BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15251
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/467 (50%), Positives = 320/467 (68%), Gaps = 1/467 (0%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+L+ANRGEIACR+MR+A+ +GI V+V+SDID A HV AD A L G D+YL
Sbjct: 11 LLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGD 70
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
+I+ A+ S QAIHPGYGFLSENA+FA A E L+F+GP + AI MG KS +K +M
Sbjct: 71 RIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALME 130
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
+A VP++PGYHGE Q+ E +A RIGYP+++KA GGGGKGM++V A L SA
Sbjct: 131 EAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSA 190
Query: 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250
QRE+++AF D+++L+EKY+ PRH+E+Q+ DR+G+ +YL ERDCS+QRRHQK++EEAPA
Sbjct: 191 QREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPA 250
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMI 310
PG+ +E R +G V+ A+A+ Y AGTVEF++D G+F+FMEMNTRLQVEHPV+E I
Sbjct: 251 PGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLD-ERGQFFFMEMNTRLQVEHPVTEAI 309
Query: 311 TGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEH 370
TG+DLV WQ+ VA G+ LPL QE + L GH+ E R+YAE+P FLP +G L R
Sbjct: 310 TGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAAA 369
Query: 371 SDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFL 430
R+++GV EGDEVS YDPM++KL+ W E R A ++ L++ + GL TN+ FL
Sbjct: 370 GPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNLAFL 429
Query: 431 INLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLK 477
+ + F ++ TGFI +H+D+LL E QAA L+
Sbjct: 430 RRILGHPAFAAAELDTGFIARHQDDLLPAPQALPEHFWQAAAEAWLQ 476
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 45/64 (70%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQN 713
+PM G + +VLV+PGQ V+ G ++V+ AMKME+ I + +G+++ ++ + G+ +++
Sbjct: 587 APMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTP 646
Query: 714 LVKI 717
LV++
Sbjct: 647 LVEL 650
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 273/725 (37%), Positives = 410/725 (56%), Gaps = 77/725 (10%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+ + ILIANRGEIACR+++TA+KMGI V++YSD D ALHV+MADEA + + +Y
Sbjct: 1 MFNKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSY 60
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
+ K++ + QA+HPGYGFLSEN++FA A+E +IFVGP AI MG K TSK
Sbjct: 61 IVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSK 120
Query: 127 EIMIKAEVPVIPGYHG--EDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFL 184
+I +A V +PGY G ED +E + + + +IGYP+MIKA GGGGKGMRI +
Sbjct: 121 KIAQEANVSTVPGYMGLIEDADEAVKI--SNQIGYPVMIKASAGGGGKGMRIAWNDQEAR 178
Query: 185 AQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKI 244
+S++ E+ ++F D ++ +EK++ PRHIE+Q++ D +GN +YL ER+CS+QRR+QK+
Sbjct: 179 EGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKV 238
Query: 245 IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEH 304
+EEAP+P + R +G V +A+AV Y +AGTVEFI+D FYF+EMNTRLQVEH
Sbjct: 239 VEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVD-GQKNFYFLEMNTRLQVEH 297
Query: 305 PVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTH 364
PV+E+ITGVDLV+ + VA+G+ L + Q D++L G + E R+YAE+PY GFLP G LT
Sbjct: 298 PVTELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTR 357
Query: 365 LRPPEHS-------------------DTIRIETGVIEGDEVSVHYDPMISKLVVWDENRT 405
RPP + +R +TGV EG E+S++YDPMI+KL W R
Sbjct: 358 YRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRA 417
Query: 406 LALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFI-DQHKDELLTRTLPQT 464
A+ M+ AL +++ G+ N+ FL + + FI GD+ T FI +++ + LP+T
Sbjct: 418 AAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPET 477
Query: 465 EIILQAALSLVLKQIQDAKLEKAKSNGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAKL 524
++ AA + + ++ A++ + + +G RM++ + +V Q D +
Sbjct: 478 DLRRVAAAAAAMHRV--AEIRRTRVSG---------RMDNHERRVGTEWVVTLQGADFPV 526
Query: 525 EKAKSNRNVFSLLTGFRMNHSHVKTVQIQHLNKEYNVQVTLSAHTYRVSIRGDPSSELCI 584
T+ H + S GD + L +
Sbjct: 527 ------------------------TIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMV 562
Query: 585 KNASLTQVSKYGYELVAEGEKGRIRSSVVCLDGSVSVFT-KTGSYQFNLPGKSYSLEPED 643
A L V K G ++ G + R R + D V V T + +P K L P+
Sbjct: 563 DGAPL--VLKVGK--ISGGFRIRTRGA----DLKVHVRTPRQAELARLMPEK---LPPDT 611
Query: 644 SALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703
S + ++ PMPG++ KV V+ GQ V+ G + I AMKME ++ + G++ +I +
Sbjct: 612 SKM-----LLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINAS 666
Query: 704 AGQSI 708
AG S+
Sbjct: 667 AGNSL 671
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/446 (47%), Positives = 307/446 (68%), Gaps = 3/446 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+ +LIANRGEIA RI+R + +GI+ V++YS+ D DALH ++ADEAY + S D+YL
Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYL 60
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N IL IA + C +HPGYGFL+ENA+FA E +L F+GPS ++I+ MGIK +K
Sbjct: 61 NIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKA 120
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
MIKA VPV+PG G ++ + A++IGYP++IKA GGGGKG+R+ RD
Sbjct: 121 EMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGF 180
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
R ++E+Q+AF + + +EK+I++ RHIE+QI+GD YGN ++L ERDC++QRR QK++EE
Sbjct: 181 RMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEE 240
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
AP+P + E R +G+ V+ A+AV Y NAGT+EFI D + +FYFMEMNTR+QVEHPV+
Sbjct: 241 APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVT 300
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNL-THLR 366
EM+TG+DLV+ QL VA G LP KQED++L GH+ E RI AENPY+ F+P G + +L
Sbjct: 301 EMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLA 360
Query: 367 PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTN 426
P + +RIE+ + +YD M++KL++ + R A+ +ALS++ + G+DT
Sbjct: 361 PGGYG--VRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTT 418
Query: 427 INFLINLCSNDHFIQGDIHTGFIDQH 452
I F I L +ND F G +T F++Q+
Sbjct: 419 IPFHIKLLNNDIFRSGKFNTNFLEQN 444
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/448 (44%), Positives = 299/448 (66%), Gaps = 3/448 (0%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+++ +L+ANRGEIA RI+R K++GI V++Y+++++ A HVK+ADEAY + G LDTY
Sbjct: 1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMI-GTDPLDTY 59
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN+ +I+++A+ AIHPGYGFL+ENAEFA E + F+GP + I MG K+ SK
Sbjct: 60 LNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSK 119
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
E+M KA VPV+PG G ++ E A IGYP+++KA GGGG+G+RI R+ +
Sbjct: 120 EVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKN 179
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A RE++ AF +LLEK+I++P+HIE Q++GD++GN ++L ERDCS+QRR+QK++E
Sbjct: 180 YEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVE 239
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ ++ E R G+ + A+ + Y+NAGT+EFI D G YF+EMNTR+QVEHPV
Sbjct: 240 IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIAD-QEGNLYFIEMNTRIQVEHPV 298
Query: 307 SEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLR 366
SEM+TG+D+V+WQ+ +A+G+ L +KQED++ G++ E RI AE+P + F P +
Sbjct: 299 SEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYY 358
Query: 367 PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTN 426
P IR+E G EV+ +YD MI+KL+ W A+ +M+ AL Y+I G+ T
Sbjct: 359 VP-GGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTT 417
Query: 427 INFLINLCSNDHFIQGDIHTGFIDQHKD 454
I LIN+ F G T ++++H +
Sbjct: 418 IPLLINIMKEKDFKAGKFTTKYLEEHPE 445
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 299/453 (66%), Gaps = 13/453 (2%)
Query: 4 ASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSL 63
S +LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+
Sbjct: 18 GSHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSV 77
Query: 64 DTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKS 123
+YLN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K
Sbjct: 78 KSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKV 137
Query: 124 TSKEIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
++ M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR
Sbjct: 138 SAIAAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVR 193
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238
A + + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+Q
Sbjct: 194 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 253
Query: 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
RRHQK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNT
Sbjct: 254 RRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNT 311
Query: 299 RLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPG 358
R+QVEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP
Sbjct: 312 RIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPS 370
Query: 359 AGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G +T P + +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL +
Sbjct: 371 PGKITRFHAPGGAG-VRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 429
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
I G+ TN++ I + ++++F G + ++++
Sbjct: 430 IIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 462
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 298/453 (65%), Gaps = 13/453 (2%)
Query: 4 ASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSL 63
S +LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+
Sbjct: 18 GSHMLDKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSV 77
Query: 64 DTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKS 123
+YLN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K
Sbjct: 78 KSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKV 137
Query: 124 TSKEIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
++ M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR
Sbjct: 138 SAIAAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVR 193
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238
A + + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+Q
Sbjct: 194 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 253
Query: 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
RRHQK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNT
Sbjct: 254 RRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNT 311
Query: 299 RLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPG 358
R+QVEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP
Sbjct: 312 RIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPS 370
Query: 359 AGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G +T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL +
Sbjct: 371 PGKITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 429
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
I G+ TN++ I + ++++F G + ++++
Sbjct: 430 IIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 462
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/473 (45%), Positives = 308/473 (65%), Gaps = 14/473 (2%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+ +Y
Sbjct: 22 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 81
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K ++
Sbjct: 82 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 141
Query: 127 EIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR A
Sbjct: 142 AAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVRGDA 197
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
+ + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+QRRH
Sbjct: 198 ELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRH 257
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
QK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNTR+Q
Sbjct: 258 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQ 315
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGN 361
VEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP G
Sbjct: 316 VEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGK 374
Query: 362 LTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIA 421
+T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL + I
Sbjct: 375 ITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIID 433
Query: 422 GLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSL 474
G+ TN++ I + ++++F G + ++++ K L ++ P + + + A +L
Sbjct: 434 GIKTNVDLQIRIMNDENFQHGGTNIHYLEK-KLGLQEKSDPNSSSVDKLAAAL 485
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/450 (46%), Positives = 297/450 (66%), Gaps = 13/450 (2%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+ +Y
Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K ++
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 127 EIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR A
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVRGDA 176
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
+ + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+QRRH
Sbjct: 177 ELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRH 236
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
QK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNTR+Q
Sbjct: 237 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQ 294
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGN 361
VEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP G
Sbjct: 295 VEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGK 353
Query: 362 LTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIA 421
+T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL + I
Sbjct: 354 ITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIID 412
Query: 422 GLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
G+ TN++ I + ++++F G + ++++
Sbjct: 413 GIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/450 (46%), Positives = 297/450 (66%), Gaps = 13/450 (2%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+ +Y
Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K ++
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 127 EIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR A
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVRGDA 176
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
+ + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+QRRH
Sbjct: 177 ELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRH 236
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
QK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNTR+Q
Sbjct: 237 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQ 294
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGN 361
VEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP G
Sbjct: 295 VEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGK 353
Query: 362 LTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIA 421
+T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL + I
Sbjct: 354 ITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIID 412
Query: 422 GLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
G+ TN++ I + ++++F G + ++++
Sbjct: 413 GIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 298/453 (65%), Gaps = 13/453 (2%)
Query: 4 ASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSL 63
S +LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+
Sbjct: 1 GSHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSV 60
Query: 64 DTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKS 123
+YLN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K
Sbjct: 61 KSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKV 120
Query: 124 TSKEIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
++ M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR
Sbjct: 121 SAIAAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVR 176
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238
A + + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+Q
Sbjct: 177 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 236
Query: 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
RRHQK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNT
Sbjct: 237 RRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNT 294
Query: 299 RLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPG 358
R+QVEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP
Sbjct: 295 RIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPS 353
Query: 359 AGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G +T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL +
Sbjct: 354 PGKITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 412
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
I G+ TN++ I + ++++F G + ++++
Sbjct: 413 IIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/453 (45%), Positives = 298/453 (65%), Gaps = 13/453 (2%)
Query: 4 ASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSL 63
S +LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+
Sbjct: 1 GSHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSV 60
Query: 64 DTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKS 123
+YLN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K
Sbjct: 61 KSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKV 120
Query: 124 TSKEIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
++ M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR
Sbjct: 121 SAIAAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVR 176
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238
A + + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+Q
Sbjct: 177 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 236
Query: 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
RRHQK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF++MNT
Sbjct: 237 RRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIKMNT 294
Query: 299 RLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPG 358
R+QVEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP
Sbjct: 295 RIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPS 353
Query: 359 AGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G +T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL +
Sbjct: 354 PGKITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 412
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
I G+ TN++ I + ++++F G + ++++
Sbjct: 413 IIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/450 (46%), Positives = 296/450 (65%), Gaps = 13/450 (2%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+ +Y
Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K ++
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 127 EIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR A
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVRGDA 176
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
+ + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+QRRH
Sbjct: 177 ELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRH 236
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
QK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNTR+Q
Sbjct: 237 QKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQ 294
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGN 361
V HPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP G
Sbjct: 295 VAHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGK 353
Query: 362 LTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIA 421
+T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL + I
Sbjct: 354 ITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIID 412
Query: 422 GLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
G+ TN++ I + ++++F G + ++++
Sbjct: 413 GIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/453 (45%), Positives = 297/453 (65%), Gaps = 13/453 (2%)
Query: 4 ASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSL 63
S +LD I+IANRGEIA I+R K++GI+ V+V+S D D HV +ADE + S+
Sbjct: 1 GSHMLDKIVIANRGEIALEILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSV 60
Query: 64 DTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKS 123
+YLN I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K
Sbjct: 61 KSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKV 120
Query: 124 TSKEIMIKAEVPVIPGYHGE-----DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
++ M KA VP +PG G D+N I A+RIGYP++IKA GGGG+GMR+VR
Sbjct: 121 SAIAAMKKAGVPCVPGSDGPLGDDMDKNRAI----AKRIGYPVIIKASGGGGGRGMRVVR 176
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238
A + + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+Q
Sbjct: 177 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 236
Query: 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
RRHQK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNT
Sbjct: 237 RRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNT 294
Query: 299 RLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPG 358
R+QVEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP
Sbjct: 295 RIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPS 353
Query: 359 AGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G +T P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL +
Sbjct: 354 PGKITRFHAP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 412
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
I G+ TN++ I + ++++F G + ++++
Sbjct: 413 IIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/443 (41%), Positives = 293/443 (66%), Gaps = 4/443 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+++LIANRGEIA RIM+T K+MGI+ V+VYSD D + HV AD + L G+++ +TYL
Sbjct: 31 FETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYL 90
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
+ KI++ A ++ QAI PGYGFLSENA+F++ ++FVGPS +AIR +G+K +++E
Sbjct: 91 DIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSARE 150
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
I +A+VP++PG G ++ + E A+++ YP+M+K+ GGGG G++ V +
Sbjct: 151 IAERAKVPLVPG-SGLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVF 209
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
+ Q + +S F D+ V +E+++ + RH+E+Q++GD +G + + ERDCS+QRR+QK+IEE
Sbjct: 210 ETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEE 269
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
PAP + R+++ + ++ ++Y AGTVEFI D EFYF+E+N RLQVEHP++
Sbjct: 270 TPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPIT 329
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EM+TG+DLV+W L +A+ +++ G S E R+YAENP + F P G LT +
Sbjct: 330 EMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSF 389
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P + R++T V +G VS YDP ++K++V ++R A+ K+ QAL++ + G TNI
Sbjct: 390 PSWA---RVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITNI 446
Query: 428 NFLINLCSNDHFIQGDIHTGFID 450
++L ++ S+ F + + T +D
Sbjct: 447 DYLRSIASSKMFKEAKVATKVLD 469
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 641 PEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEI 700
P+D+ L + S G K + G V+ GD +++I AMK E V+ + SG + +I
Sbjct: 1164 PDDAEL-----LYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKI 1218
Query: 701 FYAAGQSIQKNQNLVKIV 718
+ G ++ + IV
Sbjct: 1219 LHKNGDMVEAGDLVAVIV 1236
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 290/453 (64%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 27 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 324
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 383
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R + +R++ G +G E+S +YD ++ KL + A KM ++L +
Sbjct: 384 GTIIAYRSSGGA-GVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM 442
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 443 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 475
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1098 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1157
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1158 TIATGDLLIEI 1168
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 289/453 (63%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 4 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 63
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 123
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 124 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 183
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 184 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 243
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 244 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 301
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 302 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 360
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R +R++ G +G E+S +YD ++ KL + A KM ++L +
Sbjct: 361 GTIIAYR-SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM 419
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 420 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 452
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1075 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1134
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1135 TIATGDLLIEI 1145
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 289/453 (63%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 4 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 63
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 123
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 124 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 183
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 184 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 243
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 244 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 301
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 302 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 360
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R +R++ G +G E+S +YD ++ KL + A KM ++L +
Sbjct: 361 GTIIAYR-SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM 419
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 420 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 452
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1075 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1134
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1135 TIATGDLLIEI 1145
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 289/453 (63%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 4 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 63
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 123
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 124 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 183
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 184 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 243
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 244 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 301
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 302 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 360
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R +R++ G +G E+S +YD ++ KL + A KM ++L +
Sbjct: 361 GTIIAYR-SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM 419
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 420 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 452
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1075 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1134
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1135 TIATGDLLIEI 1145
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 289/453 (63%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 27 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 324
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 383
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R +R++ G +G E+S +YD ++ KL + A KM ++L +
Sbjct: 384 GTIIAYR-SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM 442
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 443 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 475
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1098 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1157
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1158 TIATGDLLIEI 1168
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/453 (42%), Positives = 289/453 (63%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 27 IKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 324
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 383
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R +R++ G +G E+S +YD ++ KL + A +M ++L +
Sbjct: 384 GTIIAYR-SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEEMVRSLREM 442
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 443 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 475
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1098 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1157
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1158 TIATGDLLIEI 1168
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/446 (41%), Positives = 294/446 (65%), Gaps = 5/446 (1%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY 66
+L+ +LIANRGEIA RI+R K++GI+ V+V+S D + +H+ +ADE+ + + +Y
Sbjct: 1 MLEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSY 60
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
L I+ A + AIHPGYGFL+ENA+FA +E + FVGP++E IR MG K ++K
Sbjct: 61 LQIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAK 120
Query: 127 EIMIKAEVPVIPGYHGE-DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLA 185
+ M +A VP +PG G ++EE + A +GYP++IKA GGGG+GMR+V D + +
Sbjct: 121 DAMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIK 180
Query: 186 QLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245
+ + E+ +AF + V LEK++ +PRH+EVQ++ D GN ++L +RDCS+QRRHQK+I
Sbjct: 181 SAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVI 240
Query: 246 EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHP 305
EEAPAPGI + R + + VQ + Y AGT EF+ + +G FYF+EMNTR+QVEHP
Sbjct: 241 EEAPAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLYE--NGRFYFIEMNTRVQVEHP 298
Query: 306 VSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHL 365
VSEM+TGVD+V+ L +ASG++L ++QED+ +RGH+ E RI AE+P + F+P G + H
Sbjct: 299 VSEMVTGVDIVKEMLRIASGEKLSIRQEDVVIRGHALECRINAEDP-KTFMPSPGKVKHF 357
Query: 366 RPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDT 425
P + +R+++ + G V +YD ++ K++ + +R AL +M+ AL + + G+ T
Sbjct: 358 HAP-GGNGVRVDSHLYSGYSVPPNYDSLVGKVITYGADRDEALARMRNALDELIVDGIKT 416
Query: 426 NINFLINLCSNDHFIQGDIHTGFIDQ 451
N +L + F +G ++ ++++
Sbjct: 417 NTELHKDLVRDAAFCKGGVNIHYLEK 442
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/453 (42%), Positives = 288/453 (63%), Gaps = 13/453 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTY 66
+ +L+ANRGEIA RI A ++ I V++YS+ D +LH ADE+Y + ++Y
Sbjct: 27 IKKLLVANRGEIAIRIFEAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESY 86
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
LN +I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 87 LNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKAR 146
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 147 TTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDA 206
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E
Sbjct: 207 FHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVE 266
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
AP+ G+S R R+ +Q+ ++Y NAGTVEF++ S EF+F+E+N R+QVEH +
Sbjct: 267 VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPRVQVEHTI 324
Query: 307 SEMITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGA 359
+EM+TG+D+V+ Q++VA+G +L P +Q+D+ G++ + RI E+P F+P
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFMPDT 383
Query: 360 GNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY 418
G + R +R++ G +G E+S +YD ++ KL + A KM ++L +
Sbjct: 384 GTIIAYR-SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREM 442
Query: 419 QIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
+I G+ TNI FLIN+ N F GD T FI++
Sbjct: 443 RIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEE 475
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1098 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1157
Query: 707 SIQKNQNLVKI 717
+I L++I
Sbjct: 1158 TIATGDLLIEI 1168
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/449 (42%), Positives = 281/449 (62%), Gaps = 13/449 (2%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-EGKSSLDTYLNQ 69
+L+ANRGEIA R+ R ++GIR V++YS D + H ADEAY + EGK ++ YL+
Sbjct: 9 VLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDI 68
Query: 70 AKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM 129
I++IA AIHPGYGFLSEN +FA +IF+GP+ + G K ++
Sbjct: 69 EGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAA 128
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
+ A +PVIPG G E ++ AE GYP++IKA GGGG+GMRIVR +
Sbjct: 129 VNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFER 188
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
A+ E+++AF +V +EK I++P+HIEVQI+GD GN V+LYERDCSVQRRHQK++E AP
Sbjct: 189 AKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAP 248
Query: 250 APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEM 309
+ +S E R R+ VQ+ R+V Y NAGTVEF++ S EFYF+E+N R+QVEH ++EM
Sbjct: 249 SVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPRIQVEHTITEM 306
Query: 310 ITGVDLVQWQLMVASGQEL-------PLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNL 362
ITG+D+VQ Q+++A G L P KQED+++ G++ ++R+ E+P F+P G +
Sbjct: 307 ITGIDIVQSQILIADGCSLHSHEVGIP-KQEDIRINGYAIQSRVTTEDPLNNFMPDTGKI 365
Query: 363 THLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIA 421
R +R++ G +G ++ +YD ++ KL W A KM + L +++I
Sbjct: 366 MAYRSG-GGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIR 424
Query: 422 GLDTNINFLINLCSNDHFIQGDIHTGFID 450
G+ TNI FL N+ + F+ G+ T FID
Sbjct: 425 GIKTNIPFLENVVQHPKFLSGEYDTSFID 453
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 354 bits (909), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/457 (38%), Positives = 282/457 (61%), Gaps = 15/457 (3%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-------EGK 60
+ IL+ANR EIA R+ R A ++GI+ V+++++ D ALH ADE+Y++
Sbjct: 14 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 73
Query: 61 SSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMG 120
+++YL+ +++ +A S AIHPGYG LSE+ EF +A +IF+GP ++ +R +G
Sbjct: 74 GPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLG 133
Query: 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDS 180
K ++ + I VPV+P + + + A IGYP+M+KA GGGG+GMR++R
Sbjct: 134 NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSE 193
Query: 181 ANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRR 240
A+ ++ A+RE+ +AF +V LEK ++ RH+E QI+GD +GN V+L+ERDCSVQRR
Sbjct: 194 ADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRR 253
Query: 241 HQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRL 300
+QK++E APAP +S R L + +++A A Y AGTVE++MD +G+FYF+E+N R+
Sbjct: 254 NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRI 313
Query: 301 QVEHPVSEMITGVDLVQWQLMVASGQELPL------KQEDLQLRGHSFETRIYAENPYEG 354
QVEH V+E++TG+D+V+ Q+ + G + QED++L GH+ + R+ E+P
Sbjct: 314 QVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHN 373
Query: 355 FLPGAGNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQ 413
F+P G +T R IR++ G G ++ +YDP++ K+ W N A+++M +
Sbjct: 374 FIPDYGRITAYR-SASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDR 432
Query: 414 ALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFID 450
AL +++I G+ TN+ FL + + F T FID
Sbjct: 433 ALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFID 469
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 596 GYELVAEGEKGRIRSSVVCLDGSVSVFTKTG--SYQFNLPGKSYSLEPEDSA-------- 645
G EL A+ EKG+ ++V ++ +VS G + F L G+ ++ D A
Sbjct: 1030 GEELFADIEKGK---TLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAV 1086
Query: 646 -----LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEI 700
+ + V +PMPG++ +V V GQAV GD ++ I AMKME I + G I E+
Sbjct: 1087 RRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV 1146
Query: 701 FYAAGQSIQKNQNL 714
AG I L
Sbjct: 1147 LVKAGDQIDAKDLL 1160
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 354 bits (909), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/457 (38%), Positives = 282/457 (61%), Gaps = 15/457 (3%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-------EGK 60
+ IL+ANR EIA R+ R A ++GI+ V+++++ D ALH ADE+Y++
Sbjct: 14 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 73
Query: 61 SSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMG 120
+++YL+ +++ +A S AIHPGYG LSE+ EF +A +IF+GP ++ +R +G
Sbjct: 74 GPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLG 133
Query: 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDS 180
K ++ + I VPV+P + + + A IGYP+M+KA GGGG+GMR++R
Sbjct: 134 NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSE 193
Query: 181 ANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRR 240
A+ ++ A+RE+ +AF +V LEK ++ RH+E QI+GD +GN V+L+ERDCSVQRR
Sbjct: 194 ADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRR 253
Query: 241 HQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRL 300
+QK++E APAP +S R L + +++A A Y AGTVE++MD +G+FYF+E+N R+
Sbjct: 254 NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRI 313
Query: 301 QVEHPVSEMITGVDLVQWQLMVASGQELPL------KQEDLQLRGHSFETRIYAENPYEG 354
QVEH V+E++TG+D+V+ Q+ + G + QED++L GH+ + R+ E+P
Sbjct: 314 QVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHN 373
Query: 355 FLPGAGNLTHLRPPEHSDTIRIETGV-IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQ 413
F+P G +T R IR++ G G ++ +YDP++ K+ W N A+++M +
Sbjct: 374 FIPDYGRITAYR-SASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDR 432
Query: 414 ALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFID 450
AL +++I G+ TN+ FL + + F T FID
Sbjct: 433 ALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFID 469
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 596 GYELVAEGEKGRIRSSVVCLDGSVSVFTKTG--SYQFNLPGKSYSLEPEDSA-------- 645
G EL A+ EKG+ ++V ++ +VS G + F L G+ ++ D A
Sbjct: 1030 GEELFADIEKGK---TLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAV 1086
Query: 646 -----LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEI 700
+ + V +PMPG++ +V V GQAV GD ++ I AMKME I + G I E+
Sbjct: 1087 RRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV 1146
Query: 701 FYAAGQSIQKNQNL 714
AG I L
Sbjct: 1147 LVKAGDQIDAKDLL 1160
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 278/445 (62%), Gaps = 4/445 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+ SILIANRGEIA R +RT K+ G + + VYS+ D DAL++K AD + + S ++YL
Sbjct: 6 IKSILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKARSSESYL 65
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N I+ A ++ AI PGYGFLSEN F + + F+GPS EA KS +K+
Sbjct: 66 NIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQ 125
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+ +A VPVIPG G E + A+ IGYP+++KA GGGG+G R+V + +
Sbjct: 126 VXQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAY 185
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
SA+ E+ +AF D EKYIQ+PRHIEVQ+IGD +GN +++ ERDCS QRRHQK+IEE
Sbjct: 186 WSAESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSXQRRHQKLIEE 245
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
+PA + + R+RL T ++ A+A+ Y AGT EF++D + +FYF+E NTRLQVEH VS
Sbjct: 246 SPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNL-DFYFIEXNTRLQVEHCVS 304
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
E ++G+D+++ + VA G LP QE ++L GHS E RI AE+ + FLP G +T P
Sbjct: 305 EXVSGIDIIEQXIKVAEGYALP-SQESIKLNGHSIECRITAEDS-KTFLPSPGKITKYIP 362
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P + +R E+ + V +YD I KLVVW E+R A+ K K AL + I+G+ T
Sbjct: 363 PAGRN-VRXESHCYQDYSVPAYYDSXIGKLVVWAEDRNKAIAKXKVALDELLISGIKTTK 421
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQH 452
+F ++ N FI + T ++ +H
Sbjct: 422 DFHLSXXENPDFINNNYDTNYLARH 446
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 251/508 (49%), Gaps = 73/508 (14%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMG---------IRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 39 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 98
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N I+DIA R QA+ G+G SEN + + N + F+GP SEA
Sbjct: 99 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 158
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPGYHGE----DQNEEIL--------------------- 150
+ +G K S + +VP +P + G + E+ L
Sbjct: 159 MWALGDKIASTVVAQTLQVPTLP-WSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDV 217
Query: 151 ---MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
+E AERIG+PLMIKA GGGGKG+R + +F R Q E S + L K
Sbjct: 218 DEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMK 273
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQ 267
Q RH+EVQI+ D+YGN V L+ RDCS+QRRHQKI+EEAPA + ++
Sbjct: 274 LAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIR 333
Query: 268 VARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQE 327
+A+ V Y +AGTVE++ G F+F+E+N RLQVEHP +EMI V+L QL +A G
Sbjct: 334 LAKTVGYVSAGTVEYLYS-QDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMG-- 390
Query: 328 LPLKQ-EDLQL-----------------------RGHSFETRIYAENPYEGFLPGAGNLT 363
+PL + +D++L RGH RI +ENP EGF P +G +
Sbjct: 391 VPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQ 450
Query: 364 HLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG- 422
L S + V + D W ENR A++ M AL + I G
Sbjct: 451 ELN-FRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 509
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFID 450
T + +LINL + F DI TG++D
Sbjct: 510 FRTTVEYLINLLETESFQNNDIDTGWLD 537
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 251/508 (49%), Gaps = 73/508 (14%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMG---------IRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 55 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 114
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N I+DIA R QA+ G+G SEN + + N + F+GP SEA
Sbjct: 115 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 174
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPGYHGE----DQNEEIL--------------------- 150
+ +G K S + +VP +P + G + E+ L
Sbjct: 175 MWALGDKIASTVVAQTLQVPTLP-WSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDV 233
Query: 151 ---MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
+E AERIG+PLMIKA GGGGKG+R + +F R Q E S + L K
Sbjct: 234 DEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMK 289
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQ 267
Q RH+EVQI+ D+YGN V L+ RDCS+QRRHQKI+EEAPA + ++
Sbjct: 290 LAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIR 349
Query: 268 VARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQE 327
+A+ V Y +AGTVE++ G F+F+E+N RLQVEHP +EMI V+L QL +A G
Sbjct: 350 LAKTVGYVSAGTVEYLYS-QDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMG-- 406
Query: 328 LPLKQ-EDLQL-----------------------RGHSFETRIYAENPYEGFLPGAGNLT 363
+PL + +D++L RGH RI +ENP EGF P +G +
Sbjct: 407 VPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQ 466
Query: 364 HLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG- 422
L S + V + D W ENR A++ M AL + I G
Sbjct: 467 ELN-FRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 525
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFID 450
T + +LINL + F DI TG++D
Sbjct: 526 FRTTVEYLINLLETESFQNNDIDTGWLD 553
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 251/508 (49%), Gaps = 73/508 (14%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMG---------IRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 55 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 114
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N I+DIA R QA+ G+G SEN + + N + F+GP SEA
Sbjct: 115 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 174
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPGYHGE----DQNEEIL--------------------- 150
+ +G K S + +VP +P + G + E+ L
Sbjct: 175 MWALGDKIASTVVAQTLQVPTLP-WSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDV 233
Query: 151 ---MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
+E AERIG+PLMIKA GGGGKG+R + +F R Q E S + L K
Sbjct: 234 DEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMK 289
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQ 267
Q RH+EVQI+ D+YGN V L+ RDCS+QRRHQKI+EEAPA + ++
Sbjct: 290 LAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIR 349
Query: 268 VARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQE 327
+A+ V Y +AGTVE++ G F+F+E+N RLQVEHP +EMI V+L QL +A G
Sbjct: 350 LAKTVGYVSAGTVEYLYS-QDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMG-- 406
Query: 328 LPLKQ-EDLQL-----------------------RGHSFETRIYAENPYEGFLPGAGNLT 363
+PL + +D++L RGH RI +ENP EGF P +G +
Sbjct: 407 VPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQ 466
Query: 364 HLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG- 422
L S + V + D W ENR A++ M AL + I G
Sbjct: 467 ELN-FRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 525
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFID 450
T + +LINL + F DI TG++D
Sbjct: 526 FRTTVEYLINLLETESFQNNDIDTGWLD 553
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 251/508 (49%), Gaps = 73/508 (14%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMG---------IRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 49 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 108
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N I+DIA R QA+ G+G SEN + + N + F+GP SEA
Sbjct: 109 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 168
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPGYHGE----DQNEEIL--------------------- 150
+ +G K S + +VP +P + G + E+ L
Sbjct: 169 MWALGDKIASTVVAQTLQVPTLP-WSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDV 227
Query: 151 ---MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
+E AERIG+PLMIKA GGGGKG+R + +F R Q E S + L K
Sbjct: 228 DEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMK 283
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQ 267
Q RH+EVQI+ D+YGN V L+ RDCS+QRRHQKI+EEAPA + ++
Sbjct: 284 LAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIR 343
Query: 268 VARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQE 327
+A+ V Y +AGTVE++ G F+F+E+N RLQVEHP +EMI V+L QL +A G
Sbjct: 344 LAKTVGYVSAGTVEYLYS-QDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMG-- 400
Query: 328 LPLKQ-EDLQL-----------------------RGHSFETRIYAENPYEGFLPGAGNLT 363
+PL + +D++L RGH RI +ENP EGF P +G +
Sbjct: 401 VPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQ 460
Query: 364 HLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG- 422
L S + V + D W ENR A++ M AL + I G
Sbjct: 461 ELN-FRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 519
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFID 450
T + +LINL + F DI TG++D
Sbjct: 520 FRTTVEYLINLLETESFQNNDIDTGWLD 547
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 170/505 (33%), Positives = 249/505 (49%), Gaps = 66/505 (13%)
Query: 7 VLDSILIANRGEIACRIMRTAKKM---------GIRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 40 VIEKVLIANNGIAAVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 99
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N ILDIA R QA+ G+G SEN + + N + F+GP S+A
Sbjct: 100 PVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQA 159
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPG--------YHGEDQNEEIL----------------- 150
+ +G K S + A +P +P + D ++ IL
Sbjct: 160 MWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDD 219
Query: 151 -MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYI 209
++ AE +GYP+MIKA GGGGKG+R V ++ +F R Q E S + + +
Sbjct: 220 GLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPG----SPIFVMRLA 275
Query: 210 QSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVA 269
+ RH+EVQI+ D+YGN + L+ RDCSVQRRHQKIIEEAPA + + V++A
Sbjct: 276 KQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLA 335
Query: 270 RAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQEL- 328
+ V Y +AGTVE++ G FYF+E+N RLQVEHP +EM+ V+L QL +A G L
Sbjct: 336 KMVGYVSAGTVEYLYS-QDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLY 394
Query: 329 -----------------PLKQEDLQ----LRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
P+ ED RGH RI +ENP EGF P +G + L
Sbjct: 395 RIKDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNF 454
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG-LDTN 426
+ + + G + D W ENR A++ M AL + I G T
Sbjct: 455 RSNKNVWGYFSVAAAGG-LHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTT 513
Query: 427 INFLINLCSNDHFIQGDIHTGFIDQ 451
+ +LI L + F I TG++D+
Sbjct: 514 VEYLIKLLETESFQMNRIDTGWLDR 538
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 241 bits (616), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 252/517 (48%), Gaps = 84/517 (16%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMG---------IRVVSVYS--DIDADALHVKMADEAY 55
V+ ILIAN G A + +R+ +K ++ V++ + D++A+A +++MAD+
Sbjct: 46 VISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYI 105
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNR--LIFVGPSS 113
+ G ++ + Y N I+DIA R+ A+ G+G SEN + ++ +IF+GP
Sbjct: 106 EVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPG 165
Query: 114 EAIRNMGIKSTSKEIMIKAEVPVIPG------------------------YHGEDQNEEI 149
A+R++G K +S + A+VP IP G + E
Sbjct: 166 NAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPED 225
Query: 150 LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYI 209
+++A+RIG+P+MIKA GGGGKG+R V +F+A A E S + + K
Sbjct: 226 GLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLA 281
Query: 210 QSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVA 269
RH+EVQ++ D+YG + L+ RDCSVQRRHQKIIEEAP +E + V++
Sbjct: 282 GRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLG 341
Query: 270 RAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASG---- 325
+ V Y +AGTVE++ G+FYF+E+N RLQVEHP +EM++GV+L QL +A G
Sbjct: 342 KLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMH 401
Query: 326 -------------------------QELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAG 360
Q+ KQ +GH RI +E+P +GF P G
Sbjct: 402 RISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGG 461
Query: 361 NLTHLRPPEHSDTIRIETGVIE----GDEVSVH--YDPMISKLVVWDENRTLALNKMKQA 414
L H R + V G+ ++H D + + ENR + M A
Sbjct: 462 TL-------HELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVA 514
Query: 415 LSQYQIAG-LDTNINFLINLCSNDHFIQGDIHTGFID 450
L + I G T + +LI L + F I TG++D
Sbjct: 515 LKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLD 551
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 252/517 (48%), Gaps = 84/517 (16%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMG---------IRVVSVYS--DIDADALHVKMADEAY 55
V+ ILIAN G A + +R+ +K ++ V++ + D++A+A +++MAD+
Sbjct: 45 VISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYI 104
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNR--LIFVGPSS 113
+ G ++ + Y N I+DIA R+ A+ G+G SEN + ++ +IF+GP
Sbjct: 105 EVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPG 164
Query: 114 EAIRNMGIKSTSKEIMIKAEVPVIPG------------------------YHGEDQNEEI 149
A+R++G K +S + A+VP IP G + E
Sbjct: 165 NAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPED 224
Query: 150 LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYI 209
+++A+RIG+P+MIKA GGGGKG+R V +F+A A E S + + K
Sbjct: 225 GLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLA 280
Query: 210 QSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVA 269
RH+EVQ++ D+YG + L+ RDCSVQRRHQKIIEEAP +E + V++
Sbjct: 281 GRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLG 340
Query: 270 RAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASG---- 325
+ V Y +AGTVE++ G+FYF+E+N RLQVEHP +EM++GV+L QL +A G
Sbjct: 341 KLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMH 400
Query: 326 -------------------------QELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAG 360
Q+ KQ +GH RI +E+P +GF P G
Sbjct: 401 RISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGG 460
Query: 361 NLTHLRPPEHSDTIRIETGVIE----GDEVSVH--YDPMISKLVVWDENRTLALNKMKQA 414
L H R + V G+ ++H D + + ENR + M A
Sbjct: 461 TL-------HELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVA 513
Query: 415 LSQYQIAG-LDTNINFLINLCSNDHFIQGDIHTGFID 450
L + I G T + +LI L + F I TG++D
Sbjct: 514 LKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLD 550
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%)
Query: 120 GIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
G K SK + KAEV IPG+ G ++ E + A IGYP+MIKA GGGGKGMRI D
Sbjct: 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHI 215
R + +E+ S+F D ++L+EK+I +PRHI
Sbjct: 67 DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102
>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form
Human Acetyl Coenzyme A Carboxylase
Length = 99
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 653 VSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQ 712
++PM G ++KV V+ G VK GD +MV+IAMKME+ I S G ++++FY G ++
Sbjct: 18 LAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHT 77
Query: 713 NLVKI 717
LV+
Sbjct: 78 PLVEF 82
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQN 713
SPMPG+V V V+PG AV G I VI AMKM+ +T+G +G ++ + AG ++ +
Sbjct: 30 SPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDL 89
Query: 714 LVKI 717
LV++
Sbjct: 90 LVEL 93
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQK 710
++ +P+ G V K+LV+ G VK G ++V+ AMKME I + T G +E++ ++Q
Sbjct: 10 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQG 69
Query: 711 NQNLVKI 717
Q L+KI
Sbjct: 70 GQGLIKI 76
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQK 710
++ +P+ G V K+LV+ G VK G ++V+ AMKME I + T G +E++ ++Q
Sbjct: 17 EIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQG 76
Query: 711 NQNLVKI 717
Q L+KI
Sbjct: 77 GQGLIKI 83
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 11/184 (5%)
Query: 148 EILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
E+ +E+A+ IGYPL+++A GG+ M IV D A+ LR + + S ND+ VLL+
Sbjct: 699 EMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEAD----LRRYFQTAVSVSNDAPVLLDH 754
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA---PAPGISSEFRSRLGST 264
++ ++V I D G V + +++ + A PA +S E + +
Sbjct: 755 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 812
Query: 265 GVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324
++A ++ V+F + + E Y +E+N R P TGV L + V +
Sbjct: 813 VQKLAFELQVRGLMNVQFAV--KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMA 870
Query: 325 GQEL 328
G+ L
Sbjct: 871 GKSL 874
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 147 EEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLE 206
EE L A+ +G+P +I+ GG G I + F S + ++L++
Sbjct: 153 EEALAVAAD-VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPT----KELLID 207
Query: 207 KYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQR------RHQKIIEEAPAPGISSEFRSR 260
+ + + E++++ D+ N + + CS++ I APA ++ +
Sbjct: 208 ESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQI 263
Query: 261 LGSTGVQVARAVRYHNAGT-VEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQ 319
+ + + V R + G+ V+F ++P +G +EMN R+ ++ TG + +
Sbjct: 264 MRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVA 323
Query: 320 LMVASGQEL 328
+A G L
Sbjct: 324 AKLAVGYTL 332
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 148 EILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
E+ +E+A+ IGYPL+++ GG+ M IV D A+ LR + + S ND+ VLL+
Sbjct: 699 EMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEAD----LRRYFQTAVSVSNDAPVLLDH 754
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA---PAPGISSEFRSRLGST 264
++ ++V I D G V + +++ + A PA +S E + +
Sbjct: 755 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 812
Query: 265 GVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324
++A ++ V+F + + E Y +E+N R P TGV L + V +
Sbjct: 813 VQKLAFELQVRGLMNVQFAV--KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMA 870
Query: 325 GQEL 328
G+ L
Sbjct: 871 GKSL 874
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 147 EEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLE 206
EE L A+ +G+P +I+ GG G I + F S + ++L++
Sbjct: 153 EEALAVAAD-VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPT----KELLID 207
Query: 207 KYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQR------RHQKIIEEAPAPGISSEFRSR 260
+ + + E++++ D+ N + + CS++ I APA ++ +
Sbjct: 208 ESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQI 263
Query: 261 LGSTGVQVARAVRYHNAGT-VEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQ 319
+ + + V R + G+ V+F ++P +G +EMN R+ ++ TG + +
Sbjct: 264 MRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVA 323
Query: 320 LMVASGQEL 328
+A G L
Sbjct: 324 AKLAVGYTL 332
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 148 EILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
E+ +E+A+ IGYPL+++ GG+ M IV D A+ LR + + S ND+ VLL+
Sbjct: 699 EMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEAD----LRRYFQTAVSVSNDAPVLLDH 754
Query: 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA---PAPGISSEFRSRLGST 264
++ ++V I D G V + +++ + A PA +S E + +
Sbjct: 755 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 812
Query: 265 GVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324
++A ++ V+F + + E Y +E+N R P TGV L + V +
Sbjct: 813 VQKLAFELQVRGLMNVQFAV--KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMA 870
Query: 325 GQEL 328
G+ L
Sbjct: 871 GKSL 874
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 147 EEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLE 206
EE L A+ +G+P +I+ GG G I + F S + ++L++
Sbjct: 153 EEALAVAAD-VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPT----KELLID 207
Query: 207 KYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQR------RHQKIIEEAPAPGISSEFRSR 260
+ + + E++++ D+ N + + CS++ I APA ++ +
Sbjct: 208 ESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQI 263
Query: 261 LGSTGVQVARAVRYHNAGT-VEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQ 319
+ + + V R + G+ V+F ++P +G +EMN R+ ++ TG + +
Sbjct: 264 MRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVA 323
Query: 320 LMVASGQEL 328
+A G L
Sbjct: 324 AKLAVGYTL 332
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKN 711
V +PMPG V +VLV+ G V+ G ++V+ AMKME I S G+++ I G+++
Sbjct: 8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTG 67
Query: 712 QNLVKI 717
Q L+++
Sbjct: 68 QPLIEL 73
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 107/268 (39%), Gaps = 26/268 (9%)
Query: 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNE 147
Y F + E A +EG ++ P ++A+ + K VP P +H D E
Sbjct: 65 YEFENVPVEAARRLEGRLPLY--PPAKALEVAQDRLREKTFFQGLGVPTPP-FHPVDGPE 121
Query: 148 EILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLE 206
+ L E +R+G P ++K RGG GKG +VR L E+ A ++LE
Sbjct: 122 D-LEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEAL--------EALKALGGRGLILE 172
Query: 207 KYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE---APAPGISSEFRSRLGS 263
++ R + + + R G + V+ RH I APAPG S + + +
Sbjct: 173 GFVPFDREVSLLAVRGRTGEVAFY----PLVENRHWGGILRLSLAPAPGASEALQKKAEA 228
Query: 264 TGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVA 323
++ A+ Y +EF E F EM R V + I G + Q++ +
Sbjct: 229 YALRAMEALDYVGVLALEFFQ--VGEELLFNEMAPR--VHNSGHWTIEGAETSQFENHLR 284
Query: 324 SGQELPLKQEDLQLRGHSFETRIYAENP 351
+ LPL RG S + E P
Sbjct: 285 AVLGLPLG--STAPRGQSAMVNLIGEKP 310
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 17/200 (8%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
IL+ GE+ I A+++G+ VV+V +A A+ V A+R S + +++
Sbjct: 22 ILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQV-----AHR----SYVGNMMDKD 72
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
+ + R + AI P ++ +A F +G FV P++ A + +E ++
Sbjct: 73 FLWSVVEREKPDAIIPEIEAINLDALFEFEKDG---YFVVPNARATWIAMHRERLRETLV 129
Query: 131 K-AEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
K A+VP + +E L E E+IGYP KA+ GKG V+ +
Sbjct: 130 KEAKVPTSRYMYATTLDE--LYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEE 187
Query: 190 AQRESQSAFNDSKVLLEKYI 209
A+ +++ + K+++E++I
Sbjct: 188 AKTKARG--SAEKIIVEEHI 205
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 107/240 (44%), Gaps = 31/240 (12%)
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
+ +AK +D A+ A+H YG E+ +E + + G + + K+ SK
Sbjct: 50 IEKAKDIDFALL----ALHGKYG---EDGTVQGTLESLGIPYSGSNXLSSGICXDKNISK 102
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
+I+ + E P + + E++ ++ +++G+PL++K GG G++IV D ++
Sbjct: 103 KIL-RYEGIETPDWIELTKXEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISX 161
Query: 187 LRSAQRESQSAFN-DSKVLLEKYIQSPRHI-------EVQIIGDRYGNYVYLYERDCSVQ 238
L ++ F DS+V++EKYI+ ++ II R+ + Y
Sbjct: 162 L-------ETVFEWDSEVVIEKYIKGEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDA 214
Query: 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
+++IE + +E + R+ + +A++ V+ + G Y E+NT
Sbjct: 215 STIEEVIE------LPAELKERVNKASLACYKALKCSVYARVDXXV--KDGIPYVXEVNT 266
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQK 710
++ +PMPG V + V G V G P+ V+ AMKME V+TS G + ++ +++
Sbjct: 651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEG 710
Query: 711 NQNLVKI 717
+ +++I
Sbjct: 711 DDLILEI 717
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQK 710
++ +PMPG V + V G V G P+ V+ AMKME V+TS G + ++ +++
Sbjct: 651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEG 710
Query: 711 NQNLVKI 717
+ +++I
Sbjct: 711 DDLILEI 717
>pdb|3V4Z|A Chain A, D-Alanine--D-Alanine Ligase From Yersinia Pestis
pdb|3V4Z|B Chain B, D-Alanine--D-Alanine Ligase From Yersinia Pestis
Length = 309
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 143 EDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF-NDS 201
E + E L+ ++G PL++K G GM V ++ Q+ AF +DS
Sbjct: 126 ETLSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASEL-------QKALVEAFQHDS 178
Query: 202 KVLLEKYIQSPRHIEVQIIGD------RYGNYVYLYERDCSVQRRHQKIIEEAPAPGISS 255
VL+EK++ P V I+GD R Y+ D + P+ G+S
Sbjct: 179 DVLIEKWLSGPE-FTVAILGDEVLPSIRIQPPGVFYDYDAKYLSDKTQYF--CPS-GLSD 234
Query: 256 EFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
E +L + +Q A+ G V+ +M G FY +E+NT
Sbjct: 235 ESEQQLAALALQAYHALDCSGWGRVD-VMQDRDGHFYLLEVNT 276
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 124 TSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSAN 182
T K + KA +PV + QN+E L E + YP ++K GG GKG ++R A+
Sbjct: 109 TEKNAIEKAGLPV--ATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEAD 166
Query: 183 FLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQII 220
E++ N ++ +LEK++ + + V +I
Sbjct: 167 V--------DEARKLANAAECILEKWVPFEKEVSVIVI 196
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 124 TSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSAN 182
T K + KA +PV + QN+E L E + YP ++K GG GKG ++R A+
Sbjct: 115 TEKNAIEKAGLPV--ATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEAD 172
Query: 183 FLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQII 220
E++ N ++ +LEK++ + + V +I
Sbjct: 173 V--------DEARKLANAAECILEKWVPFEKEVSVIVI 202
>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-
Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr,
49 Structures
Length = 87
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 662 KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
K ++ GQ V GD + ++ AMKM I + SG ++ I +GQ ++ ++ LV I
Sbjct: 31 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 86
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 124 TSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSAN 182
T K + KA +PV + QN+E L E + YP ++K GG GKG ++R A+
Sbjct: 115 TEKNAIEKAGLPV--ATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEAD 172
Query: 183 FLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQII 220
E++ N ++ +LEK++ + + V +I
Sbjct: 173 V--------DEARKLANAAECILEKWVPFEKEVSVIVI 202
>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A
Carboxylase Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 662 KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
K ++ GQ V GD + ++ AMKM I + SG ++ I +GQ ++ ++ LV I
Sbjct: 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 79
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 662 KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
K ++ GQ V GD + ++ AMKM I + SG ++ I +GQ ++ ++ LV I
Sbjct: 26 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 81
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 105/263 (39%), Gaps = 25/263 (9%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA-VR 167
+ PS +AIR + K KE + K +P+ + L + E++GYPLM+K+
Sbjct: 111 IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170
Query: 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNY 227
G+G NF + E+ A D + EK+ + +E+ +I + +
Sbjct: 171 AYDGRG--------NFRVNSQDDIPEALEALKDRPLYAEKW--AYFKMELAVIVVKTKDE 220
Query: 228 VYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVE-FIMDP 286
V Y +VQ + APA +S + + A VE F+++
Sbjct: 221 VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLED 280
Query: 287 SSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRI 346
S E+ +R + + I G L Q+ + + +LP+ + L++R S I
Sbjct: 281 DS--IMLCEIASR--IHNSGHYTIEGCALSQFDAHLRAILDLPIPAQSLEIRQPSIMLNI 336
Query: 347 YAENPYEGFLPGAGNLTHLRPPE 369
+ GA THL+ E
Sbjct: 337 ---------IGGAAPDTHLQAAE 350
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 25/268 (9%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA-VR 167
+ PS +AIR + K KE + K +P+ + L + E++GYPLM+K+
Sbjct: 111 IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170
Query: 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNY 227
G+G NF + E+ A D + EK+ + +E+ +I + +
Sbjct: 171 AYDGRG--------NFRVNSQDDIPEALEALKDRPLYAEKW--AYFKMELAVIVVKTKDE 220
Query: 228 VYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVE-FIMDP 286
V Y +VQ + APA +S + + A VE F+++
Sbjct: 221 VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLED 280
Query: 287 SSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRI 346
S E+ +R + + I G L Q+ + + +LP+ + L++R S I
Sbjct: 281 DS--IMLCEIASR--IHNSGHYTIEGCALSQFDAHLRAILDLPIPAQSLEIRQPSIMLNI 336
Query: 347 YAENPYEGFLPGAGNLTHLRPPEHSDTI 374
+ GA THL+ E + +I
Sbjct: 337 ---------IGGAAPDTHLQAAECALSI 355
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+++ GE+ + +++G+ V++V DA A+HV + +L +
Sbjct: 15 VMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELE 74
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
K I + +AI + E N V R + + E IR + ++E+ +
Sbjct: 75 KPHYIV--PEIEAIATDM-LIQLEEEGLNVVPCARATKLTMNREGIRRL----AAEELQL 127
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
Y D +E + E IGYP ++K V GKG +R + + A
Sbjct: 128 PTST-----YRFAD-SESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYA 181
Query: 191 QRESQSAFNDSKVLLEKYIQ 210
Q+ ++ +V++E ++
Sbjct: 182 QQGGRA--GAGRVIVEGVVK 199
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+++ GE+ + +++G+ V++V DA A+HV + +L +
Sbjct: 14 VMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELE 73
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
K I + +AI + E N V R + + E IR + ++E+ +
Sbjct: 74 KPHYIV--PEIEAIATDM-LIQLEEEGLNVVPCARATKLTMNREGIRRL----AAEELQL 126
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
Y D +E + E IGYP ++K V GKG +R + + A
Sbjct: 127 PTST-----YRFAD-SESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYA 180
Query: 191 QRESQSAFNDSKVLLEKYIQ 210
Q+ ++ +V++E ++
Sbjct: 181 QQGGRA--GAGRVIVEGVVK 198
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 111/277 (40%), Gaps = 34/277 (12%)
Query: 99 NAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIG 158
+ E L GP+ EA + G K+ +K M K +P + + E E E++G
Sbjct: 80 DEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPT--ARYEVFTDFEKAKEYVEKVG 137
Query: 159 YPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQ 218
P+++KA GKG + + L + + +V++E++++ +
Sbjct: 138 APIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEGEEASYIV 197
Query: 219 II-GDRYGNYVYLYERDCSVQRRHQKIIEE------------APAPGISSEFRSRLGSTG 265
+I GDRY + H+++++E +P P I+ E R+
Sbjct: 198 MINGDRY--------VPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEI 249
Query: 266 VQ-VARAVR----YHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSE---MITGVDLVQ 317
V+ V + ++ Y+ +M G +E N RL P ++ M D ++
Sbjct: 250 VERVIKGLKEEGIYYRGFLYAGLMITKEGP-KVLEFNVRLG--DPEAQPILMRVKNDFLE 306
Query: 318 WQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEG 354
L G+++ +K+++ +R Y E P G
Sbjct: 307 TLLNFYEGKDVHIKEDERYALDVVLASRGYPEKPETG 343
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLV 715
M G + KV V+ G ++ G + ++ +MKME I + SGI++E+ G + + L+
Sbjct: 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLL 65
Query: 716 KIVPS 720
++ S
Sbjct: 66 ELSNS 70
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 101 VEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP 160
EG R+ GPS A G K+ +KE+M K +P H + E E+ G P
Sbjct: 105 AEGLRIF--GPSQRAALIEGSKAFAKELMKKYGIPTAD--HAAFTSYEEAKAYIEQKGAP 160
Query: 161 LMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQS 211
++IKA GKG+ + + LA ++A + Q S+V++E+Y++
Sbjct: 161 IVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG 211
>pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
Length = 373
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 152 EQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQS 211
++ ER+G P+ +K RGG G+ V A + A+R +D KV++E I S
Sbjct: 182 QECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARR------HDPKVIVEAAI-S 234
Query: 212 PRHIEVQII 220
R +E ++
Sbjct: 235 GRELECGVL 243
>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
Length = 367
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 11/138 (7%)
Query: 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNE 147
+G L E+ + L FVG + K +K ++ A + + P N
Sbjct: 110 HGTLGEDGSLQGXLRVANLPFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNR 169
Query: 148 EIL--MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFN-DSKVL 204
E R+G PL +K G G+ V + A + Q+ AF D KV+
Sbjct: 170 HAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQY-------QQAVALAFEFDHKVV 222
Query: 205 LEKYIQSPRHIEVQIIGD 222
+E+ I+ R IE ++G+
Sbjct: 223 VEQGIKG-REIECAVLGN 239
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 11/138 (7%)
Query: 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNE 147
+G L E+ + L FVG + K +K ++ A + + P N
Sbjct: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNR 166
Query: 148 EIL--MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFN-DSKVL 204
E R+G PL +K G G+ V + A + Q+ AF D KV+
Sbjct: 167 HAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQY-------QQAVALAFEFDHKVV 219
Query: 205 LEKYIQSPRHIEVQIIGD 222
+E+ I+ R IE ++G+
Sbjct: 220 VEQGIKG-REIECAVLGN 236
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 31/225 (13%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
IL A RG++ + + AK++GI ++ + +A + +ADE + S+ D +
Sbjct: 12 ILGAGRGQLG--LYKAAKELGIHTIA-GTXPNAHKPCLNLADEISYXD-ISNPDEVEQKV 67
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
K L++ + C + G L+ + N VG + EA G K KE
Sbjct: 68 KDLNLDGAATC-CLDTGIVSLARICDKEN--------LVGLNEEAAIXCGDKYKXKEAFK 118
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
K V + ++NE L E + P+++KA G KG+ I +
Sbjct: 119 KYNVNTARHFVVRNENE--LKNALENLKLPVIVKATDLQGSKGIYIAK-----------K 165
Query: 191 QRESQSAFNDSKVLLEK-YIQSPRHIEVQIIGDRYGNYVYLYERD 234
+ E+ FN++ L ++ Y IE G +G ++Y+ D
Sbjct: 166 EEEAIDGFNETXNLTKRDYCIVEEFIE----GYEFGAQAFVYKND 206
>pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
pdb|4FU0|B Chain B, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
Length = 357
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 146 NEEILMEQAE-RIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVL 204
NEE M++ E + YPL IK VR G G+ V + A + A +D++V+
Sbjct: 164 NEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE------HDTEVI 217
Query: 205 LEKYIQ------SPRHIEVQIIG--DRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSE 256
+E+ I + I+ I+G D ++ + KI PA I +E
Sbjct: 218 VEETINGFEVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIY--MPAR-IDAE 274
Query: 257 FRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
R+ V + +A+ V+ P SGE F E+NT
Sbjct: 275 AEKRIQEAAVTIYKALGCSGFSRVDMFYTP-SGEIVFNEVNT 315
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 596 GYELVAEGEKGRIRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSALSDPSKVVSP 655
GY+ + +G K R VCL G F + GSY+F G + + + E + +P ++ P
Sbjct: 1290 GYDTIMQG-KAR-----VCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRP 1343
Query: 656 MP----------GMVDKVLVQPGQAVKTGDPIMVIIAM 683
G +V++ A++ G PI I+AM
Sbjct: 1344 TSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAM 1381
>pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
Length = 319
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K SK ++ +A VPV+P + + E ++ +K G G+ V
Sbjct: 116 KDLSKRVLAQAGVPVVP-WVAVRKGEPPVVPFDPPF----FVKPANTGSSVGISRVERFQ 170
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD-----------RYGNYVYL 230
+ A L A R D K ++EK + R +EV ++G+ RY Y
Sbjct: 171 DLEAALALAFR------YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYD 224
Query: 231 YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGE 290
YE + R I PAP + + + ++ + + V+F + + GE
Sbjct: 225 YETKYTPGRAELLI----PAP-LDPGTQETVQELALKAYKVLGVRGXARVDFFL--AEGE 277
Query: 291 FYFMEMNT 298
Y E+NT
Sbjct: 278 LYLNELNT 285
>pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
Length = 319
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K SK ++ +A VPV+P + + E ++ +K G G+ V
Sbjct: 116 KDLSKRVLAQAGVPVVP-WVAVRKGEPPVVPFDPPF----FVKPANTGSSVGISRVERFQ 170
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD-----------RYGNYVYL 230
+ A L A R D K ++EK + R +EV ++G+ RY Y
Sbjct: 171 DLEAALALAFR------YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYD 224
Query: 231 YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGE 290
YE + R I PAP + + + ++ + + V+F + + GE
Sbjct: 225 YETKYTPGRAELLI----PAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGE 277
Query: 291 FYFMEMNT 298
Y E+NT
Sbjct: 278 LYLNELNT 285
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 110 GPSSEAIRNMGIKSTSKEIMIKAEVPVIP--GYHGEDQNEEILMEQAERIGYPLMIKAVR 167
GPS A G K +K++M K ++P + D+ + + E+ G P++IKA
Sbjct: 91 GPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEK----GAPIVIKADG 146
Query: 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYI 209
GKG+ + +A L + + + V++E+Y+
Sbjct: 147 LAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYL 188
>pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-alanine: D-alanine
Ligase (ddl) From Thermus Caldophilus: A Basis For The
Substrate-induced Conformational Changes
Length = 322
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K SK ++ +A VPV+P + + E ++ +K G G+ V
Sbjct: 119 KDLSKRVLAQAGVPVVP-WVAVRKGEPPVVPFDPPF----FVKPANTGSSVGISRVERFQ 173
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD-----------RYGNYVYL 230
+ A L A R D K ++EK + R +EV ++G+ RY Y
Sbjct: 174 DLEAALALAFR------YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYD 227
Query: 231 YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGE 290
YE + R I PAP + + + ++ + + V+F + + GE
Sbjct: 228 YETKYTPGRAELLI----PAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGE 280
Query: 291 FYFMEMNT 298
Y E+NT
Sbjct: 281 LYLNELNT 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,320,305
Number of Sequences: 62578
Number of extensions: 826053
Number of successful extensions: 2369
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2147
Number of HSP's gapped (non-prelim): 112
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)