 186 KTEGKMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYLKEIMREIGTYNSKGAH 245
Query: 207 KNMWELKPEYRCYK 220
K+ WELKPEYR Y+
Sbjct: 246 KSTWELKPEYRHYQ 259
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF+AFEKHQYYNIK LV ITKQP+ L
Sbjct: 202 MLFSAFEKHQYYNIKALVDITKQPVTYL 229
>gi|198423704|ref|XP_002119394.1| PREDICTED: similar to RAP30 [Ciona intestinalis]
Length = 252
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 124/257 (48%), Gaps = 63/257 (24%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
LDL+ A VWLVKVPKY+A +W P + GKL+I +N G + V+ S+ + +
Sbjct: 8 TLDLSGAKHDVWLVKVPKYLATQWLNAPDGMSVGKLRITKNAG-RAEVTYSMDKNLTQAN 66
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
+E+ + DH+ +Q Q+L VFS EK +EG++VQK++CRP
Sbjct: 67 SSEKFLATDHKFVLQGTCGQSLAVFS-----------TTTGEKRAMEGRVVQKVDCRPIV 115
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQN-YKPVSN---------------------- 183
YM+LK +I+AS+P R K L + V+ YKPV+
Sbjct: 116 SHNYMQLKRAQMIEASKPQRTTKQLAEAVKTVYKPVTKIKEQIEYDAMKKEKGKKMRVDK 175
Query: 184 -----------HKHLTY---------------LKEILKEVCNYNLKNPHKNMWELKPEYR 217
KH Y LKE+L+E+ YN H++MWELKPEYR
Sbjct: 176 DVLQSILFNAFEKHQYYNIKDLQNITQQPVPFLKEVLREIGMYNKHPGHRHMWELKPEYR 235
Query: 218 CYKEEEKKEEATADDDD 234
K EEKKE+ +DD D
Sbjct: 236 HDKVEEKKED--SDDID 250
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
+LF AFEKHQYYNIKDL IT+QP+
Sbjct: 181 ILFNAFEKHQYYNIKDLQNITQQPV 205
>gi|440905270|gb|ELR55673.1| General transcription factor IIF subunit 2, partial [Bos grunniens
mutus]
Length = 227
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 119/239 (49%), Gaps = 66/239 (27%)
Query: 42 VPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-----DPNEEKIPKDH 96
VPKY++ +W K PG E GKL+I +N G + VS +L+E + P P++H
Sbjct: 1 VPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANIHDIGGKPASVSAPREH 59
Query: 97 RLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLD 156
+Q V QTL VF+ S+KL LEG +VQ+ ECRP A+ YM+LK
Sbjct: 60 PFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRAECRPAANENYMRLKRL 108
Query: 157 SIIKASQPLRQVKHLDKIV-QNYKPVSNHKH----------------------------- 186
I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 109 QIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSA 168
Query: 187 -------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
++YLK+ILKE+ N+K HKN WELKPEYR Y+ EEK +
Sbjct: 169 FEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYRHYQVEEKSD 227
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 164 MLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVK--GIHKNTWELKP 215
>gi|358423064|ref|XP_003585581.1| PREDICTED: general transcription factor IIF subunit 2-like [Bos
taurus]
Length = 257
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 122/255 (47%), Gaps = 66/255 (25%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+NL+ + ++ +WLVKVPKY++ +W + PG+ E GKLKI N G K +S +L++ V
Sbjct: 15 LNLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGEVGKLKIATNQG-KSEISFTLNKELTDV 73
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P +H+ +Q Q L V + + P ++ L+G +V +
Sbjct: 74 RGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEP-----------DQFSLQGTVVHRG 122
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP YM+LK I AS+P R V+ L+K+V NYKPV+NH++
Sbjct: 123 ECRPAPSENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPVANHQYNIEYEKRKKETGK 182
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL E+ N+K PHKN WE
Sbjct: 183 RVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTWE 242
Query: 212 LKPEYRCYKEEEKKE 226
LK EYRCY+ K+E
Sbjct: 243 LKEEYRCYQRAAKRE 257
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWE 51
+LFAAFEKHQYYNIKDLV IT QP+V L GV VK P N WE
Sbjct: 194 LLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPH--KNTWE 242
>gi|154152057|ref|NP_001093809.1| uncharacterized protein LOC511494 [Bos taurus]
gi|151554352|gb|AAI49620.1| LOC511494 protein [Bos taurus]
Length = 257
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 122/255 (47%), Gaps = 66/255 (25%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+NL+ + ++ +WLVKVPKY++ +W + PG+ E GKLKI N G K +S +L++ +
Sbjct: 15 LNLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGEVGKLKIATNQG-KSEISFTLNKELTDI 73
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P +H+ +Q Q L V + + P ++ L+G +V +
Sbjct: 74 RGTDGQPASVHAPMEHQFLLQTDRGQVLTVLTEHEP-----------DQFSLQGTVVHRG 122
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP YM+LK I AS+P R V+ L+K+V NYKPV+NH++
Sbjct: 123 ECRPAPSENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPVANHQYNIEYEKRKKETGK 182
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL E+ N+K PHKN WE
Sbjct: 183 RVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTWE 242
Query: 212 LKPEYRCYKEEEKKE 226
LK EYRCY+ K+E
Sbjct: 243 LKEEYRCYQRAAKRE 257
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWE 51
+LFAAFEKHQYYNIKDLV IT QP+V L GV VK P N WE
Sbjct: 194 LLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPH--KNTWE 242
>gi|296488873|tpg|DAA30986.1| TPA: hypothetical protein LOC511494 [Bos taurus]
gi|440898074|gb|ELR49646.1| hypothetical protein M91_07858 [Bos grunniens mutus]
Length = 257
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 122/255 (47%), Gaps = 66/255 (25%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+NL+ + ++ +WLVKVPKY++ +W + PG+ E GKLKI N G K +S +L++ +
Sbjct: 15 LNLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGEVGKLKIATNQG-KSEISFTLNKELTDI 73
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P +H+ +Q Q L V + + P ++ L+G +V +
Sbjct: 74 RGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEP-----------DQFSLQGTVVHRG 122
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP YM+LK I AS+P R V+ L+K+V NYKPV+NH++
Sbjct: 123 ECRPAPSENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPVANHQYNIEYEKRKKETGK 182
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL E+ N+K PHKN WE
Sbjct: 183 RVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTWE 242
Query: 212 LKPEYRCYKEEEKKE 226
LK EYRCY+ K+E
Sbjct: 243 LKEEYRCYQRAAKRE 257
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWE 51
+LFAAFEKHQYYNIKDLV IT QP+V L GV VK P N WE
Sbjct: 194 LLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPH--KNTWE 242
>gi|348515663|ref|XP_003445359.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Oreochromis niloticus]
Length = 255
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 66/249 (26%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
V+L + S+GVWLVKVPKY++ +W+K + GK+ I + G K V SL + +
Sbjct: 7 VDLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGDVGKITIGKKQG-KTEVCFSLIDELTAL 65
Query: 86 DPNEE-----KIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
D E ++PKDH + V QT+ VFSH +++++ LEG +V +
Sbjct: 66 DAVGENDASLQVPKDHPFTMHTVGGQTMAVFSH-----------SDTDEISLEGMVVHRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQN-YKPVSNH--------------- 184
ECRP YMKLK I ++ +P R + L++ V +KPV+NH
Sbjct: 115 ECRPVVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPVANHDFNVEYEKKKKTEGK 174
Query: 185 ------------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWE 211
KH +TYLKEI++E+ YN K HK+ WE
Sbjct: 175 MVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYLKEIMREIGTYNSKGAHKSTWE 234
Query: 212 LKPEYRCYK 220
LKPEYR Y+
Sbjct: 235 LKPEYRHYQ 243
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF+AFEKHQYYNIK LV ITKQP+ L
Sbjct: 186 MLFSAFEKHQYYNIKALVDITKQPVTYL 213
>gi|389612050|dbj|BAM19555.1| transcription factor TFIIFbeta [Papilio xuthus]
Length = 154
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 87/154 (56%), Gaps = 51/154 (33%)
Query: 132 LEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH----- 186
+EG+IVQKLECRPYAD+ KLK +SI KAS P RQV+ LD+IVQN+KPVS+HKH
Sbjct: 1 MEGRIVQKLECRPYADNTXYKLKSESIRKASMPQRQVQQLDRIVQNFKPVSDHKHNIDFL 60
Query: 187 -------------------------------------------LTYLKEILKEVCNYNLK 203
+ YLK+ILKEVCNYNLK
Sbjct: 61 EKKKAEGKKARDDKDVVLNMLFAAFEKHQYYNIKDLQKITKQPIVYLKDILKEVCNYNLK 120
Query: 204 NPHKNMWELKPEYRCYKEE---EKKEEATADDDD 234
NPHKNMWELKPEYR YK+E E K + + D D
Sbjct: 121 NPHKNMWELKPEYRHYKQEVPVEPKPDKNSSDSD 154
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 38/61 (62%), Gaps = 11/61 (18%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIV----------NLDLTQASRGVWLVKVPKYVANKW 50
MLFAAFEKHQYYNIKDL KITKQPIV N +L + +W +K P+Y K
Sbjct: 80 MLFAAFEKHQYYNIKDLQKITKQPIVYLKDILKEVCNYNLKNPHKNMWELK-PEYRHYKQ 138
Query: 51 E 51
E
Sbjct: 139 E 139
>gi|426215262|ref|XP_004001893.1| PREDICTED: general transcription factor IIF subunit 2-like [Ovis
aries]
Length = 257
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 121/255 (47%), Gaps = 66/255 (25%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+NL+ Q ++ +WLVKVPKY++ +W + G+ E GKLKI N G K +S +L++ +
Sbjct: 15 LNLEGIQQNQRMWLVKVPKYLSQQWSEASGSGEVGKLKIATNQG-KSEISFTLNKELTDI 73
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P +H+ +Q Q L V + + P ++ L+G +V +
Sbjct: 74 RGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHAP-----------DQFSLQGTVVHRG 122
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP YM+LK I AS+P R V+ L+K+V NYKPV+NH++
Sbjct: 123 ECRPAPSENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPVANHQYNIEYEKRKKETGK 182
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEIL E+ N+K PHKN WE
Sbjct: 183 RVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTWE 242
Query: 212 LKPEYRCYKEEEKKE 226
LK EYRCY+ K++
Sbjct: 243 LKEEYRCYQRAAKRQ 257
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWE 51
+LFAAFEKHQYYNIKDLV IT QP+V L GV VK P N WE
Sbjct: 194 LLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPH--KNTWE 242
>gi|1362632|pir||S55766 transcription initiation factor TFIIF small chain - fruit fly
(Drosophila melanogaster) (fragments)
Length = 165
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 104/206 (50%), Gaps = 82/206 (39%)
Query: 39 LVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDPNEEKIPKDHRL 98
LVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +DP E
Sbjct: 1 LVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALDPEE--------- 51
Query: 99 DVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSI 158
+EG+IVQKLECRP AD+CYMKLKL+SI
Sbjct: 52 --------------------------------YMEGRIVQKLECRPIADNCYMKLKLESI 79
Query: 159 IKASQPLRQVKHLDKIVQNYKPV--------------------------SNHKH------ 186
KAS+P R+V+ +DKIVQN+K + + KH
Sbjct: 80 RKASEPQRRVQPIDKIVQNFKNIEYRERKKAEGKKARDDKNAVMDMLFHAFEKHQYYNIK 139
Query: 187 ---------LTYLKEILKEVCNYNLK 203
++YLKEILK+VC+YN+K
Sbjct: 140 DLVKITNQPISYLKEILKDVCDYNMK 165
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 125 MLFHAFEKHQYYNIKDLVKITNQPISYL 152
>gi|351715101|gb|EHB18020.1| General transcription factor IIF subunit 2 [Heterocephalus glaber]
Length = 271
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 64/237 (27%)
Query: 42 VPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV-----DPNEEKIPKDH 96
VPKY++ +W K PG E GKL+I +N G + VS +L+E + P P++H
Sbjct: 43 VPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANIHDIGGKPASVSAPREH 101
Query: 97 RLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLD 156
+Q V QTL VF+ V ++L EG +VQ+ ECRP A YM+LK
Sbjct: 102 PFVLQSVGGQTLTVFTESSSVV---------QRLNAEGIVVQRAECRPAASENYMRLKRL 152
Query: 157 SIIKASQPLRQVKHLDKIV-QNYKPVSNHKH----------------------------- 186
I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 153 QIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSA 212
Query: 187 -------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEK 224
+ YLKEILKE+ N+K HKN WELKPEYR Y+ EEK
Sbjct: 213 FEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQGEEK 269
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 208 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 259
>gi|432931999|ref|XP_004081735.1| PREDICTED: general transcription factor IIF subunit 2-like [Oryzias
latipes]
Length = 253
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 125/257 (48%), Gaps = 69/257 (26%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
VNL + S+GVWLVKVPKY++ +W+K E GK+ I + G K V SLSE +
Sbjct: 7 VNLTGVRQSKGVWLVKVPKYLSQQWDKATEKGEVGKITIGKKQG-KTEVCFSLSEELAAL 65
Query: 86 DPNEEK-----IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
EEK +P+DH +Q V QT+ VFS +++ + LEG +V +
Sbjct: 66 GSAEEKDASVQVPRDHPFTMQTVGGQTMAVFSQ-----------SDTDGISLEGTVVHRA 114
Query: 141 ECRPYADSCYMKLK-LDSIIKASQPLRQVKHLDKIVQN-YKPVSNH-------------- 184
ECRP YMK+K L S ++ +P R + LD+ + +KPV+NH
Sbjct: 115 ECRPNVSEDYMKIKRLQS--ESVKPQRLSQQLDRAITTVFKPVANHDFNVEFEKKKKSEG 172
Query: 185 -------------------KH---------------LTYLKEILKEVCNYNLKNPHKNMW 210
KH +TYLKEI++E+ N K HK+ W
Sbjct: 173 KMVRAERQVVMDMLFSAFEKHQYYSFKDLVDITKQPVTYLKEIVREIGVCNRKGAHKSSW 232
Query: 211 ELKPEYRCYKEEEKKEE 227
ELKPEY+ Y+ ++++EE
Sbjct: 233 ELKPEYQHYRADDEEEE 249
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF+AFEKHQYY+ KDLV ITKQP+ L
Sbjct: 185 MLFSAFEKHQYYSFKDLVDITKQPVTYL 212
>gi|348515667|ref|XP_003445361.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
3 [Oreochromis niloticus]
Length = 259
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 62/249 (24%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
V+L + S+GVWLVKVPKY++ +W+K + GK+ I + G K V SL + +
Sbjct: 7 VDLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGDVGKITIGKKQG-KTEVCFSLIDELTAL 65
Query: 86 DPNEE-----KIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
D E ++PKDH + V QT+ VFSH D ++E + LEG +V +
Sbjct: 66 DAVGENDASLQVPKDHPFTMHTVGGQTMAVFSH------SDTESYKNE-ISLEGMVVHRA 118
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQN-YKPVSNH--------------- 184
ECRP YMKLK I ++ +P R + L++ V +KPV+NH
Sbjct: 119 ECRPVVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPVANHDFNVEYEKKKKTEGK 178
Query: 185 ------------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWE 211
KH +TYLKEI++E+ YN K HK+ WE
Sbjct: 179 MVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYLKEIMREIGTYNSKGAHKSTWE 238
Query: 212 LKPEYRCYK 220
LKPEYR Y+
Sbjct: 239 LKPEYRHYQ 247
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF+AFEKHQYYNIK LV ITKQP+ L
Sbjct: 190 MLFSAFEKHQYYNIKALVDITKQPVTYL 217
>gi|443721667|gb|ELU10906.1| hypothetical protein CAPTEDRAFT_544 [Capitella teleta]
Length = 211
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 101/208 (48%), Gaps = 48/208 (23%)
Query: 69 GQKPVVSLSLSEATMCV-DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES 127
G KP V SL V D + K+PKDH+ + + RQ+L V S P +
Sbjct: 3 GGKPEVIFSLDSRLAAVEDAEKNKVPKDHKFVLGSLGRQSLSVLSTVPSDKEPTDPSSSN 62
Query: 128 EKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH--- 184
E+L LEGK++Q+ EC+P ADS YM LK S ++ P RQV HLDK V NYKP S H
Sbjct: 63 EELSLEGKVIQRAECKPVADSNYMALKRSSFETSNNPARQVVHLDKAVLNYKPKSIHSAM 122
Query: 185 -----------------------------KH---------------LTYLKEILKEVCNY 200
KH + +LKEIL+E+ NY
Sbjct: 123 VEMDNKPKDQKRMRMDKDRVMEMLFSAFEKHQYYNLKDLVKITDQPVVFLKEILREIGNY 182
Query: 201 NLKNPHKNMWELKPEYRCYKEEEKKEEA 228
N+K PHKNMWELK E+R YK+++ A
Sbjct: 183 NMKAPHKNMWELKSEFRHYKDDKPSTSA 210
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWE 51
MLF+AFEKHQYYN+KDLVKIT QP+V L G + +K P N WE
Sbjct: 145 MLFSAFEKHQYYNLKDLVKITDQPVVFLKEILREIGNYNMKAPH--KNMWE 193
>gi|410897211|ref|XP_003962092.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 252
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 119/258 (46%), Gaps = 62/258 (24%)
Query: 20 ITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLS 79
+T + +NL + ++ VWLVKVP+Y++ +WE+ E G + I + G KP VS LS
Sbjct: 1 MTDKTELNLTGAKENKCVWLVKVPRYLSQQWERASDKGEVGTISIAKKQG-KPEVSFRLS 59
Query: 80 EATMCVDPNEEK-----IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEG 134
E + EK +P+DH + V QTL +S + DA L LEG
Sbjct: 60 EDLTSLGAAGEKDASPQVPRDHPFGMHAVGGQTLLTYSQSSTENSSDA-------LSLEG 112
Query: 135 KIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQN-YKPVSNH--------- 184
+V + EC P + YMKLK I + ++ R + L++ + +KPV+NH
Sbjct: 113 TVVHRAECTPVVNDNYMKLKKMQIKECTKCPRLSQQLERAITTVFKPVANHDFNIVYEKK 172
Query: 185 ------------------------KH---------------LTYLKEILKEVCNYNLKNP 205
KH +TYLKEILKE+ YN K P
Sbjct: 173 KKSEGKMVRAERQVVLDMLFSAFEKHQYYNIKELVDITKQPVTYLKEILKEIGTYNNKGP 232
Query: 206 HKNMWELKPEYRCYKEEE 223
HK+ WELKPEYR Y+ E
Sbjct: 233 HKSTWELKPEYRHYQTAE 250
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIK+LV ITKQP+ L G + K P + WE P
Sbjct: 190 MLFSAFEKHQYYNIKELVDITKQPVTYLKEILKEIGTYNNKGPH--KSTWELKP 241
>gi|349805557|gb|AEQ18251.1| putative general transcription factor polypeptide subunit
[Hymenochirus curtipes]
Length = 165
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 8/165 (4%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
LDL A + G+WLVK+PKY+A +W K G E GKL+IV+N G K VS +L+E
Sbjct: 2 GLDLNGAKQNTGMWLVKLPKYLAQQWSKANGRGEVGKLRIVKNQG-KTEVSFTLNEELAS 60
Query: 85 VDPNEEK---IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPE-SEKLMLEGKIVQKL 140
+ + K P++H +Q V QTL VF+ + + D +EKL LEG +V +
Sbjct: 61 IHDIKGKPTSTPREHPFQLQSVGGQTLTVFTETLSGQSEDKSENRITEKLALEGIVVHRA 120
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNH 184
ECRP A+ YM++K I ++S+P RQ + ++K + NYKPVSNH
Sbjct: 121 ECRPAANENYMQMKRKQIEESSKPKRQSQQIEKAVTTNYKPVSNH 165
>gi|226503|prf||1515353A transcription initiation factor RAP30
Length = 234
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 20/167 (11%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF+AFEKHQYYN+KDLV ITKQP+V L
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>gi|343959718|dbj|BAK63716.1| transcription initiation factor IIF subunit beta [Pan troglodytes]
Length = 181
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 20/167 (11%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G+ VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTE-VSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
>gi|345325134|ref|XP_001514508.2| PREDICTED: general transcription factor IIF subunit 2-like
[Ornithorhynchus anatinus]
Length = 309
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 13/171 (7%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LDLT A + GVWLVKVPKY++ +W K G E GKL+I ++ G K VS +L+E
Sbjct: 105 DLDLTGAKQNTGVWLVKVPKYLSQQWAKASGKGEVGKLRIAKSQG-KTEVSFTLNEELAS 163
Query: 85 V-----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPE---SEKLMLEGKI 136
+ P + P++H +Q V QTL VF+ P + E ++KL LEG +
Sbjct: 164 IHDIGGKPASVRAPREHPFLLQSVGGQTLTVFTE-TPADSQSEDHSENRSTDKLALEGIV 222
Query: 137 VQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH 186
VQ+ ECRP A YMKLK I ++S+P+R + LDK V NYKPV+NH++
Sbjct: 223 VQRAECRPAASENYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPVANHQY 273
>gi|119629132|gb|EAX08727.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_b [Homo sapiens]
Length = 181
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 20/167 (11%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G+ VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTE-VSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
>gi|25151550|ref|NP_741661.1| Protein Y39B6A.36 [Caenorhabditis elegans]
gi|21038853|emb|CAD31828.1| Protein Y39B6A.36 [Caenorhabditis elegans]
Length = 263
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 123/259 (47%), Gaps = 64/259 (24%)
Query: 21 TKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKI-----------VRNPG 69
TK+ ++D A R +WLVKVP+Y++ W+ GN+ GKL+I + +P
Sbjct: 4 TKRYSNDVDCELAKRSIWLVKVPRYLSELWDANEGNV-VGKLQIGAQVELHTAKGLIHPK 62
Query: 70 QKPVVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEK 129
K S S T P +IP ++ + V QT+ V S + DA + ++ K
Sbjct: 63 PKEPTEGSSSTVT---QPEASEIPTEYSFILHDVKSQTMSVLSEDKQGLGADAPI-KTGK 118
Query: 130 LMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH----- 184
L +EG+I++K ECRP A S YMK+KL I+K +QP + VK ++K +KPVS H
Sbjct: 119 LAIEGRIIKKAECRPPATSKYMKMKLAHIVKNTQPKKTVKMIEKAAVKFKPVSVHAEDMI 178
Query: 185 ----------------------------KH---------------LTYLKEILKEVCNYN 201
KH ++Y+KE+L+E+ YN
Sbjct: 179 KSKQKKDGAKTYRADRDVLRGALFKAFEKHSFYRLQDLQQLLQQPVSYVKEVLQEIAVYN 238
Query: 202 LKNPHKNMWELKPEYRCYK 220
PHK++W LKPEY YK
Sbjct: 239 TAPPHKSLWCLKPEYCNYK 257
>gi|341895421|gb|EGT51356.1| hypothetical protein CAEBREN_08139 [Caenorhabditis brenneri]
Length = 266
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 120/254 (47%), Gaps = 62/254 (24%)
Query: 33 ASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVR----------NPGQKPVVSLSLSEAT 82
A RG+WLVKVP+Y++ W+ G + GKL+I NP KP + +T
Sbjct: 16 AKRGIWLVKVPRYLSELWDANEGGV-VGKLQIGAQVEFHSAKGLNP-PKPKDDGEGTSST 73
Query: 83 MCVDPNE-EKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLE 141
P+E +IP + + V QT+ + S + +A V ++ KL +EG+I++K E
Sbjct: 74 TAPMPSEASEIPTQYSFILNDVRGQTMSLLSEDKTGLGSEAAV-KTGKLAIEGRIIKKAE 132
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH----------------- 184
CRP A S YMK+KL I+K +QP + VK +DK +KPVS H
Sbjct: 133 CRPPATSKYMKMKLAHIVKNTQPKKTVKMIDKAAVKFKPVSVHAEDMIRSKAKKDGAKTY 192
Query: 185 ----------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
KH ++Y+KE+L+E+ YN PHK++W LK
Sbjct: 193 RADRDVLRQSLFKAFEKHSYYRLQDLQQLLQQPVSYVKEVLQEIAVYNTAPPHKSLWCLK 252
Query: 214 PEYRCYKEEEKKEE 227
PEY YK E+
Sbjct: 253 PEYCNYKVNASSEQ 266
>gi|402588061|gb|EJW81995.1| hypothetical protein WUBG_07095 [Wuchereria bancrofti]
Length = 271
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 63/262 (24%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV-----RNPGQKPVVSLSLSEA 81
++D A RGVWLVKVP+Y++ WEK G + G+L + + + SLS S
Sbjct: 12 HVDTDCAKRGVWLVKVPRYLSEIWEKNVG-YDVGRLIYLGYDNEESSSDSFLNSLSGSNP 70
Query: 82 TMC----VDPNEEK-----IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLML 132
+ + P + K IP +H + + Q+L V +N DA + S +L +
Sbjct: 71 STSRNNRIGPTKSKQTSFTIPNEHSFVIGDIRNQSLAVLCEDKSGLNEDADIC-SGRLSI 129
Query: 133 EGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKHL----- 187
EG++V++ +CRP YM++K+ I K+SQP R VK ++K +KP++ H +
Sbjct: 130 EGRVVKRADCRPPQTDDYMRMKIKQIEKSSQPKRHVKQMEKAEVKFKPIAVHAEMLERSR 189
Query: 188 ------------------------------------------TYLKEILKEVCNYNLKNP 205
++KEIL E+ YN P
Sbjct: 190 RKKEQKTVRADKDVVRQAIFHAFEKHQYYRLVDLQKLTSQPPGFVKEILTEIAVYNTMPP 249
Query: 206 HKNMWELKPEYRCYKEEEKKEE 227
HK+MWELKPEYR Y++++K+ E
Sbjct: 250 HKSMWELKPEYRNYRKDKKESE 271
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQP 24
+F AFEKHQYY + DL K+T QP
Sbjct: 208 IFHAFEKHQYYRLVDLQKLTSQP 230
>gi|156370365|ref|XP_001628441.1| predicted protein [Nematostella vectensis]
gi|156215417|gb|EDO36378.1| predicted protein [Nematostella vectensis]
Length = 249
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 116/256 (45%), Gaps = 61/256 (23%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKW-EKVPGNIEAGKLKIVRNP-GQKPVVSLSLSEATM 83
+ LD A R VWLVKVPKY++N W EK + G LKI ++ G+K + +
Sbjct: 3 MELDCNGAGRDVWLVKVPKYLSNLWMEKADPSGIVGTLKINKDQVGKKEKIVFFFASFRE 62
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
++ +P D + I F +Y SEKL +EG++VQ+ +CR
Sbjct: 63 LEILKKKILPGDKECGLSIALFYGSNKFFNYYYT---------SEKLAVEGRVVQRADCR 113
Query: 144 PYADSC-YMKLKLDSIIKASQPLRQVKHLDKIVQN-YKPVSNHKH--------------- 186
P S Y K SI AS+P RQ + L KIV N YKPVS+HK
Sbjct: 114 PLNPSNDYFLHKRKSIQVASKPARQAQQLKKIVTNAYKPVSDHKMNIEYKKKKKDEGKRA 173
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
+ YLK ILKE+ YN KNPHKNMWELK
Sbjct: 174 RATEEDVKASLFSAFEQHQYYNLKDLVHKTQQPIVYLKSILKEIAQYNTKNPHKNMWELK 233
Query: 214 PEYRCYKEEEKKEEAT 229
PEYR Y + + ++++
Sbjct: 234 PEYRHYGKNTEDKDSS 249
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGK 61
LF+AFE+HQYYN+KDLV T+QPIV L + K P N WE P GK
Sbjct: 184 LFSAFEQHQYYNLKDLVHKTQQPIVYLKSILKEIAQYNTKNPH--KNMWELKPEYRHYGK 241
>gi|195380583|ref|XP_002049050.1| GJ21374 [Drosophila virilis]
gi|194143847|gb|EDW60243.1| GJ21374 [Drosophila virilis]
Length = 247
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 63/246 (25%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQK--PVVSLSLSEATMCV 85
+D+++ASRG+WLVKVP YVA WE+ P +++ +++ ++ K V L LS+ M +
Sbjct: 11 MDMSKASRGIWLVKVPNYVAQMWEQAPNDMQVATMRMEKSGDDKEPAKVKLILSQDLMQL 70
Query: 86 DPNEEKIPKDHRLDV--QIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
P+ + + +H L + I + G+FS V +++ +M EG + K+EC
Sbjct: 71 APD-KLLASEHDLKLCKAIKGARLTGIFS----------TVDDTDSVM-EGWVTHKMECL 118
Query: 144 PYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH----------------- 186
P ++ Y+K+K S I+ +P+R + L+ IV++YKPVSNH H
Sbjct: 119 PICNAQYLKMKQQS-IRGVRPMRSAEALNHIVKSYKPVSNHAHNKDDGKRRKDATKVLSK 177
Query: 187 -----------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+ LK ILK++ +Y+ H+ MWELK EYR
Sbjct: 178 ENIMDMLFQAFEKHQYYTLKDLQFITKQSVFVLKAILKDIGDYSKDPAHRQMWELKEEYR 237
Query: 218 CYKEEE 223
Y++ E
Sbjct: 238 HYQKPE 243
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYY +KDL ITKQ + L
Sbjct: 183 MLFQAFEKHQYYTLKDLQFITKQSVFVL 210
>gi|327283876|ref|XP_003226666.1| PREDICTED: general transcription factor IIF subunit 2-like [Anolis
carolinensis]
Length = 228
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 114/255 (44%), Gaps = 89/255 (34%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + G+WLVKV RN G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGMWLVKVSG---------------------RNQG-RTEVSFTLNEDLANI 44
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
D P P++H +Q V QTL VF+ A+ EKL LEG +VQ+
Sbjct: 45 DDIGGKPTSISAPREHPFLLQSVGGQTLTVFTE-------SAL----EKLSLEGIVVQRA 93
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+ L+K + NYKPV+NH++
Sbjct: 94 ECRPAASENYMKLKRLQIEESSKPVSWTMQLEKAVTTNYKPVANHQYNIEYEKKKKEDGK 153
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
++YLKEIL+E+ YN+K HKN WE
Sbjct: 154 RARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILREIGIYNVKGTHKNTWE 213
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ E+K +
Sbjct: 214 LKPEYRHYQGEDKSD 228
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP+ L G++ VK N WE P
Sbjct: 165 MLFSAFEKHQYYNIKDLVDITKQPVSYLKEILREIGIYNVKGTH--KNTWELKP 216
>gi|308471818|ref|XP_003098139.1| hypothetical protein CRE_11367 [Caenorhabditis remanei]
gi|308269480|gb|EFP13433.1| hypothetical protein CRE_11367 [Caenorhabditis remanei]
Length = 268
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 121/265 (45%), Gaps = 72/265 (27%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
++D A R +WLVKVP+Y++ WE G++ GKL+I V ++ +
Sbjct: 12 DVDCELAKRSIWLVKVPRYLSELWEANEGHV-VGKLQIGAQ------VEFLTAKGLIQPT 64
Query: 87 PNEE----------------KIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKL 130
P +E +IP + + V QT+ V S + +A V ++ +L
Sbjct: 65 PKDEGEGTSAAASATNAEASEIPTQYSFILHDVKSQTMSVLSEDKQALGSEATV-KTGRL 123
Query: 131 MLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH------ 184
+EG+I++K ECRP A S YMK+KL I+K +QP + VK +DK +KPVS H
Sbjct: 124 AIEGRIIKKAECRPPATSKYMKMKLAHIVKNTQPKKTVKMIDKAAVKFKPVSVHAEDMIK 183
Query: 185 ---------------------------KH---------------LTYLKEILKEVCNYNL 202
KH ++Y+KE+L+E+ YN
Sbjct: 184 SKQKKDGAKTYRADRDVLRQALFKAFEKHSFYRLQDLQQLLQQPVSYVKEVLQEIAVYNT 243
Query: 203 KNPHKNMWELKPEYRCYKEEEKKEE 227
PHK++W LKPEY YK + E+
Sbjct: 244 APPHKSLWCLKPEYCNYKVNAQSEQ 268
>gi|393912406|gb|EFO26064.2| hypothetical protein LOAG_02427 [Loa loa]
Length = 294
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 126/286 (44%), Gaps = 88/286 (30%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLS------- 79
++D A RGVWLVKVP+Y++ WEK G+ + G+L I G+ +V S +
Sbjct: 12 HVDSDCAKRGVWLVKVPRYLSEMWEKNVGH-DVGRLVIKAANGKTDLVFKSNTTLLEKNP 70
Query: 80 -----EATM-------------------------CVDPNEEKIPKDHRLDVQIVNRQTLG 109
EA+ C + N +P +H + + Q+L
Sbjct: 71 SGHDKEASSSNSFLSSLSGNSLSASRSNRIGFAKCKEANFT-MPNEHSFVIGDIRNQSLA 129
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V +N DA + S +L +EG++V++ +CRP + YM++K+ I K+SQP R VK
Sbjct: 130 VLCEDKSGLNEDADIC-SGRLSIEGRVVKRADCRPPQTADYMRMKIKQIEKSSQPKRHVK 188
Query: 170 HLDKIVQNYKPVSNHKHL------------------------------------------ 187
++K +KP++ H +
Sbjct: 189 QMEKAEVKFKPIAVHAEMQAREKQKKEGAKTVRADKDVVRQAIFHAFEKHQYYRLVDLQK 248
Query: 188 ------TYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEE 227
++KEIL E+ YN PHK+MWELKPEYR Y++++K+ E
Sbjct: 249 LTSQPPGFVKEILTEIAVYNTMPPHKSMWELKPEYRSYRKDKKETE 294
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQP 24
+F AFEKHQYY + DL K+T QP
Sbjct: 231 IFHAFEKHQYYRLVDLQKLTSQP 253
>gi|324518109|gb|ADY47006.1| General transcription factor IIF subunit 2 [Ascaris suum]
Length = 297
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 124/289 (42%), Gaps = 90/289 (31%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSL--------S 79
+D A RGVWLVKVP+Y+++ WEK G+ + G L I G+ ++ S S
Sbjct: 16 VDCEMARRGVWLVKVPRYLSDVWEKHAGH-DVGTLIIKPANGKTDIIFKSTPGLCGPSES 74
Query: 80 EAT------------------------MCVD---PNEEKIPKDHRLDVQIVNRQTLGVFS 112
E+T + V P +IP ++ + V Q+L V S
Sbjct: 75 ESTSPEASSSMSQPSSSGLPHVRSNPILPVGRKKPTGSEIPGEYTFVIADVKSQSLNVLS 134
Query: 113 HYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLD 172
+N DA + S +L EG+++++ +CRP Y+ +K++ I K+S P RQ+K +D
Sbjct: 135 EDKTGLNEDAEIC-SGRLAFEGRVIKRADCRPPQTVDYLHMKINQIEKSSIPKRQLKQID 193
Query: 173 KIVQNYKPVSNH---------------------------------KHLTY---------- 189
K +KPV+ H KH Y
Sbjct: 194 KAEVKFKPVAIHTETLARERQKKEGAKTVRGDKDVVRQAIFHAFEKHQYYRLIDLQKLTN 253
Query: 190 -----LKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATADDD 233
+KEIL E+ YN PHK+MWELKPEYR Y +K DDD
Sbjct: 254 QPPGFVKEILTEIAMYNTTPPHKSMWELKPEYRNYGNVKK-----TDDD 297
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQP 24
+F AFEKHQYY + DL K+T QP
Sbjct: 233 IFHAFEKHQYYRLIDLQKLTNQP 255
>gi|355693889|gb|AER99486.1| proteinral transcription factor IIF, polypeptide 2, 30kDa [Mustela
putorius furo]
Length = 201
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 93/203 (45%), Gaps = 65/203 (32%)
Query: 74 VSLSLSEATMCVD-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESE 128
VS +L+E + P P++H +Q V QTL VF+ S+
Sbjct: 10 VSFTLNEDLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTE-----------SSSD 58
Query: 129 KLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH- 186
KL LEG +VQ+ ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 59 KLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYN 118
Query: 187 -----------------------------------------------LTYLKEILKEVCN 199
+ YLKEILKE+
Sbjct: 119 IEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGV 178
Query: 200 YNLKNPHKNMWELKPEYRCYKEE 222
N+K HKN WELKPEYR Y+ E
Sbjct: 179 QNVKGTHKNTWELKPEYRHYQGE 201
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 142 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGTH--KNTWELKP 193
>gi|432112402|gb|ELK35197.1| General transcription factor IIF subunit 2 [Myotis davidii]
Length = 273
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 19/134 (14%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G+ VS +L+E +
Sbjct: 134 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQGRT-EVSFTLNEDLANI 192
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 193 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTES-----------SSDKLSLEGIVVQRA 241
Query: 141 ECRPYADSCYMKLK 154
ECRP A YM+LK
Sbjct: 242 ECRPAASENYMRLK 255
>gi|256070160|ref|XP_002571412.1| transcription initiation factor iif (tfiif) beta subunit-related
[Schistosoma mansoni]
Length = 335
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 122/315 (38%), Gaps = 112/315 (35%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV----------RNPGQKPVVSLS 77
+D ++A GVWLVKVPKY+A W + GK+ I + PG + V ++
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGSDGVVGKVVIASSTSASQNGNKGPGSQ-VTLVT 80
Query: 78 LSEATMCVDPNEEKIPKDHRLDVQI---------------------VNRQTLGVFSHYI- 115
SE V + IPK+H+ +Q V R+T + +
Sbjct: 81 DSELLNQVGESGNLIPKEHQFLIQTSASSNSTPGTVRPGQTTPSSTVQRRTGAISGQELI 140
Query: 116 ----------------------------PPVNPDAIVPE---SEKLMLEGKIVQKLECRP 144
P +P + P S +L L G++ + ECRP
Sbjct: 141 ILCEDDLGCAQTNSFPSSTSNTTLTSSAAPPSPFSNKPYARYSRRLSLFGRVNSRAECRP 200
Query: 145 YADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH-------------------- 184
++ YM LK + ++P +V L + V+NYKPVSNH
Sbjct: 201 PPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVSNHVNNIEYENRKKVEGKNLRRE 260
Query: 185 -------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWELKPEY 216
+H L YL EILKE+ +N PHKNMWELKPEY
Sbjct: 261 KEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEY 320
Query: 217 RCYKEEEKKEEATAD 231
R Y + E K E+ +
Sbjct: 321 RHYTQSENKTESNTE 335
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 268 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 318
>gi|350645052|emb|CCD60234.1| transcription initiation factor iif (tfiif),beta subunit-related
[Schistosoma mansoni]
Length = 335
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 122/315 (38%), Gaps = 112/315 (35%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV----------RNPGQKPVVSLS 77
+D ++A GVWLVKVPKY+A W + GK+ I + PG + V ++
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGSDGVVGKVVIASSTSASQNGNKGPGSQ-VTLVT 80
Query: 78 LSEATMCVDPNEEKIPKDHRLDVQI---------------------VNRQTLGVFSHYI- 115
SE V + IPK+H+ +Q V R+T + +
Sbjct: 81 DSELLNQVGESGNLIPKEHQFLIQTSASSNSTPGTVRPGQTTPSSTVQRRTGAISGQELI 140
Query: 116 ----------------------------PPVNPDAIVPE---SEKLMLEGKIVQKLECRP 144
P +P + P S +L L G++ + ECRP
Sbjct: 141 ILCEDDLGCAQTNSFPSSTSNTTLTSSAAPPSPFSNKPYARYSRRLSLFGRVNSRAECRP 200
Query: 145 YADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH-------------------- 184
++ YM LK + ++P +V L + V+NYKPVSNH
Sbjct: 201 PPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVSNHVNNIEYENRKKVEGKNLRRE 260
Query: 185 -------------KH---------------LTYLKEILKEVCNYNLKNPHKNMWELKPEY 216
+H L YL EILKE+ +N PHKNMWELKPEY
Sbjct: 261 KEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEY 320
Query: 217 RCYKEEEKKEEATAD 231
R Y + E K E+ +
Sbjct: 321 RHYTQPENKTESNTE 335
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 268 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 318
>gi|312070149|ref|XP_003138013.1| hypothetical protein LOAG_02427 [Loa loa]
Length = 279
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 63/260 (24%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLS------- 79
++D A RGVWLVKVP+Y++ WEK G+ + G+L I G+ +V S +
Sbjct: 24 HVDSDCAKRGVWLVKVPRYLSEMWEKNVGH-DVGRLVIKAANGKTDLVFKSNTTLLEKNP 82
Query: 80 -----EATM-------------------------CVDPNEEKIPKDHRLDVQIVNRQTLG 109
EA+ C + N +P +H + + Q+L
Sbjct: 83 SGHDKEASSSNSFLSSLSGNSLSASRSNRIGFAKCKEANF-TMPNEHSFVIGDIRNQSLA 141
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V +N DA + S +L +EG++V++ +CRP + YM++K+ I++ +Q K
Sbjct: 142 VLCEDKSGLNEDADIC-SGRLSIEGRVVKRADCRPPQTADYMRMKM-YILQIQAREKQKK 199
Query: 170 HLDKIVQNYKPV-------SNHKHLTY---------------LKEILKEVCNYNLKNPHK 207
K V+ K V + KH Y +KEIL E+ YN PHK
Sbjct: 200 EGAKTVRADKDVVRQAIFHAFEKHQYYRLVDLQKLTSQPPGFVKEILTEIAVYNTMPPHK 259
Query: 208 NMWELKPEYRCYKEEEKKEE 227
+MWELKPEYR Y++++K+ E
Sbjct: 260 SMWELKPEYRSYRKDKKETE 279
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQP 24
+F AFEKHQYY + DL K+T QP
Sbjct: 216 IFHAFEKHQYYRLVDLQKLTSQP 238
>gi|196011287|ref|XP_002115507.1| hypothetical protein TRIADDRAFT_59521 [Trichoplax adhaerens]
gi|190581795|gb|EDV21870.1| hypothetical protein TRIADDRAFT_59521 [Trichoplax adhaerens]
Length = 256
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 65/255 (25%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
++D++ A + VWL+KVPK+V+ W+K + G +KI + + ++ L + T
Sbjct: 7 SVDVSSADQSVWLLKVPKFVSQAWQKSESG-KVGSVKIQKKGPNEEMLFLLENSLTTATS 65
Query: 87 PNEEKIPKDHRL------DVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
E IP +++L Q+ +++L + + P+ + GK+V+K+
Sbjct: 66 SGEANIPTEYKLVSNECGQYQVALKRSLSIDNAADSSTEPEIV----------GKVVRKI 115
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH---------------- 184
+ R + Y+ LK A P RQ K L ++V Y+PVS+H
Sbjct: 116 DLRALNERMYLNLKRRKTELAKSPRRQPKFLSQVVNTYRPVSDHVELRVPVQKKEEGKRA 175
Query: 185 ----------------KH---------------LTYLKEILKEVCNYNLKNP-HKNMWEL 212
KH + YLK I+ E+ +N K ++N+WEL
Sbjct: 176 RADRDHVKEMLFAAFEKHQYYSLKSLADITQQPVMYLKGIMHEIGQFNTKEKRYRNLWEL 235
Query: 213 KPEYRCYKEEEKKEE 227
KPEYR Y +K ++
Sbjct: 236 KPEYRHYSSSKKGQD 250
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLFAAFEKHQYY++K L IT+QP++ L G + K +Y N WE P
Sbjct: 185 MLFAAFEKHQYYSLKSLADITQQPVMYLKGIMHEIGQFNTKEKRY-RNLWELKP 237
>gi|313225075|emb|CBY20868.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 108/243 (44%), Gaps = 59/243 (24%)
Query: 28 LDLTQASRGV--WLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
L + A+ G+ WLVKVPKY+ KW P + E GK++I R+ G + V+ L E
Sbjct: 24 LKMNTANSGLNWWLVKVPKYLGEKWLSSPTS-EVGKIEIRRDKG-RTEVNFKLDE--RLA 79
Query: 86 DPNEEKIPKDHRLDVQIVNR-QTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRP 144
+ E + P DH+L + ++ +T+G+ + I E+ +EG IVQ C P
Sbjct: 80 NQGETRTPIDHKLRLSAPSKSETIGILCRSKKFEDGQEI----EERSVEGTIVQNAVCSP 135
Query: 145 YADSC--YMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSN------------------- 183
+ SC YMK KL + ++ L ++ Q+ KPV+
Sbjct: 136 ASMSCDLYMKQKLLNFKGPEMQRKRAVQLTEVPQHIKPVNGITRKEIQEAKGNEKRTRMD 195
Query: 184 --------------HKHLT-------------YLKEILKEVCNYNLKNPHKNMWELKPEY 216
H++ T +LKE LKE+ YN + +NMWELKPEY
Sbjct: 196 DNQLTSRLLELFEKHQYYTLKDLCDITKQPTAFLKEKLKEIAVYNSRATQRNMWELKPEY 255
Query: 217 RCY 219
R Y
Sbjct: 256 RNY 258
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNL 28
L FEKHQYY +KDL ITKQP L
Sbjct: 203 LLELFEKHQYYTLKDLCDITKQPTAFL 229
>gi|313245840|emb|CBY34829.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 59/243 (24%)
Query: 28 LDLTQASRGV--WLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
L + A+ G+ WLVKVPKY+ KW P + E GK++I R G + V+ L E
Sbjct: 24 LKMNTANSGLNWWLVKVPKYLGEKWLSSPTS-EVGKIEIRREKG-RTEVNFKLDE--RLA 79
Query: 86 DPNEEKIPKDHRLDVQIVNR-QTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRP 144
+ E + P DH+L + ++ +T+G+ + I E+ +EG IVQ C P
Sbjct: 80 NQGETRTPIDHKLRLSAPSKSETIGILCRSKKFEDGQEI----EERSVEGTIVQNAVCSP 135
Query: 145 YADSC--YMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSN------------------- 183
+ SC YMK KL + ++ L ++ Q+ KPV+
Sbjct: 136 ASMSCDLYMKQKLLNFKGPEMQRKRAVQLTEVPQHIKPVNGITRKEIQEAKGNEKRTRMD 195
Query: 184 --------------HKHLT-------------YLKEILKEVCNYNLKNPHKNMWELKPEY 216
H++ T +LKE LKE+ YN + +NMWELKPEY
Sbjct: 196 DNQLTSRLLELFEKHQYYTLKDLCDITKQPTAFLKEKLKEIAVYNSRATQRNMWELKPEY 255
Query: 217 RCY 219
R Y
Sbjct: 256 RNY 258
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNL 28
L FEKHQYY +KDL ITKQP L
Sbjct: 203 LLELFEKHQYYTLKDLCDITKQPTAFL 229
>gi|148703867|gb|EDL35814.1| general transcription factor IIF, polypeptide 2, isoform CRA_b [Mus
musculus]
Length = 155
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 26/167 (15%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G+ VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQGRTE-VSFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ SE+ ++
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSEQPSVD------F 108
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH 186
P Y ++ +++S+P+R + LDK+V NYKPV+NH++
Sbjct: 109 GSYPSHGYGYHPVQWVHFLESSKPVRLSQQLDKVVTTNYKPVANHQY 155
>gi|11514676|pdb|1F3U|A Chain A, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514678|pdb|1F3U|C Chain C, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514680|pdb|1F3U|E Chain E, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514682|pdb|1F3U|G Chain G, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
Length = 118
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 67/124 (54%), Gaps = 19/124 (15%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G+ VS +L+E +
Sbjct: 6 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTE-VSFTLNEDLANI 64
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 65 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 113
Query: 141 ECRP 144
ECRP
Sbjct: 114 ECRP 117
>gi|268562593|ref|XP_002638649.1| Hypothetical protein CBG23703 [Caenorhabditis briggsae]
Length = 354
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 38/188 (20%)
Query: 33 ASRGVWLVKVPKYVANKWEKVPGNIEAGKLKI---------------------------- 64
A RG WLVKVP+Y++ WE G + GKL I
Sbjct: 48 AKRGCWLVKVPRYLSELWEANEGAV-VGKLHIGPEIWDFYNRKLGFCYYCPAVLNQKKIE 106
Query: 65 ------VRNPGQK--PVVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIP 116
+R P K + S + T +IP + + V T+ V S
Sbjct: 107 FQTSQGLRQPPPKDEGEGTSSTTTNTAVTSSRVSEIPTQYTFILHDVKGSTMSVLSEDKQ 166
Query: 117 PVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ 176
+ +A V ++ KL +EG+I+++ ECRP A S YMK+KL I+K +QP + VK +DK
Sbjct: 167 ALGAEATV-KTGKLAIEGRIMKRAECRPPATSKYMKMKLAHIVKNTQPKKTVKMIDKAAV 225
Query: 177 NYKPVSNH 184
+KPV+ H
Sbjct: 226 KFKPVAVH 233
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEE 227
++Y+KE+L+E+ YN PHK++W LKPEY YK + E+
Sbjct: 314 VSYVKEVLQEIAVYNTAPPHKSLWCLKPEYCNYKLNAQSEQ 354
>gi|358332274|dbj|GAA31513.2| transcription initiation factor TFIIF subunit beta [Clonorchis
sinensis]
Length = 330
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 48/145 (33%)
Query: 127 SEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH-- 184
S +L L G++ + ECRP ++ YM LK + + ++P +V+ L + V+NYKPV+NH
Sbjct: 177 SRRLSLFGRVNSRAECRPPPNTRYMMLKAQQMKEINRPKHEVRLLYEPVRNYKPVANHIS 236
Query: 185 -------------------------------KH---------------LTYLKEILKEVC 198
+H +TYL EILKE+
Sbjct: 237 NIEYEARKRAEGKNLRREKDDVMQDLFKAFERHQYYTIRDLILLTKQPVTYLTEILKEIA 296
Query: 199 NYNLKNPHKNMWELKPEYRCYKEEE 223
+N + PHKNMWELKPEYR Y E
Sbjct: 297 IFNPRAPHKNMWELKPEYRHYAPSE 321
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPG-------QKPVVSLS 77
+ ++D ++A GVWLVKVPKY+A W K + GK+ I +P ++PV
Sbjct: 17 LYSVDTSRAKDGVWLVKVPKYLAELWRKSGPDGVVGKVVIASSPAPGQAEGNRRPVG--- 73
Query: 78 LSEATMCVDPN--------EEKIPKDHRLDVQ 101
S+ T+ DP+ + IPK+H+ +Q
Sbjct: 74 -SQVTLVTDPDLLAHAGETGDLIPKEHQFFIQ 104
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY I+DL+ +TKQP+ L ++ + P N WE P
Sbjct: 262 LFKAFERHQYYTIRDLILLTKQPVTYLTEILKEIAIFNPRAPH--KNMWELKP 312
>gi|226471060|emb|CAX70611.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 304
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 48/150 (32%)
Query: 127 SEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
S +L L G++ + ECRP ++ YM LK + ++P +V L + V+NYKPV+NH +
Sbjct: 152 SRRLSLFGRVNSRAECRPPPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTN 211
Query: 187 ------------------------------------------------LTYLKEILKEVC 198
L YL EILKE+
Sbjct: 212 NIEYENRRKAEGKNLRREKEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIA 271
Query: 199 NYNLKNPHKNMWELKPEYRCYKEEEKKEEA 228
+N PHKNMWELKPEYR Y E + K E+
Sbjct: 272 IFNTHIPHKNMWELKPEYRHYTEPDTKIES 301
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 237 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 287
>gi|226471062|emb|CAX70612.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
gi|226487346|emb|CAX75536.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 335
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 48/150 (32%)
Query: 127 SEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
S +L L G++ + ECRP ++ YM LK + ++P +V L + V+NYKPV+NH +
Sbjct: 183 SRRLSLFGRVNSRAECRPPPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTN 242
Query: 187 ------------------------------------------------LTYLKEILKEVC 198
L YL EILKE+
Sbjct: 243 NIEYENRRKAEGKNLRREKEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIA 302
Query: 199 NYNLKNPHKNMWELKPEYRCYKEEEKKEEA 228
+N PHKNMWELKPEYR Y E + K E+
Sbjct: 303 IFNTHIPHKNMWELKPEYRHYTEPDTKIES 332
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 268 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 318
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV------RNPGQKPVVSLSLSEA 81
+D ++A GVWLVKVPKY+A W + GK+ I RN + P ++L
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 81
Query: 82 TMCVDPNEEK---IPKDHRLDVQI 102
+ ++ + E IPK+H+ +Q
Sbjct: 82 SELLNQSGESGNLIPKEHQFLIQT 105
>gi|226487340|emb|CAX75535.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 335
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 48/150 (32%)
Query: 127 SEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
S +L L G++ + ECRP ++ YM LK + ++P +V L + V+NYKPV+NH +
Sbjct: 183 SRRLSLFGRVNSRAECRPPPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTN 242
Query: 187 ------------------------------------------------LTYLKEILKEVC 198
L YL EILKE+
Sbjct: 243 NIEYENRRKAEGKNLRREKEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIA 302
Query: 199 NYNLKNPHKNMWELKPEYRCYKEEEKKEEA 228
+N PHKNMWELKPEYR Y E + K E+
Sbjct: 303 IFNTHIPHKNMWELKPEYRHYTEPDTKIES 332
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 268 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 318
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV------RNPGQKPVVSLSLSEA 81
+D ++A GVWLVKVPKY+A W + GK+ I RN + P ++L
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 81
Query: 82 TMCVDPNEEK---IPKDHRLDVQI 102
+ ++ + E IPK+H+ +Q
Sbjct: 82 SELLNQSGESGNLIPKEHQFLIQT 105
>gi|226487338|emb|CAX75534.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 335
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 48/150 (32%)
Query: 127 SEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
S +L L G++ + ECRP ++ YM LK + ++P +V L + V+NYKPV+NH +
Sbjct: 183 SRRLSLFGRVNSRAECRPPPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTN 242
Query: 187 ------------------------------------------------LTYLKEILKEVC 198
L YL EILKE+
Sbjct: 243 NIEYENRRKAEGKNLRREKEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIA 302
Query: 199 NYNLKNPHKNMWELKPEYRCYKEEEKKEEA 228
+N PHKNMWELKPEYR Y E + K E+
Sbjct: 303 IFNTHIPHKNMWELKPEYRHYTEPDTKIES 332
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 268 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 318
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV------RNPGQKPVVSLSLSEA 81
+D ++A GVWLVKVPKY+A W + GK+ I RN + P ++L
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 81
Query: 82 TMCVDPNEEK---IPKDHRLDVQI 102
+ ++ + E IPK+H+ +Q
Sbjct: 82 SELLNQSGESGNLIPKEHQFLIQT 105
>gi|405961158|gb|EKC27003.1| General transcription factor IIF subunit 2 [Crassostrea gigas]
Length = 188
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 66 RNPGQKPVVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAI-- 123
R PGQKP V+ ++ E P E IP++H + + + Q L VFS V ++
Sbjct: 7 RFPGQKPKVTFTIDEELAKGPPGEMPIPREHNMILTGLGNQNLVVFSQTPVTVKQESSSG 66
Query: 124 ---VPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKP 180
V S+++ +EGK++Q+ +C+P YM LK + ++P R+V + K+V YKP
Sbjct: 67 SVDVVASDRIAVEGKVIQRADCQPDKTISYMNLKRKQLEIKNKPQREVIQITKVVPMYKP 126
Query: 181 VSNHKH 186
V+NH H
Sbjct: 127 VNNHVH 132
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVN 27
+LF AFEKHQYYN+KDLV +TKQPI+
Sbjct: 156 ILFNAFEKHQYYNVKDLVTLTKQPIIG 182
>gi|76154945|gb|AAX26335.2| SJCHGC05520 protein [Schistosoma japonicum]
Length = 322
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 65/147 (44%), Gaps = 48/147 (32%)
Query: 127 SEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
S +L L G++ + ECRP ++ YM LK + ++P +V L + V+NYKPV+NH +
Sbjct: 176 SRRLSLFGRVNSRAECRPPPNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTN 235
Query: 187 ------------------------------------------------LTYLKEILKEVC 198
L YL EILKE+
Sbjct: 236 NIEYENRRKAEGKNLRREKEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIA 295
Query: 199 NYNLKNPHKNMWELKPEYRCYKEEEKK 225
+N PHKNMWELKPEYR Y E + K
Sbjct: 296 IFNTHIPHKNMWELKPEYRHYTEPDTK 322
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
LF AFE+HQYY+IKDLV +TKQP+ L ++ +P N WE P
Sbjct: 261 LFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPH--KNMWELKP 311
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIV------RNPGQKPVVSLSLSEA 81
+D ++A GVWLVKVPKY+A W + GK+ I RN + P ++L
Sbjct: 15 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 74
Query: 82 TMCVDPNEEK---IPKDHRLDVQI 102
+ ++ + E IPK+H+ +Q
Sbjct: 75 SELLNQSGESGNLIPKEHQFLIQT 98
>gi|149049983|gb|EDM02307.1| general transcription factor IIF, polypeptide 2, isoform CRA_d
[Rattus norvegicus]
Length = 108
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G+ VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFS 112
P P++H +Q V QTL VF+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
>gi|149049982|gb|EDM02306.1| general transcription factor IIF, polypeptide 2, isoform CRA_c
[Rattus norvegicus]
Length = 104
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G+ VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFS 112
P P++H +Q V QTL VF+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
>gi|339236175|ref|XP_003379642.1| general transcription factor IIF subunit 2 [Trichinella spiralis]
gi|316977683|gb|EFV60754.1| general transcription factor IIF subunit 2 [Trichinella spiralis]
Length = 192
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 49/186 (26%)
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYAD 147
+E P +HR + QTL + N E +K +L G++VQK ECRP ++
Sbjct: 13 DEGNTPLEHRFITSGFSNQTLLPMKTHAEESN------EFKKFVLLGRVVQKAECRPPSN 66
Query: 148 SCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVS------------------------- 182
YMK+K++ I S+P +V +++ +KP S
Sbjct: 67 DAYMKMKINHIEAVSKPQNKVITINRAEVKFKPSSVPTAEPSKKAEKSVRLSREELRDAL 126
Query: 183 ------------------NHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEK 224
+ +LK++L E+ YN ++P++ WELKPEYR Y +++
Sbjct: 127 FLAFEKNPHYKLVDLVRMTQQPPNFLKDVLSEIACYNTQHPNRYTWELKPEYRLYSDDKP 186
Query: 225 KEEATA 230
+ +++
Sbjct: 187 ESSSSS 192
>gi|47214870|emb|CAG00918.1| unnamed protein product [Tetraodon nigroviridis]
Length = 369
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 64/227 (28%)
Query: 24 PIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPV-VSLSLSE-- 80
P +DLT A + VWLVKVP Y++ +W+K G E GK++ + Q VS +L++
Sbjct: 2 PGTKVDLTAAKQNVWLVKVPNYLSLQWQKAAGAGEVGKVRFAKKGNQGMAEVSFTLNKEQ 61
Query: 81 -ATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHY-----IP----------------PV 118
T +D +P+ H +Q + QTL VF+ +P P+
Sbjct: 62 AMTEGLDNQPFSVPRQHTFSMQPMGGQTLAVFTQSSSGAQLPLSAVAKGGGSRRSRQGPI 121
Query: 119 NPDAIVPESEKLMLEG---------------------------------------KIVQK 139
+ E+ M EG K+VQ+
Sbjct: 122 RQVSFTLNKEQAMTEGLDNQPFSVPRQHTFSMQPMGGQTLAVFTQSSSDEIAFLGKVVQR 181
Query: 140 LECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
EC+P Y++LK K+S+ R ++ + +YKP ++H +
Sbjct: 182 AECKPKFFEDYLRLKKLQAKKSSKVNRLSLQIEDPITSYKPTASHSY 228
>gi|148703866|gb|EDL35813.1| general transcription factor IIF, polypeptide 2, isoform CRA_a [Mus
musculus]
Length = 104
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G+ VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQGRTE-VSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFS 112
P P++H +Q V QTL VF+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
>gi|148703869|gb|EDL35816.1| general transcription factor IIF, polypeptide 2, isoform CRA_d [Mus
musculus]
Length = 130
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFS 112
P P++H +Q V QTL VF+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
>gi|149049980|gb|EDM02304.1| general transcription factor IIF, polypeptide 2, isoform CRA_a
[Rattus norvegicus]
Length = 125
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 57/123 (46%), Gaps = 49/123 (39%)
Query: 151 MKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH----------------------- 186
MKLK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 1 MKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVL 60
Query: 187 -------------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKE 221
+ YLKEILKE+ N+K HKN WELKPEYR Y+
Sbjct: 61 DMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQT 120
Query: 222 EEK 224
EEK
Sbjct: 121 EEK 123
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 62 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIH--KNTWELKP 113
>gi|281349943|gb|EFB25527.1| hypothetical protein PANDA_002952 [Ailuropoda melanoleuca]
Length = 123
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 49/118 (41%)
Query: 158 IIKASQPLRQVKHLDKIVQ-NYKPVSNHKH------------------------------ 186
I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 6 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAF 65
Query: 187 ------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
+ YLKEILKE+ N+K HKN WELKPEYR Y+ EEK +
Sbjct: 66 EKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGTHKNTWELKPEYRHYQGEEKSD 123
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 60 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGTH--KNTWELKP 111
>gi|432112403|gb|ELK35198.1| General transcription factor IIF subunit 2 [Myotis davidii]
Length = 187
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 49/118 (41%)
Query: 158 IIKASQPLRQVKHLDKIVQ-NYKPVSNHKH------------------------------ 186
I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 70 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQYVLDMLFSAF 129
Query: 187 ------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
+ YLKEILKE+ N+K HKN WELKPEYR Y+ EEK +
Sbjct: 130 EKHQYYNLKDLVDITKQPVVYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQGEEKSD 187
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L G+ VK N WE P
Sbjct: 124 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGIQNVK--GIHKNTWELKP 175
>gi|342326290|gb|AEL23060.1| transcription initiation factor IIF [Cherax quadricarinatus]
Length = 88
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 28/29 (96%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPE 215
+ +LKEILKEVC+YN+KNPHKNMWELKPE
Sbjct: 60 IMHLKEILKEVCDYNVKNPHKNMWELKPE 88
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
ML+AAFEKHQYYNIKDL KITKQPI++L + VK P N WE P
Sbjct: 36 MLYAAFEKHQYYNIKDLQKITKQPIMHLKEILKEVCDYNVKNPH--KNMWELKP 87
>gi|410927374|ref|XP_003977124.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 206
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 62/193 (32%)
Query: 74 VSLSLSEATMCVDPNEEK---IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKL 130
V L + V+ E K +P+ H + VQ Q LGVFS S+ +
Sbjct: 22 VRFWLKKDLALVEGQENKMVAVPRKHSITVQPAGGQMLGVFSE------------NSDDI 69
Query: 131 MLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH------ 184
GK++ + +C P Y++LK K+ Q + ++ + + NYKPVS H
Sbjct: 70 DYLGKVLVRADCTPAYFDEYLRLKRLEKKKSPQKAKMLQ-IQSPIANYKPVSKHPYHRED 128
Query: 185 -------------------------KH---------------LTYLKEILKEVCNYNLKN 204
KH + YLK IL+E+ YN+
Sbjct: 129 KRKVGAQYTSMDKKLVMDLLFSAFEKHQYCNIKQLVDMTKQPVVYLKSILREIGVYNVTG 188
Query: 205 PHKNMWELKPEYR 217
HK WEL+PEYR
Sbjct: 189 THKYTWELRPEYR 201
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLV 40
+LF+AFEKHQY NIK LV +TKQP+V L GV+ V
Sbjct: 147 LLFSAFEKHQYCNIKQLVDMTKQPVVYLKSILREIGVYNV 186
>gi|345315416|ref|XP_001520962.2| PREDICTED: general transcription factor IIF subunit 2-like,
partial [Ornithorhynchus anatinus]
Length = 85
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP+V L + R + + V N WE P
Sbjct: 24 MLFSAFEKHQYYNIKDLVDITKQPVVY--LKEILREIGIHNVKGTHKNTWELKP 75
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEE 223
+ YLKEIL+E+ +N+K HKN WELKPEYR Y+ E+
Sbjct: 48 VVYLKEILREIGIHNVKGTHKNTWELKPEYRHYQGED 84
>gi|296481326|tpg|DAA23441.1| TPA: general transcription factor IIF, polypeptide 2, 30kDa-like
[Bos taurus]
Length = 118
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 49/118 (41%)
Query: 158 IIKASQPLRQVKHLDKIVQ-NYKPVSNHKH------------------------------ 186
I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 1 IEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAF 60
Query: 187 ------------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
++YLK+ILKE+ N+K HKN WELKPEYR Y+ EEK +
Sbjct: 61 EKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYRHYQVEEKSD 118
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 55 MLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIH--KNTWELKP 106
>gi|47230589|emb|CAF99782.1| unnamed protein product [Tetraodon nigroviridis]
Length = 362
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQA 33
MLF+AFEKHQYYNIKDLV ITKQP+ ++ +Q+
Sbjct: 75 MLFSAFEKHQYYNIKDLVDITKQPVADIVPSQS 107
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 137 VQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
VQ+ +CRP + YM+LK I ++S+P R + L V NYKPV+NH +
Sbjct: 1 VQRADCRPAVNENYMRLKRLQIEESSKPTRLSQQLQNPVTNYKPVANHSY 50
>gi|90086425|dbj|BAE91765.1| unnamed protein product [Macaca fascicularis]
Length = 125
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 62 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIH--KNTWELKP 113
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 49/117 (41%)
Query: 159 IKASQPLRQVKHLDKIVQ-NYKPVSNHKH------------------------------- 186
+ ++P+R + L+K+V NYKPV+NH++
Sbjct: 9 LTGAKPVRLSQQLEKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFE 68
Query: 187 -----------------LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
+ YLKEILKE+ N+K HKN WELKPEYR Y+ EEK +
Sbjct: 69 KHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD 125
>gi|157830215|pdb|1BBY|A Chain A, Dna-Binding Domain From Human Rap30, Nmr, Minimized
Average
gi|157834686|pdb|2BBY|A Chain A, Dna-Binding Domain From Human Rap30, Nmr, 30 Structures
Length = 69
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 12 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIH--KNTWELKP 63
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYK 220
+ YLKEILKE+ N+K HKN WELKPEYR Y+
Sbjct: 36 VVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQ 69
>gi|147863867|emb|CAN81117.1| hypothetical protein VITISV_005903 [Vitis vinifera]
Length = 584
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLS--LSEATM 83
N+D +++ R VWL+K P V+ P K +VSL L+
Sbjct: 9 ANVDTSRSERAVWLMKCPPVVSRSLSSS-------SASDSLRPVAKVIVSLDPLLANDDD 61
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVN---------PDAIVPESE--KLML 132
P I +H D ++ + G S P P A+ ES + +
Sbjct: 62 DSPPQGFMIAHEHAFDYELFTMELAGTESGNAPKCYSMDMSQDFIPMAVFSESSQGRTAV 121
Query: 133 EGKIVQKLECRPYADSC--YMKLKLDSIIKASQPLRQVKHLDKIVQNY-KPVSNHKHLT- 188
EGKI+ K + +P+ ++ Y KL + K RQ++ +D ++ +P+ +
Sbjct: 122 EGKILNKFDMKPHNENIQNYGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMVIASA 181
Query: 189 ---YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LK++LK++C YN K ++ +ELKPEY+ ++E
Sbjct: 182 VSQFLKDLLKDLCVYNNKGTNQGTYELKPEYKRKRKE 218
>gi|320167105|gb|EFW44004.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 332
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 63/237 (26%)
Query: 31 TQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVS-------LSLSEATM 83
++ R VWLVKVP+Y AN E + L++ P P S + +
Sbjct: 107 SRLGRQVWLVKVPEYFANALEHLEDQTHFATLQM---PTSAPAPSRFGAPREIGIDIELD 163
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECR 143
D N+ +P +R+ + + N FS ES L EG VQK +
Sbjct: 164 LTDQNDLLLPHQYRMQI-LPNTLGAAAFSE-----------DESGNLAFEGTAVQKCDVM 211
Query: 144 PYADS---CYMKLKLD------------SIIKA-SQPLRQVK---------HLDK----- 173
P + Y+ K + +++KA +P +Q + +DK
Sbjct: 212 PVLNDEYRAYLSAKRELEAKPKFETQQVAVVKALYEPEKQREKRRDVDKRERIDKEQLKD 271
Query: 174 ----IVQNYKPVS-------NHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+ + Y+ S ++ YLK++L E+C+YN + ++N ++LKPE+ Y
Sbjct: 272 QITAVFERYQFASLQQLQQLTNQPPNYLKQVLSELCDYNTRGANRNTYQLKPEFSHY 328
>gi|384498641|gb|EIE89132.1| hypothetical protein RO3G_13843 [Rhizopus delemar RA 99-880]
Length = 298
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 24/159 (15%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKV-PGNIEAGKLKIVRN---PGQKPVVSLSLSEAT 82
+L L QA VWLVKVPK++A W+ + N+ G L+I ++ PG+ +SL L E T
Sbjct: 29 DLRLDQADNKVWLVKVPKFLAETWKNIDQDNVHLGSLRIYKDAQPPGKSSRISLVLPENT 88
Query: 83 MCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLEC 142
M IPK++ + + Q VFS + G + +
Sbjct: 89 MT-----SHIPKEYSISLLSAEVQNKFVFSQ------------TEHGKTISGTVHHECVA 131
Query: 143 RPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPV 181
P + Y + + +A P R + L QN +PV
Sbjct: 132 VPTEANAYRNIMRKRVREAGTPQRTTQVLG---QNNQPV 167
>gi|12834996|dbj|BAB23115.1| unnamed protein product [Mus musculus]
Length = 40
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEK 224
+ YLKEILKE+ N+K HKN WELKPEYR Y+ EEK
Sbjct: 1 VGYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQTEEK 38
>gi|395529641|ref|XP_003766918.1| PREDICTED: general transcription factor IIF subunit 2-like,
partial [Sarcophilus harrisii]
Length = 81
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 24/25 (96%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
MLF+AFEKHQYYNIKDLV ITKQP+
Sbjct: 57 MLFSAFEKHQYYNIKDLVDITKQPV 81
>gi|444517476|gb|ELV11586.1| General transcription factor IIF subunit 2 [Tupaia chinensis]
Length = 81
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
MLF+AFEKHQYYN+KDLV ITKQP+
Sbjct: 47 MLFSAFEKHQYYNLKDLVDITKQPV 71
>gi|47199299|emb|CAF89231.1| unnamed protein product [Tetraodon nigroviridis]
Length = 146
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+TYLKEILKE+ YN K PHK+ WE+KPEYR
Sbjct: 115 VTYLKEILKEIGTYNNKGPHKSTWEVKPEYR 145
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF+AFEKHQ+YNIK+LV ITKQP+ L
Sbjct: 91 MLFSAFEKHQHYNIKELVDITKQPVTYL 118
>gi|254566865|ref|XP_002490543.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030339|emb|CAY68262.1| hypothetical protein PAS_chr1-4_0679 [Komagataella pastoris
GS115]
gi|328350932|emb|CCA37332.1| transcription initiation factor TFIIF beta subunit [Komagataella
pastoris CBS 7435]
Length = 372
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%), Gaps = 4/48 (8%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKWEKVPGNI---EAGKLKIVRNPG 69
++NLDL +A + VWLV++PK++A+KW K P N+ E GKL+I + P
Sbjct: 39 LLNLDLEEADKKVWLVRLPKFLADKW-KDPKNLNGQELGKLRITQAPA 85
>gi|429961404|gb|ELA40949.1| hypothetical protein VICG_02038 [Vittaforma corneae ATCC 50505]
Length = 236
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 66/236 (27%)
Query: 36 GVWLVKVPKYVANKWEKVPGNIEAGKLKIVR-NPGQKPVVSLSLSEATMCVDPNEEKIPK 94
VWL KVPKY+ + K+ G L + R +P + P + + LS A + + IP
Sbjct: 11 SVWLTKVPKYLGEQILKLRKGSVVGTLSVGRSSPAETPALQIKLSNALL-----DTGIPT 65
Query: 95 DHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLK 154
+H ++++ + Y+ D E + +EG I ++ RP +S Y++ K
Sbjct: 66 EHIIEIKDKGK------CMYLASHCRDNAELNEETMDVEGIINKECFIRPVLNSEYLQYK 119
Query: 155 ----------------LDSI--IKASQPLRQVKHLDKIVQN------------------- 177
+D +K S +K +D + +
Sbjct: 120 RRMKNAEESTEEKVKVIDYFAEVKRSAKYSTLKEMDILARKRKQMLQDKKRERLEKTDVM 179
Query: 178 ---YKPVSNHKHLT-------------YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+ HK T Y++EI+ E+C N K HKN +ELKPEY+
Sbjct: 180 EIVFNAFEKHKRWTVRDLADFSGQPVAYIQEIVNEICVLN-KKDHKNTYELKPEYK 234
>gi|242820387|ref|XP_002487500.1| transcription initiation factor iif, beta subunit [Talaromyces
stipitatus ATCC 10500]
gi|218713965|gb|EED13389.1| transcription initiation factor iif, beta subunit [Talaromyces
stipitatus ATCC 10500]
Length = 363
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 47/188 (25%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD TQA + VWL ++P + W ++ + I+ G +++ P +SL L++
Sbjct: 40 DLDFTQAGQNVWLTRIPTDLWKYWSQLDDDEEIQIGTVRVEGEPHDIKRISLRLND---- 95
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLG-------VFSHYIPPVNP---DAIVPESEKLMLE- 133
DPN + IPKD+ L Q V+ ++ +FS P + D + E+ ++ E
Sbjct: 96 -DPNSKDIPKDYILQRQNVDPKSGSFAVQNSYIFSEKDLPGHKNKVDEMFGETRSMLYES 154
Query: 134 -----------------------------GKIVQKLECRPYADSCYMKLKLDSIIKASQP 164
GK+ + C P ++ Y ++ +KA +P
Sbjct: 155 MKREARKKATKRKWEPYVRKTIPKQTALVGKVADEFNCMPVENAEYQRISEAKALKALEP 214
Query: 165 LRQVKHLD 172
+V+ +D
Sbjct: 215 REKVRLID 222
>gi|260946685|ref|XP_002617640.1| hypothetical protein CLUG_03084 [Clavispora lusitaniae ATCC 42720]
gi|238849494|gb|EEQ38958.1| hypothetical protein CLUG_03084 [Clavispora lusitaniae ATCC 42720]
Length = 392
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEA---GKLKIVRNPGQKPVVSLSLSEAT 82
++++LT+ ++ VWLVK+P+Y+A +W P N+ G++KI +N KPV E
Sbjct: 58 LDMNLTRGNQKVWLVKLPRYLAERWTN-PANLNGQQLGQVKIRQN--NKPVNGKKKLEVK 114
Query: 83 MCVD--PNEEKIPKDHRLDVQIVNRQTLGVFSHYI 115
+ ++ P E IP H D+ I+N Q V + Y+
Sbjct: 115 LVLNDSPETEDIP--HEYDLSILNTQ---VHNSYV 144
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 188 TYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATADDDDD 235
TYLKE L+ + N N K P+ + + LKPEY+ ++ E+ A DD
Sbjct: 326 TYLKESLESIANLNKKGPYTSKYNLKPEYKRLRDAERAARLGAVVGDD 373
>gi|213410311|ref|XP_002175925.1| transcription initiation factor IIF subunit beta
[Schizosaccharomyces japonicus yFS275]
gi|212003972|gb|EEB09632.1| transcription initiation factor IIF subunit beta
[Schizosaccharomyces japonicus yFS275]
Length = 298
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 71/247 (28%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LD + + VWLVK+PK++ +KW +P + A L VR + + L L ++ +D
Sbjct: 19 DLDTSGIASRVWLVKLPKFLLDKWNSIPPD-HAADLGCVRVMNDE--IQLLLRDSAENMD 75
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
+PK++ L V + VF + P S++ L G + + P
Sbjct: 76 -----VPKEYNLKVMNKYVRNSYVFREFEQPSG-------SKQTALVGTVAHECNVSPVI 123
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLD--------------------KIVQNYKP------ 180
+ Y ++ + AS P R+V+ +D ++N KP
Sbjct: 124 NDDYRRVMHKRALAASAPRRRVQMIDDRGGSLLAPGTLGARSRSTTSFIRNVKPRTGEVL 183
Query: 181 -----------------VSNHKHLT-------------YLKEILKEVCNYNLKNPHKNMW 210
++++ T YLKE+L + N + P+ +
Sbjct: 184 KNARIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAVLNKRGPYALKY 243
Query: 211 ELKPEYR 217
LKPEY+
Sbjct: 244 SLKPEYK 250
>gi|296818645|ref|XP_002849659.1| transcription initiation factor IIF subunit beta [Arthroderma otae
CBS 113480]
gi|238840112|gb|EEQ29774.1| transcription initiation factor IIF subunit beta [Arthroderma otae
CBS 113480]
Length = 381
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T A++ VWL ++P+ + +W K+ + I+ G +++ +P +SL L +
Sbjct: 41 DLDFTNAAQNVWLTRIPRTLWERWSKLDDDEEIQIGTVRVEGDPTDIKRISLRLLDI--- 97
Query: 85 VDPNEEKIPKDHRLDVQIVN--RQTLGVFSHYI 115
P + IPKD+ L Q VN R V + Y+
Sbjct: 98 --PQNKGIPKDYNLRRQNVNADRSAYAVQNTYV 128
>gi|425765785|gb|EKV04433.1| Transcription initiation factor iif, beta subunit [Penicillium
digitatum PHI26]
gi|425783911|gb|EKV21727.1| Transcription initiation factor iif, beta subunit [Penicillium
digitatum Pd1]
Length = 363
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD TQA + VWL ++P+ + W + + IE G +++ P VSL L +
Sbjct: 38 DLDFTQAGQNVWLSRLPRSLWEHWAHLDDDEEIEVGIMRVEGTPNNIKRVSLRLHDR--- 94
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLG 109
P+ +IPKD+ L Q V+ G
Sbjct: 95 --PDNREIPKDYTLQRQTVDPSGTG 117
>gi|313218415|emb|CBY43010.1| unnamed protein product [Oikopleura dioica]
Length = 129
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 28 LDLTQASRGV--WLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
L + A+ G+ WLVKVPKY+ KW P + E GK++I R G + V+ L E
Sbjct: 24 LKMNTANSGLNWWLVKVPKYLGEKWLSSPTS-EVGKIEIRREKG-RTEVNFKLDE--RLA 79
Query: 86 DPNEEKIPKDHRLDVQIVNR-QTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQ 138
+ E + P DH+L + ++ +T+G+ + I E+ +EG IVQ
Sbjct: 80 NQGETRTPIDHKLRLSAPSKSETIGILCRSKKFEDGQEI----EERSVEGTIVQ 129
>gi|449469921|ref|XP_004152667.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
gi|449520699|ref|XP_004167371.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
Length = 260
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 31/139 (22%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
NLD +A R VWL+K P VA W+ P P SL L++ + +D
Sbjct: 13 NLDTGKADRSVWLMKCPLLVAKSWQAHP-----------------PSDSLPLAKVILSLD 55
Query: 87 PNEEKIPKDHRLDVQIVNRQT--------LGVFSHYIPPVNPDAIVPESE--KLMLEGKI 136
P + + +++ +T L +F ++P + E+ K+ +EGK+
Sbjct: 56 PLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPM----CVFSEASQGKVSMEGKV 111
Query: 137 VQKLECRPYADSCYMKLKL 155
K + +P++++ M KL
Sbjct: 112 EHKFDMKPHSENLEMYGKL 130
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
+LKEIL E+C YN + ++ +ELKPEY+ E+ E
Sbjct: 223 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260
>gi|255931265|ref|XP_002557189.1| Pc12g03030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581808|emb|CAP79930.1| Pc12g03030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD +QA + VWL ++P+ + W + + IE G +++ P VSL L +
Sbjct: 38 DLDFSQAGQNVWLSRLPRSLWEHWAHLDDDEEIELGTMRVEGTPNDIKRVSLRLHDR--- 94
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLG 109
P+ +IPKD+ L Q V+ G
Sbjct: 95 --PDNREIPKDYTLQRQTVDPSGTG 117
>gi|359807121|ref|NP_001241605.1| uncharacterized protein LOC100788473 [Glycine max]
gi|255646380|gb|ACU23669.1| unknown [Glycine max]
Length = 262
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 71/260 (27%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
NL+ T+A R VWL+K P VA W+ P + K+ + +P S + TM +
Sbjct: 14 NLETTKAERSVWLMKCPLVVAKSWQAHPPSQPLAKVVLSLDPLHPEEDDPSAVQFTMEMA 73
Query: 87 PNEE-KIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLE---- 141
+E +PK + +L +F ++P + + + K+ +EGK+ K +
Sbjct: 74 GSEAVNMPKTY----------SLNMFKDFVP-MCVFSETSQGGKVAMEGKVEHKFDMKPH 122
Query: 142 ----------CRPYADSCYMKLKLDSII-------------------------KASQPLR 166
CR + +K + +I K +QP++
Sbjct: 123 GENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVK 182
Query: 167 QV---------KHLDKIVQNY---KPVSNHKHLT--------YLKEILKEVCNYNLKNPH 206
Q L+ I+ +P K L +LKEIL E+C YN + +
Sbjct: 183 QSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGAN 242
Query: 207 KNMWELKPEYRCYKEEEKKE 226
+ +ELKPEY+ E+ E
Sbjct: 243 QGTYELKPEYKKSVEDTSAE 262
>gi|356518378|ref|XP_003527856.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Glycine max]
Length = 262
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 69/259 (26%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
NL+ T+A R VWL+K P VA W+ P + K+ + +P S + TM +
Sbjct: 14 NLETTKAERSVWLMKCPLVVAKSWQTHPPSQPLAKVVLSLDPLHPEEDDPSAVQFTMEMA 73
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLE----- 141
E V + +L +F ++P + + + K+ +EGK+ K +
Sbjct: 74 GTEA---------VNMSKTYSLNMFKDFVP-MCVFSETSQGGKVAMEGKVEHKFDMKPHG 123
Query: 142 ---------CRPYADSCYMKLKLDSII-------------------------KASQPLRQ 167
CR + +K + +I K +QP++Q
Sbjct: 124 ENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQ 183
Query: 168 V---------KHLDKIVQNY---KPVSNHKHLT--------YLKEILKEVCNYNLKNPHK 207
L+ I+ +P K L +LKEIL E+C YN + ++
Sbjct: 184 SDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQ 243
Query: 208 NMWELKPEYRCYKEEEKKE 226
+ELKPEY+ E+ E
Sbjct: 244 GTYELKPEYKKSVEDTSAE 262
>gi|449452114|ref|XP_004143805.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 277
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEK 224
Y+KEILK++C YN K H+ +ELKPEYR E+ K
Sbjct: 240 YMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK 275
>gi|302795362|ref|XP_002979444.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
gi|300152692|gb|EFJ19333.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
Length = 270
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATA 230
+ +LKEIL ++C YN + ++ +ELKPEYR EEK +A A
Sbjct: 226 VAFLKEILNDLCTYNKRGTNQGTYELKPEYRKNPVEEKPADAAA 269
>gi|322802351|gb|EFZ22747.1| hypothetical protein SINV_80185 [Solenopsis invicta]
Length = 31
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 26/30 (86%)
Query: 146 ADSCYMKLKLDSIIKASQPLRQVKHLDKIV 175
AD+CYMKLKL+SI +AS P RQV+ LD++V
Sbjct: 2 ADNCYMKLKLESIKRASVPQRQVQQLDRVV 31
>gi|19111874|ref|NP_595082.1| transcription factor TFIIF complex beta subunit Tfg2 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582884|sp|O94424.1|T2FB_SCHPO RecName: Full=Transcription initiation factor IIF subunit beta;
AltName: Full=ATP-dependent helicase TFG2; AltName:
Full=TFIIF medium subunit; AltName: Full=TFIIF-beta
gi|7801320|emb|CAB91188.1| transcription factor TFIIF complex beta subunit Tfg2 (predicted)
[Schizosaccharomyces pombe]
Length = 307
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 71/247 (28%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL Q VWLVK+PK++ +KW +P + +A L VR + + L L +
Sbjct: 22 DLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRVKNDE--IQLLLQNS----- 73
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P +PK + L +++N+ V + Y+ + + +S L+ G + + P
Sbjct: 74 PENADVPKIYNL--RVMNKF---VRNSYVFRESETSSSMKSTALV--GTVAHECNVSPVI 126
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLD--------------------KIVQNYKPVS---- 182
+ Y ++ + AS P R+V+ +D ++N KP +
Sbjct: 127 NDDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRSRSTTSFIRNVKPRTGEGL 186
Query: 183 -------------------NHKHLT-------------YLKEILKEVCNYNLKNPHKNMW 210
++++ T YLKE+L + N + P+ +
Sbjct: 187 KNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKY 246
Query: 211 ELKPEYR 217
LKPEY+
Sbjct: 247 SLKPEYK 253
>gi|449521623|ref|XP_004167829.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 190
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEK 224
Y+KEILK++C YN K H+ +ELKPEYR E+ K
Sbjct: 153 YMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK 188
>gi|402225030|gb|EJU05092.1| hypothetical protein DACRYDRAFT_98779 [Dacryopinax sp. DJM-731 SS1]
Length = 332
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 23 QPIVNLDLTQASRGVWLVKVPKYVANKWEKVPG-NIEAGKLKIVRNP---GQKPVVSLSL 78
+P +D + VW+VK+PK++ KW + ++ G L++ P G + +V L L
Sbjct: 38 EPDEEMDAAEGEEKVWMVKLPKFLMEKWTAIEQEDVVLGTLRVYHAPDPNGNQRLV-LRL 96
Query: 79 SEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQ 138
E T + +PK + L +Q + V + + + I + LEGKIV
Sbjct: 97 PEMTDPAVYDITTLPKQYSLKMQRKTVENEFVMASKMKERERNIISTK-----LEGKIVH 151
Query: 139 KLECRPYADSCYMKLKLDSIIKASQPLRQVKHLD 172
P D+ Y L +A+ P RQ K L+
Sbjct: 152 DCHAFPIMDASYTSLVASRHREANAPKRQTKVLE 185
>gi|406601241|emb|CCH47093.1| Transcription initiation factor IIF subunit beta [Wickerhamomyces
ciferrii]
Length = 424
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 7 EKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEA---GKLK 63
E + + D+ + + +N++L R +WLV++P+++ KW++ + GK+K
Sbjct: 47 ENEEVIDSNDITQDNNRIDLNMNLDNGERKIWLVRLPRFLIEKWKESDNYFQGQDLGKIK 106
Query: 64 IVRN--PGQKPVVSLSLSEATMCVDPNEEKIPKDHRLDV 100
I +N + P + + L+E DPN E IP ++ L++
Sbjct: 107 IKQNNVNNKAPYLKMQLNEN----DPNFEDIPHNYELNM 141
>gi|45199020|ref|NP_986049.1| AFR502Cp [Ashbya gossypii ATCC 10895]
gi|44985095|gb|AAS53873.1| AFR502Cp [Ashbya gossypii ATCC 10895]
gi|374109280|gb|AEY98186.1| FAFR502Cp [Ashbya gossypii FDAG1]
Length = 407
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
++LDL+ + R +WLV++PK++A KW + P N+ +L +R + + L L+E
Sbjct: 57 LDLDLSTSDRRIWLVRLPKFLAEKW-RDPRNLNGQELGKIRINKRDQSIQLLLNE----- 110
Query: 86 DPNEEKIPKDHRLDVQIVNRQTLGVFSHYI 115
D +IP H D+++ +Q V + YI
Sbjct: 111 DKENAEIP--HEYDLELTKKQ---VQNEYI 135
>gi|217075038|gb|ACJ85879.1| unknown [Medicago truncatula]
gi|388492442|gb|AFK34287.1| unknown [Medicago truncatula]
Length = 262
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 96/262 (36%), Gaps = 94/262 (35%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
NL+ ++A R VWL+K P VA W+ P P Q LS+ +D
Sbjct: 15 NLETSKAERSVWLMKCPVAVAKSWQNHP-------------PSQ------PLSKVVFSID 55
Query: 87 PNEEKIPKDHRLDVQIVNRQT------------LGVFSHYIPPVNPDAIVPESEKLMLEG 134
P +P+D +Q + L +F ++P + + E +K+ +EG
Sbjct: 56 P---LLPEDDPAHLQFTMEMSGTEAVNMPKTYSLNMFKDFVP-MCIFSETSEGDKVAMEG 111
Query: 135 KIVQKLE--------------CRPYADSCYMKLKLDSII--------------------- 159
K+ K + CR +K + II
Sbjct: 112 KVEHKFDMKPRHENMDDYGKLCRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSN 171
Query: 160 ----KASQPLRQV---------KHLDKIVQNY---KPVSNHKHLT--------YLKEILK 195
K +QP++Q L+ I+ +P K L +LKEIL
Sbjct: 172 FKDKKRTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 231
Query: 196 EVCNYNLKNPHKNMWELKPEYR 217
E+C YN + ++ +ELKPEY+
Sbjct: 232 ELCVYNKRGANQGTYELKPEYK 253
>gi|357136669|ref|XP_003569926.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Brachypodium distachyon]
Length = 261
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 101/260 (38%), Gaps = 73/260 (28%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVS---LSLSEATM 83
+L+ +A R VWL+K P V+ W++ AG K P PVV+ LSL +
Sbjct: 7 HLETGRADRSVWLMKCPTIVSRAWQEASAASAAGGPK----PNPNPVVAKVILSLDPLSS 62
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESE--KLMLEGKIVQKLE 141
DP + K+ + +L +F ++P ++ ES KL EGK+ K +
Sbjct: 63 DDDPAQFKMEMAQTDNGNKPKSYSLNMFKDFVPM----SVFSESNQGKLACEGKVEYKFD 118
Query: 142 CRP-------YADSCYMKLKLDSIIK-------------ASQPLRQVKHLDKIVQNYK-- 179
P YA C + + S+IK +PL + L ++ K
Sbjct: 119 MEPHRENLSDYAKLCRERTE-KSMIKTRKVHVLEKDNGMGMRPLLNIISLTPGLKEKKKS 177
Query: 180 -----------------------------PVSNHKHLT--------YLKEILKEVCNYNL 202
P + KHL +LKEI+ ++C YN
Sbjct: 178 IPAKVSDMKRTRRDRGELEIILFKLFERQPNWSLKHLMQETDQPEQFLKEIMNDLCVYNK 237
Query: 203 KNPHKNMWELKPEYRCYKEE 222
+ P++ ELKPEY+ E+
Sbjct: 238 RGPNQGTHELKPEYKKSAED 257
>gi|403168797|ref|XP_003328399.2| hypothetical protein PGTG_09693 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167664|gb|EFP83980.2| hypothetical protein PGTG_09693 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 357
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 36/193 (18%)
Query: 37 VWLVKVPKYVANKWEK----VPGNIEAGKLKIVR--NPGQKPVVSLSLSEATMCVDPNEE 90
WLVK+PK+++ +W++ G E G +++ N G K + + L + P+
Sbjct: 36 TWLVKIPKFLSERWQQQAQISGGRTELGAMRVYEDDNSGGKRKIEILLEDL-----PDLP 90
Query: 91 KIPKDHRLDVQIVNRQTLGVFSHYIPP--------------------VNPDAIVPE-SEK 129
+PK ++LDV+ L VF P P + P+ + +
Sbjct: 91 PVPKQYKLDVRNAATVNLYVFDELAKPEPVASTSKPEPTESTSTDKFGRPRRVRPKVARR 150
Query: 130 LMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKH----LDKIVQNYKPVSNHK 185
L G I + + P D Y + KA+QP R +K L + + V+ H
Sbjct: 151 PKLSGTIAHECQVAPVLDDNYRAVMRARQQKAAQPKRTIKRVNQDLGTLNRMASGVTTHA 210
Query: 186 HLTYLKEILKEVC 198
+ + V
Sbjct: 211 QASKFAAFTRSVT 223
>gi|301107059|ref|XP_002902612.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098486|gb|EEY56538.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 243
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 58/237 (24%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
L L R V+L K+P + W+ V G+I+ K + L + + V+P
Sbjct: 11 LHLELEDREVYLAKIPTALGASWKNVQGSIKLEKKSV-----------LGRRKGMLTVNP 59
Query: 88 N--EEKIPKDHRLDV-------QIVNRQTLGVFSHYIPPVNPDAIVPESE---------- 128
+ E+ IP ++R+++ ++ + G + N I+ +
Sbjct: 60 STLEDDIPTEYRVEISETPLKLKVFSLDGSGRMAIEGTVKNSCTIMAQRNDQYSKMCKQR 119
Query: 129 --KLMLEGKIVQKLECRPYADSCYMKLKLDSII-KASQPLRQVKHLDKIVQNYKP----- 180
K M++ +IVQ LE P ++ ++ +A + K LDK + K
Sbjct: 120 LIKSMVKTRIVQPLEDLPRVKKARIQFTIEKPDPEAEEDDADAKLLDKSDKKIKMSKDEL 179
Query: 181 ---VSNH---------KHLTY--------LKEILKEVCNYNLKNPHKNMWELKPEYR 217
V +H K L Y LKE+LKE+C Y+ K P+K+ +ELKP+Y+
Sbjct: 180 KNLVFHHFEEREYWPLKELNYHCRQPESLLKEVLKEICVYHRKGPNKSCYELKPQYK 236
>gi|448514436|ref|XP_003867110.1| hypothetical protein CORT_0A12890 [Candida orthopsilosis Co 90-125]
gi|380351448|emb|CCG21672.1| hypothetical protein CORT_0A12890 [Candida orthopsilosis Co 90-125]
Length = 394
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKW---EKVPGNIEAGKLKIVRNPGQKPVVSLSLSEAT 82
++++L++ + VWLVK+PKY+ +KW E + + GK+KI ++P K V L L +
Sbjct: 59 LDMNLSRGDQKVWLVKLPKYLMDKWNDPESMKKGNQLGKVKIRKDPKGKLEVKLVLEK-- 116
Query: 83 MCVDPNEEKIPKDHRLDVQIVNRQTLGVFS 112
E IP+++ D++++N Q ++
Sbjct: 117 -----KEADIPREY--DIKMLNTQVRNSYA 139
>gi|50556122|ref|XP_505469.1| YALI0F15785p [Yarrowia lipolytica]
gi|49651339|emb|CAG78278.1| YALI0F15785p [Yarrowia lipolytica CLIB122]
Length = 366
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVP--GNIEAGKLKIVRN--PGQKPVVSLSLSEAT 82
+LD VWLV++PK++ +KW + N G++ I N PG+K VSL LS+
Sbjct: 58 DLDTAGLENRVWLVRLPKFLVDKWSHLDEHTNKRLGQVLIKENTAPGEKQKVSLRLSDT- 116
Query: 83 MCVDPNEEKIPKDHRLDV--QIVN 104
P +IP ++ LD+ ++VN
Sbjct: 117 ----PENSEIPHEYELDIVKEVVN 136
>gi|50406447|ref|XP_456634.1| DEHA2A07106p [Debaryomyces hansenii CBS767]
gi|49652298|emb|CAG84590.1| DEHA2A07106p [Debaryomyces hansenii CBS767]
Length = 403
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 16/97 (16%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVP--GNIEAGKLKIVR-----NPGQKPVVSLSL 78
++++LT + VWLVK+P+Y+A KW + + G++KI + N K V L L
Sbjct: 67 LDMNLTNGEQKVWLVKLPRYLAEKWSNIDELSGEQLGRVKIKQSGRNGNNSGKLQVKLVL 126
Query: 79 SEATMCVDPNEEKIPKDHRLDVQIVNRQTLG--VFSH 113
+E+ M NEE IP H D+ ++N Q VFS
Sbjct: 127 NESAM----NEE-IP--HEYDISMLNTQVRNSYVFSE 156
>gi|146420929|ref|XP_001486417.1| hypothetical protein PGUG_02088 [Meyerozyma guilliermondii ATCC
6260]
Length = 380
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPG--NIEAGKLKIVRNPGQKPVVSLSLSEATM 83
++++LT ++ +WLVK+P+Y+A+KW + E K+KI + P L +
Sbjct: 45 LDMNLTSGNKKIWLVKLPRYLASKWSDINALSGKELAKIKIRQG---SPANGGKLQVKLV 101
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQ 106
+D +++ IP H DV ++N Q
Sbjct: 102 LLDQSDDSIP--HEYDVPMLNTQ 122
>gi|212545717|ref|XP_002153012.1| transcription initiation factor iif, beta subunit [Talaromyces
marneffei ATCC 18224]
gi|210064532|gb|EEA18627.1| transcription initiation factor iif, beta subunit [Talaromyces
marneffei ATCC 18224]
Length = 364
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 47/188 (25%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD TQA + VWL ++P + W ++ + I+ G +++ +SL L+++
Sbjct: 40 DLDFTQAGQNVWLTRIPTDLWKHWSQLDDDEEIQIGTVRVEGEAHDIKRISLRLNDS--- 96
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLG-------VFSHYIPPVNP---DAIVPESEKLMLE- 133
PN + IPKD+ L Q V+ ++ +FS P + D + E+ ++ E
Sbjct: 97 --PNSKDIPKDYILQRQNVDPKSGSFAVQNSYIFSEKDLPGHKNKVDEMFGETRSMLYES 154
Query: 134 -----------------------------GKIVQKLECRPYADSCYMKLKLDSIIKASQP 164
GK+ + C P ++ Y ++ +KA +P
Sbjct: 155 MKREARKKATKRKWEPYVRKTIPKQTALVGKVADEFNCMPVENAEYQRISEAKALKALEP 214
Query: 165 LRQVKHLD 172
+V+ +D
Sbjct: 215 KEKVRLID 222
>gi|315040055|ref|XP_003169405.1| hypothetical protein MGYG_08309 [Arthroderma gypseum CBS 118893]
gi|311346095|gb|EFR05298.1| hypothetical protein MGYG_08309 [Arthroderma gypseum CBS 118893]
Length = 381
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T A + VWL +VP+ + +W K+ + I+ G +++ +P +SL L +
Sbjct: 41 DLDFTNAFQNVWLTRVPRTLWEQWSKLDDDEEIQIGTVRVEGDPTDIKRISLRLLDI--- 97
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 98 --PQNKGVPKDYNLRRQNVN 115
>gi|11289766|pir||T45044 hypothetical protein Y39B6B.r [imported] - Caenorhabditis elegans
Length = 221
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYK 220
++Y+KE+L+E+ YN PHK++W LKPEY YK
Sbjct: 182 VSYVKEVLQEIAVYNTAPPHKSLWCLKPEYCNYK 215
>gi|363748542|ref|XP_003644489.1| hypothetical protein Ecym_1446 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888121|gb|AET37672.1| hypothetical protein Ecym_1446 [Eremothecium cymbalariae
DBVPG#7215]
Length = 414
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
++LDL + R +WLV++PK+++ KW + P N+ +L ++ + + L L++
Sbjct: 59 LDLDLKDSDRRIWLVRLPKFLSEKW-RDPKNLNGQELGRIKINKKDQSIQLILND----- 112
Query: 86 DPNEEKIPKDHRLDVQIVNRQTLGVFSHYI 115
D + E+IP H D+++ +Q V + YI
Sbjct: 113 DKDNEEIP--HEYDLELTKKQ---VQNQYI 137
>gi|302507152|ref|XP_003015537.1| hypothetical protein ARB_05848 [Arthroderma benhamiae CBS 112371]
gi|291179105|gb|EFE34892.1| hypothetical protein ARB_05848 [Arthroderma benhamiae CBS 112371]
Length = 381
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T A + VWL ++P+ + +W K+ + I+ G +++ +P +SL L +
Sbjct: 41 DLDFTNAFQNVWLTRIPRTLWEQWSKLDDDEEIQIGTVRVEGDPTDIKRISLRLLDI--- 97
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 98 --PQNKGVPKDYNLRRQNVN 115
>gi|190346005|gb|EDK37990.2| hypothetical protein PGUG_02088 [Meyerozyma guilliermondii ATCC
6260]
Length = 380
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPG--NIEAGKLKIVRNP---GQKPVVSLSLSE 80
++++LT ++ +WLVK+P+Y+A+KW + E K+KI + G K V L LS
Sbjct: 45 LDMNLTSGNKKIWLVKLPRYLASKWSDINALSGKELAKIKIRQGSPANGGKLQVKLVLS- 103
Query: 81 ATMCVDPNEEKIPKDHRLDVQIVNRQ 106
D +++ IP H DV ++N Q
Sbjct: 104 -----DQSDDSIP--HEYDVPMLNTQ 122
>gi|327298045|ref|XP_003233716.1| transcription initiation factor iif [Trichophyton rubrum CBS
118892]
gi|326463894|gb|EGD89347.1| transcription initiation factor iif [Trichophyton rubrum CBS
118892]
Length = 381
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T A + VWL ++P+ + +W K+ + I+ G +++ +P +SL L +
Sbjct: 41 DLDFTNAFQNVWLTRIPRTLWEQWSKLDDDEEIQIGTVRVEGDPTDIKRISLRLLDI--- 97
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 98 --PQNKGVPKDYNLRRQNVN 115
>gi|326482640|gb|EGE06650.1| transcription initiation factor IIF subunit beta [Trichophyton
equinum CBS 127.97]
Length = 383
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T A + VWL ++P+ + +W K+ + I+ G +++ +P +SL L +
Sbjct: 43 DLDFTNAFQNVWLTRIPRTLWEQWSKLDDDEEIQIGTVRVEGDPTDIKRISLRLLDI--- 99
Query: 85 VDPNEEKIPKDHRLDVQIVN--RQTLGVFSHYI 115
P + +PKD+ L Q VN R V + ++
Sbjct: 100 --PQNKGVPKDYNLRRQNVNADRSAYAVQNTFV 130
>gi|296423716|ref|XP_002841399.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637637|emb|CAZ85590.1| unnamed protein product [Tuber melanosporum]
Length = 370
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEA--GKLKIVRNPGQKPVVSLSLSEATMC 84
+LD+++ + VWLVK+P +VA +W ++ N E G +K+ NP + LSL
Sbjct: 39 DLDMSKGDKAVWLVKLPSFVAERWNEIDDNEEIVLGVVKV--NPKDTSNLKLSLERNQA- 95
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLGVF 111
N ++IP ++ D++I N + F
Sbjct: 96 ---NGDEIPTEY--DLRITNMEVNNTF 117
>gi|326470092|gb|EGD94101.1| transcription initiation factor iif [Trichophyton tonsurans CBS
112818]
Length = 381
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T A + VWL ++P+ + +W K+ + I+ G +++ +P +SL L +
Sbjct: 41 DLDFTNAFQNVWLTRIPRTLWEQWSKLDDDEEIQIGTVRVEGDPTDIKRISLRLLDI--- 97
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 98 --PQNKGVPKDYNLRRQNVN 115
>gi|325179553|emb|CCA13951.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 330
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 26/30 (86%)
Query: 188 TYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
++LKE+LKE+C Y+ K P+K+ +ELKP+Y+
Sbjct: 257 SFLKEVLKEICVYHRKGPNKSCYELKPQYK 286
>gi|328767698|gb|EGF77747.1| hypothetical protein BATDEDRAFT_20656 [Batrachochytrium
dendrobatidis JAM81]
Length = 299
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 57/244 (23%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGK-LKIVR------NPGQKPVVSLSLSE 80
L VWLVKVP ++A KW ++ G AGK L VR G P V+L + +
Sbjct: 34 FSLDHQDNAVWLVKVPNFLAEKWMQI-GFTHAGKDLGQVRIDKESTMQGNNPKVTLHIPD 92
Query: 81 ATMCVD-PNEEKI------PKDHRLDVQIVNRQTLGVFS-----HYIPPVNPDAIVPESE 128
D P + PK+ + + + +G+ + P+ DA
Sbjct: 93 EPWSADLPKNYNLKFTNLAPKNEYVFTETSQGRAVGIAGIVQHEATVSPMVTDATHSAHY 152
Query: 129 KLMLEGKIV-------------------QKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
+ +++ + ++L +D+ L+ K+S+ L + +
Sbjct: 153 QRIMKKRTTTAATPSRVVKMIDENKTEHRRLMGSASSDTWNAGLEHIKQKKSSKSLDKRE 212
Query: 170 HLDK---------IVQNYKPVSNHKHL--------TYLKEILKEVCNYNLKNPHKNMWEL 212
+ + + Y P N K L +LKEIL EVC N + P+ M++L
Sbjct: 213 RMTRSDLLNVLFPLFSGY-PYWNFKGLVEQTKQPHAWLKEILAEVCILNKRGPYTGMYQL 271
Query: 213 KPEY 216
KPE+
Sbjct: 272 KPEF 275
>gi|325179554|emb|CCA13952.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 329
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 26/30 (86%)
Query: 188 TYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
++LKE+LKE+C Y+ K P+K+ +ELKP+Y+
Sbjct: 256 SFLKEVLKEICVYHRKGPNKSCYELKPQYK 285
>gi|303321147|ref|XP_003070568.1| Transcription initiation factor IIF, beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240110264|gb|EER28423.1| Transcription initiation factor IIF, beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035964|gb|EFW17904.1| transcription initiation factor iif [Coccidioides posadasii str.
Silveira]
Length = 382
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD A++ VWL ++PK + W K+ + I+ G +++ P +SL L +
Sbjct: 44 DLDFANAAQDVWLTRIPKILWENWSKLDDDEEIQIGTVRVEGPPTDIKRISLRLLDI--- 100
Query: 85 VDPNEEKIPKDHRLDVQIVN--RQTLGVFSHYI 115
P E +PKD+ L Q +N R V + +I
Sbjct: 101 --PQNEGVPKDYNLKRQNINADRTAYAVQNTFI 131
>gi|392866571|gb|EAS27802.2| transcription initiation factor iif [Coccidioides immitis RS]
Length = 382
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD A++ VWL ++PK + W K+ + I+ G +++ P +SL L +
Sbjct: 44 DLDFANAAQDVWLTRIPKILWENWSKLDDDEEIQIGTVRVEGPPTDIKRISLRLLDI--- 100
Query: 85 VDPNEEKIPKDHRLDVQIVN--RQTLGVFSHYI 115
P E +PKD+ L Q +N R V + +I
Sbjct: 101 --PQNEGVPKDYNLKRQNINADRTAYAVQNTFI 131
>gi|255715141|ref|XP_002553852.1| KLTH0E08646p [Lachancea thermotolerans]
gi|238935234|emb|CAR23415.1| KLTH0E08646p [Lachancea thermotolerans CBS 6340]
Length = 382
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVP--GNIEAGKLKIVRN 67
++LDLT + R VWLV++PK++A KW E GK++I +N
Sbjct: 43 LDLDLTNSGRQVWLVRLPKFLAEKWRHKSNLNGQELGKIRIDKN 86
>gi|388521215|gb|AFK48669.1| unknown [Lotus japonicus]
Length = 258
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 101/273 (36%), Gaps = 92/273 (33%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+ N++ ++A R VWL+K P VA W+ P S LS+ +
Sbjct: 7 VSNVETSKAERSVWLMKCPVVVAKSWQ-----------------NHHPSPSQPLSKVVLS 49
Query: 85 VDPNEEKIPKDHRLDVQIVNRQT------------LGVFSHYIPPVNPDAIVPESEKLML 132
+DP +P+D +Q T L +F ++P + + + K+ +
Sbjct: 50 LDP---LLPEDDPSHLQFTMEMTGSEAVNMPKTYALNMFKDFVP-MCVFSETSQGGKVAM 105
Query: 133 EGKIVQKLE--------------CRPYADSCYMKLKLDSII------------------- 159
EGK+ K + CR + +K + +I
Sbjct: 106 EGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVS 165
Query: 160 ------KASQPLRQV---------KHLDKIVQNY---KPVSNHKHLT--------YLKEI 193
K +QP++Q L+ I+ +P K L +LKEI
Sbjct: 166 SNSKDKKRTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 225
Query: 194 LKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
L E+C YN + ++ +ELKPEY+ E+ K E
Sbjct: 226 LNELCVYNKRGANQGTYELKPEYKKSVEDVKVE 258
>gi|342319205|gb|EGU11155.1| Transcription initiation factor IIF subunit beta [Rhodotorula
glutinis ATCC 204091]
Length = 409
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 177 NYKPVSNH--KHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYK 220
+++ +++H + TYL+E+L EV + K P+ NMW LKPE++ +
Sbjct: 297 SFRTLNDHLRQPQTYLREVLGEVAHLVPKGPYANMWALKPEFKGTQ 342
>gi|328874575|gb|EGG22940.1| TFIIF subunit [Dictyostelium fasciculatum]
Length = 243
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 90/249 (36%), Gaps = 87/249 (34%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
L+ A WLVKVPK++ + W + E GKL + +SL++S T +
Sbjct: 13 LNTDNAENQAWLVKVPKFLVDHWMSRGADAEIGKLYF-----KSSNLSLTISGTT---NE 64
Query: 88 NEEKIPKDHRLDVQIVNRQTLGVFSHYIPPV---NPDAIVPESEK--LMLEGKIVQKLE- 141
NEE F PV NP I E ++ L LEG + K +
Sbjct: 65 NEE--------------------FQLATTPVIESNPLKIFSEDKENALALEGSVGLKCDI 104
Query: 142 ------------CRPYADSCYMKLKLD--------SIIKASQPLR-QVKHLDKIVQNYKP 180
CR ++S K + SI K P++ V L +++ K
Sbjct: 105 RMNVDSKGYRELCRGRSESYNTKTRQSKTLEGHQTSIFKNHNPIKPTVSTLAAVMKTKKQ 164
Query: 181 VSNHKHLT--------------------------------YLKEILKEVCNYNLKNPHKN 208
+ + +LK++L+ +C N + PH+N
Sbjct: 165 EDKRERMAEDELVDLLFHLFEEKTYWDLKSLISRTEQPQAWLKQVLERICILNKRGPHRN 224
Query: 209 MWELKPEYR 217
+E+K EY+
Sbjct: 225 YYEIKSEYK 233
>gi|348681790|gb|EGZ21606.1| hypothetical protein PHYSODRAFT_354403 [Phytophthora sojae]
Length = 249
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 26/30 (86%)
Query: 188 TYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
++LKE+LKE+C Y+ K P+K+ +ELKP+Y+
Sbjct: 213 SFLKEVLKEICVYHRKGPNKSCYELKPQYK 242
>gi|115401544|ref|XP_001216360.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190301|gb|EAU32001.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 394
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 46/189 (24%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + A + VWL ++P+ + W K+ + I+ G ++I P VSL ++E
Sbjct: 41 DLDFSSAGQNVWLSRLPRSLWEYWSKLDDDEEIQIGTVRIEGPPNDIKRVSLRINERE-- 98
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLG-------VFSHYIPPVNPDAIVPESE--------- 128
+ + +PKD+ L Q +N + + VF+ P + + +V E
Sbjct: 99 ---DNQDLPKDYLLQRQTINNENISHSTQNTYVFTEKDIPGHENRMVVFGEARSALYESM 155
Query: 129 -----------------------KLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPL 165
+ L G + ++ C P + + +L ++A +P
Sbjct: 156 KRDARKRERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVENEEFQRLSEKKALEALKPK 215
Query: 166 RQVKHLDKI 174
R+ +DK+
Sbjct: 216 RETVFIDKV 224
>gi|344229087|gb|EGV60973.1| transcription initiation factor IIF, beta subunit [Candida tenuis
ATCC 10573]
gi|344229088|gb|EGV60974.1| hypothetical protein CANTEDRAFT_116016 [Candida tenuis ATCC 10573]
Length = 363
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 15/101 (14%)
Query: 20 ITKQPIVNLDLTQASRGVWLVKVPKYVANKWE--KVPGNIEAGKLKI---VRNPGQKPVV 74
+ K +++DLT ++ +WLVK+PKY+A KW+ + G + G++KI N +K V
Sbjct: 30 LEKGESLDMDLTNGNQKIWLVKLPKYLATKWQNPNLMGK-QLGRVKIRNTTANGHKKLEV 88
Query: 75 SLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLG--VFSH 113
L + ++T ++IP+++ D+ I+N Q VFS
Sbjct: 89 KLVVDDSTA-----NDEIPQEY--DISILNTQVRNSYVFSE 122
>gi|254585803|ref|XP_002498469.1| ZYRO0G11022p [Zygosaccharomyces rouxii]
gi|238941363|emb|CAR29536.1| ZYRO0G11022p [Zygosaccharomyces rouxii]
Length = 388
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
++LDL Q++R VWLV++P ++A KW + NI +L +R ++ S+ + +
Sbjct: 46 LDLDLNQSNRQVWLVRLPMFLAEKW-RDRNNIHGQQLGKIR-------INKDGSKIQLVL 97
Query: 86 DPNE-EKIPKDHRLDVQIVNR--QTLGVFSH-----YIPPVNPDAIVPESEKLMLEGK 135
D N+ + IP H+ D+++ + + VF+ Y V A PE +K + K
Sbjct: 98 DENDNDSIP--HQYDLELTKKVVENEFVFTEQNLRKYQQRVRELATDPEKQKQAFQRK 153
>gi|255723710|ref|XP_002546784.1| hypothetical protein CTRG_01089 [Candida tropicalis MYA-3404]
gi|240134675|gb|EER34229.1| hypothetical protein CTRG_01089 [Candida tropicalis MYA-3404]
Length = 391
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 12/84 (14%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKW---EKVPGNIEAGKLKIVRNPGQKPVVSLSLSEAT 82
++++L++ + VWLVK+P+Y+ ++W E + G + G +KI ++ K V L LS
Sbjct: 59 LDMNLSRGDQKVWLVKLPRYLMDEWSNKETMNGQ-QLGNVKIRKDSKGKLQVKLVLS--- 114
Query: 83 MCVDPNEEKIPKDHRLDVQIVNRQ 106
D + +KIP D+ D++++N Q
Sbjct: 115 ---DDSSDKIPHDY--DIKMLNTQ 133
>gi|302792232|ref|XP_002977882.1| transcription factor [Selaginella moellendorffii]
gi|300154585|gb|EFJ21220.1| transcription factor [Selaginella moellendorffii]
Length = 262
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+ +LKEIL ++C YN + ++ +ELKPEYR
Sbjct: 226 VAFLKEILNDLCTYNKRGTNQGTYELKPEYR 256
>gi|384254108|gb|EIE27582.1| winged helix DNA-binding domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 189
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRC 218
+LKE+L EV N + P+ N+WELK EYR
Sbjct: 148 WLKEVLGEVAVLNKRGPNANLWELKKEYRA 177
>gi|255587521|ref|XP_002534300.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223525544|gb|EEF28082.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 278
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LK+ILKE+C YN K ++ +ELKPEY+ EE
Sbjct: 241 FLKDILKELCVYNNKGTNQGSYELKPEYKRSTEE 274
>gi|403215585|emb|CCK70084.1| hypothetical protein KNAG_0D03370 [Kazachstania naganishii CBS
8797]
Length = 382
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNI---EAGKLKIVRNPGQKPVV 74
++LDL QA R +WLV++P ++A KW + N+ E GK++I ++ Q +V
Sbjct: 34 LDLDLNQAKRQIWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSQIKLV 84
>gi|354546980|emb|CCE43713.1| hypothetical protein CPAR2_213560 [Candida parapsilosis]
Length = 397
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKW---EKVPGNIEAGKLKIVRNPGQKPVVSLSLSEAT 82
++++L++ + VWLVK+PKY+ KW E + + G +KI ++P K V L L +
Sbjct: 61 LDMNLSRGDQKVWLVKLPKYLMEKWNDPESMKKGNQLGNVKIRKDPKGKLEVKLVLEKK- 119
Query: 83 MCVDPNEEKIPKDHRLDVQIVNRQTLGVFS 112
E IP+++ D++++N Q ++
Sbjct: 120 ------EADIPQEY--DIKMLNTQVRNSYA 141
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 188 TYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATADDDD 234
+YLKE L + K P+ + W LKPEYR ++ E+ +DDD
Sbjct: 329 SYLKESLDSIAILIKKGPYTSKWVLKPEYRKLRDAERAARLGLNDDD 375
>gi|219120488|ref|XP_002180981.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407697|gb|EEC47633.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 312
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 181 VSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYK 220
+ + K T L+E+L+++ +Y+ HKNMWEL+ E++ K
Sbjct: 273 MGSRKAETDLRELLRDIGDYHRSGDHKNMWELRSEFQQQK 312
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 19 KITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRN 67
++T + LD TQ + WL+++P+ +A W VP G+L+ +
Sbjct: 7 RVTAESYGALDTTQVTNECWLIRIPQKLAEVWNTVPEGTALGELEFTKG 55
>gi|156844255|ref|XP_001645191.1| hypothetical protein Kpol_1062p42 [Vanderwaltozyma polyspora DSM
70294]
gi|156115849|gb|EDO17333.1| hypothetical protein Kpol_1062p42 [Vanderwaltozyma polyspora DSM
70294]
Length = 408
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPG--NIEAGKLKIVRNPGQKPVV 74
++LDL+ SR VWLV++P ++A KW E GK+KI +N + +V
Sbjct: 48 LDLDLSSCSRQVWLVRLPMFLAEKWRDRSNLHGQELGKIKINQNGSKIKLV 98
>gi|225679339|gb|EEH17623.1| transcription initiation factor iif [Paracoccidioides brasiliensis
Pb03]
Length = 369
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + A + VWL ++PK + W ++ + ++ G +++ P VS+ L++
Sbjct: 47 DLDFSNAMQDVWLTRIPKMLWENWSRLEDDEEVQIGTIRVEGGPTDIKRVSMRLNDM--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +P+D+ L Q VN
Sbjct: 104 --PQMKGVPRDYNLRRQNVN 121
>gi|226291060|gb|EEH46488.1| transcription initiation factor iif [Paracoccidioides brasiliensis
Pb18]
Length = 369
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + A + VWL ++PK + W ++ + ++ G +++ P VS+ L++
Sbjct: 47 DLDFSNAMQDVWLTRIPKMLWENWSRLEDDEEVQIGTIRVEGGPTDIKRVSMRLNDM--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +P+D+ L Q VN
Sbjct: 104 --PQMKGVPRDYNLRRQNVN 121
>gi|295665530|ref|XP_002793316.1| transcription initiation factor iif [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278230|gb|EEH33796.1| transcription initiation factor iif [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 387
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + A + VWL ++PK + W ++ + ++ G +++ P VS+ L++
Sbjct: 47 DLDFSNAMQDVWLTRIPKMLWENWSRLEDDEEVQIGTIRVEGGPTDIKRVSMRLNDM--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +P+D+ L Q VN
Sbjct: 104 --PQMKGVPRDYNLRRQNVN 121
>gi|150863704|ref|XP_001382266.2| hypothetical protein PICST_81830 [Scheffersomyces stipitis CBS
6054]
gi|149384960|gb|ABN64237.2| RNA polymerase II transcription initiation factor TFIIF middle
subunit [Scheffersomyces stipitis CBS 6054]
Length = 402
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKWEKVP--GNIEAGKLKIVRNPG 69
++++LT + +WLVK+P+Y+A KW K + G +KI +N G
Sbjct: 61 TLDMNLTNGDQKIWLVKLPRYLAEKWAKTENLNGSQLGTVKIKKNSG 107
>gi|238483049|ref|XP_002372763.1| transcription initiation factor IIF subunit beta, putative
[Aspergillus flavus NRRL3357]
gi|220700813|gb|EED57151.1| transcription initiation factor IIF subunit beta, putative
[Aspergillus flavus NRRL3357]
Length = 374
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD T AS+ VWL ++P+ + W + + I+ G ++I VSL ++E
Sbjct: 41 DLDFTNASQSVWLSRIPRTLWEHWSNLDDDEEIQIGTVRIEGPLNDIKRVSLRINEREEN 100
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLGVFSH 113
D IPKD+ L Q +N T V SH
Sbjct: 101 RD-----IPKDYLLQRQTIN--TEHVSSH 122
>gi|356511855|ref|XP_003524637.1| PREDICTED: general transcription factor IIF subunit 2-like [Glycine
max]
Length = 252
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LK+ILK++C YN K ++ +ELKPEYR
Sbjct: 220 FLKDILKDLCVYNNKGTNQGTYELKPEYR 248
>gi|149248558|ref|XP_001528666.1| hypothetical protein LELG_01186 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448620|gb|EDK43008.1| hypothetical protein LELG_01186 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 403
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKL----KIVRNPGQKPVVSLSLSEA 81
++++L++ + VWLVK+PKY+ +W P NI++GKL KI ++ K V L L
Sbjct: 69 LDMNLSRGDQKVWLVKLPKYLMEQWSN-PENIKSGKLLGNVKIRKDNKGKLDVRLVL--- 124
Query: 82 TMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSH 113
D IP+++ D++++N Q ++
Sbjct: 125 ----DKKLPSIPQEY--DIKMLNTQVRNTYAF 150
>gi|401840264|gb|EJT43155.1| TFG2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 400
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL ++SR VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSSRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLVLNE 110
>gi|317106673|dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]
Length = 262
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATAD 231
+LKEIL E+C YN + ++ +ELKPEY+ + E+A AD
Sbjct: 225 FLKEILNELCVYNKRGTNQGTYELKPEYK-----KSAEDAGAD 262
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 34/158 (21%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSL--------SLS 79
L+ +A R VWL+K P VA W+ + ++ +P K V+SL S
Sbjct: 15 LETAKADRSVWLMKCPLVVAKSWQSHASSSDS-------HPVAKVVLSLDPLRSDDPSAL 67
Query: 80 EATMCVDPNE-EKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESE--KLMLEGKI 136
+ TM + NE IPK + +L +F ++P + E+ ++ +EGK+
Sbjct: 68 QFTMEMAGNEIGNIPKSY----------SLNMFKDFVPM----CVFSETSQGRVAMEGKV 113
Query: 137 VQKLECRPYADSC--YMKLKLDSIIKASQPLRQVKHLD 172
K + +P+ ++ Y +L + K+ RQ++ +D
Sbjct: 114 EHKFDMKPHEENIEEYGRLCRERTNKSMVKNRQIQVID 151
>gi|261197806|ref|XP_002625305.1| transcription initiation factor iif [Ajellomyces dermatitidis
SLH14081]
gi|239595268|gb|EEQ77849.1| transcription initiation factor iif [Ajellomyces dermatitidis
SLH14081]
gi|239607691|gb|EEQ84678.1| transcription initiation factor iif [Ajellomyces dermatitidis ER-3]
gi|327355621|gb|EGE84478.1| transcription initiation factor iif [Ajellomyces dermatitidis ATCC
18188]
Length = 387
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + + + VWL ++PK + W ++ + ++ G +++ P VS+ L++
Sbjct: 47 DLDFSNSMQDVWLTRIPKMLWENWSRLEDDEEVQIGTIRVEGGPTDIKRVSMRLNDT--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 104 --PQMKGVPKDYNLRRQNVN 121
>gi|367005961|ref|XP_003687712.1| hypothetical protein TPHA_0K01450 [Tetrapisispora phaffii CBS 4417]
gi|357526017|emb|CCE65278.1| hypothetical protein TPHA_0K01450 [Tetrapisispora phaffii CBS 4417]
Length = 403
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 13/82 (15%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPG--NIEAGKLKIVRNPGQKPVVSLSLSEATM 83
++LDL+++ R VWLV++P ++A KW + GK+KI +N + + L L+E
Sbjct: 55 LDLDLSRSKRQVWLVRLPMFLAEKWRDRTNLHGQDLGKIKINQNGSK---IKLILNEN-- 109
Query: 84 CVDPNEEKIPKDHRLDVQIVNR 105
+++ IP H D+++ +
Sbjct: 110 ----DDDSIP--HEYDIELTKK 125
>gi|367013210|ref|XP_003681105.1| hypothetical protein TDEL_0D03100 [Torulaspora delbrueckii]
gi|359748765|emb|CCE91894.1| hypothetical protein TDEL_0D03100 [Torulaspora delbrueckii]
Length = 399
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL++++R VWLV++P ++A KW + NI +L +R + L L+E
Sbjct: 48 LDLDLSKSNRQVWLVRLPMFLAEKW-RDRNNIHGQELGKIRINKDGSKIKLVLNE 101
>gi|344303297|gb|EGW33571.1| hypothetical protein SPAPADRAFT_60912 [Spathaspora passalidarum
NRRL Y-27907]
Length = 389
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKW---EKVPGNIEAGKLKIVRNPGQKPVVSLSLSEAT 82
++++LT ++ VWLVK+P+Y+ KW E++ G + G +KI ++ G + + L
Sbjct: 56 LDMNLTGGNQKVWLVKLPRYLMEKWQNQEEIDGK-QLGMVKIKKDTGSNGKLQVKL--VL 112
Query: 83 MCVDPNEEKIPKDHRLDVQIVNRQTLGVFS 112
+ N IP+++ D++I+N Q ++
Sbjct: 113 NNQENNMNDIPQEY--DIKILNTQVRNTYA 140
>gi|168039739|ref|XP_001772354.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676341|gb|EDQ62825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEE 223
+ +LKEIL ++C YN + ++ +ELKPEY+ ++EE
Sbjct: 228 VAFLKEILNDLCIYNKRGANQGTYELKPEYKRTEKEE 264
>gi|365760663|gb|EHN02368.1| Tfg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 400
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL ++SR VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSSRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLVLNE 110
>gi|240275599|gb|EER39113.1| transcription initiation factor iif [Ajellomyces capsulatus H143]
gi|325091431|gb|EGC44741.1| transcription initiation factor iif [Ajellomyces capsulatus H88]
Length = 387
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + + + VWL ++PK + W ++ + ++ G +++ P VS+ L++
Sbjct: 47 DLDFSNSMQDVWLTRIPKMLWENWSRLEDDEEVQIGSIRVEGGPTDIKRVSMRLNDI--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 104 --PQMKGVPKDYNLRRQNVN 121
>gi|241950553|ref|XP_002417999.1| ATP-dependent helicase, putative; transcription initiation factor
IIF, beta subunit, putative [Candida dubliniensis CD36]
gi|223641338|emb|CAX43298.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
Length = 383
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKW---EKVPGNIEAGKLKIVRNPGQKPVVSLSLSEA 81
++++L++ + VWLVK+PKY+ ++W E + G G +KI ++ K V L L
Sbjct: 50 TLDMNLSKGDQKVWLVKLPKYLMDEWSNPESMNGQ-HLGNVKIKKDARGKLQVKLVLD-- 106
Query: 82 TMCVDPNEEKIPKDHRLDVQIVNRQ 106
+ EKIPK++ D++++N Q
Sbjct: 107 ----NNKNEKIPKEY--DIRMLNTQ 125
>gi|296086049|emb|CBI31490.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LK++LK++C YN K ++ +ELKPEY+ EE
Sbjct: 263 FLKDLLKDLCVYNNKGTNQGTYELKPEYKRSGEE 296
>gi|255538806|ref|XP_002510468.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223551169|gb|EEF52655.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 257
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LKEIL E+C YN + ++ +ELKPEY+ E+
Sbjct: 220 FLKEILNELCVYNKRGTNQGTYELKPEYKKSAED 253
>gi|359492177|ref|XP_002279990.2| PREDICTED: transcription initiation factor IIF subunit beta [Vitis
vinifera]
Length = 260
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
+LKEIL E+C YN + ++ +ELKPEY+ E+ E
Sbjct: 223 FLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGAE 260
>gi|154283733|ref|XP_001542662.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410842|gb|EDN06230.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 369
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + + + VWL ++PK + W ++ + ++ G +++ P VS+ L++
Sbjct: 47 DLDFSNSMQDVWLTRIPKMLWENWSRLEDDEEVQIGSIRVEGGPTDIKRVSMRLNDI--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 104 --PQMKGVPKDYNLRRQNVN 121
>gi|326493564|dbj|BAJ85243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LKEIL ++C YN + P++ ELKPEY+ E+
Sbjct: 224 FLKEILNDLCMYNKRGPNQGTHELKPEYKKSSED 257
>gi|225449108|ref|XP_002274802.1| PREDICTED: general transcription factor IIF subunit 2 [Vitis
vinifera]
Length = 257
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LK++LK++C YN K ++ +ELKPEY+ EE
Sbjct: 220 FLKDLLKDLCVYNNKGTNQGTYELKPEYKRSGEE 253
>gi|302142579|emb|CBI19782.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKE 226
+LKEIL E+C YN + ++ +ELKPEY+ E+ E
Sbjct: 222 FLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGAE 259
>gi|224062059|ref|XP_002300734.1| predicted protein [Populus trichocarpa]
gi|222842460|gb|EEE80007.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LKEIL E+C YN + ++ +ELKPEY+ E+
Sbjct: 228 FLKEILNELCVYNKRGTNQGTYELKPEYKKTAED 261
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 27/155 (17%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
L+ ++A + VWL+K P VA W ++ S L++ + +DP
Sbjct: 17 LETSKADKAVWLMKCPVVVAKSW---------------KSHHTSSSDSAPLAKVVLSLDP 61
Query: 88 NEEKIPKDHRLDVQIVNRQT--------LGVFSHYIPPVNPDAIVPESEKLMLEGKIVQK 139
+ P + +++ +T L +F ++ P+ + P+ ++ +EGK+ K
Sbjct: 62 LQSDDPSAIQFTMEMARTETGNVPKSYSLNMFKDFV-PMGVFSETPQG-RVSMEGKVEHK 119
Query: 140 LECRPYADSC--YMKLKLDSIIKASQPLRQVKHLD 172
+ +P+ ++ Y KL D K+ RQ++ +D
Sbjct: 120 FDMKPHEENIEEYSKLCRDRTKKSMIKNRQIRVID 154
>gi|225561990|gb|EEH10270.1| transcription initiation factor iif [Ajellomyces capsulatus G186AR]
Length = 387
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + + + VWL ++PK + W ++ + ++ G +++ P VS+ L +
Sbjct: 47 DLDFSNSMQDVWLTRIPKMLWENWSRLEDDEEVQIGSIRVEGGPTDIKRVSMRLDDI--- 103
Query: 85 VDPNEEKIPKDHRLDVQIVN 104
P + +PKD+ L Q VN
Sbjct: 104 --PQMKGVPKDYNLRRQNVN 121
>gi|412985430|emb|CCO18876.1| predicted protein [Bathycoccus prasinos]
Length = 376
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWE----------------------KVPGNIEAGKLKIV 65
LD +A+ WLVKVP +V W+ ++ N E GK+++V
Sbjct: 106 LDTQRANHRAWLVKVPNFVDRAWKSFSDRRSKADNENDEDGMDIDAELNDNDELGKVRVV 165
Query: 66 RNPGQKPVVSLSLSEATMCVDPNEE-KIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIV 124
+P K V+ +EE +IP + + + + + VFS
Sbjct: 166 IDPFDKENKEAFAVTLNAAVNEDEEHEIPVKYIM-TENIEAPEIHVFSETREGTAAATSA 224
Query: 125 PESEKLMLEGKIVQKLECRP--YADSCYMKLKLDSIIKASQPLRQVKHL 171
+ + ++E K+ +KL+ RP +D+ Y ++ + + KA R V+ +
Sbjct: 225 MDVNEFIVEAKVHKKLDMRPKDASDAAYARVSKNRLEKAQSKSRFVQSV 273
>gi|357133058|ref|XP_003568145.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 2 [Brachypodium distachyon]
Length = 279
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LKEIL ++C YN + P++ ELKPEY+ E+
Sbjct: 242 FLKEILNDLCMYNKRGPNQGTHELKPEYKKSSED 275
>gi|357133056|ref|XP_003568144.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 1 [Brachypodium distachyon]
Length = 261
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LKEIL ++C YN + P++ ELKPEY+ E+
Sbjct: 224 FLKEILNDLCMYNKRGPNQGTHELKPEYKKSSED 257
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 28 LDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPG---QKPVVSLS-LSEATM 83
L+ +A R VWL+K P V+ W+ + G NP K V+SL LS A
Sbjct: 8 LETARADRSVWLMKCPPVVSQAWQGASASSGDG------NPNPVVAKVVLSLDPLSSAEP 61
Query: 84 CVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESE--KLMLEGKIVQKLE 141
+ E + + + + +L +F ++ P + E+ KL EGK+ K +
Sbjct: 62 SIKFKME-MAQTRDITCNLPKSYSLNMFKDFV----PMCVFSEANQGKLSCEGKVEHKFD 116
Query: 142 CRPYADSC--YMKLKLDSIIKASQPLRQVKHLD 172
P+ D+ Y KL + K+ R+V+ LD
Sbjct: 117 MEPHKDNLINYAKLCRERTQKSMVKTRKVQVLD 149
>gi|238881836|gb|EEQ45474.1| hypothetical protein CAWG_03802 [Candida albicans WO-1]
Length = 381
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEA---GKLKIVRNPGQKPVVSLSLSEA 81
++++L++ + VWLVK+PKY+ + W P ++ G +KI ++ K V L L
Sbjct: 50 TLDMNLSKGDQKVWLVKLPKYLMDDWSN-PDSMNGQQLGNVKIKKDARGKLQVKLLL--- 105
Query: 82 TMCVDPNEEKIPKDHRLDVQIVNRQ 106
D +KIPK++ D++++N Q
Sbjct: 106 ----DNKNDKIPKEY--DIKMLNTQ 124
>gi|170577620|ref|XP_001894076.1| hypothetical protein Bm1_13050 [Brugia malayi]
gi|158599506|gb|EDP37084.1| hypothetical protein Bm1_13050 [Brugia malayi]
Length = 71
Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVV 74
++D A RGVWLVKVP+Y++ W K G + G+L I G+ ++
Sbjct: 12 HVDTDCAKRGVWLVKVPRYLSEMWGKNVG-YDVGRLVITAANGKTDLI 58
>gi|353526286|sp|Q54KT7.2|T2FB_DICDI RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
Length = 241
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 155 LDSIIKASQPLRQVKHLD-KIVQNYKPV-SNHKHLTYLKEILKEVCNYNLKNPHKNMWEL 212
LD I A R KHLD K ++++ NH LK IL++VC N + P+ +++EL
Sbjct: 175 LDLIFSA---FRAEKHLDLKTLESFTEQPKNH-----LKTILEKVCILNKRGPYHHLYEL 226
Query: 213 KPEYR 217
KPE+R
Sbjct: 227 KPEFR 231
>gi|56785216|dbj|BAD82068.1| putative transcription initiation factor IIF beta subunit [Oryza
sativa Japonica Group]
Length = 277
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATA 230
+LKEIL ++C YN + P++ ELKPEY+ E+ +ATA
Sbjct: 238 FLKEILNDLCFYNKRGPNQGTHELKPEYKKSTED---ADATA 276
>gi|15222264|ref|NP_177683.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
gi|9369371|gb|AAF87120.1|AC006434_16 F10A5.27 [Arabidopsis thaliana]
gi|11692842|gb|AAG40024.1|AF324673_1 At1g75700 [Arabidopsis thaliana]
gi|11935195|gb|AAG42013.1|AF327423_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|12642908|gb|AAK00396.1|AF339714_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|39545896|gb|AAR28011.1| TFIIF-beta 2 [Arabidopsis thaliana]
gi|110741044|dbj|BAE98616.1| putative transcription initiation factor [Arabidopsis thaliana]
gi|332197607|gb|AEE35728.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
Length = 261
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEE 223
+LKEIL E+C YN + ++ +ELKPEY+ E++
Sbjct: 223 FLKEILNELCVYNKRGSNQGTYELKPEYKKSAEDD 257
>gi|307106872|gb|EFN55117.1| expressed protein, partial [Chlorella variabilis]
Length = 52
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEE 223
+LKE+L E+ N + P K++WELK EY+ E+
Sbjct: 11 HLKEVLGEIAVKNTRGPFKDLWELKKEYKATGAED 45
>gi|391864707|gb|EIT74001.1| hypothetical protein Ao3042_10034 [Aspergillus oryzae 3.042]
Length = 374
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + AS+ VWL ++P+ + W + + I+ G ++I VSL ++E
Sbjct: 41 DLDFSNASQSVWLSRIPRTLWEHWSNLDDDEEIQIGTVRIEGPLNDIKRVSLRINEREEN 100
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLGVFSH 113
D IPKD+ L Q +N T V SH
Sbjct: 101 RD-----IPKDYLLQRQTIN--TEHVSSH 122
>gi|317139615|ref|XP_001817641.2| transcription initiation factor iif, beta subunit [Aspergillus
oryzae RIB40]
Length = 374
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMC 84
+LD + AS+ VWL ++P+ + W + + I+ G ++I VSL ++E
Sbjct: 41 DLDFSNASQSVWLSRIPRTLWEHWSNLDDDEEIQIGTVRIEGPLNDIKRVSLRINEREEN 100
Query: 85 VDPNEEKIPKDHRLDVQIVNRQTLGVFSH 113
D IPKD+ L Q +N T V SH
Sbjct: 101 RD-----IPKDYLLQRQTIN--TEHVSSH 122
>gi|156062600|ref|XP_001597222.1| hypothetical protein SS1G_01416 [Sclerotinia sclerotiorum 1980]
gi|154696752|gb|EDN96490.1| hypothetical protein SS1G_01416 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 363
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 33 ASRGVWLVKVPKYVANKWEKVPGNI-EAGKLKIVRNPGQKPVVSLSLSEATMCVDPN--- 88
A + +WL +VPKYV + WE + G++ E ++ +RN ++ +M + N
Sbjct: 39 AFQKLWLGRVPKYVWDAWEGLGGDLDEEIQIGTIRNCRERMPDGTVKDSYSMLLSSNLAQ 98
Query: 89 EEKIPKDHRLDVQIVNRQTLGVFSH 113
+ +PK++ LD+ N + +FS
Sbjct: 99 HQTVPKEYNLDITNENVKNTFIFSE 123
>gi|115464811|ref|NP_001056005.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|48475207|gb|AAT44276.1| putative transcription initiation factor [Oryza sativa Japonica
Group]
gi|113579556|dbj|BAF17919.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|215706385|dbj|BAG93241.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632183|gb|EEE64315.1| hypothetical protein OsJ_19152 [Oryza sativa Japonica Group]
Length = 259
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 222 FLKEILNDLCFYNKRGPNQGTHELKPEYK 250
>gi|224085774|ref|XP_002307692.1| predicted protein [Populus trichocarpa]
gi|118481065|gb|ABK92486.1| unknown [Populus trichocarpa]
gi|222857141|gb|EEE94688.1| predicted protein [Populus trichocarpa]
Length = 261
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL E+C YN + ++ +ELKPEY+
Sbjct: 224 FLKEILNELCVYNKRGTNQGTYELKPEYK 252
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
NL+ ++A + VWL+K P VA W K +P S L++ + +
Sbjct: 10 ANLETSKADKSVWLMKCPVVVAKSW------------KTHTSPSSSD--SAPLAKVVLSL 55
Query: 86 DPNEEKIPKDHRLDVQIVNRQ--------TLGVFSHYIPPVNPDAIVPESEKLMLEGKIV 137
DP + P + +++ + +L +F ++ P+ + P+ K+ +EGK+
Sbjct: 56 DPLQSDDPSALQFTMEMARTEAGNVPKSYSLNMFKDFV-PMCVFSETPQG-KVAMEGKVE 113
Query: 138 QKLECRPYADSC--YMKLKLDSIIKASQPLRQVK 169
K + +P+ + Y KL + K+ +RQ++
Sbjct: 114 HKFDMKPHEQNIEEYHKLCRERTKKSMVKIRQIQ 147
>gi|66807241|ref|XP_637343.1| TFIIF subunit [Dictyostelium discoideum AX4]
gi|60465764|gb|EAL63840.1| TFIIF subunit [Dictyostelium discoideum AX4]
Length = 248
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 155 LDSIIKASQPLRQVKHLD-KIVQNYKPV-SNHKHLTYLKEILKEVCNYNLKNPHKNMWEL 212
LD I A R KHLD K ++++ NH LK IL++VC N + P+ +++EL
Sbjct: 182 LDLIFSA---FRAEKHLDLKTLESFTEQPKNH-----LKTILEKVCILNKRGPYHHLYEL 233
Query: 213 KPEYR 217
KPE+R
Sbjct: 234 KPEFR 238
>gi|224032837|gb|ACN35494.1| unknown [Zea mays]
Length = 107
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 70 FLKEILNDLCVYNKRGPNQGTHELKPEYK 98
>gi|223993441|ref|XP_002286404.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977719|gb|EED96045.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 841
Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 191 KEILKEVCNYNLKNPHKNMWELKPEYR 217
+++L+++ +Y+ HKNMWELK EYR
Sbjct: 803 RDVLRDIAHYHRIGVHKNMWELKAEYR 829
>gi|125527873|gb|EAY75987.1| hypothetical protein OsI_03910 [Oryza sativa Indica Group]
gi|222619327|gb|EEE55459.1| hypothetical protein OsJ_03621 [Oryza sativa Japonica Group]
Length = 261
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATA 230
+LKEIL ++C YN + P++ ELKPEY+ E+ +ATA
Sbjct: 222 FLKEILNDLCFYNKRGPNQGTHELKPEYKKSTED---ADATA 260
>gi|388580343|gb|EIM20658.1| transcription initiation factor IIF, beta subunit [Wallemia sebi
CBS 633.66]
Length = 313
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 49/163 (30%)
Query: 37 VWLVKVPKYVANKWEKVPGN-IEAGKLKIVRNPGQKPVVSLSLSEATMCVDPNEE----- 90
VWL+K+PK++ +WE V + +E G L++ + K ++ PN++
Sbjct: 38 VWLIKIPKFLKERWENVDQDALELGTLRVFNDNSVKVIL------------PNQQYDQLT 85
Query: 91 -KIPKDHRLDV----------------QIVNRQ----TLGVFSHYIPPVNPDAIVPESEK 129
+P+++ L+V +I Q G F+ PP+N
Sbjct: 86 PDLPREYTLNVHKHTSDNSYVFAEKESEITQEQQNVANSGAFTKINPPIN---------- 135
Query: 130 LMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLD 172
L GKI + P + Y + ASQP R K L+
Sbjct: 136 TKLSGKIHHEGSLIPDLNDSYKHIMKQRQQSASQPKRTAKILE 178
>gi|219362667|ref|NP_001136767.1| hypothetical protein [Zea mays]
gi|194696976|gb|ACF82572.1| unknown [Zea mays]
gi|413949783|gb|AFW82432.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
gi|413949784|gb|AFW82433.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
Length = 272
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 235 FLKEILNDLCVYNKRGPNQGTHELKPEYK 263
>gi|297842295|ref|XP_002889029.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334870|gb|EFH65288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 260
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEE 223
+LKEIL E+C YN + ++ +ELKPEY+ E++
Sbjct: 222 FLKEILNELCVYNKRGSNQGTYELKPEYKKSAEDD 256
>gi|413945985|gb|AFW78634.1| hypothetical protein ZEAMMB73_145723 [Zea mays]
Length = 200
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 163 FLKEILNDLCVYNKRGPNQGTHELKPEYK 191
>gi|226506332|ref|NP_001149812.1| LOC100283439 [Zea mays]
gi|195634813|gb|ACG36875.1| ATP binding protein [Zea mays]
gi|219888615|gb|ACL54682.1| unknown [Zea mays]
gi|413945986|gb|AFW78635.1| ATP binding protein [Zea mays]
Length = 269
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 232 FLKEILNDLCVYNKRGPNQGTHELKPEYK 260
>gi|401625726|gb|EJS43721.1| tfg2p [Saccharomyces arboricola H-6]
Length = 399
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL +++R VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 56 LDLDLERSNRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLLLNE 109
>gi|410080956|ref|XP_003958058.1| hypothetical protein KAFR_0F03270 [Kazachstania africana CBS
2517]
gi|372464645|emb|CCF58923.1| hypothetical protein KAFR_0F03270 [Kazachstania africana CBS
2517]
Length = 389
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL++++R +WLV++P ++A KW + N+ +L +R + L L+E
Sbjct: 37 LDLDLSRSNRQIWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKIKLVLNE 90
>gi|68472727|ref|XP_719682.1| hypothetical protein CaO19.9659 [Candida albicans SC5314]
gi|68472984|ref|XP_719557.1| hypothetical protein CaO19.2111 [Candida albicans SC5314]
gi|46441379|gb|EAL00677.1| hypothetical protein CaO19.2111 [Candida albicans SC5314]
gi|46441509|gb|EAL00806.1| hypothetical protein CaO19.9659 [Candida albicans SC5314]
Length = 381
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 25 IVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEA---GKLKIVRNPGQKPVVSLSLSEA 81
++++L++ + VWLVK+PKY+ + W P ++ G +KI ++ K V L L
Sbjct: 50 TLDMNLSKGDQKVWLVKLPKYLMDDWSN-PDSMNGQQLGNVKIKKDARGKLQVKLLL--- 105
Query: 82 TMCVDPNEEKIPKDHRLDVQIVNRQ 106
D ++IPK++ D++++N Q
Sbjct: 106 ----DNKNDRIPKEY--DIKMLNTQ 124
>gi|242091041|ref|XP_002441353.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
gi|241946638|gb|EES19783.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
Length = 267
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 230 FLKEILNDLCVYNKRGPNQGTHELKPEYK 258
>gi|639703|gb|AAA61642.1| transcription initiation factor TFIIF middle subunit [Saccharomyces
cerevisiae]
Length = 400
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL +++R VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSNRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLLLNE 110
>gi|398365043|ref|NP_011519.3| Tfg2p [Saccharomyces cerevisiae S288c]
gi|1729818|sp|P41896.2|T2FB_YEAST RecName: Full=Transcription initiation factor IIF subunit beta;
AltName: Full=ATP-dependent helicase TFG2; AltName:
Full=TFIIF medium subunit; AltName: Full=TFIIF-beta;
AltName: Full=Transcription factor G 54 kDa subunit
gi|1322961|emb|CAA96988.1| TFG2 [Saccharomyces cerevisiae]
gi|51013193|gb|AAT92890.1| YGR005C [Saccharomyces cerevisiae]
gi|151943292|gb|EDN61605.1| transcription initiation factor TFIIF middle subunit [Saccharomyces
cerevisiae YJM789]
gi|190406965|gb|EDV10232.1| transcription initiation factor IIF beta subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207345246|gb|EDZ72129.1| YGR005Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273879|gb|EEU08800.1| Tfg2p [Saccharomyces cerevisiae JAY291]
gi|285812203|tpg|DAA08103.1| TPA: Tfg2p [Saccharomyces cerevisiae S288c]
gi|323309114|gb|EGA62342.1| Tfg2p [Saccharomyces cerevisiae FostersO]
gi|323333468|gb|EGA74862.1| Tfg2p [Saccharomyces cerevisiae AWRI796]
gi|349578225|dbj|GAA23391.1| K7_Tfg2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765618|gb|EHN07125.1| Tfg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299264|gb|EIW10358.1| Tfg2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 400
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL +++R VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSNRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLLLNE 110
>gi|323337655|gb|EGA78900.1| Tfg2p [Saccharomyces cerevisiae Vin13]
Length = 400
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL +++R VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSNRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLLLNE 110
>gi|259146508|emb|CAY79765.1| Tfg2p [Saccharomyces cerevisiae EC1118]
Length = 400
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL +++R VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSNRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLLLNE 110
>gi|218197080|gb|EEC79507.1| hypothetical protein OsI_20575 [Oryza sativa Indica Group]
Length = 259
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL ++C YN + P++ ELKPEY+
Sbjct: 222 FLKEILNDLCFYNKRRPNQGTHELKPEYK 250
>gi|50306097|ref|XP_453010.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642143|emb|CAH01861.1| KLLA0C18194p [Kluyveromyces lactis]
Length = 388
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
++LDL+ A + +WLV++PK++A W + +L VR + L L+E
Sbjct: 35 LDLDLSNARKKIWLVRLPKFLAENWRNRTA-LHGQELGKVRINNADHSIQLLLNE----- 88
Query: 86 DPNEEKIPKDHRLDVQIVNRQ 106
D + + IP H+ D+++ ++
Sbjct: 89 DEDNKDIP--HKYDLELTKKE 107
>gi|281210350|gb|EFA84517.1| TFIIF subunit [Polysphondylium pallidum PN500]
Length = 258
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 37 VWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDPNEEKIPKDH 96
WL+KVPK++A+ W G E GKL K +LSLS + N +P +
Sbjct: 22 AWLIKVPKHLADHWMTAGGGTEIGKLFF------KSSNNLSLSINFKDKENNNGYVPSE- 74
Query: 97 RLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEK--LMLEGKIVQKLECR-PYADSCYMKL 153
++Q+V +P NP I E + L EG I + + R + Y +L
Sbjct: 75 --ELQLVTTP--------LPDSNPIKIFSEDTENALSFEGSIGLRCDVRMDLSSPAYREL 124
Query: 154 KLDSIIKASQPLRQVKHLD 172
+ RQ K ++
Sbjct: 125 MKSRTTSYNTKTRQSKTIE 143
>gi|224109724|ref|XP_002315290.1| predicted protein [Populus trichocarpa]
gi|222864330|gb|EEF01461.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
++K++LK++C YN K ++ +ELKPEY+ EE
Sbjct: 229 FVKDMLKDLCVYNNKGSNQGSYELKPEYKKSNEE 262
>gi|334185929|ref|NP_190795.3| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
gi|332645403|gb|AEE78924.1| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
Length = 269
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LK++LK++C YN K ++ +ELKPEY+ +E
Sbjct: 236 FLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 269
>gi|121719914|ref|XP_001276655.1| transcription initiation factor iif, beta subunit [Aspergillus
clavatus NRRL 1]
gi|119404867|gb|EAW15229.1| transcription initiation factor iif, beta subunit [Aspergillus
clavatus NRRL 1]
Length = 374
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 30 LTQASRGVWLVKVPKYVANKWEKVPGN--IEAGKLKIVRNPGQKPVVSLSLSEATMCVDP 87
T A++ VWL ++P+ + W + + I+ G ++I P VSL ++E
Sbjct: 43 FTNAAQNVWLSRIPRTLWEHWASLDDDEEIQIGTMRIEGKPNDIKRVSLRINERE----- 97
Query: 88 NEEKIPKDHRLDVQIVNRQTL 108
+ IPKD+ L Q ++ T+
Sbjct: 98 DNHDIPKDYILQRQTIDTGTI 118
>gi|10045560|emb|CAC07918.1| putative protein [Arabidopsis thaliana]
Length = 376
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEE 222
+LK++LK++C YN K ++ +ELKPEY+ +E
Sbjct: 343 FLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 376
>gi|119180086|ref|XP_001241550.1| hypothetical protein CIMG_08713 [Coccidioides immitis RS]
Length = 370
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LD A++ VWL ++PK + W K+ + E Q +SL L +
Sbjct: 44 DLDFANAAQDVWLTRIPKILWENWSKLDDDEEI----------QIGTISLRLLDI----- 88
Query: 87 PNEEKIPKDHRLDVQIVN--RQTLGVFSHYI 115
P E +PKD+ L Q +N R V + +I
Sbjct: 89 PQNEGVPKDYNLKRQNINADRTAYAVQNTFI 119
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,828,194,631
Number of Sequences: 23463169
Number of extensions: 154138811
Number of successful extensions: 467400
Number of sequences better than 100.0: 311
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 466332
Number of HSP's gapped (non-prelim): 877
length of query: 235
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 97
effective length of database: 9,121,278,045
effective search space: 884763970365
effective search space used: 884763970365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)