Query psy15249
Match_columns 235
No_of_seqs 122 out of 231
Neff 6.0
Searched_HMMs 29240
Date Sat Aug 17 01:11:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f3u_A Transcription initiatio 100.0 1E-33 3.4E-38 224.3 9.2 112 22-145 2-118 (118)
2 1bby_A RAP30; average structur 99.7 1.5E-17 5.1E-22 119.5 2.5 34 187-220 36-69 (69)
3 1bby_A RAP30; average structur 98.7 1.1E-09 3.9E-14 78.4 -1.3 51 1-53 12-62 (69)
4 2e5n_A RNA polymerase II elong 73.4 1.1 3.7E-05 33.9 1.0 27 187-216 46-72 (100)
5 2doa_A RNA polymerase II elong 73.4 1 3.4E-05 34.3 0.9 27 187-216 45-71 (104)
6 3nfg_B DNA-directed RNA polyme 25.7 12 0.00043 29.0 -0.4 14 33-46 28-41 (123)
7 3pyi_B Spindle assembly abnorm 12.8 1E+02 0.0035 24.4 2.2 52 71-158 33-84 (170)
8 2jwy_A Uncharacterized lipopro 12.8 1.1E+02 0.0038 24.8 2.4 41 32-80 40-86 (168)
9 1z8m_A Conserved hypothetical 9.2 1.1E+02 0.0038 20.5 1.2 14 204-217 51-66 (88)
10 3jsr_A ALL0216 protein; struct 8.8 1.2E+02 0.0041 23.3 1.2 21 27-47 32-52 (119)
No 1
>1f3u_A Transcription initiation factor IIF, beta subunit; general transcription initiation and elongation factor, RNA polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Probab=100.00 E-value=1e-33 Score=224.28 Aligned_cols=112 Identities=39% Similarity=0.687 Sum_probs=101.2
Q ss_pred cCCcccccccccccceeeccccHHHHhhhhCCCCCccceeEEEecCCCCCceEEEEeCCccccCCC----C-CCCCCCCc
Q psy15249 22 KQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVDP----N-EEKIPKDH 96 (235)
Q Consensus 22 ~~~~~~L~~~~~~~~vWLVKVPk~L~e~W~~~~~~~~lG~lri~~~~g~~~~v~l~L~~~~~~~~~----~-~~~iPkey 96 (235)
++++++|++++++++|||||||+|||++|++++++++||+|||++++| +.+|+|+|++.+.++.. . ...||++|
T Consensus 2 ~~~~~dld~~~~~~~VWLvKvPk~L~e~W~~~~~~~~vGkvri~~~~g-~~~v~l~L~~~~~~~~~~~~~~~~~~iPkeY 80 (118)
T 1f3u_A 2 ERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANIHDIGGKPASVSAPREH 80 (118)
T ss_dssp CTTBEECHHHHTTCEEEEEEEEHHHHHHHTTCCTTCEEEEEEEEEETT-EEEEEEEECHHHHTCCCTTCCCSTTCSCCEE
T ss_pred CcccccccccCCCceEEEEECCHHHHHHHHhCCCCCceEEEEEecCCC-ceeEEEEeChhHhhhccccccccccCCChhc
Confidence 568899999999999999999999999999999889999999998766 78999999987754331 1 46899999
Q ss_pred eeeeeeeCCeeEEEeeecCCCCCCCCCCCCccceeEEEEEeeeEEEeec
Q psy15249 97 RLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPY 145 (235)
Q Consensus 97 ~L~~~~~~~~n~~VFsE~~~p~~~~~~k~ip~~t~leG~V~~e~~~~P~ 145 (235)
+|+|++...+||+||||.++ ++++|||+|+|+|+|||.
T Consensus 81 ~l~~~~~~~~~~~VFSE~~~-----------~~~a~EG~V~~k~d~rP~ 118 (118)
T 1f3u_A 81 PFVLQSVGGQTLTVFTESSS-----------DKLSLEGIVVQRAECRPA 118 (118)
T ss_dssp EEEEECCTTSEEEEEEEETT-----------CCEEEEEEEEEEEEECCC
T ss_pred eEEeeccCCceeEEEeccCC-----------CcEEEEEEEEEEEEeecC
Confidence 99999988999999999998 899999999999999994
No 2
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=99.66 E-value=1.5e-17 Score=119.49 Aligned_cols=34 Identities=65% Similarity=1.059 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhhhhccCCCCcccccChhhhccc
Q psy15249 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYK 220 (235)
Q Consensus 187 e~yLKEiL~eIa~lnk~Gp~~~~weLKPEYk~~~ 220 (235)
++||||||++||+||++|||+|+||||||||+|+
T Consensus 36 ~~yLKeiL~~Ia~~~k~g~~~~~weLKpEyr~y~ 69 (69)
T 1bby_A 36 VVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQ 69 (69)
T ss_dssp HHHHHHHHHHHCCCBCCTTCCCBBCCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeeeCcHHHhccC
Confidence 8999999999999999999999999999999985
No 3
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=98.69 E-value=1.1e-09 Score=78.41 Aligned_cols=51 Identities=59% Similarity=0.796 Sum_probs=43.2
Q ss_pred ChhHhhhhhcccchhhhhhhhcCCcccccccccccceeeccccHHHHhhhhCC
Q psy15249 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKV 53 (235)
Q Consensus 1 ~~~~~f~~~~y~~~~~~~~~~~~~~~~L~~~~~~~~vWLVKVPk~L~e~W~~~ 53 (235)
+||++||+||||+|++|+.+|+||...|..+..+++++.-+-| ....|+--
T Consensus 12 ~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia~~~k~g~--~~~~weLK 62 (69)
T 1bby_A 12 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGI--HKNTWELK 62 (69)
T ss_dssp HHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCCBCCTT--CCCBBCCC
T ss_pred HHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHHHHHcCCC--CCCeeeCc
Confidence 5999999999999999999999999888888888888877766 36667543
No 4
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.37 E-value=1.1 Score=33.87 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhhhhccCCCCcccccChhh
Q psy15249 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEY 216 (235)
Q Consensus 187 e~yLKEiL~eIa~lnk~Gp~~~~weLKPEY 216 (235)
..-|-.||.+||.+|.+. |.|+||+++
T Consensus 46 ~~~l~~iL~eVa~~~~~~---~~y~Lk~~~ 72 (100)
T 2e5n_A 46 KNSLGAILQQVANLNSKD---LSYTLKDYV 72 (100)
T ss_dssp HHHHHHHHHHHEEEETTT---TEEEECSTH
T ss_pred HHHHHHHHHHHHhcCCcC---CeeehhHHH
Confidence 467889999999999654 899999873
No 5
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=73.37 E-value=1 Score=34.26 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhhhhccCCCCcccccChhh
Q psy15249 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEY 216 (235)
Q Consensus 187 e~yLKEiL~eIa~lnk~Gp~~~~weLKPEY 216 (235)
..=|..||.+||.+|.+. |.|+||+++
T Consensus 45 ~~~l~~iL~eVA~~~~~~---~~y~Lk~~~ 71 (104)
T 2doa_A 45 KDALDGLLQQVANMSAKD---GTCTLQDCM 71 (104)
T ss_dssp HHHHHHHHHHSSEECSSS---CEEECCSSG
T ss_pred HHHHHHHHHHHHhcCCcC---CeeeehHHH
Confidence 467899999999999654 899999863
No 6
>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B
Probab=25.68 E-value=12 Score=28.97 Aligned_cols=14 Identities=36% Similarity=0.942 Sum_probs=12.3
Q ss_pred cccceeeccccHHH
Q psy15249 33 ASRGVWLVKVPKYV 46 (235)
Q Consensus 33 ~~~~vWLVKVPk~L 46 (235)
.+.+|||+|.|+.|
T Consensus 28 ~~KevWlIkaP~~~ 41 (123)
T 3nfg_B 28 DNKELWLMKVPANI 41 (123)
T ss_dssp TTEEEEEEEEETTC
T ss_pred CCcEEEEEeCCCCC
Confidence 56899999999877
No 7
>3pyi_B Spindle assembly abnormal protein 6; beta-sandwich, dimer, alpha-beta protein, structural protein cytoplasmic, centriolar; HET: PG4 MES; 2.10A {Caenorhabditis elegans}
Probab=12.83 E-value=1e+02 Score=24.43 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=38.1
Q ss_pred CceEEEEeCCccccCCCCCCCCCCCceeeeeeeCCeeEEEeeecCCCCCCCCCCCCccceeEEEEEeeeEEEeecCCHHH
Q psy15249 71 KPVVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCY 150 (235)
Q Consensus 71 ~~~v~l~L~~~~~~~~~~~~~iPkey~L~~~~~~~~n~~VFsE~~~p~~~~~~k~ip~~t~leG~V~~e~~~~P~~~~~Y 150 (235)
+.+|.|.+.+...+ ..-++|..+.++.. ..+.|+|.+.-. +++|
T Consensus 33 kt~v~LKI~E~rne-----~~geKeL~feLSrd-dDp~FLy~lsL~------------------------------eEdy 76 (170)
T 3pyi_B 33 KTKVKLKISEQRNE-----TSGEKELKFEISRS-DDFEFLFSETLN------------------------------NEKY 76 (170)
T ss_dssp EEEEEEEEEEEECT-----TTCCEEEEEEEECT-TCTTCEEEEEEC------------------------------HHHH
T ss_pred hhhheeeehhhhcc-----ccCCceeEEEeccC-CChhhHHHHHhh------------------------------HHHH
Confidence 46888888865433 35789988888866 558888887543 7889
Q ss_pred HHHHHHHH
Q psy15249 151 MKLKLDSI 158 (235)
Q Consensus 151 ~~l~r~r~ 158 (235)
+.+++++-
T Consensus 77 QsLk~qq~ 84 (170)
T 3pyi_B 77 QILARDHD 84 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99888763
No 8
>2jwy_A Uncharacterized lipoprotein YAJI; structural genomics, GFT northeast S genomics consortium, NESG, membrane, palmitate, PSI-2; NMR {Escherichia coli}
Probab=12.77 E-value=1.1e+02 Score=24.76 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=25.3
Q ss_pred ccccceeeccccHHHHhhhhCCC--CCccceeEEEecC---C-CCCceEEEEeCC
Q psy15249 32 QASRGVWLVKVPKYVANKWEKVP--GNIEAGKLKIVRN---P-GQKPVVSLSLSE 80 (235)
Q Consensus 32 ~~~~~vWLVKVPk~L~e~W~~~~--~~~~lG~lri~~~---~-g~~~~v~l~L~~ 80 (235)
+..++||| +|. .+-+ -+++||+||++=. + ....+..|.+..
T Consensus 40 ~S~~GvyL--lPa------Antpa~L~SqiG~LrlsLs~i~peA~GtrA~L~I~~ 86 (168)
T 2jwy_A 40 KSSSGVYL--LPG------AKTPARLESQIGTLRMSLVNITPDADGTTLTLRIQG 86 (168)
T ss_dssp HCSSSEEE--CTT------TCCCEEEECSSCEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred cccCceEE--ecc------CCCceeeccccceEEEEEecccccCCCcEEEEEEeC
Confidence 45689999 672 1222 1679999998641 1 124577777764
No 9
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=9.16 E-value=1.1e+02 Score=20.52 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=8.2
Q ss_pred CCCCcccccC--hhhh
Q psy15249 204 NPHKNMWELK--PEYR 217 (235)
Q Consensus 204 Gp~~~~weLK--PEYk 217 (235)
|..+|.|++. ++||
T Consensus 51 G~~~g~~~~ri~~dyr 66 (88)
T 1z8m_A 51 GKWKPFRECHIKPDVL 66 (88)
T ss_dssp GGGTTSEECCSSTTCE
T ss_pred CCCCCeEEEEECCCEE
Confidence 5556677763 4554
No 10
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Probab=8.75 E-value=1.2e+02 Score=23.26 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=16.5
Q ss_pred cccccccccceeeccccHHHH
Q psy15249 27 NLDLTQASRGVWLVKVPKYVA 47 (235)
Q Consensus 27 ~L~~~~~~~~vWLVKVPk~L~ 47 (235)
.+...+.++..|||+=|+||.
T Consensus 32 ~Y~e~~KeiDFWlV~~PaFLe 52 (119)
T 3jsr_A 32 HYHEQEKEIDFWLVPQPAFLE 52 (119)
T ss_dssp HHHHTTCCCCEEEEESBGGGG
T ss_pred HHHhcCCCccEEEecChhhcC
Confidence 344456789999999999983
Done!