Your job contains 1 sequence.
>psy15249
MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAG
KLKIVRNPGQKPVVSLSLSEATMCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNP
DAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKP
VSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCYKEEEKKEEATADDDDD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15249
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010421 - symbol:TfIIFbeta "Transcription factor T... 515 2.3e-64 2
ZFIN|ZDB-GENE-050417-374 - symbol:gtf2f2b "general transc... 316 3.2e-39 2
UNIPROTKB|E1BXD0 - symbol:GTF2F2 "Uncharacterized protein... 294 3.1e-37 2
ZFIN|ZDB-GENE-040625-131 - symbol:gtf2f2a "general transc... 282 1.2e-35 2
UNIPROTKB|P13984 - symbol:GTF2F2 "General transcription f... 280 3.9e-35 2
UNIPROTKB|G3X7X9 - symbol:LOC100850122 "Uncharacterized p... 244 3.4e-32 2
WB|WBGene00012694 - symbol:Y39B6A.36 species:6239 "Caenor... 250 2.0e-30 2
UNIPROTKB|Q63489 - symbol:Gtf2f2 "RAP30" species:10116 "R... 297 2.5e-26 1
UNIPROTKB|Q2T9L9 - symbol:GTF2F2 "General transcription f... 295 4.0e-26 1
RGD|620772 - symbol:Gtf2f2 "general transcription factor ... 292 8.4e-26 1
MGI|MGI:1915955 - symbol:Gtf2f2 "general transcription fa... 289 1.8e-25 1
UNIPROTKB|E2RGQ0 - symbol:GTF2F2 "Uncharacterized protein... 283 7.6e-25 1
UNIPROTKB|E2RMA0 - symbol:E2RMA0 "Uncharacterized protein... 173 3.4e-13 1
DICTYBASE|DDB_G0287131 - symbol:gtf2f2 "TFIIF subunit" sp... 96 1.4e-08 3
POMBASE|SPBC1198.13c - symbol:tfg2 "transcription factor ... 117 2.3e-08 2
UNIPROTKB|I3LJ09 - symbol:GTF2F2 "Uncharacterized protein... 128 2.7e-08 1
TAIR|locus:2005674 - symbol:AT1G75510 species:3702 "Arabi... 98 3.4e-08 2
UNIPROTKB|I3LMR6 - symbol:GTF2F2 "Uncharacterized protein... 122 1.4e-07 1
ASPGD|ASPL0000051527 - symbol:AN1538 species:162425 "Emer... 79 5.4e-05 3
CGD|CAL0005275 - symbol:orf19.2111 species:5476 "Candida ... 96 0.00019 2
>FB|FBgn0010421 [details] [associations]
symbol:TfIIFbeta "Transcription factor TFIIFbeta"
species:7227 "Drosophila melanogaster" [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0001096 "TFIIF-class transcription factor
binding" evidence=IPI] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0005674 "transcription
factor TFIIF complex" evidence=ISS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 InterPro:IPR016640
Pfam:PF02270 PIRSF:PIRSF015849 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 GO:GO:0032968 GO:GO:0008026 GO:GO:0060261
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090
GeneTree:ENSGT00390000016051 OMA:IVQKLEC PANTHER:PTHR10445
EMBL:U25188 EMBL:U02461 EMBL:AY071514 PIR:S57336 RefSeq:NP_524305.2
UniGene:Dm.20167 ProteinModelPortal:P41900 SMR:P41900 IntAct:P41900
STRING:P41900 PaxDb:P41900 EnsemblMetazoa:FBtr0082310 GeneID:41290
KEGG:dme:Dmel_CG6538 CTD:41290 FlyBase:FBgn0010421
InParanoid:P41900 OrthoDB:EOG4FN30M PhylomeDB:P41900
GenomeRNAi:41290 NextBio:823133 Bgee:P41900 GermOnline:CG6538
Uniprot:P41900
Length = 277
Score = 515 (186.3 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 101/165 (61%), Positives = 126/165 (76%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL+ A RGVWLVKVPKY+A KWEK P N++ GKL+I + PGQK VSLSL+ A + +D
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPD-----AIVPESEKLMLEGKIVQKLE 141
P EEKIP +H LDV V +QTLGVFSH P + A P++EKL +EG+IVQKLE
Sbjct: 75 P-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLE 133
Query: 142 CRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKH 186
CRP AD+CYMKLKL+SI KAS+P R+V+ +DKIVQN+KPV +H H
Sbjct: 134 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAH 178
Score = 159 (61.0 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 169 KHLDKIVQNYKPVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
KH +++ ++N ++YLKEILK+VC+YN+KNPHKNMWELK EYR Y
Sbjct: 210 KHQYYNIKDLVKITNQP-ISYLKEILKDVCDYNMKNPHKNMWELKKEYRHY 259
Score = 119 (46.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 23/25 (92%), Positives = 23/25 (92%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPI 25
MLF AFEKHQYYNIKDLVKIT QPI
Sbjct: 203 MLFHAFEKHQYYNIKDLVKITNQPI 227
>ZFIN|ZDB-GENE-050417-374 [details] [associations]
symbol:gtf2f2b "general transcription factor IIF,
polypeptide 2b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849
ZFIN:ZDB-GENE-050417-374 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 KO:K03139 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 HOGENOM:HOG000294179
HOVERGEN:HBG001606 PANTHER:PTHR10445 EMBL:BC092783 IPI:IPI00498385
RefSeq:NP_001017832.1 UniGene:Dr.87723 ProteinModelPortal:Q568N8
SMR:Q568N8 STRING:Q568N8 GeneID:100148942 KEGG:dre:100148942
CTD:100148942 NextBio:20792568 Uniprot:Q568N8
Length = 256
Score = 316 (116.3 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 80/179 (44%), Positives = 106/179 (59%)
Query: 27 NLDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMC 84
++DLT+A + GVWLVKVPKY++ +W K G E GKLKI + G K VVS +L+E
Sbjct: 7 DVDLTRAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLKIGKAQG-KTVVSFNLNEELTV 65
Query: 85 VDPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQK 139
VD + EKI P++H +Q V QTL VF+ S+K+ LEG +VQ+
Sbjct: 66 VDCSGEKISSVRSPREHPFTMQTVGGQTLAVFTE------------SSDKIALEGMVVQR 113
Query: 140 LECRPYADSCYMKLKLDSIIKASQPLRQVKHLDK-IVQNYKPVSNHKH-LTYLKEILKE 196
ECRP YMKLK I ++++PLR + L+K I NYKPVSNH H L Y K +E
Sbjct: 114 AECRPAVSESYMKLKKLQIEESTKPLRFSQRLEKAITTNYKPVSNHSHNLEYEKRKKEE 172
Score = 126 (49.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQ+YNI+DLV ITKQP++ L GV+ + P + WE P
Sbjct: 186 MLFSAFEKHQFYNIRDLVDITKQPVIYLKEILREIGVYNSRGPH--KSTWELKP 237
Score = 119 (46.9 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
YLKEIL+E+ YN + PHK+ WELKPEYR Y
Sbjct: 212 YLKEILREIGVYNSRGPHKSTWELKPEYRHY 242
>UNIPROTKB|E1BXD0 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005674
"transcription factor TFIIF complex" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 InterPro:IPR016640
Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139 GO:GO:0006367
GO:GO:0008026 SUPFAM:SSF50916 GO:GO:0005674 CTD:2963
GeneTree:ENSGT00390000016051 OMA:IVQKLEC PANTHER:PTHR10445
EMBL:AADN02005449 EMBL:AADN02005448 IPI:IPI00583886
RefSeq:XP_417039.2 UniGene:Gga.28057 Ensembl:ENSGALT00000027426
GeneID:418843 KEGG:gga:418843 NextBio:20821979 Uniprot:E1BXD0
Length = 262
Score = 294 (108.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 74/177 (41%), Positives = 104/177 (58%)
Query: 28 LDLT--QASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT + + G+WLVKVPKY++ +W K G E GKL+I +N G+ V S +L+E +
Sbjct: 7 LDLTGVKQNTGMWLVKVPKYLSQQWSKASGRGEVGKLRIAKNQGRTEV-SFTLNEELASI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES---EKLMLEGKIV 137
P P++H +Q V QTL VF+ P+ ES +KL LEG +V
Sbjct: 66 SDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTESQPEE-KSESGSYDKLSLEGIVV 124
Query: 138 QKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH-LTYLKE 192
Q+ ECRP A YMKLK I ++S+P+R + LDK V NYKPV+NH++ + Y K+
Sbjct: 125 QRAECRPAASENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPVANHQYNIEYEKK 181
Score = 138 (53.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/54 (55%), Positives = 35/54 (64%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQYYNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 199 MLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH--KNTWELKP 250
Score = 122 (48.0 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
YLKEIL+E+ YN+K HKN WELKPEYR Y
Sbjct: 225 YLKEILREIGIYNVKGTHKNTWELKPEYRHY 255
>ZFIN|ZDB-GENE-040625-131 [details] [associations]
symbol:gtf2f2a "general transcription factor IIF,
polypeptide 2a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849
ZFIN:ZDB-GENE-040625-131 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026 SUPFAM:SSF50916
GO:GO:0005674 HOVERGEN:HBG001606 PANTHER:PTHR10445 HSSP:P13984
EMBL:BC071444 IPI:IPI00832374 UniGene:Dr.74541
ProteinModelPortal:Q6IQG2 SMR:Q6IQG2 STRING:Q6IQG2 PRIDE:Q6IQG2
InParanoid:Q6IQG2 NextBio:20818885 ArrayExpress:Q6IQG2 Bgee:Q6IQG2
Uniprot:Q6IQG2
Length = 265
Score = 282 (104.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 76/184 (41%), Positives = 103/184 (55%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
+DLT A + GVWLVKVPKY++ +W K G E GKL+I +N G K VS +L+E +
Sbjct: 7 VDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQG-KAEVSFTLNEELTTI 65
Query: 86 DPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPES------EKLMLEG 134
+ EK P++H +Q V QTL VF+ + DA S +K+ L G
Sbjct: 66 ETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQS-DAEASGSGTGSGPDKIALGG 124
Query: 135 KIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH-LTYLKE 192
+VQ+ ECRP YM+LK I + S+PLR + LDK V NYKPV+NH + L Y K
Sbjct: 125 VVVQRAECRPAVSESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPVANHAYNLDYEKR 184
Query: 193 ILKE 196
+E
Sbjct: 185 KKEE 188
Score = 134 (52.2 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 29/54 (53%), Positives = 35/54 (64%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVP 54
MLF+AFEKHQ+YNIKDLV ITKQP++ L G++ VK N WE P
Sbjct: 202 MLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH--KNTWELKP 253
Score = 119 (46.9 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
YLKEIL+++ YN+K HKN WELKPEYR Y
Sbjct: 228 YLKEILRDIGIYNVKGTHKNTWELKPEYRHY 258
>UNIPROTKB|P13984 [details] [associations]
symbol:GTF2F2 "General transcription factor IIF subunit 2"
species:9606 "Homo sapiens" [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_71 InterPro:IPR003196
InterPro:IPR011039 InterPro:IPR016640 Pfam:PF02270
PIRSF:PIRSF015849 GO:GO:0005524 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 EMBL:CH471075
Reactome:REACT_1675 GO:GO:0045944 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006368 KO:K03139 GO:GO:0006367
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0008026 GO:GO:0006370
GO:GO:0050434 Reactome:REACT_1892 EMBL:AL138693 SUPFAM:SSF50916
GO:GO:0005674 PDB:1F3U PDBsum:1F3U CTD:2963 eggNOG:COG5090
HOGENOM:HOG000294179 HOVERGEN:HBG001606 OMA:IVQKLEC
OrthoDB:EOG4RNB9C PANTHER:PTHR10445 EMBL:X16901 EMBL:X59745
EMBL:AK291545 EMBL:BT019525 EMBL:AL138963 EMBL:BC001771
IPI:IPI00477686 PIR:S06141 PIR:S18677 RefSeq:NP_004119.1
UniGene:Hs.654582 PDB:1BBY PDB:2BBY PDBsum:1BBY PDBsum:2BBY
ProteinModelPortal:P13984 SMR:P13984 DIP:DIP-41680N IntAct:P13984
MINT:MINT-193667 STRING:P13984 PhosphoSite:P13984 DMDM:464519
PaxDb:P13984 PeptideAtlas:P13984 PRIDE:P13984 DNASU:2963
Ensembl:ENST00000340473 GeneID:2963 KEGG:hsa:2963 UCSC:uc001uzw.3
GeneCards:GC13P045694 HGNC:HGNC:4653 HPA:HPA006912 MIM:189969
neXtProt:NX_P13984 PharmGKB:PA29039 InParanoid:P13984
EvolutionaryTrace:P13984 GenomeRNAi:2963 NextBio:11746 Bgee:P13984
CleanEx:HS_GTF2F2 Genevestigator:P13984 GermOnline:ENSG00000188342
Uniprot:P13984
Length = 249
Score = 280 (103.6 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 70/167 (41%), Positives = 97/167 (58%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I + G+ V S +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEV-SFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
ECRP A YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
Score = 135 (52.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 32/55 (58%), Positives = 36/55 (65%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK-VPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+V L GV VK + K N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHK---NTWELKP 237
Score = 116 (45.9 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+ YLKEILKE+ N+K HKN WELKPEYR Y
Sbjct: 210 VVYLKEILKEIGVQNVKGIHKNTWELKPEYRHY 242
>UNIPROTKB|G3X7X9 [details] [associations]
symbol:LOC100850122 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270 GO:GO:0005524
GO:GO:0003824 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367
EMBL:DAAA02009128 SUPFAM:SSF50916 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445 UniGene:Bt.102696
Ensembl:ENSBTAT00000048631 OMA:NEVECEL Uniprot:G3X7X9
Length = 257
Score = 244 (91.0 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 63/181 (34%), Positives = 100/181 (55%)
Query: 19 KITKQPI-VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLS 77
++ Q I +NL+ + ++ +WLVKVPKY++ +W + PG+ E GKLKI N G K +S +
Sbjct: 7 RLKPQSIPLNLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGEVGKLKIATNQG-KSEISFT 65
Query: 78 LSEATMCV-----DPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLML 132
L++ + P P +H+ +Q Q L V + + P ++ L
Sbjct: 66 LNKELTDIRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEP-----------DQFSL 114
Query: 133 EGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH-LTYL 190
+G +V + ECRP YM+LK I AS+P R V+ L+K+V NYKPV+NH++ + Y
Sbjct: 115 QGTVVHRGECRPAPSENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPVANHQYNIEYE 174
Query: 191 K 191
K
Sbjct: 175 K 175
Score = 132 (51.5 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 31/51 (60%), Positives = 33/51 (64%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVKVPKYVANKWE 51
+LFAAFEKHQYYNIKDLV IT QP+V L GV VK P N WE
Sbjct: 194 LLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPH--KNTWE 242
Score = 124 (48.7 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+ YLKEIL E+ N+K PHKN WELK EYRCY
Sbjct: 218 VVYLKEILNEIGVRNVKGPHKNTWELKEEYRCY 250
>WB|WBGene00012694 [details] [associations]
symbol:Y39B6A.36 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0000003 Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139
GO:GO:0006367 GO:GO:0008026 EMBL:AL132948 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 GeneTree:ENSGT00390000016051
HOGENOM:HOG000294179 PANTHER:PTHR10445 HSSP:P13984
RefSeq:NP_741661.1 ProteinModelPortal:Q8MYM8 SMR:Q8MYM8
STRING:Q8MYM8 PaxDb:Q8MYM8 EnsemblMetazoa:Y39B6A.36 GeneID:180243
KEGG:cel:CELE_Y39B6A.36 UCSC:Y39B6A.36 CTD:180243
WormBase:Y39B6A.36 InParanoid:Q8MYM8 OMA:IDNDRGV NextBio:908550
Uniprot:Q8MYM8
Length = 263
Score = 250 (93.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 62/172 (36%), Positives = 94/172 (54%)
Query: 21 TKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKI---VRNPGQKPVVSLS 77
TK+ ++D A R +WLVKVP+Y++ W+ GN+ GKL+I V K ++
Sbjct: 4 TKRYSNDVDCELAKRSIWLVKVPRYLSELWDANEGNV-VGKLQIGAQVELHTAKGLIHPK 62
Query: 78 LSEAT-----MCVDPNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLML 132
E T P +IP ++ + V QT+ V S + DA + ++ KL +
Sbjct: 63 PKEPTEGSSSTVTQPEASEIPTEYSFILHDVKSQTMSVLSEDKQGLGADAPI-KTGKLAI 121
Query: 133 EGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNH 184
EG+I++K ECRP A S YMK+KL I+K +QP + VK ++K +KPVS H
Sbjct: 122 EGRIIKKAECRPPATSKYMKMKLAHIVKNTQPKKTVKMIEKAAVKFKPVSVH 173
Score = 101 (40.6 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 187 LTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
++Y+KE+L+E+ YN PHK++W LKPEY Y
Sbjct: 224 VSYVKEVLQEIAVYNTAPPHKSLWCLKPEYCNY 256
Score = 76 (31.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 2 LFAAFEKHQYYNIKDLVKITKQPI 25
LF AFEKH +Y ++DL ++ +QP+
Sbjct: 201 LFKAFEKHSFYRLQDLQQLLQQPV 224
>UNIPROTKB|Q63489 [details] [associations]
symbol:Gtf2f2 "RAP30" species:10116 "Rattus norvegicus"
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 RGD:620772
GO:GO:0005524 GO:GO:0015630 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 GO:GO:0008026 EMBL:CH473951 SUPFAM:SSF50916
GO:GO:0005674 CTD:2963 GeneTree:ENSGT00390000016051
HOVERGEN:HBG001606 PANTHER:PTHR10445 HSSP:P13984 UniGene:Rn.11000
EMBL:BC091112 EMBL:D10665 IPI:IPI00393617 PIR:S35491
RefSeq:NP_112304.2 SMR:Q63489 STRING:Q63489
Ensembl:ENSRNOT00000044254 GeneID:81674 KEGG:rno:81674
InParanoid:Q63489 NextBio:615272 Genevestigator:Q63489
Uniprot:Q63489
Length = 249
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 73/167 (43%), Positives = 99/167 (59%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G+ V S +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQGRTEV-SFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
ECRP A YMKLK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK-VPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK + K N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK---NTWELKP 237
Score = 116 (45.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 41/111 (36%), Positives = 53/111 (47%)
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V ++Y P N + K +GK R AD ++ LD + A + Q
Sbjct: 149 VTTNYKPVANHQYNIEYERKKKEDGK-------RARADKQHV---LDMLFSAFEK-HQYY 197
Query: 170 HLDKIVQNYK-PVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+L +V K PV YLKEILKE+ N+K HKN WELKPEYR Y
Sbjct: 198 NLKDLVDITKQPVG------YLKEILKEIGIQNVKGIHKNTWELKPEYRHY 242
>UNIPROTKB|Q2T9L9 [details] [associations]
symbol:GTF2F2 "General transcription factor IIF subunit 2"
species:9913 "Bos taurus" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0005674 "transcription factor TFIIF complex"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
GO:GO:0015630 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 KO:K03139 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 EMBL:BC111360 IPI:IPI00687093
RefSeq:NP_001033153.1 UniGene:Bt.87914 ProteinModelPortal:Q2T9L9
SMR:Q2T9L9 STRING:Q2T9L9 Ensembl:ENSBTAT00000048870 GeneID:509259
KEGG:bta:509259 CTD:2963 eggNOG:COG5090
GeneTree:ENSGT00390000016051 HOGENOM:HOG000294179
HOVERGEN:HBG001606 InParanoid:Q2T9L9 OMA:IVQKLEC OrthoDB:EOG4RNB9C
NextBio:20868899 PANTHER:PTHR10445 Uniprot:Q2T9L9
Length = 249
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 72/167 (43%), Positives = 100/167 (59%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G+ V S +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQGRTEV-SFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
ECRP A+ YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAANENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
Score = 128 (50.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/55 (56%), Positives = 35/55 (63%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK-VPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK + K N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHK---NTWELKP 237
Score = 117 (46.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 41/111 (36%), Positives = 54/111 (48%)
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V ++Y P N + K +GK R AD ++ LD + A + Q
Sbjct: 149 VTTNYKPVANHQYNIEYERKKKEDGK-------RARADKQHV---LDMLFSAFEK-HQYY 197
Query: 170 HLDKIVQNYK-PVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+L +V K PVS YLK+ILKE+ N+K HKN WELKPEYR Y
Sbjct: 198 NLKDLVDITKQPVS------YLKDILKEIGVQNVKGIHKNTWELKPEYRHY 242
>RGD|620772 [details] [associations]
symbol:Gtf2f2 "general transcription factor IIF, polypeptide 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 RGD:620772
GO:GO:0005524 GO:GO:0015630 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 HOGENOM:HOG000294179
HOVERGEN:HBG001606 OrthoDB:EOG4RNB9C PANTHER:PTHR10445 EMBL:L01267
IPI:IPI00327034 UniGene:Rn.11000 ProteinModelPortal:Q01750
SMR:Q01750 STRING:Q01750 PhosphoSite:Q01750 PRIDE:Q01750
UCSC:RGD:620772 InParanoid:Q01750 ArrayExpress:Q01750
Genevestigator:Q01750 GermOnline:ENSRNOG00000029316 Uniprot:Q01750
Length = 249
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 72/167 (43%), Positives = 98/167 (58%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K PG E GKL+I +N G+ V S +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKNQGRTEV-SFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
ECRP A YMKLK I ++S+P+R + DK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQY 161
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK-VPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK + K N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK---NTWELKP 237
Score = 116 (45.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 41/111 (36%), Positives = 53/111 (47%)
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V ++Y P N + K +GK R AD ++ LD + A + Q
Sbjct: 149 VTTNYKPVANHQYNIEYERKKKEDGK-------RARADKQHV---LDMLFSAFEK-HQYY 197
Query: 170 HLDKIVQNYK-PVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+L +V K PV YLKEILKE+ N+K HKN WELKPEYR Y
Sbjct: 198 NLKDLVDITKQPVG------YLKEILKEIGIQNVKGIHKNTWELKPEYRHY 242
>MGI|MGI:1915955 [details] [associations]
symbol:Gtf2f2 "general transcription factor IIF, polypeptide
2" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005674 "transcription factor TFIIF complex"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 MGI:MGI:1915955
GO:GO:0005524 GO:GO:0015630 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139 GO:GO:0006367
GO:GO:0008026 SUPFAM:SSF50916 GO:GO:0005674 CTD:2963 eggNOG:COG5090
GeneTree:ENSGT00390000016051 HOGENOM:HOG000294179
HOVERGEN:HBG001606 OMA:IVQKLEC OrthoDB:EOG4RNB9C PANTHER:PTHR10445
EMBL:BC027173 IPI:IPI00135812 RefSeq:NP_081092.1 UniGene:Mm.20415
ProteinModelPortal:Q8R0A0 SMR:Q8R0A0 STRING:Q8R0A0
PhosphoSite:Q8R0A0 PaxDb:Q8R0A0 PRIDE:Q8R0A0
Ensembl:ENSMUST00000088922 GeneID:68705 KEGG:mmu:68705
InParanoid:Q8R0A0 NextBio:327734 Bgee:Q8R0A0 CleanEx:MM_GTF2F2
Genevestigator:Q8R0A0 GermOnline:ENSMUSG00000067995 Uniprot:Q8R0A0
Length = 249
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 72/167 (43%), Positives = 98/167 (58%)
Query: 28 LDLTQASR--GVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
LDLT A + GVWLVKVPKY++ +W K G E GKL+I +N G+ V S +L+E +
Sbjct: 7 LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKNQGRTEV-SFTLNEDLANI 65
Query: 86 D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
P P++H +Q V QTL VF+ S+KL LEG +VQ+
Sbjct: 66 HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRA 114
Query: 141 ECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
ECRP A YMKLK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 115 ECRPAASENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK-VPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK + K N WE P
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK---NTWELKP 237
Score = 116 (45.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 41/111 (36%), Positives = 53/111 (47%)
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V ++Y P N + K +GK R AD ++ LD + A + Q
Sbjct: 149 VTTNYKPVANHQYNIEYERKKKEDGK-------RARADKQHV---LDMLFSAFEK-HQYY 197
Query: 170 HLDKIVQNYK-PVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+L +V K PV YLKEILKE+ N+K HKN WELKPEYR Y
Sbjct: 198 NLKDLVDITKQPVG------YLKEILKEIGIQNVKGIHKNTWELKPEYRHY 242
>UNIPROTKB|E2RGQ0 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 GeneTree:ENSGT00390000016051
OMA:IVQKLEC PANTHER:PTHR10445 EMBL:AAEX03017756
Ensembl:ENSCAFT00000020476 Uniprot:E2RGQ0
Length = 245
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 69/173 (39%), Positives = 102/173 (58%)
Query: 20 ITKQPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLS 79
+ K+ ++L T+ + GVWLVKVPKY++ +W K PG E GKL+I +N G+ V S +L+
Sbjct: 1 MAKRGELDLTSTKQNTGVWLVKVPKYLSQQWAKDPGRGEVGKLRIAKNQGRTEV-SFTLN 59
Query: 80 EATMCVDPNEEKI-----PKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEG 134
E + K+ P++H +Q V QTL VF+ S+KL LEG
Sbjct: 60 EDLANIHDIGGKLASVSTPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEG 108
Query: 135 KIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
+VQ+ ECRP YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 109 IVVQRAECRPATSEKYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 161
Score = 120 (47.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/41 (63%), Positives = 29/41 (70%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK 41
MLF+AFEKHQYYN+KDLV ITKQP+ L GV VK
Sbjct: 186 MLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVK 226
>UNIPROTKB|E2RMA0 [details] [associations]
symbol:E2RMA0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270 GO:GO:0005524
GO:GO:0003824 GO:GO:0006367 SUPFAM:SSF50916 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445 EMBL:AAEX03013147
Ensembl:ENSCAFT00000007315 NextBio:20894777 Uniprot:E2RMA0
Length = 114
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 42/101 (41%), Positives = 59/101 (58%)
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P P++H +Q V QTL VF+ S+KL LEG +VQ+ ECRP A
Sbjct: 23 PASVSTPREHPFVLQSVGGQTLTVFTE-----------SSSDKLSLEGIVVQRAECRPAA 71
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLDKIVQ-NYKPVSNHKH 186
YM+LK I ++S+P+R + LDK+V NYKPV+NH++
Sbjct: 72 SENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQY 112
>DICTYBASE|DDB_G0287131 [details] [associations]
symbol:gtf2f2 "TFIIF subunit" species:44689
"Dictyostelium discoideum" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA;ISS] [GO:0005674
"transcription factor TFIIF complex" evidence=IEA;ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270
dictyBase:DDB_G0287131 GO:GO:0005524 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004386 KO:K03139 GO:GO:0006367 EMBL:AAFI02000098
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445
RefSeq:XP_637343.1 HSSP:P13984 STRING:Q54KT7
EnsemblProtists:DDB0231010 GeneID:8625965 KEGG:ddi:DDB_G0287131
ProtClustDB:CLSZ2728878 Uniprot:Q54KT7
Length = 241
Score = 96 (38.9 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 155 LDSIIKASQPLRQVKHLD-KIVQNY-KPVSNHKHLTYLKEILKEVCNYNLKNPHKNMWEL 212
LD I A R KHLD K ++++ + NH LK IL++VC N + P+ +++EL
Sbjct: 175 LDLIFSA---FRAEKHLDLKTLESFTEQPKNH-----LKTILEKVCILNKRGPYHHLYEL 226
Query: 213 KPEYR 217
KPE+R
Sbjct: 227 KPEFR 231
Score = 84 (34.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKI 64
VN D A VWL+KVPK+++ W+K+ G E G++ I
Sbjct: 13 VNTD--NADNQVWLIKVPKFLSESWQKI-GQGEIGQIHI 48
Score = 37 (18.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 73 VVSLSLSEATMCVDPNEEKIPKDHRLDV 100
V ++ +++ D +EK+P+D LD+
Sbjct: 151 VSTVGITQKKKSTD-KKEKLPEDEVLDL 177
>POMBASE|SPBC1198.13c [details] [associations]
symbol:tfg2 "transcription factor TFIIF complex beta
subunit Tfg2 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005674 "transcription factor TFIIF complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] InterPro:IPR003196
InterPro:IPR011039 Pfam:PF02270 PomBase:SPBC1198.13c GO:GO:0005524
GO:GO:0006355 GO:GO:0044732 GO:GO:0003677 EMBL:CU329671
Gene3D:1.10.10.10 InterPro:IPR011991 GenomeReviews:CU329671_GR
GO:GO:0004003 KO:K03139 GO:GO:0006367 GO:GO:0000991 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 PIR:T40615
RefSeq:NP_595082.1 ProteinModelPortal:O94424 IntAct:O94424
STRING:O94424 EnsemblFungi:SPBC1198.13c.1 GeneID:2539924
KEGG:spo:SPBC1198.13c HOGENOM:HOG000141627 OMA:WLVKIPK
OrthoDB:EOG4Q886J NextBio:20801067 Uniprot:O94424
Length = 307
Score = 117 (46.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 38/146 (26%), Positives = 70/146 (47%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LDL Q VWLVK+PK++ +KW +P + +A L VR + + L L +
Sbjct: 22 DLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRVKNDE--IQLLLQNS----- 73
Query: 87 PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYA 146
P +PK + L +++N+ V + Y+ + + +S L+ G + + P
Sbjct: 74 PENADVPKIYNL--RVMNKF---VRNSYVFRESETSSSMKSTALV--GTVAHECNVSPVI 126
Query: 147 DSCYMKLKLDSIIKASQPLRQVKHLD 172
+ Y ++ + AS P R+V+ +D
Sbjct: 127 NDDYRRVMQKRALAASAPKRKVQMID 152
Score = 68 (29.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
YLKE+L + N + P+ + LKPEY+
Sbjct: 225 YLKEVLDSIAILNKRGPYALKYSLKPEYK 253
>UNIPROTKB|I3LJ09 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006367 "transcription initiation from RNA polymerase
II promoter" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003196 Pfam:PF02270 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006367 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445
Ensembl:ENSSSCT00000022245 OMA:RRRDHIH Uniprot:I3LJ09
Length = 121
Score = 128 (50.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 1 MLFAAFEKHQYYNIKDLVKITKQPIVNLDLTQASRGVWLVK-VPKYVANKWEKVP 54
MLF+AFEKHQYYN+KDLV ITKQP+ L G+ VK + K N WE P
Sbjct: 58 MLFSAFEKHQYYNLKDLVDITKQPVSYLKEILKEIGIQNVKGIHK---NTWELKP 109
Score = 125 (49.1 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 43/111 (38%), Positives = 54/111 (48%)
Query: 110 VFSHYIPPVNPDAIVPESEKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVK 169
V ++Y P N + K +GK R AD Y+ LD + A + Q
Sbjct: 21 VTTNYKPVANHQYNIEYERKKKEDGK-------RARADKQYV---LDMLFSAFEK-HQYY 69
Query: 170 HLDKIVQNYK-PVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKPEYRCY 219
+L +V K PVS YLKEILKE+ N+K HKN WELKPEYR Y
Sbjct: 70 NLKDLVDITKQPVS------YLKEILKEIGIQNVKGIHKNTWELKPEYRHY 114
>TAIR|locus:2005674 [details] [associations]
symbol:AT1G75510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA;ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;RCA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA;ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003743 KO:K03139
GO:GO:0006367 GO:GO:0008026 EMBL:AC006434 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 HSSP:P13984
OMA:IDNDRGV EMBL:AF324673 EMBL:AF327423 EMBL:AF339714 EMBL:AY463609
EMBL:AK226474 IPI:IPI00532425 RefSeq:NP_177683.1 UniGene:At.15696
ProteinModelPortal:Q9LQZ4 SMR:Q9LQZ4 STRING:Q9LQZ4 PaxDb:Q9LQZ4
PRIDE:Q9LQZ4 EnsemblPlants:AT1G75510.1 GeneID:843887
KEGG:ath:AT1G75510 TAIR:At1g75510 HOGENOM:HOG000238322
InParanoid:Q9LQZ4 PhylomeDB:Q9LQZ4 ProtClustDB:CLSN2914241
ArrayExpress:Q9LQZ4 Genevestigator:Q9LQZ4 Uniprot:Q9LQZ4
Length = 261
Score = 98 (39.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 38/158 (24%), Positives = 70/158 (44%)
Query: 23 QPIVNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEAT 82
+ I NLD+ ++ R +WL+K P V W K I A + P ++ + E
Sbjct: 2 EDIHNLDIEKSDRSIWLMKCPVVVDKAWHK----IAASSSSSFASSDSPPDMAKIVRE-- 55
Query: 83 MCVDPNEEKIPKDHRL---DVQIVNRQ---TLGVFSHYIPPVNPDAIVPESEKLMLEGKI 136
VDP + P + ++ + N L +F+ ++P + + V + EGK+
Sbjct: 56 --VDPLRDDSPPEFKMYMVGAEYGNMPKCYALNMFTDFVP-MGGFSDVNQG-CAAAEGKV 111
Query: 137 VQKLECRPYADSC--YMKLKLDSIIKASQPLRQVKHLD 172
K + +PY ++ Y +L + KA RQ++ +D
Sbjct: 112 DHKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVID 149
Score = 87 (35.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+LKEIL E+C YN + ++ +ELKPEY+
Sbjct: 223 FLKEILNELCVYNKRGSNQGTYELKPEYK 251
>UNIPROTKB|I3LMR6 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR003196
InterPro:IPR011039 Pfam:PF02270 GO:GO:0005524 GO:GO:0003824
GO:GO:0015630 GO:GO:0006367 SUPFAM:SSF50916 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445 EMBL:FP565887
Ensembl:ENSSSCT00000023760 OMA:SIHDIGG Uniprot:I3LMR6
Length = 81
Score = 122 (48.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 42 VPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD-----PNEEKIPKDH 96
VPKY++ +W K PG E GKL+I +N G+ V S +L+E + P P++H
Sbjct: 1 VPKYLSQQWAKAPGRGEVGKLRIAKNQGRTEV-SFTLNEELANIHDIGGKPASVSAPREH 59
Query: 97 RLDVQIVNRQTLGVFS 112
+Q V QTL VF+
Sbjct: 60 PFVLQSVGGQTLTVFT 75
>ASPGD|ASPL0000051527 [details] [associations]
symbol:AN1538 species:162425 "Emericella nidulans"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
Pfam:PF02270 GO:GO:0005524 GO:GO:0003824 EMBL:BN001307
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AACD01000025
GO:GO:0003743 KO:K03139 GO:GO:0006367 SUPFAM:SSF50916 GO:GO:0005674
eggNOG:COG5090 PANTHER:PTHR10445 OMA:KTIPKKT RefSeq:XP_659142.1
ProteinModelPortal:Q5BD42 STRING:Q5BD42
EnsemblFungi:CADANIAT00008165 GeneID:2875661 KEGG:ani:AN1538.2
HOGENOM:HOG000158361 OrthoDB:EOG4J6W0H Uniprot:Q5BD42
Length = 357
Score = 79 (32.9 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 27 NLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCVD 86
+LD T A + +WL ++P+ + W K+ + E Q VSL L+E+ +
Sbjct: 41 DLDFTNADQSLWLSRIPRSLWEHWSKLDDDDEI----------QIGTVSLRLTES----E 86
Query: 87 PNEEKIPKDHRLDVQIVNRQTL 108
N + IPKD+ L Q +N + L
Sbjct: 87 ENRD-IPKDYILSRQTLNSENL 107
Score = 63 (27.2 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 128 EKLMLEGKIVQKLECRPYADSCYMKLKLDSIIKASQPLRQVKHLDKI 174
++ L G++ ++ C P + + L ++A +P R+VK++DK+
Sbjct: 166 KRTALVGQVKEEFNCLPVENEEFRILSEKKALEALKPRREVKYVDKM 212
Score = 52 (23.4 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYR 217
YLK+ L+ + + WELKPE R
Sbjct: 283 YLKQTLEMIAHLVKSGDFAMTWELKPEAR 311
>CGD|CAL0005275 [details] [associations]
symbol:orf19.2111 species:5476 "Candida albicans" [GO:0005674
"transcription factor TFIIF complex" evidence=IEA] [GO:0005816
"spindle pole body" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IEA] [GO:0000991 "core RNA polymerase II
binding transcription factor activity" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270 CGD:CAL0005275
GO:GO:0005524 GO:GO:0003824 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 EMBL:AACQ01000031 EMBL:AACQ01000030
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445
RefSeq:XP_719557.1 RefSeq:XP_719682.1 ProteinModelPortal:Q5ACV6
STRING:Q5ACV6 GeneID:3638721 GeneID:3638902 KEGG:cal:CaO19.2111
KEGG:cal:CaO19.9659 Uniprot:Q5ACV6
Length = 381
Score = 96 (38.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 26 VNLDLTQASRGVWLVKVPKYVANKWEKVPGNI---EAGKLKIVRNPGQKPVVSLSLSEAT 82
++++L++ + VWLVK+PKY+ + W P ++ + G +KI ++ K V L L
Sbjct: 51 LDMNLSKGDQKVWLVKLPKYLMDDWSN-PDSMNGQQLGNVKIKKDARGKLQVKLLL---- 105
Query: 83 MCVDPNEEKIPKDHRLDVQIVNRQ 106
D ++IPK++ D++++N Q
Sbjct: 106 ---DNKNDRIPKEY--DIKMLNTQ 124
Score = 58 (25.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 188 TYLKEILKEVCNYNLKNPHKNMWELKPEYR 217
+YLKE L+ + + P+ + + LK EYR
Sbjct: 316 SYLKESLESIATLIKRGPYTSKYTLKAEYR 345
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 219 0.00092 112 3 11 22 0.40 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 604 (64 KB)
Total size of DFA: 197 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.66u 0.13s 21.79t Elapsed: 00:00:01
Total cpu time: 21.66u 0.13s 21.79t Elapsed: 00:00:01
Start: Thu Aug 15 17:53:34 2013 End: Thu Aug 15 17:53:35 2013