BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15249
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41900|T2FB_DROME General transcription factor IIF subunit 2 OS=Drosophila
melanogaster GN=TfIIFbeta PE=2 SV=2
Length = 277
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 156/246 (63%), Gaps = 54/246 (21%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPP-----VNPDAIVPESEKLMLEGKIVQKLE 141
P EEKIP +H LDV V +QTLGVFSH P A P++EKL +EG+IVQKLE
Sbjct: 75 P-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH--------------- 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 193
Query: 187 ---------------------------------LTYLKEILKEVCNYNLKNPHKNMWELK 213
++YLKEILK+VC+YN+KNPHKNMWELK
Sbjct: 194 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELK 253
Query: 214 PEYRCY 219
EYR Y
Sbjct: 254 KEYRHY 259
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
MLF AFEKHQYYNIKDLVKIT QPI L
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPISYL 230
>sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2
PE=2 SV=1
Length = 249
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 131/255 (51%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A+ YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAANENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
++YLK+ILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQVEEKSD 249
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVK--GIHKNTWELKP 237
>sp|Q01750|T2FB_RAT General transcription factor IIF subunit 2 OS=Rattus norvegicus
GN=Gtf2f2 PE=2 SV=1
Length = 249
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+R + DK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQTEEKSD 249
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>sp|Q8R0A0|T2FB_MOUSE General transcription factor IIF subunit 2 OS=Mus musculus
GN=Gtf2f2 PE=1 SV=1
Length = 249
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 128/255 (50%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YMKLK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQTEEKSD 249
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVK--GIHKNTWELKP 237
>sp|P13984|T2FB_HUMAN General transcription factor IIF subunit 2 OS=Homo sapiens
GN=GTF2F2 PE=1 SV=2
Length = 249
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 127/255 (49%), Gaps = 68/255 (26%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G + VS +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANI 65
Query: 86 -----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIV-QNYKPVSNHKH------------- 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 187 -----------------------------------LTYLKEILKEVCNYNLKNPHKNMWE 211
+ YLKEILKE+ N+K HKN WE
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWE 234
Query: 212 LKPEYRCYKEEEKKE 226
LKPEYR Y+ EEK +
Sbjct: 235 LKPEYRHYQGEEKSD 249
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVK--GIHKNTWELKP 237
>sp|Q03123|T2FB_XENLA General transcription factor IIF subunit 2 OS=Xenopus laevis
GN=gtf2f2 PE=2 SV=1
Length = 264
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 129/258 (50%), Gaps = 60/258 (23%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDL A + G+WLVK+PKY+A +W K G E GKL+IV+N G K VS +L+E +
Sbjct: 8 LDLNGAKQNTGMWLVKLPKYLAQQWAKATGRGEVGKLRIVKNQG-KTEVSFTLNEELASI 66
Query: 86 DPNEEK-------IPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES-EKLMLEGKIV 137
K P++H +Q V QTL V + + + D +KL LEG +V
Sbjct: 67 QDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLALEGIVV 126
Query: 138 QKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH---------- 186
+ ECRP A YM++K I ++S+P RQ + L+K + NYKPVSNH++
Sbjct: 127 HRAECRPAASDNYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPVSNHQYNIEYEKKKKD 186
Query: 187 --------------------------------------LTYLKEILKEVCNYNLKNPHKN 208
+TYLKEIL+++ YN+K HKN
Sbjct: 187 DGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKN 246
Query: 209 MWELKPEYRCYKEEEKKE 226
WELKPEYR Y+ E+K +
Sbjct: 247 TWELKPEYRHYQGEDKSD 264
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP+ L G++ +K N WE P
Sbjct: 201 MLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTH--KNTWELKP 252
>sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfg2 PE=1 SV=1
Length = 307
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 71/247 (28%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL Q VWLVK+PK++ +KW +P + +A L VR + + L L +
Sbjct: 22 DLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRVKNDE--IQLLLQNS----- 73
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P +PK + L +++N+ V + Y+ + + +S L+ G + + P
Sbjct: 74 PENADVPKIYNL--RVMNKF---VRNSYVFRESETSSSMKSTALV--GTVAHECNVSPVI 126
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLD--------------------KIVQNYKPVS---- 182
+ Y ++ + AS P R+V+ +D ++N KP +
Sbjct: 127 NDDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRSRSTTSFIRNVKPRTGEGL 186
Query: 183 -------------------NHKHLT-------------YLKEILKEVCNYNLKNPHKNMW 210
++++ T YLKE+L + N + P+ +
Sbjct: 187 KNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKY 246
Query: 211 ELKPEYR 217
LKPEY+
Sbjct: 247 SLKPEYK 253
>sp|Q8JN08|DPOL_HBVH2 Protein P OS=Hepatitis B virus genotype H subtype adw4 (isolate
Nicaragua/1853Nic/1997) GN=P PE=3 SV=1
Length = 843
Score = 38.9 bits (89), Expect = 0.035, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 87 PNEEKIPK------DHR----LDVQIVNRQT---------LGVFSHYIPPVNPDAIVPES 127
P EE++P+ +HR L++Q+ N G++S +P NPD + P
Sbjct: 20 PLEEELPRLADEDLNHRVAEDLNLQLPNVSIPWTHKVGNFTGLYSSTVPVFNPDWLTPSF 79
Query: 128 EKLMLEGKIVQKLE--CRPYADSCYMKLKLDSIIKASQPLRQVKH--LDKIVQNYKP--V 181
+ L ++QK E RP + +LKL I+ A + K+ LDK ++ Y P V
Sbjct: 80 PDIHLHQDLIQKCEQFVRPLTKNEVRRLKL--IMPARFYPKATKYFPLDKGIKPYYPENV 137
Query: 182 SNH--KHLTYLKEILKEVCNYNLKNPH 206
NH K YL + K Y ++ H
Sbjct: 138 VNHYFKTTHYLHTLWKARILYKRESTH 164
>sp|Q54KT7|T2FB_DICDI General transcription factor IIF subunit 2 OS=Dictyostelium
discoideum GN=gtf2f2 PE=3 SV=2
Length = 241
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 155 LDSIIKASQPLRQVKHLD-KIVQNYKPV-SNHKHLTYLKEILKEVCNYNLKNPHKNMWEL 212
LD I A R KHLD K ++++ NH LK IL++VC N + P+ +++EL
Sbjct: 175 LDLIFSA---FRAEKHLDLKTLESFTEQPKNH-----LKTILEKVCILNKRGPYHHLYEL 226
Query: 213 KPEYR 217
KPE+R
Sbjct: 227 KPEFR 231
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKI 64
VN D A VWL+KVPK+++ W+K+ G E G++ I
Sbjct: 13 VNTD--NADNQVWLIKVPKFLSESWQKI-GQGEIGQIHI 48
>sp|P41896|T2FB_YEAST Transcription initiation factor IIF subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFG2 PE=1
SV=2
Length = 400
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSE 80
++LDL +++R VWLV++P ++A KW + N+ +L +R ++L L+E
Sbjct: 57 LDLDLERSNRQVWLVRLPMFLAEKW-RDRNNLHGQELGKIRINKDGSKITLLLNE 110
>sp|Q8JMY7|DPOL_HBVH1 Protein P OS=Hepatitis B virus genotype H (isolate United
States/LAS2523/2002) GN=P PE=3 SV=1
Length = 843
Score = 35.0 bits (79), Expect = 0.44, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 87 PNEEKIPK------DHR----LDVQIVNRQT---------LGVFSHYIPPVNPDAIVPES 127
P EE++P+ +HR L++Q+ N G++S IP NPD + P
Sbjct: 20 PLEEELPRLADEDLNHRVAEDLNLQLPNVSIPWTHKVGNFTGLYSSTIPVFNPDWLTPSF 79
Query: 128 EKLMLEGKIVQKLE--CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKP--VSN 183
+ L ++QK E P + +LKL + + + LDK ++ Y P V N
Sbjct: 80 PDIHLHQDLIQKCEQFVGPLTTNERRRLKLIMPARFYPKVTKYFPLDKGIKPYYPENVVN 139
Query: 184 HKHLT--YLKEILKEVCNYNLKNPH 206
H T YL + K Y ++ H
Sbjct: 140 HYFKTRHYLHTLWKAGILYKRESTH 164
>sp|Q9P032|NDUF4_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
4 OS=Homo sapiens GN=NDUFAF4 PE=1 SV=1
Length = 175
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 62 LKIVRNPGQKPVVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFS--HYIPPVN 119
LK V + PV SL + A C +P E ++PKDH D+ + G S + +N
Sbjct: 65 LKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEALTLLN 124
Query: 120 PDAIVPES---EKLMLEGKIVQK 139
+ PE+ EK+M E ++ QK
Sbjct: 125 NHKLFPETWTAEKIMQEYQLEQK 147
>sp|Q8JMZ7|DPOL_HBVH3 Protein P OS=Hepatitis B virus genotype H subtype adw4 (isolate
Nicaragua/2928Nic/1997) GN=P PE=3 SV=1
Length = 843
Score = 34.7 bits (78), Expect = 0.53, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 87 PNEEKIPK------DHR----LDVQIVNRQT---------LGVFSHYIPPVNPDAIVPES 127
P EE++P+ +HR L++Q+ N G++S +P NPD + P
Sbjct: 20 PLEEELPRLADEDLNHRVAEDLNLQLPNVSIPWTHKVGNFTGLYSSTVPVFNPDWLTPSF 79
Query: 128 EKLMLEGKIVQKLE--CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKP--VSN 183
+ L ++QK E P + +LKL + + + LDK ++ Y P V N
Sbjct: 80 PDIHLHQDLIQKCEQFVGPLTKNEVRRLKLIMPARFYPKVTKYFPLDKGIKPYYPEHVVN 139
Query: 184 HKHLT--YLKEILKEVCNYNLKNPH 206
H T YL + K Y ++ H
Sbjct: 140 HYFKTRHYLHTLWKAGILYKRESTH 164
>sp|O77203|PIAA_DICDI Protein pianissimo A OS=Dictyostelium discoideum GN=piaA PE=1 SV=1
Length = 1148
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 101 QIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIK 160
Q+ R +L H V+ + V ES+ + L I +K +C +C+ L + S I+
Sbjct: 949 QLDKRASLIAIGHIGSSVDGYSFVKESDTIKLLIGIAEKSQCLALRSTCFYALGMISCIE 1008
Query: 161 ASQPL 165
+QP+
Sbjct: 1009 EAQPI 1013
>sp|Q5R4R9|NDUF4_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
4 OS=Pongo abelii GN=NDUFAF4 PE=2 SV=1
Length = 175
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 62 LKIVRNPGQKPVVSLSLSEATMCVDPNEEKIPKDHRLDV 100
LK V + PV SL + A C +P E ++PKDH LD+
Sbjct: 65 LKDVYVDSRDPVPSLQVQAAETCQEPKEFRLPKDHHLDM 103
>sp|A4FUH5|NDUF4_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
4 OS=Bos taurus GN=NDUFAF4 PE=2 SV=1
Length = 175
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 62 LKIVRNPGQKPVVSLSLSEATMCVDPNEEKIPKDHRLDVQIV 103
LK V Q PV SL + +AT P E ++PKDH+ D+ V
Sbjct: 65 LKDVYVDSQDPVSSLQVKDATARQKPKEFRLPKDHQFDMMDV 106
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1
Length = 1493
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 173 KIVQNYKPVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEY 216
+I+Q ++ + +E+L+ +C ++ + + +W+LKPEY
Sbjct: 1449 EILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEY 1492
>sp|B4TRU7|LPXK_SALSV Tetraacyldisaccharide 4'-kinase OS=Salmonella schwarzengrund
(strain CVM19633) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLQHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|Q8ZQC2|LPXK_SALTY Tetraacyldisaccharide 4'-kinase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLQHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|A9N7U7|LPXK_SALPB Tetraacyldisaccharide 4'-kinase OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLQHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|B5FQ58|LPXK_SALDC Tetraacyldisaccharide 4'-kinase OS=Salmonella dublin (strain
CT_02021853) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLQHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|B5BBP3|LPXK_SALPK Tetraacyldisaccharide 4'-kinase OS=Salmonella paratyphi A (strain
AKU_12601) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|Q5PGH1|LPXK_SALPA Tetraacyldisaccharide 4'-kinase OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|Q57R13|LPXK_SALCH Tetraacyldisaccharide 4'-kinase OS=Salmonella choleraesuis (strain
SC-B67) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|B5F168|LPXK_SALA4 Tetraacyldisaccharide 4'-kinase OS=Salmonella agona (strain SL483)
GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDAHLSGEQPDKLLQHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|B5R8K2|LPXK_SALG2 Tetraacyldisaccharide 4'-kinase OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|B5QZB9|LPXK_SALEP Tetraacyldisaccharide 4'-kinase OS=Salmonella enteritidis PT4
(strain P125109) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|C0PXV2|LPXK_SALPC Tetraacyldisaccharide 4'-kinase OS=Salmonella paratyphi C (strain
RKS4594) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|B4TDQ2|LPXK_SALHS Tetraacyldisaccharide 4'-kinase OS=Salmonella heidelberg (strain
SL476) GN=lpxK PE=3 SV=1
Length = 325
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LSPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|Q8Z801|LPXK_SALTI Tetraacyldisaccharide 4'-kinase OS=Salmonella typhi GN=lpxK PE=3
SV=1
Length = 325
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 115 IPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
+ P + A+V E + L++ K ++CR +A+ + L +D+ + QP + ++H+ +
Sbjct: 266 LAPADVQALVGEGQTLVMTEK--DAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSL 323
Query: 175 VQ 176
V+
Sbjct: 324 VR 325
>sp|Q6MT14|SYR_MYCMS Arginine--tRNA ligase OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=argS PE=3 SV=1
Length = 554
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 103 VNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKAS 162
+N + VF HY+ +N DA PE+ C YA Y L I K +
Sbjct: 167 INVLAVTVFVHYLQALNIDAKKPEN--------------C--YAGDMYDDLAKIIINKYN 210
Query: 163 QPLRQVKHLDKIVQNYKPVSNHKHLT---YLKEILKEVCNYNLKNPH 206
+ +K+ D + +Y S K ++ +LK I +++ ++N+K H
Sbjct: 211 YQFKDIKYTDNKILDYNVHSLFKQISIDYFLKVIKQQLADFNVKIKH 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,824,161
Number of Sequences: 539616
Number of extensions: 3849048
Number of successful extensions: 12794
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 12738
Number of HSP's gapped (non-prelim): 71
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)