RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15249
         (235 letters)



>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 118

 Score =  114 bits (286), Expect = 4e-33
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 17/124 (13%)

Query: 26  VNLDLTQASRGVWLVKVPKYVANKWEKVPGNIEAGKLKIVRNPGQKPVVSLSLSEATMCV 85
           ++L   + + GVWLVKVPKY++ +W K  G  E GKL+I +  G +  VS +L+E    +
Sbjct: 6   LDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLANI 64

Query: 86  D-----PNEEKIPKDHRLDVQIVNRQTLGVFSHYIPPVNPDAIVPESEKLMLEGKIVQKL 140
                 P     P++H   +Q V  QTL VF+              S+KL LEG +VQ+ 
Sbjct: 65  HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTES-----------SSDKLSLEGIVVQRA 113

Query: 141 ECRP 144
           ECRP
Sbjct: 114 ECRP 117


>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 69

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query: 189 YLKEILKEVCNYNLKNPHKNMWELKPEYRCYK 220
           YLKEILKE+   N+K  HKN WELKPEYR Y+
Sbjct: 38  YLKEILKEIGVQNVKGIHKNTWELKPEYRHYQ 69



 Score = 43.9 bits (104), Expect = 5e-07
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 1  MLFAAFEKHQYYNIKDLVKITKQPIVNL 28
          MLF+AFEKHQYYN+KDLV ITKQP+V L
Sbjct: 12 MLFSAFEKHQYYNLKDLVDITKQPVVYL 39


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 27.7 bits (61), Expect = 1.1
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 155 LDSIIKASQPLRQVKHLDKIVQNYKPVSNHKHLTYLKEILKEVCNYNLKNPHKNMWELKP 214
           +   I    P   +K+ + +      ++          ++++     L N H+   E++P
Sbjct: 156 ISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEK---LILNNSHRVTIEMQP 212

Query: 215 EYRCYKEEEKKEEA 228
           +     +EE +E+ 
Sbjct: 213 DPEKATQEEVEEKN 226


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 25.9 bits (56), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 84  CVDPNEEKIPKDHRLDVQIVNRQ 106
           C+ PN EK     +LD  +V  Q
Sbjct: 605 CIIPNHEKRA--GKLDAHLVLEQ 625


>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 25.5 bits (56), Expect = 6.9
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 54/190 (28%)

Query: 54  PGNIEAGKLKIVRNPGQKP------------VVSLSLSEATMCVDPNEEKIPKDHRLDVQ 101
            G I     KIV    + P            ++  S       +DP  +KI  ++R   +
Sbjct: 86  AGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYR---K 142

Query: 102 IVNRQTLGVFSHYIPPVN-----------PDA-----IVPESEKLMLEG---KIVQKLEC 142
             N+   GVF  Y P +            PDA     I+ +  ++ L G    +  KL  
Sbjct: 143 THNQ---GVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQ 199

Query: 143 RPYAD-SCYMKLKLDSIIKASQPLRQVKHLDKIVQNYKPVSNHKHLTYLKEILKEVCNYN 201
                      + L+  I+  + + +                H+ L  +KE +     Y+
Sbjct: 200 FTSLQADLENGVNLEQTIRLREEIAE---------------QHRALGQMKE-MAAKYGYD 243

Query: 202 LKNPHKNMWE 211
           +  P  N  E
Sbjct: 244 ISGPATNAQE 253


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 25.4 bits (55), Expect = 7.0
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)

Query: 84  CVDPNEEKIPKDHRLDVQIVNRQ--TLGV 110
           C+  N+ K      +D   V  Q   LG+
Sbjct: 579 CIKSNDNKQA--GVIDEDRVRHQVRYLGL 605


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 25.0 bits (54), Expect = 8.8
 Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 84  CVDPNEEKIPKDHRLDVQIVNRQ 106
           C+ PN +++P   +L+ ++V  Q
Sbjct: 608 CIIPNNKQLP--AKLEDKVVLDQ 628


>d2a6aa2 c.55.1.9 (A:104-193) Hypothetical protein TM0874
           {Thermotoga maritima [TaxId: 2336]}
          Length = 90

 Score = 23.8 bits (51), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 118 VNPDAIVPESEKLMLEGKIVQKLECRP 144
           ++P  +V ESE+L  E K +   E  P
Sbjct: 59  ISPAVLVEESERLFREKKTIHYYEIEP 85


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 25.1 bits (54), Expect = 9.4
 Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 84  CVDPNEEKIPKDHRLDVQIVNRQ 106
           C+ PN+ K P     D +   +Q
Sbjct: 599 CIKPNDFKFP--FTFDEKRAVQQ 619


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,624
Number of extensions: 42427
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 12
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)