Query psy15251
Match_columns 720
No_of_seqs 639 out of 4679
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:14:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 3E-149 6E-154 1184.8 60.3 644 7-719 1-645 (645)
2 KOG0238|consensus 100.0 8E-143 2E-147 1115.2 58.9 665 11-718 1-670 (670)
3 COG1038 PycA Pyruvate carboxyl 100.0 1E-110 2E-115 910.3 63.6 445 6-452 5-457 (1149)
4 KOG0369|consensus 100.0 1E-101 3E-106 823.0 59.9 443 8-452 33-480 (1176)
5 KOG0368|consensus 100.0 1.2E-95 3E-100 825.6 53.6 643 6-718 52-753 (2196)
6 COG0439 AccC Biotin carboxylas 100.0 1.1E-95 2E-100 792.5 48.5 446 7-454 1-446 (449)
7 TIGR01235 pyruv_carbox pyruvat 100.0 3.6E-93 7.8E-98 853.0 68.0 450 10-462 1-460 (1143)
8 PRK08654 pyruvate carboxylase 100.0 2.6E-92 5.5E-97 793.0 54.2 443 7-452 1-443 (499)
9 PRK12999 pyruvate carboxylase; 100.0 1.1E-88 2.3E-93 819.0 75.4 445 6-452 3-455 (1146)
10 PRK07178 pyruvate carboxylase 100.0 5.6E-87 1.2E-91 750.1 56.1 449 7-459 1-449 (472)
11 PRK08463 acetyl-CoA carboxylas 100.0 1E-85 2.2E-90 740.5 55.7 450 7-459 1-451 (478)
12 PRK12833 acetyl-CoA carboxylas 100.0 7.5E-86 1.6E-90 740.0 53.3 450 6-457 3-452 (467)
13 PRK05586 biotin carboxylase; V 100.0 7.5E-81 1.6E-85 697.9 52.0 445 7-453 1-445 (447)
14 TIGR00514 accC acetyl-CoA carb 100.0 1.2E-79 2.5E-84 689.1 53.6 446 7-454 1-446 (449)
15 PRK08462 biotin carboxylase; V 100.0 1.1E-77 2.5E-82 673.0 53.6 444 6-453 2-445 (445)
16 PRK08591 acetyl-CoA carboxylas 100.0 2E-76 4.4E-81 664.6 52.8 447 7-455 1-447 (451)
17 TIGR02712 urea_carbox urea car 100.0 9.5E-74 2.1E-78 693.3 54.0 441 8-452 1-443 (1201)
18 PRK06111 acetyl-CoA carboxylas 100.0 2.4E-66 5.1E-71 583.2 53.1 445 7-454 1-445 (450)
19 TIGR01369 CPSaseII_lrg carbamo 100.0 1.1E-43 2.4E-48 431.7 44.9 378 6-422 4-405 (1050)
20 PF02786 CPSase_L_D2: Carbamoy 100.0 1.6E-44 3.5E-49 360.9 23.9 209 121-329 1-209 (211)
21 PLN02735 carbamoyl-phosphate s 100.0 6.7E-43 1.5E-47 422.9 39.3 323 7-346 573-924 (1102)
22 PLN02735 carbamoyl-phosphate s 100.0 2.4E-42 5.3E-47 418.0 43.3 380 7-423 22-425 (1102)
23 TIGR01142 purT phosphoribosylg 100.0 1.4E-41 3E-46 374.1 44.4 379 10-421 1-380 (380)
24 PLN02948 phosphoribosylaminoim 100.0 1.3E-41 2.8E-46 387.5 43.9 380 6-421 20-402 (577)
25 PRK06019 phosphoribosylaminoim 100.0 1.6E-40 3.4E-45 363.5 42.9 362 8-416 2-366 (372)
26 PRK09288 purT phosphoribosylgl 100.0 7.5E-40 1.6E-44 362.2 44.1 382 8-422 12-394 (395)
27 PRK05294 carB carbamoyl phosph 100.0 3.9E-40 8.4E-45 402.2 43.5 400 1-438 1-429 (1066)
28 TIGR01161 purK phosphoribosyla 100.0 1.1E-38 2.4E-43 347.1 40.7 349 10-403 1-352 (352)
29 PRK12815 carB carbamoyl phosph 100.0 1.3E-38 2.8E-43 387.4 43.4 395 7-438 6-429 (1068)
30 PRK07206 hypothetical protein; 100.0 1.7E-38 3.6E-43 353.8 39.3 381 7-415 1-405 (416)
31 PRK02186 argininosuccinate lya 100.0 4.6E-37 9.9E-42 369.4 45.4 381 8-421 2-395 (887)
32 PRK00885 phosphoribosylamine-- 100.0 6E-37 1.3E-41 341.3 39.6 385 10-429 2-415 (420)
33 PRK13789 phosphoribosylamine-- 100.0 1.5E-36 3.2E-41 335.9 42.2 385 8-423 4-415 (426)
34 TIGR01369 CPSaseII_lrg carbamo 100.0 4.5E-37 9.8E-42 373.9 41.1 304 8-329 554-870 (1050)
35 TIGR00877 purD phosphoribosyla 100.0 5.3E-36 1.1E-40 334.3 41.7 389 10-428 2-418 (423)
36 COG0458 CarB Carbamoylphosphat 100.0 3.1E-36 6.7E-41 316.1 37.0 375 10-417 7-389 (400)
37 PLN02257 phosphoribosylamine-- 100.0 9.7E-36 2.1E-40 329.5 41.1 388 12-429 1-422 (434)
38 PRK12815 carB carbamoyl phosph 100.0 6.6E-36 1.4E-40 363.8 41.0 361 7-416 554-931 (1068)
39 PRK05294 carB carbamoyl phosph 100.0 7.7E-36 1.7E-40 364.5 40.0 306 7-330 553-871 (1066)
40 PRK06395 phosphoribosylamine-- 100.0 2E-35 4.3E-40 327.8 39.1 384 9-428 3-418 (435)
41 PRK13790 phosphoribosylamine-- 100.0 7E-35 1.5E-39 319.1 36.2 340 65-429 12-373 (379)
42 PRK05784 phosphoribosylamine-- 100.0 5.9E-34 1.3E-38 318.1 40.0 379 10-423 2-435 (486)
43 COG0027 PurT Formate-dependent 100.0 6.3E-34 1.4E-38 284.2 33.6 382 7-422 11-394 (394)
44 PRK12767 carbamoyl phosphate s 100.0 2.8E-34 6E-39 309.6 33.7 294 8-330 1-299 (326)
45 COG0026 PurK Phosphoribosylami 100.0 8.2E-32 1.8E-36 279.5 38.1 362 8-415 1-365 (375)
46 COG0151 PurD Phosphoribosylami 100.0 6.4E-31 1.4E-35 276.5 37.6 374 10-423 2-412 (428)
47 PRK06524 biotin carboxylase-li 100.0 6.4E-31 1.4E-35 287.4 32.7 249 70-331 94-358 (493)
48 PF15632 ATPgrasp_Ter: ATP-gra 100.0 9.9E-31 2.1E-35 275.4 30.8 295 12-331 2-311 (329)
49 PRK01966 ddl D-alanyl-alanine 100.0 9.6E-31 2.1E-35 282.1 28.2 298 8-322 3-327 (333)
50 PRK14569 D-alanyl-alanine synt 100.0 4.9E-30 1.1E-34 272.1 31.2 272 9-323 4-292 (296)
51 PRK06849 hypothetical protein; 100.0 1.5E-30 3.4E-35 287.0 27.2 278 7-308 3-284 (389)
52 PRK01372 ddl D-alanine--D-alan 100.0 2E-29 4.3E-34 269.1 31.2 273 7-322 3-296 (304)
53 TIGR01205 D_ala_D_alaTIGR D-al 100.0 4.6E-29 9.9E-34 267.7 29.9 274 20-323 20-312 (315)
54 PRK14568 vanB D-alanine--D-lac 100.0 3.8E-29 8.2E-34 270.8 28.2 294 9-321 4-335 (343)
55 PF02785 Biotin_carb_C: Biotin 100.0 3.1E-31 6.8E-36 233.7 9.2 107 343-450 1-107 (107)
56 PRK14572 D-alanyl-alanine synt 100.0 1.1E-28 2.3E-33 267.6 30.2 304 9-322 2-341 (347)
57 PRK14570 D-alanyl-alanine synt 100.0 2.3E-28 5.1E-33 265.0 30.0 302 8-321 2-341 (364)
58 smart00878 Biotin_carb_C Bioti 100.0 5.4E-30 1.2E-34 226.5 10.5 107 343-450 1-107 (107)
59 PRK14571 D-alanyl-alanine synt 100.0 9E-27 1.9E-31 247.9 29.9 260 20-324 21-296 (299)
60 PRK14573 bifunctional D-alanyl 100.0 1.7E-26 3.7E-31 276.3 31.7 299 8-322 451-782 (809)
61 COG2232 Predicted ATP-dependen 99.9 4.8E-26 1E-30 229.5 25.7 349 8-417 11-371 (389)
62 KOG0370|consensus 99.9 5.5E-27 1.2E-31 260.1 13.2 377 7-424 376-776 (1435)
63 KOG0370|consensus 99.9 4.7E-25 1E-29 244.8 25.5 304 8-331 918-1236(1435)
64 PRK10446 ribosomal protein S6 99.9 3.5E-24 7.5E-29 228.0 26.4 277 10-326 2-289 (300)
65 TIGR00768 rimK_fam alpha-L-glu 99.9 2.3E-24 5E-29 226.7 24.4 266 16-322 9-276 (277)
66 PF13535 ATP-grasp_4: ATP-gras 99.9 1.8E-24 3.9E-29 213.0 18.4 177 118-304 1-183 (184)
67 PRK13278 purP 5-formaminoimida 99.9 3.6E-23 7.9E-28 221.5 29.6 266 10-302 20-314 (358)
68 KOG0237|consensus 99.9 1.2E-22 2.5E-27 217.4 32.6 390 9-429 3-424 (788)
69 TIGR02144 LysX_arch Lysine bio 99.9 6.1E-23 1.3E-27 216.5 27.3 265 18-324 10-276 (280)
70 PRK13277 5-formaminoimidazole- 99.9 1.1E-22 2.5E-27 213.9 26.3 295 10-329 19-349 (366)
71 PF00289 CPSase_L_chain: Carba 99.9 2.9E-24 6.2E-29 191.8 11.0 110 7-116 1-110 (110)
72 TIGR03103 trio_acet_GNAT GNAT- 99.9 1.3E-22 2.7E-27 231.1 15.5 269 26-324 206-541 (547)
73 PF02222 ATP-grasp: ATP-grasp 99.9 3.1E-21 6.8E-26 186.2 19.0 163 129-304 1-165 (172)
74 COG1181 DdlA D-alanine-D-alani 99.9 2.5E-20 5.4E-25 197.1 27.6 282 9-322 3-312 (317)
75 PF07478 Dala_Dala_lig_C: D-al 99.9 1E-20 2.2E-25 189.0 19.8 186 128-322 1-201 (203)
76 PRK14016 cyanophycin synthetas 99.9 2.5E-21 5.5E-26 227.4 17.9 256 40-324 141-472 (727)
77 COG3919 Predicted ATP-grasp en 99.9 1.9E-20 4.1E-25 186.1 18.4 293 10-326 5-313 (415)
78 PF01071 GARS_A: Phosphoribosy 99.8 1.5E-19 3.3E-24 176.1 16.7 169 120-301 1-190 (194)
79 COG0511 AccB Biotin carboxyl c 99.8 1.7E-20 3.6E-25 175.2 9.1 72 648-719 69-140 (140)
80 PF02655 ATP-grasp_3: ATP-gras 99.8 2.2E-19 4.8E-24 173.2 10.1 158 119-303 1-161 (161)
81 COG0189 RimK Glutathione synth 99.8 1.5E-17 3.1E-22 176.5 24.2 288 18-323 17-311 (318)
82 PF08443 RimK: RimK-like ATP-g 99.8 4.2E-18 9E-23 169.0 15.3 182 120-322 2-189 (190)
83 PRK05641 putative acetyl-CoA c 99.8 2.6E-17 5.6E-22 154.8 17.5 146 549-717 3-152 (153)
84 PRK05889 putative acetyl-CoA c 99.7 1.1E-17 2.4E-22 138.0 9.9 69 650-718 3-71 (71)
85 COG1821 Predicted ATP-utilizin 99.7 1.7E-15 3.6E-20 148.6 18.6 212 71-329 66-285 (307)
86 PRK12458 glutathione synthetas 99.7 2.6E-15 5.7E-20 161.7 21.3 278 16-324 9-322 (338)
87 PRK06748 hypothetical protein; 99.7 3.6E-16 7.9E-21 130.5 9.9 69 651-719 6-75 (83)
88 PRK06549 acetyl-CoA carboxylas 99.7 3.6E-16 7.7E-21 142.5 10.4 70 648-717 60-129 (130)
89 PRK08225 acetyl-CoA carboxylas 99.7 3E-16 6.5E-21 129.2 9.0 68 651-718 3-70 (70)
90 PF00364 Biotin_lipoyl: Biotin 99.6 5.1E-16 1.1E-20 129.1 8.1 67 651-717 2-74 (74)
91 TIGR02068 cya_phycin_syn cyano 99.6 1E-14 2.2E-19 175.0 22.5 201 111-324 203-471 (864)
92 TIGR01435 glu_cys_lig_rel glut 99.6 2.2E-14 4.7E-19 165.7 20.9 199 111-322 465-735 (737)
93 PRK02471 bifunctional glutamat 99.6 4.5E-14 9.7E-19 165.7 23.7 199 111-322 478-749 (752)
94 PLN02941 inositol-tetrakisphos 99.6 9.4E-14 2E-18 147.2 22.4 181 98-301 85-305 (328)
95 PRK14042 pyruvate carboxylase 99.6 1.4E-14 2.9E-19 164.3 16.7 74 647-720 523-596 (596)
96 TIGR00531 BCCP acetyl-CoA carb 99.6 4.7E-15 1E-19 140.9 9.1 70 649-718 80-156 (156)
97 PRK07051 hypothetical protein; 99.6 1.1E-14 2.3E-19 123.0 9.9 70 650-719 4-80 (80)
98 PLN02983 biotin carboxyl carri 99.6 1.1E-14 2.4E-19 144.9 10.5 72 648-719 196-274 (274)
99 TIGR01380 glut_syn glutathione 99.6 5.5E-13 1.2E-17 142.5 23.9 277 19-323 19-308 (312)
100 PRK05246 glutathione synthetas 99.5 7.4E-13 1.6E-17 142.0 23.9 273 18-325 19-311 (316)
101 TIGR02712 urea_carbox urea car 99.5 2.8E-16 6.2E-21 192.4 -4.3 143 566-718 1059-1201(1201)
102 COG1759 5-formaminoimidazole-4 99.5 1.4E-12 3.1E-17 132.2 21.0 265 16-303 25-318 (361)
103 PRK06302 acetyl-CoA carboxylas 99.5 4.4E-14 9.6E-19 134.2 9.6 70 649-718 79-155 (155)
104 TIGR02291 rimK_rel_E_lig alpha 99.5 1.9E-12 4.2E-17 136.3 19.8 205 111-324 27-293 (317)
105 PRK09282 pyruvate carboxylase 99.5 6.5E-13 1.4E-17 151.9 16.4 73 647-719 520-592 (592)
106 PRK14040 oxaloacetate decarbox 99.5 4E-13 8.7E-18 153.2 13.0 71 648-718 523-593 (593)
107 cd06850 biotinyl_domain The bi 99.4 3.3E-13 7.1E-18 109.9 8.9 66 652-717 2-67 (67)
108 TIGR01108 oadA oxaloacetate de 99.4 3.2E-13 7E-18 153.9 12.1 68 647-714 515-582 (582)
109 cd06663 Biotinyl_lipoyl_domain 99.3 1E-11 2.2E-16 103.1 8.9 61 657-717 13-73 (73)
110 PLN02226 2-oxoglutarate dehydr 99.3 6E-12 1.3E-16 138.1 9.0 64 656-719 104-167 (463)
111 PTZ00144 dihydrolipoamide succ 99.2 1.4E-11 3E-16 134.3 9.2 64 656-719 57-120 (418)
112 PRK14875 acetoin dehydrogenase 99.2 2E-11 4.3E-16 133.8 9.4 64 656-719 15-78 (371)
113 PRK05704 dihydrolipoamide succ 99.1 1.4E-10 3E-15 127.4 9.1 64 656-719 15-78 (407)
114 PF14398 ATPgrasp_YheCD: YheC/ 99.0 1.2E-08 2.5E-13 106.4 18.3 182 101-302 4-235 (262)
115 TIGR01347 sucB 2-oxoglutarate 99.0 6.3E-10 1.4E-14 122.0 9.3 64 656-719 13-76 (403)
116 PRK00696 sucC succinyl-CoA syn 99.0 1.5E-08 3.2E-13 111.9 19.3 109 121-231 4-125 (388)
117 PRK11854 aceF pyruvate dehydro 99.0 9.2E-10 2E-14 128.1 9.1 64 656-719 13-76 (633)
118 PF14397 ATPgrasp_ST: Sugar-tr 99.0 3.9E-08 8.4E-13 103.6 19.9 187 111-301 16-259 (285)
119 TIGR01016 sucCoAbeta succinyl- 99.0 2.9E-08 6.4E-13 109.5 19.8 102 121-224 4-117 (386)
120 PRK11854 aceF pyruvate dehydro 99.0 1.1E-09 2.3E-14 127.5 8.5 65 655-719 216-280 (633)
121 COG0508 AceF Pyruvate/2-oxoglu 98.9 1.7E-09 3.6E-14 118.8 8.4 63 657-719 16-78 (404)
122 PLN02528 2-oxoisovalerate dehy 98.9 3.9E-09 8.5E-14 116.5 9.2 62 657-718 12-73 (416)
123 TIGR01348 PDHac_trf_long pyruv 98.9 3.6E-09 7.8E-14 120.8 8.2 64 656-719 128-191 (546)
124 TIGR02927 SucB_Actino 2-oxoglu 98.8 6.1E-09 1.3E-13 119.9 9.0 65 655-719 147-211 (590)
125 TIGR01348 PDHac_trf_long pyruv 98.8 6E-09 1.3E-13 119.0 8.8 65 655-719 11-75 (546)
126 cd06849 lipoyl_domain Lipoyl d 98.8 2.7E-08 5.9E-13 81.3 8.7 64 654-717 11-74 (74)
127 PRK11855 dihydrolipoamide acet 98.8 1.2E-08 2.5E-13 117.3 8.6 63 657-719 132-194 (547)
128 PF13549 ATP-grasp_5: ATP-gras 98.8 4.5E-08 9.7E-13 98.8 11.0 174 120-300 10-207 (222)
129 PRK11855 dihydrolipoamide acet 98.7 3.8E-08 8.2E-13 113.1 8.9 64 656-719 14-77 (547)
130 PRK11856 branched-chain alpha- 98.6 8.7E-08 1.9E-12 106.6 9.2 64 656-719 15-78 (411)
131 TIGR01349 PDHac_trf_mito pyruv 98.6 7.5E-08 1.6E-12 107.0 8.6 63 656-718 12-75 (435)
132 PRK11892 pyruvate dehydrogenas 98.5 1.5E-07 3.3E-12 104.9 8.3 63 657-719 16-79 (464)
133 PLN02744 dihydrolipoyllysine-r 98.5 2.2E-07 4.7E-12 104.7 8.3 63 656-718 125-188 (539)
134 KOG0559|consensus 98.5 6.5E-08 1.4E-12 99.5 3.1 64 656-719 85-148 (457)
135 TIGR02927 SucB_Actino 2-oxoglu 98.5 2.7E-07 5.9E-12 106.4 8.2 63 656-718 15-77 (590)
136 COG0045 SucC Succinyl-CoA synt 98.5 2.8E-06 6E-11 90.0 14.9 107 122-230 5-121 (387)
137 PRK13380 glycine cleavage syst 98.4 5.1E-07 1.1E-11 84.5 5.6 55 652-706 38-93 (144)
138 PLN00124 succinyl-CoA ligase [ 98.3 1.9E-05 4.2E-10 87.1 17.9 100 121-223 31-151 (422)
139 PRK14046 malate--CoA ligase su 98.3 2.4E-05 5.2E-10 86.1 18.6 108 122-231 5-125 (392)
140 PF02955 GSH-S_ATP: Prokaryoti 98.3 3E-06 6.4E-11 82.1 10.1 141 136-298 12-160 (173)
141 PRK09783 copper/silver efflux 98.3 2.1E-06 4.7E-11 95.3 9.4 70 650-719 124-242 (409)
142 cd06848 GCS_H Glycine cleavage 98.3 1.9E-06 4.2E-11 75.4 6.6 54 654-707 25-79 (96)
143 TIGR00998 8a0101 efflux pump m 98.2 3E-06 6.5E-11 91.8 7.8 33 687-719 205-237 (334)
144 PF08442 ATP-grasp_2: ATP-gras 98.2 3.3E-06 7E-11 84.0 7.2 104 122-227 4-119 (202)
145 PRK01202 glycine cleavage syst 98.2 1.3E-05 2.9E-10 73.7 10.0 66 654-719 33-106 (127)
146 PRK10476 multidrug resistance 98.1 4.2E-06 9.1E-11 91.2 7.5 33 650-682 49-81 (346)
147 PF05770 Ins134_P3_kin: Inosit 98.1 2.1E-05 4.6E-10 82.8 12.3 174 105-301 78-290 (307)
148 PRK12784 hypothetical protein; 98.1 9.8E-06 2.1E-10 65.0 7.3 69 651-719 7-76 (84)
149 TIGR03077 not_gcvH glycine cle 98.1 4.2E-06 9.1E-11 74.6 5.9 51 656-706 28-79 (110)
150 KOG0557|consensus 98.1 4.4E-06 9.5E-11 89.9 7.0 63 657-719 52-115 (470)
151 PRK10559 p-hydroxybenzoic acid 98.1 4.8E-06 1E-10 89.1 7.3 68 651-718 49-186 (310)
152 TIGR01730 RND_mfp RND family e 98.0 7.9E-06 1.7E-10 87.8 6.9 70 650-719 27-167 (322)
153 PLN02235 ATP citrate (pro-S)-l 98.0 0.00042 9.1E-09 75.7 19.4 106 122-229 8-131 (423)
154 PRK15136 multidrug efflux syst 98.0 1.2E-05 2.5E-10 89.0 7.6 33 687-719 216-248 (390)
155 PRK03598 putative efflux pump 98.0 1.1E-05 2.5E-10 87.2 7.3 33 687-719 204-236 (331)
156 PF13533 Biotin_lipoyl_2: Biot 98.0 7.4E-06 1.6E-10 62.4 4.1 34 651-684 4-37 (50)
157 PF14305 ATPgrasp_TupA: TupA-l 98.0 0.00022 4.8E-09 73.2 16.0 177 116-303 15-221 (239)
158 PRK09578 periplasmic multidrug 97.9 2.3E-05 5E-10 86.7 7.1 68 651-718 65-205 (385)
159 PRK00624 glycine cleavage syst 97.9 3E-05 6.5E-10 69.5 6.4 48 656-703 30-78 (114)
160 TIGR00527 gcvH glycine cleavag 97.8 2.8E-05 6E-10 71.5 6.0 51 654-704 32-83 (127)
161 PRK15030 multidrug efflux syst 97.8 3.3E-05 7.2E-10 85.7 7.5 68 651-718 67-207 (397)
162 PRK09859 multidrug efflux syst 97.8 4.2E-05 9.2E-10 84.5 7.2 68 651-718 63-203 (385)
163 TIGR03309 matur_yqeB selenium- 97.8 9E-05 1.9E-09 75.0 8.5 65 649-719 164-228 (256)
164 KOG0558|consensus 97.7 2.4E-05 5.2E-10 80.5 3.1 61 658-718 79-139 (474)
165 PRK11578 macrolide transporter 97.7 6.4E-05 1.4E-09 82.7 6.8 68 651-718 63-218 (370)
166 PRK11556 multidrug efflux syst 97.7 6.4E-05 1.4E-09 83.8 6.8 69 650-718 88-229 (415)
167 PF13533 Biotin_lipoyl_2: Biot 97.6 0.0001 2.2E-09 56.1 4.8 33 687-719 3-35 (50)
168 PF02750 Synapsin_C: Synapsin, 97.6 0.0035 7.6E-08 60.7 15.7 164 112-299 2-177 (203)
169 PF02844 GARS_N: Phosphoribosy 97.5 0.00046 9.9E-09 60.3 8.1 96 10-118 2-99 (100)
170 PF12700 HlyD_2: HlyD family s 97.4 0.0001 2.2E-09 79.4 3.3 31 651-682 23-53 (328)
171 TIGR02971 heterocyst_DevB ABC 97.4 0.00037 8.1E-09 75.3 7.4 32 651-682 15-49 (327)
172 TIGR01843 type_I_hlyD type I s 97.2 0.00076 1.7E-08 75.4 7.7 32 650-681 44-75 (423)
173 PF01597 GCV_H: Glycine cleava 97.1 0.0012 2.7E-08 60.3 6.4 47 657-703 30-77 (122)
174 PF03133 TTL: Tubulin-tyrosine 97.1 0.0042 9.1E-08 66.0 11.4 43 160-211 67-109 (292)
175 PF14403 CP_ATPgrasp_2: Circul 97.0 0.0047 1E-07 68.4 11.3 169 22-222 204-395 (445)
176 PF06849 DUF1246: Protein of u 96.9 0.0011 2.5E-08 59.2 4.2 115 17-140 6-123 (124)
177 COG1566 EmrA Multidrug resista 96.8 0.0029 6.3E-08 68.1 7.1 33 687-719 209-241 (352)
178 PF11379 DUF3182: Protein of u 96.7 0.03 6.5E-07 58.8 13.8 154 74-240 59-214 (355)
179 PRK05889 putative acetyl-CoA c 96.7 0.0023 5.1E-08 52.5 4.5 33 687-719 3-35 (71)
180 COG0509 GcvH Glycine cleavage 96.7 0.0031 6.7E-08 57.3 5.4 48 656-703 37-85 (131)
181 cd06253 M14_ASTE_ASPA_like_3 A 96.6 0.0081 1.8E-07 63.9 8.7 66 649-717 229-297 (298)
182 PF13375 RnfC_N: RnfC Barrel s 96.5 0.0034 7.4E-08 55.2 4.7 41 661-702 42-82 (101)
183 PRK08225 acetyl-CoA carboxylas 96.5 0.0028 6.2E-08 51.8 4.0 32 650-681 39-70 (70)
184 cd06252 M14_ASTE_ASPA_like_2 A 96.5 0.01 2.2E-07 63.8 9.2 67 650-719 245-315 (316)
185 PF06973 DUF1297: Domain of un 96.4 0.012 2.7E-07 56.3 7.9 100 201-303 21-145 (188)
186 KOG3895|consensus 96.4 0.023 4.9E-07 59.4 10.3 196 77-298 152-365 (488)
187 cd06251 M14_ASTE_ASPA_like_1 A 96.4 0.012 2.6E-07 62.3 8.7 65 650-717 220-286 (287)
188 TIGR02994 ectoine_eutE ectoine 96.3 0.013 2.8E-07 63.0 8.7 65 650-717 256-324 (325)
189 PRK07051 hypothetical protein; 96.3 0.0052 1.1E-07 51.8 4.5 32 650-681 48-79 (80)
190 PRK06748 hypothetical protein; 96.2 0.0098 2.1E-07 50.1 5.3 33 687-719 5-37 (83)
191 COG3608 Predicted deacylase [G 96.1 0.016 3.4E-07 61.4 7.5 66 649-717 256-324 (331)
192 cd06250 M14_PaAOTO_like An unc 96.1 0.02 4.3E-07 62.5 8.5 66 649-717 289-358 (359)
193 COG0511 AccB Biotin carboxyl c 96.0 0.0064 1.4E-07 57.0 3.7 33 650-682 108-140 (140)
194 PRK09282 pyruvate carboxylase 96.0 0.11 2.5E-06 60.3 14.7 118 547-681 465-591 (592)
195 PRK09439 PTS system glucose-sp 95.7 0.022 4.7E-07 54.9 5.9 20 699-718 105-124 (169)
196 cd06254 M14_ASTE_ASPA_like_4 A 95.6 0.032 7E-07 59.1 7.6 64 648-714 222-287 (288)
197 PF00364 Biotin_lipoyl: Biotin 95.5 0.016 3.4E-07 48.1 3.9 31 650-680 44-74 (74)
198 cd00210 PTS_IIA_glc PTS_IIA, P 95.5 0.031 6.7E-07 51.1 6.0 62 649-718 35-102 (124)
199 cd06850 biotinyl_domain The bi 95.5 0.019 4.1E-07 45.9 4.2 31 689-719 2-32 (67)
200 PF13437 HlyD_3: HlyD family s 95.3 0.041 9E-07 48.6 6.1 33 651-683 1-33 (105)
201 PF13380 CoA_binding_2: CoA bi 95.1 0.099 2.1E-06 47.4 8.0 98 9-114 1-111 (116)
202 TIGR01235 pyruv_carbox pyruvat 95.0 0.093 2E-06 65.4 9.8 72 647-718 1072-1143(1143)
203 PRK08057 cobalt-precorrin-6x r 94.9 0.28 6E-06 50.7 11.8 93 7-109 1-96 (248)
204 PF05896 NQRA: Na(+)-transloca 94.8 0.042 9E-07 56.3 5.1 48 652-702 32-81 (257)
205 PRK06549 acetyl-CoA carboxylas 94.7 0.046 1E-06 50.3 4.8 34 686-719 61-94 (130)
206 COG2190 NagE Phosphotransferas 94.7 0.071 1.5E-06 50.3 5.9 63 648-718 41-109 (156)
207 PF14243 DUF4343: Domain of un 94.5 0.61 1.3E-05 43.1 11.8 115 159-301 2-117 (130)
208 PF09891 DUF2118: Uncharacteri 94.4 0.053 1.1E-06 50.9 4.4 51 651-701 82-133 (150)
209 TIGR00715 precor6x_red precorr 94.2 0.4 8.7E-06 49.8 10.8 93 10-109 2-96 (256)
210 PRK05641 putative acetyl-CoA c 94.1 0.066 1.4E-06 50.9 4.4 33 687-719 85-117 (153)
211 PF00529 HlyD: HlyD family sec 94.0 0.034 7.5E-07 59.0 2.8 32 651-682 3-34 (305)
212 PRK14042 pyruvate carboxylase 94.0 0.69 1.5E-05 53.7 13.3 34 649-682 562-595 (596)
213 TIGR01936 nqrA NADH:ubiquinone 93.8 0.074 1.6E-06 59.5 5.0 47 654-701 34-80 (447)
214 COG2099 CobK Precorrin-6x redu 93.7 0.84 1.8E-05 46.6 11.8 121 8-158 2-128 (257)
215 cd06255 M14_ASTE_ASPA_like_5 A 93.5 0.21 4.5E-06 53.1 7.5 51 649-700 231-283 (293)
216 PRK06302 acetyl-CoA carboxylas 93.4 0.086 1.9E-06 50.3 4.0 32 650-681 124-155 (155)
217 TIGR00531 BCCP acetyl-CoA carb 93.2 0.095 2.1E-06 50.1 4.0 32 650-681 125-156 (156)
218 COG1748 LYS9 Saccharopine dehy 93.1 0.34 7.3E-06 53.1 8.5 118 8-140 1-123 (389)
219 PRK05352 Na(+)-translocating N 93.1 0.098 2.1E-06 58.6 4.5 46 655-701 36-81 (448)
220 PF00358 PTS_EIIA_1: phosphoen 93.1 0.14 3.1E-06 47.3 4.8 21 698-718 86-106 (132)
221 KOG2799|consensus 93.1 0.36 7.8E-06 51.1 8.2 69 121-191 26-106 (434)
222 TIGR00998 8a0101 efflux pump m 93.0 0.11 2.4E-06 56.2 4.6 35 648-682 41-75 (334)
223 KOG2156|consensus 92.9 0.92 2E-05 50.3 11.2 66 133-212 279-345 (662)
224 cd06663 Biotinyl_lipoyl_domain 92.8 0.13 2.9E-06 42.1 3.8 31 650-680 43-73 (73)
225 TIGR03794 NHPM_micro_HlyD NHPM 92.8 0.1 2.2E-06 58.5 4.1 32 650-681 59-90 (421)
226 PRK11556 multidrug efflux syst 92.7 0.25 5.4E-06 55.3 7.0 59 660-719 62-120 (415)
227 PRK05849 hypothetical protein; 92.7 5.5 0.00012 47.8 18.4 176 119-298 8-214 (783)
228 PRK10476 multidrug resistance 92.5 0.2 4.3E-06 54.6 5.8 34 686-719 48-81 (346)
229 PRK11578 macrolide transporter 92.5 0.29 6.2E-06 53.9 7.1 41 678-719 54-94 (370)
230 PRK09859 multidrug efflux syst 92.2 0.32 7E-06 53.8 7.2 59 660-719 36-94 (385)
231 PRK09439 PTS system glucose-sp 92.1 0.6 1.3E-05 45.1 7.8 64 654-718 97-168 (169)
232 PRK09578 periplasmic multidrug 92.1 0.37 8E-06 53.3 7.3 57 662-719 40-96 (385)
233 PF02571 CbiJ: Precorrin-6x re 92.0 1.1 2.5E-05 46.2 10.3 94 9-109 1-97 (249)
234 PRK10255 PTS system N-acetyl g 91.9 0.27 5.8E-06 57.4 6.1 64 651-718 500-602 (648)
235 PRK15136 multidrug efflux syst 91.6 0.23 5E-06 55.1 5.0 34 649-682 61-94 (390)
236 PLN02983 biotin carboxyl carri 91.4 0.22 4.8E-06 50.9 4.2 32 650-681 242-273 (274)
237 COG1064 AdhP Zn-dependent alco 91.3 1.1 2.5E-05 48.1 9.6 159 6-192 165-326 (339)
238 PRK10559 p-hydroxybenzoic acid 91.2 0.26 5.7E-06 52.8 4.8 33 687-719 48-80 (310)
239 PF13478 XdhC_C: XdhC Rossmann 91.2 0.64 1.4E-05 43.4 6.8 85 11-110 1-85 (136)
240 TIGR01730 RND_mfp RND family e 91.1 0.38 8.2E-06 51.5 6.0 34 686-719 26-59 (322)
241 TIGR01000 bacteriocin_acc bact 91.1 0.2 4.4E-06 56.7 4.1 31 651-681 61-91 (457)
242 COG1726 NqrA Na+-transporting 91.1 0.34 7.4E-06 51.1 5.2 48 655-707 35-84 (447)
243 PF04952 AstE_AspA: Succinylgl 90.8 0.71 1.5E-05 48.9 7.6 67 649-718 220-290 (292)
244 PRK04148 hypothetical protein; 90.6 0.78 1.7E-05 42.5 6.6 75 8-88 17-110 (134)
245 COG2190 NagE Phosphotransferas 90.6 0.84 1.8E-05 43.2 6.9 66 653-718 81-154 (156)
246 KOG0559|consensus 90.5 0.2 4.4E-06 52.7 3.0 34 650-683 116-149 (457)
247 CHL00194 ycf39 Ycf39; Provisio 90.4 2.1 4.5E-05 45.8 10.9 69 10-87 2-71 (317)
248 TIGR01945 rnfC electron transp 90.4 0.26 5.7E-06 55.4 4.0 43 658-701 40-82 (435)
249 PRK09824 PTS system beta-gluco 90.2 0.4 8.7E-06 56.0 5.4 64 651-718 480-582 (627)
250 PRK14875 acetoin dehydrogenase 90.2 0.32 6.8E-06 53.0 4.4 34 650-683 46-79 (371)
251 PRK03598 putative efflux pump 90.1 0.35 7.6E-06 52.3 4.7 33 649-681 43-75 (331)
252 PF07065 D123: D123; InterPro 90.1 19 0.00042 38.3 17.5 146 148-305 75-244 (299)
253 COG4770 Acetyl/propionyl-CoA c 90.1 0.31 6.7E-06 54.6 4.1 33 687-719 576-608 (645)
254 PRK15030 multidrug efflux syst 90.0 0.65 1.4E-05 51.6 6.8 44 675-719 55-98 (397)
255 TIGR00999 8a0102 Membrane Fusi 89.8 0.41 8.8E-06 49.8 4.7 30 651-680 90-119 (265)
256 PLN02819 lysine-ketoglutarate 89.7 1.7 3.7E-05 53.6 10.4 146 7-169 568-737 (1042)
257 TIGR01000 bacteriocin_acc bact 89.6 0.55 1.2E-05 53.2 5.9 34 686-719 59-92 (457)
258 TIGR03794 NHPM_micro_HlyD NHPM 89.6 0.47 1E-05 53.2 5.3 32 688-719 60-91 (421)
259 PLN02226 2-oxoglutarate dehydr 89.6 0.36 7.7E-06 54.0 4.2 33 650-682 135-167 (463)
260 TIGR01843 type_I_hlyD type I s 89.2 0.52 1.1E-05 52.6 5.3 40 680-719 37-76 (423)
261 KOG3373|consensus 89.1 0.26 5.6E-06 46.2 2.2 40 665-704 88-127 (172)
262 TIGR01995 PTS-II-ABC-beta PTS 89.0 0.65 1.4E-05 54.4 6.0 20 699-718 547-566 (610)
263 TIGR02964 xanthine_xdhC xanthi 88.9 3.9 8.6E-05 42.2 11.1 36 7-42 99-134 (246)
264 TIGR00999 8a0102 Membrane Fusi 88.8 0.38 8.2E-06 50.0 3.6 31 688-718 90-120 (265)
265 PRK05035 electron transport co 88.7 0.4 8.6E-06 56.7 4.0 50 651-701 36-88 (695)
266 TIGR01108 oadA oxaloacetate de 88.4 0.79 1.7E-05 53.3 6.1 34 686-719 517-550 (582)
267 COG4656 RnfC Predicted NADH:ub 88.1 0.41 8.8E-06 53.4 3.3 39 661-701 45-83 (529)
268 PRK14040 oxaloacetate decarbox 88.0 0.92 2E-05 52.8 6.4 34 686-719 524-557 (593)
269 PTZ00144 dihydrolipoamide succ 88.0 0.54 1.2E-05 52.1 4.2 34 650-683 88-121 (418)
270 TIGR01995 PTS-II-ABC-beta PTS 88.0 1.3 2.8E-05 52.0 7.5 64 654-717 539-609 (610)
271 PF05368 NmrA: NmrA-like famil 87.7 2.1 4.7E-05 43.4 8.3 117 11-136 1-137 (233)
272 PF00358 PTS_EIIA_1: phosphoen 87.0 0.71 1.5E-05 42.8 3.8 31 654-684 79-109 (132)
273 PRK09783 copper/silver efflux 86.8 0.82 1.8E-05 51.0 4.9 34 686-719 123-157 (409)
274 TIGR00830 PTBA PTS system, glu 86.8 2.6 5.7E-05 38.4 7.3 62 649-718 35-102 (121)
275 COG0569 TrkA K+ transport syst 86.7 1.7 3.6E-05 44.3 6.7 91 9-107 1-94 (225)
276 COG4072 Uncharacterized protei 86.7 1.5 3.3E-05 39.8 5.5 53 649-701 91-144 (161)
277 PRK09824 PTS system beta-gluco 86.5 1.7 3.7E-05 50.8 7.4 63 655-717 556-625 (627)
278 PRK05678 succinyl-CoA syntheta 86.2 7.2 0.00016 41.3 11.3 113 1-119 1-130 (291)
279 COG1038 PycA Pyruvate carboxyl 86.2 1.9 4.2E-05 50.3 7.3 74 646-719 1076-1149(1149)
280 cd00210 PTS_IIA_glc PTS_IIA, P 86.0 1.2 2.6E-05 40.8 4.6 30 653-682 74-103 (124)
281 KOG1057|consensus 85.8 0.41 8.9E-06 55.2 1.9 188 98-298 107-321 (1018)
282 TIGR01470 cysG_Nterm siroheme 85.5 2.4 5.3E-05 42.5 7.1 33 8-40 9-41 (205)
283 PRK12446 undecaprenyldiphospho 85.3 3.3 7.1E-05 45.2 8.6 101 8-110 1-119 (352)
284 PRK10255 PTS system N-acetyl g 85.3 2.2 4.7E-05 50.1 7.4 64 655-718 576-647 (648)
285 COG1087 GalE UDP-glucose 4-epi 85.1 3.9 8.5E-05 43.0 8.4 70 10-86 2-73 (329)
286 KOG2157|consensus 85.0 7.3 0.00016 44.2 11.1 54 158-212 199-252 (497)
287 PF13460 NAD_binding_10: NADH( 84.9 6 0.00013 38.2 9.5 68 11-89 1-69 (183)
288 PRK05305 phosphatidylserine de 84.7 2.9 6.2E-05 42.0 7.2 63 647-710 51-115 (206)
289 PF02843 GARS_C: Phosphoribosy 84.4 1.4 2.9E-05 38.3 4.1 29 395-423 54-82 (93)
290 PF01551 Peptidase_M23: Peptid 84.4 2.7 5.9E-05 36.3 6.1 59 650-718 14-73 (96)
291 PRK12999 pyruvate carboxylase; 84.2 3.1 6.6E-05 52.5 8.5 73 647-719 1074-1146(1146)
292 PLN00016 RNA-binding protein; 83.7 8.8 0.00019 42.2 11.2 98 6-112 50-164 (378)
293 PF00070 Pyr_redox: Pyridine n 83.4 2.6 5.6E-05 35.1 5.3 31 10-40 1-31 (80)
294 cd06849 lipoyl_domain Lipoyl d 83.4 1.5 3.2E-05 34.8 3.7 31 650-680 44-74 (74)
295 COG1566 EmrA Multidrug resista 83.3 1.4 3E-05 47.8 4.5 32 650-681 54-85 (352)
296 PRK06988 putative formyltransf 83.2 2 4.4E-05 46.0 5.7 36 10-45 4-39 (312)
297 PRK05704 dihydrolipoamide succ 83.2 1.3 2.9E-05 49.1 4.4 35 650-684 46-80 (407)
298 TIGR02876 spore_yqfD sporulati 83.1 5.8 0.00013 43.8 9.3 33 647-679 184-223 (382)
299 PRK03659 glutathione-regulated 83.1 1.2 2.6E-05 52.3 4.3 115 8-136 400-514 (601)
300 PRK10669 putative cation:proto 82.9 2.2 4.7E-05 49.8 6.2 115 8-136 417-531 (558)
301 PRK05993 short chain dehydroge 82.1 4.7 0.0001 42.1 7.9 34 7-40 3-37 (277)
302 PRK06718 precorrin-2 dehydroge 81.9 5.1 0.00011 40.0 7.7 32 7-38 9-40 (202)
303 PRK06552 keto-hydroxyglutarate 81.8 21 0.00045 36.0 12.0 23 16-38 23-45 (213)
304 PF07831 PYNP_C: Pyrimidine nu 81.8 1.4 3E-05 36.6 2.9 28 653-682 28-55 (75)
305 PRK07060 short chain dehydroge 81.8 4.3 9.3E-05 41.1 7.3 82 1-89 1-86 (245)
306 COG0845 AcrA Membrane-fusion p 81.1 1.4 3.1E-05 47.3 3.7 32 651-682 68-99 (372)
307 PLN02657 3,8-divinyl protochlo 81.1 19 0.00041 39.8 12.6 75 7-88 59-144 (390)
308 COG0702 Predicted nucleoside-d 80.8 25 0.00054 36.1 12.9 166 10-191 2-187 (275)
309 COG0845 AcrA Membrane-fusion p 80.6 3.9 8.4E-05 43.9 6.9 43 676-719 57-99 (372)
310 COG0508 AceF Pyruvate/2-oxoglu 80.6 2.1 4.5E-05 47.6 4.7 34 650-683 46-79 (404)
311 TIGR01347 sucB 2-oxoglutarate 80.5 1.9 4.2E-05 47.8 4.5 34 650-683 44-77 (403)
312 PLN02240 UDP-glucose 4-epimera 80.4 8.8 0.00019 41.4 9.6 79 1-87 1-88 (352)
313 PRK05878 pyruvate phosphate di 80.2 24 0.00053 40.6 13.2 40 255-298 257-296 (530)
314 COG0771 MurD UDP-N-acetylmuram 80.2 4.9 0.00011 45.0 7.5 95 1-110 1-98 (448)
315 PRK05472 redox-sensing transcr 80.1 14 0.0003 37.2 10.2 89 8-109 84-174 (213)
316 TIGR03025 EPS_sugtrans exopoly 79.7 11 0.00023 42.6 10.2 90 7-108 124-218 (445)
317 PLN02695 GDP-D-mannose-3',5'-e 79.4 8.4 0.00018 42.3 9.1 70 9-87 22-92 (370)
318 PF02254 TrkA_N: TrkA-N domain 79.3 2.2 4.8E-05 38.0 3.8 85 11-103 1-85 (116)
319 PRK12828 short chain dehydroge 79.2 8.7 0.00019 38.5 8.6 40 1-41 1-41 (239)
320 PF01820 Dala_Dala_lig_N: D-al 79.1 0.26 5.6E-06 44.7 -2.5 87 20-111 21-117 (117)
321 PF04321 RmlD_sub_bind: RmlD s 78.6 7.9 0.00017 40.9 8.2 85 10-116 2-104 (286)
322 TIGR01285 nifN nitrogenase mol 78.6 11 0.00025 42.3 9.9 85 8-109 311-395 (432)
323 PRK13303 L-aspartate dehydroge 78.4 11 0.00024 39.4 9.1 118 10-141 3-123 (265)
324 PRK05305 phosphatidylserine de 78.1 3.7 8E-05 41.2 5.2 55 657-716 149-204 (206)
325 KOG1447|consensus 78.1 13 0.00029 38.0 8.9 101 122-224 24-143 (412)
326 PRK06719 precorrin-2 dehydroge 78.0 4.3 9.4E-05 38.8 5.5 30 8-37 13-42 (157)
327 PRK03562 glutathione-regulated 77.9 2.7 5.8E-05 49.6 4.8 116 8-137 400-515 (621)
328 TIGR03309 matur_yqeB selenium- 77.9 3 6.4E-05 42.8 4.4 34 685-719 163-196 (256)
329 TIGR00164 PS_decarb_rel phosph 77.7 4.1 8.9E-05 40.3 5.4 48 664-715 135-182 (189)
330 cd03466 Nitrogenase_NifN_2 Nit 77.5 12 0.00026 42.0 9.7 89 7-109 299-394 (429)
331 cd01075 NAD_bind_Leu_Phe_Val_D 77.2 18 0.00039 36.0 9.9 113 8-141 28-140 (200)
332 PRK07523 gluconate 5-dehydroge 77.0 4.4 9.6E-05 41.5 5.7 40 1-40 1-43 (255)
333 PRK05693 short chain dehydroge 76.7 7.6 0.00016 40.3 7.4 33 8-40 1-34 (274)
334 COG2308 Uncharacterized conser 76.7 8.8 0.00019 42.3 7.7 87 130-220 340-435 (488)
335 PRK06464 phosphoenolpyruvate s 76.7 61 0.0013 39.5 15.8 44 252-298 288-332 (795)
336 PRK12826 3-ketoacyl-(acyl-carr 76.5 8.7 0.00019 38.9 7.7 35 6-40 4-39 (251)
337 PRK07454 short chain dehydroge 76.5 8.7 0.00019 38.9 7.7 38 3-40 1-39 (241)
338 TIGR03023 WcaJ_sugtrans Undeca 76.5 16 0.00034 41.3 10.4 89 8-108 128-221 (451)
339 PRK08177 short chain dehydroge 76.3 12 0.00026 37.6 8.5 76 8-89 1-80 (225)
340 PRK09496 trkA potassium transp 76.2 7.3 0.00016 43.9 7.7 92 7-105 230-322 (453)
341 TIGR00518 alaDH alanine dehydr 75.9 5.5 0.00012 43.8 6.3 33 7-39 166-198 (370)
342 PF06898 YqfD: Putative stage 75.8 12 0.00027 41.3 9.0 33 647-679 187-226 (385)
343 PRK10124 putative UDP-glucose 75.6 18 0.0004 41.0 10.6 86 8-108 143-233 (463)
344 PRK07576 short chain dehydroge 75.6 6.6 0.00014 40.6 6.6 40 1-40 1-42 (264)
345 PRK01368 murD UDP-N-acetylmura 75.3 13 0.00029 42.0 9.4 92 3-110 1-92 (454)
346 PRK08017 oxidoreductase; Provi 75.2 12 0.00026 38.2 8.3 34 8-41 2-36 (256)
347 PRK10217 dTDP-glucose 4,6-dehy 75.2 13 0.00028 40.2 9.0 76 8-89 1-83 (355)
348 TIGR00164 PS_decarb_rel phosph 75.1 8.7 0.00019 38.0 6.8 62 647-709 32-95 (189)
349 PRK06523 short chain dehydroge 75.0 15 0.00032 37.7 9.0 41 1-41 1-43 (260)
350 PRK07109 short chain dehydroge 74.8 6 0.00013 42.7 6.2 40 1-40 1-41 (334)
351 PRK08264 short chain dehydroge 74.8 17 0.00038 36.5 9.4 76 7-90 5-83 (238)
352 TIGR02622 CDP_4_6_dhtase CDP-g 74.8 12 0.00026 40.5 8.6 77 8-89 4-84 (349)
353 PRK12825 fabG 3-ketoacyl-(acyl 74.7 9.9 0.00021 38.3 7.5 34 6-39 4-38 (249)
354 KOG0369|consensus 74.6 2.3 4.9E-05 48.6 2.8 66 647-719 1104-1176(1176)
355 PLN00141 Tic62-NAD(P)-related 74.6 35 0.00076 34.9 11.7 35 7-41 16-51 (251)
356 TIGR01418 PEP_synth phosphoeno 74.1 93 0.002 37.9 16.5 45 252-298 286-330 (782)
357 PRK00421 murC UDP-N-acetylmura 73.9 12 0.00026 42.4 8.7 92 4-110 3-95 (461)
358 COG1832 Predicted CoA-binding 73.8 7.3 0.00016 36.1 5.4 98 7-109 15-124 (140)
359 PRK05653 fabG 3-ketoacyl-(acyl 73.7 14 0.00031 37.1 8.4 35 7-41 4-39 (246)
360 PRK13394 3-hydroxybutyrate deh 73.6 12 0.00025 38.3 7.8 35 7-41 6-41 (262)
361 PF03435 Saccharop_dh: Sacchar 73.5 6.2 0.00014 43.5 6.1 116 11-140 1-122 (386)
362 PLN02572 UDP-sulfoquinovose sy 73.5 17 0.00037 41.0 9.7 32 7-38 46-78 (442)
363 COG0223 Fmt Methionyl-tRNA for 73.0 6.3 0.00014 41.9 5.5 38 10-47 3-40 (307)
364 TIGR02717 AcCoA-syn-alpha acet 72.9 33 0.00072 38.8 11.7 106 8-119 7-135 (447)
365 PRK10537 voltage-gated potassi 72.6 11 0.00024 41.8 7.6 113 8-136 240-352 (393)
366 PF01370 Epimerase: NAD depend 72.5 11 0.00025 37.6 7.3 74 11-90 1-75 (236)
367 PRK13302 putative L-aspartate 72.2 25 0.00055 36.8 9.9 121 4-141 2-126 (271)
368 PRK00726 murG undecaprenyldiph 72.2 21 0.00046 38.6 9.8 98 10-109 3-118 (357)
369 PRK05562 precorrin-2 dehydroge 72.2 17 0.00038 36.8 8.3 33 8-40 25-57 (223)
370 KOG0238|consensus 71.9 3.3 7.1E-05 46.1 3.1 32 687-718 602-633 (670)
371 PRK12829 short chain dehydroge 71.8 8 0.00017 39.6 6.1 79 7-90 10-96 (264)
372 PRK12475 thiamine/molybdopteri 71.7 5.8 0.00013 43.0 5.1 121 8-138 24-146 (338)
373 PF01488 Shikimate_DH: Shikima 71.6 7.7 0.00017 36.0 5.3 32 7-38 11-42 (135)
374 PF09370 TIM-br_sig_trns: TIM- 71.5 46 0.001 34.5 11.1 117 61-195 89-209 (268)
375 cd01965 Nitrogenase_MoFe_beta_ 71.4 12 0.00027 41.9 7.8 88 7-110 298-394 (428)
376 PLN02528 2-oxoisovalerate dehy 71.4 4.8 0.0001 44.9 4.5 35 650-684 42-76 (416)
377 PRK06172 short chain dehydroge 71.3 13 0.00027 38.0 7.4 40 1-41 1-41 (253)
378 TIGR01283 nifE nitrogenase mol 71.3 18 0.00038 41.1 9.1 88 8-109 326-417 (456)
379 TIGR03466 HpnA hopanoid-associ 71.2 18 0.0004 38.2 8.9 67 10-85 2-69 (328)
380 PRK07666 fabG 3-ketoacyl-(acyl 71.1 11 0.00025 38.0 7.0 33 8-40 7-40 (239)
381 PRK08220 2,3-dihydroxybenzoate 71.1 33 0.00071 34.8 10.4 35 7-41 7-42 (252)
382 TIGR02049 gshA_ferroox glutama 70.9 21 0.00046 38.6 8.7 50 161-210 260-312 (403)
383 PRK06179 short chain dehydroge 70.8 26 0.00057 36.0 9.8 74 8-90 4-83 (270)
384 TIGR03586 PseI pseudaminic aci 70.6 66 0.0014 34.7 12.7 142 18-192 17-158 (327)
385 PRK07236 hypothetical protein; 70.6 7.5 0.00016 42.8 5.8 33 6-38 4-36 (386)
386 cd01076 NAD_bind_1_Glu_DH NAD( 70.5 18 0.00038 36.9 8.0 32 7-38 30-61 (227)
387 cd04728 ThiG Thiazole synthase 70.4 61 0.0013 33.3 11.6 151 19-201 77-234 (248)
388 COG4942 Membrane-bound metallo 70.4 2.6 5.7E-05 46.3 2.0 67 650-720 297-393 (420)
389 COG1091 RfbD dTDP-4-dehydrorha 70.2 22 0.00047 37.4 8.7 134 11-173 3-155 (281)
390 PLN02653 GDP-mannose 4,6-dehyd 70.1 21 0.00045 38.4 9.1 76 8-88 6-91 (340)
391 PRK08265 short chain dehydroge 70.0 14 0.00031 38.0 7.5 34 8-41 6-40 (261)
392 PRK03934 phosphatidylserine de 70.0 18 0.00038 37.9 8.1 62 648-709 68-151 (265)
393 PRK12823 benD 1,6-dihydroxycyc 70.0 12 0.00025 38.5 6.8 39 1-39 1-40 (260)
394 KOG0368|consensus 69.9 57 0.0012 41.4 12.9 137 547-698 624-771 (2196)
395 PRK12939 short chain dehydroge 69.9 15 0.00032 37.2 7.5 34 7-40 6-40 (250)
396 PRK08267 short chain dehydroge 69.8 13 0.00028 38.1 7.2 34 8-41 1-35 (260)
397 PLN03209 translocon at the inn 69.6 32 0.0007 39.9 10.6 35 7-41 79-114 (576)
398 COG2910 Putative NADH-flavin r 69.5 39 0.00084 33.2 9.5 71 10-91 2-73 (211)
399 PRK06398 aldose dehydrogenase; 69.4 37 0.00079 34.9 10.4 33 8-40 6-39 (258)
400 TIGR01214 rmlD dTDP-4-dehydror 69.3 14 0.0003 38.6 7.3 58 10-89 1-59 (287)
401 TIGR03649 ergot_EASG ergot alk 69.3 31 0.00068 35.9 10.0 66 10-85 1-72 (285)
402 PF01113 DapB_N: Dihydrodipico 69.2 17 0.00037 33.1 6.9 33 10-42 2-36 (124)
403 PRK14573 bifunctional D-alanyl 69.2 31 0.00067 42.2 11.2 87 7-110 3-92 (809)
404 PF12700 HlyD_2: HlyD family s 69.1 5.2 0.00011 42.8 4.1 33 651-683 136-193 (328)
405 TIGR01472 gmd GDP-mannose 4,6- 69.1 21 0.00046 38.4 8.9 75 9-88 1-86 (343)
406 TIGR02437 FadB fatty oxidation 69.0 9.5 0.00021 45.8 6.5 37 6-42 311-347 (714)
407 PRK06483 dihydromonapterin red 68.9 19 0.0004 36.3 8.0 35 7-41 1-36 (236)
408 TIGR02355 moeB molybdopterin s 68.7 43 0.00093 34.4 10.5 31 8-38 24-54 (240)
409 PRK11856 branched-chain alpha- 68.6 5.8 0.00013 44.3 4.4 35 650-684 46-80 (411)
410 TIGR00830 PTBA PTS system, glu 68.5 5.2 0.00011 36.5 3.2 27 656-682 77-103 (121)
411 PRK06182 short chain dehydroge 68.5 16 0.00036 37.8 7.6 76 8-90 3-84 (273)
412 PLN00200 argininosuccinate syn 68.5 39 0.00084 37.6 10.6 34 7-40 4-39 (404)
413 PRK06057 short chain dehydroge 68.3 16 0.00034 37.4 7.3 34 7-40 6-40 (255)
414 TIGR02263 benz_CoA_red_C benzo 68.3 11 0.00024 41.5 6.5 103 7-109 232-355 (380)
415 PRK11908 NAD-dependent epimera 68.3 16 0.00035 39.4 7.8 30 9-38 2-33 (347)
416 PRK11730 fadB multifunctional 68.1 11 0.00023 45.4 6.8 37 6-42 311-347 (715)
417 PRK06194 hypothetical protein; 67.9 21 0.00046 37.1 8.4 34 7-40 5-39 (287)
418 PRK00208 thiG thiazole synthas 67.7 65 0.0014 33.1 11.1 124 66-202 106-235 (250)
419 PRK06180 short chain dehydroge 67.3 18 0.0004 37.6 7.7 34 8-41 4-38 (277)
420 COG0063 Predicted sugar kinase 67.3 69 0.0015 33.8 11.8 146 7-166 31-198 (284)
421 cd01080 NAD_bind_m-THF_DH_Cycl 67.0 8.6 0.00019 37.2 4.7 49 7-55 43-92 (168)
422 PF13477 Glyco_trans_4_2: Glyc 67.0 19 0.00042 32.8 7.0 79 10-88 1-82 (139)
423 PRK05565 fabG 3-ketoacyl-(acyl 66.9 14 0.00031 37.2 6.7 31 7-37 4-35 (247)
424 cd01976 Nitrogenase_MoFe_alpha 66.9 15 0.00032 41.2 7.2 89 7-109 299-391 (421)
425 PRK04690 murD UDP-N-acetylmura 66.9 28 0.00061 39.6 9.6 89 8-110 8-98 (468)
426 PF02826 2-Hacid_dh_C: D-isome 66.8 10 0.00022 36.9 5.3 35 7-41 35-69 (178)
427 PF13727 CoA_binding_3: CoA-bi 66.8 27 0.00059 33.1 8.2 89 9-108 78-171 (175)
428 PRK06935 2-deoxy-D-gluconate 3 66.7 20 0.00042 36.8 7.7 34 7-40 14-48 (258)
429 PRK07326 short chain dehydroge 66.6 16 0.00034 36.8 6.8 33 8-40 6-39 (237)
430 PRK14106 murD UDP-N-acetylmura 66.5 27 0.00059 39.3 9.4 88 8-109 5-96 (450)
431 PLN02214 cinnamoyl-CoA reducta 66.4 29 0.00062 37.6 9.2 35 6-40 8-43 (342)
432 PRK01438 murD UDP-N-acetylmura 66.4 15 0.00033 41.8 7.3 92 8-115 16-111 (480)
433 PRK00141 murD UDP-N-acetylmura 66.2 24 0.00053 40.1 8.9 86 8-110 15-103 (473)
434 PRK05865 hypothetical protein; 65.8 70 0.0015 39.2 13.0 110 10-137 2-121 (854)
435 TIGR01349 PDHac_trf_mito pyruv 65.8 6.7 0.00015 44.1 4.2 35 650-684 43-78 (435)
436 PRK07577 short chain dehydroge 65.8 41 0.00089 33.6 9.7 70 9-90 4-78 (234)
437 CHL00162 thiG thiamin biosynth 65.7 1E+02 0.0022 31.8 12.0 120 68-200 122-247 (267)
438 PRK06125 short chain dehydroge 65.6 9.9 0.00022 39.0 5.2 83 1-89 1-90 (259)
439 PRK10871 nlpD lipoprotein NlpD 65.0 15 0.00032 39.4 6.3 61 650-718 230-290 (319)
440 PRK06847 hypothetical protein; 65.0 11 0.00023 41.2 5.6 32 7-38 3-34 (375)
441 COG0794 GutQ Predicted sugar p 64.8 15 0.00033 36.5 5.9 50 10-61 90-141 (202)
442 PRK06953 short chain dehydroge 64.7 24 0.00051 35.3 7.7 33 8-40 1-34 (222)
443 TIGR02356 adenyl_thiF thiazole 64.6 35 0.00075 34.0 8.7 119 8-138 21-141 (202)
444 PRK07062 short chain dehydroge 64.5 23 0.00051 36.3 7.8 41 1-41 1-42 (265)
445 PRK07856 short chain dehydroge 64.5 42 0.0009 34.2 9.6 34 8-41 6-40 (252)
446 PRK03369 murD UDP-N-acetylmura 64.3 27 0.0006 39.9 8.9 87 7-110 11-99 (488)
447 PF13241 NAD_binding_7: Putati 64.0 6.5 0.00014 34.6 3.0 34 7-40 6-39 (103)
448 PRK04527 argininosuccinate syn 63.7 91 0.002 34.6 12.3 33 8-40 2-35 (400)
449 PRK08163 salicylate hydroxylas 63.6 11 0.00025 41.3 5.6 32 8-39 4-35 (396)
450 PRK09135 pteridine reductase; 63.6 30 0.00064 34.9 8.3 32 8-39 6-38 (249)
451 PRK07774 short chain dehydroge 63.5 25 0.00054 35.6 7.7 33 8-40 6-39 (250)
452 PRK08773 2-octaprenyl-3-methyl 63.5 9.9 0.00021 41.9 5.0 34 6-39 4-37 (392)
453 PRK15181 Vi polysaccharide bio 63.4 31 0.00068 37.3 8.9 32 8-39 15-47 (348)
454 COG0800 Eda 2-keto-3-deoxy-6-p 63.3 1.3E+02 0.0028 30.2 12.1 108 11-160 18-128 (211)
455 PRK12744 short chain dehydroge 63.3 42 0.00091 34.3 9.4 39 1-39 1-40 (257)
456 PRK07806 short chain dehydroge 63.3 33 0.00072 34.7 8.6 32 8-39 6-38 (248)
457 PRK07688 thiamine/molybdopteri 63.3 10 0.00022 41.2 4.9 122 7-138 23-146 (339)
458 TIGR03022 WbaP_sugtrans Undeca 63.3 46 0.001 37.6 10.5 88 7-106 124-216 (456)
459 PRK05557 fabG 3-ketoacyl-(acyl 63.3 33 0.00072 34.4 8.6 32 9-40 6-38 (248)
460 PRK14478 nitrogenase molybdenu 63.2 27 0.00059 39.8 8.5 89 7-109 323-415 (475)
461 PRK07063 short chain dehydroge 63.1 20 0.00042 36.8 6.9 34 7-40 6-40 (260)
462 PRK00048 dihydrodipicolinate r 63.0 1.1E+02 0.0023 31.8 12.3 84 10-109 3-88 (257)
463 PRK07231 fabG 3-ketoacyl-(acyl 63.0 24 0.00053 35.6 7.5 78 8-90 5-91 (251)
464 cd01483 E1_enzyme_family Super 62.9 44 0.00095 31.0 8.6 28 10-37 1-28 (143)
465 PRK07814 short chain dehydroge 62.8 21 0.00045 36.8 7.0 33 8-40 10-43 (263)
466 PF01408 GFO_IDH_MocA: Oxidore 62.7 19 0.00041 32.0 5.9 88 10-110 2-91 (120)
467 PRK07097 gluconate 5-dehydroge 62.6 31 0.00067 35.5 8.3 40 1-40 1-43 (265)
468 PRK05875 short chain dehydroge 62.5 21 0.00045 37.0 7.0 33 8-40 7-40 (276)
469 COG1810 Uncharacterized protei 62.5 1.8E+02 0.0039 29.4 13.9 24 10-33 3-26 (224)
470 PF02749 QRPTase_N: Quinolinat 62.3 9.1 0.0002 32.7 3.5 25 658-682 44-68 (88)
471 PRK05868 hypothetical protein; 62.3 12 0.00025 41.2 5.2 32 8-39 1-32 (372)
472 PRK02006 murD UDP-N-acetylmura 62.3 42 0.00091 38.5 10.0 39 1-40 1-39 (498)
473 PRK12742 oxidoreductase; Provi 62.2 31 0.00068 34.5 8.1 76 7-89 5-84 (237)
474 PRK09987 dTDP-4-dehydrorhamnos 62.2 27 0.00058 36.9 7.9 60 10-88 2-62 (299)
475 PRK06436 glycerate dehydrogena 62.0 37 0.0008 36.2 8.8 31 8-38 122-152 (303)
476 PRK12745 3-ketoacyl-(acyl-carr 62.0 36 0.00078 34.6 8.6 33 7-39 1-34 (256)
477 TIGR03013 EpsB_2 sugar transfe 61.9 47 0.001 37.5 10.1 68 8-88 124-194 (442)
478 PRK09424 pntA NAD(P) transhydr 61.8 23 0.0005 40.6 7.6 36 7-42 164-199 (509)
479 TIGR03569 NeuB_NnaB N-acetylne 61.8 97 0.0021 33.5 11.9 141 18-192 16-157 (329)
480 PRK00509 argininosuccinate syn 61.8 64 0.0014 35.8 10.8 33 8-40 2-36 (399)
481 KOG1198|consensus 61.8 72 0.0016 34.7 11.1 75 7-90 157-235 (347)
482 PRK07067 sorbitol dehydrogenas 61.7 20 0.00043 36.6 6.6 34 8-41 6-40 (257)
483 TIGR01133 murG undecaprenyldip 61.6 77 0.0017 33.8 11.5 98 10-109 2-117 (348)
484 cd03785 GT1_MurG MurG is an N- 61.6 57 0.0012 34.9 10.4 98 10-109 1-116 (350)
485 PRK07074 short chain dehydroge 61.5 29 0.00062 35.4 7.8 34 7-40 1-35 (257)
486 PRK07114 keto-hydroxyglutarate 61.3 1.2E+02 0.0025 30.9 11.7 111 15-164 24-137 (222)
487 PRK08643 acetoin reductase; Va 61.3 23 0.0005 36.1 7.0 34 7-40 1-35 (256)
488 PRK06841 short chain dehydroge 61.0 30 0.00064 35.2 7.8 34 8-41 15-49 (255)
489 PRK05717 oxidoreductase; Valid 60.9 24 0.00051 36.1 7.0 40 1-40 1-43 (255)
490 PF04174 CP_ATPgrasp_1: A circ 60.8 10 0.00022 40.9 4.2 60 130-192 262-322 (330)
491 PRK12266 glpD glycerol-3-phosp 60.8 12 0.00027 42.9 5.3 37 1-39 1-37 (508)
492 PRK12743 oxidoreductase; Provi 60.6 31 0.00067 35.3 7.8 33 7-39 1-34 (256)
493 PLN02775 Probable dihydrodipic 60.5 2.1E+02 0.0046 30.2 13.7 72 8-85 11-84 (286)
494 PRK08219 short chain dehydroge 60.5 20 0.00043 35.6 6.2 75 8-89 3-80 (227)
495 COG0287 TyrA Prephenate dehydr 60.5 48 0.001 34.9 9.1 36 7-42 2-37 (279)
496 PRK06171 sorbitol-6-phosphate 60.4 67 0.0015 32.9 10.4 34 8-41 9-43 (266)
497 TIGR01278 DPOR_BchB light-inde 60.4 36 0.00077 39.2 8.9 69 8-85 295-369 (511)
498 TIGR02990 ectoine_eutA ectoine 60.2 1E+02 0.0022 31.7 11.3 62 67-137 165-229 (239)
499 COG0373 HemA Glutamyl-tRNA red 60.1 70 0.0015 35.6 10.6 30 8-37 178-207 (414)
500 PRK12784 hypothetical protein; 60.0 11 0.00023 31.1 3.2 33 651-683 45-77 (84)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=2.7e-149 Score=1184.79 Aligned_cols=644 Identities=45% Similarity=0.752 Sum_probs=573.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
||+||||+|||||||||||+||++|+++|+|||++|.+++|+++||++|.|+|.+..+||++.++|+++|++.++++|||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
||||||||+.|+++|++.|+.|+||++++|+.|+||..+|.++.++|+|++|++.+.+++.+++..+++++||||+||++
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+|||||+++++.+|+.++++++++|+.++||++.+|||+|+..+||+|+||++|+|||++++++||||+||||||++|
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
++|+|.++++++++|.+.++++++++||.|++||||+++ .++.|||||||+|+|++||+||++||+||++||++++.|+
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd-~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Ge 319 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVD-ADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGE 319 (645)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEc-CCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999 7888999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+|++.|.+++.+|||||+|||+|||.++|+|++|+|.+|+.|. ++++|+|+++..|+.|++||||||+|||+||.||++
T Consensus 320 kL~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~-~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~e 398 (645)
T COG4770 320 KLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPA-GPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREE 398 (645)
T ss_pred cCCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCC-CCceecccCcccCCccccccchHHHHHhhcCCCHHH
Confidence 9999999999999999999999999999999999999999998 589999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccccccCCCCchHHHHHHHHHHHHHHhhhHHHHH
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLKQIQDAKLEK 486 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 486 (720)
|+++|.+||+++.|.|+.||++||++++.||+|+.|+++|+||.+++++++.+.......+.++++ .... .
T Consensus 399 Al~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~~~~~~~~~~aa~~~--~~~~-------~ 469 (645)
T COG4770 399 ALDRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAPAPASADALAAAAL--LAQP-------A 469 (645)
T ss_pred HHHHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccccCCCchhhhHHHHHh--hhch-------h
Confidence 999999999999999999999999999999999999999999999999998444333333333332 1111 0
Q ss_pred hhccCCccccccccccccccchhhhHHHHHHHHHhhHHhhhhccCCcccccccccccCCceEEEEEEECCEEEEEEEEEe
Q psy15251 487 AKSNGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAKLEKAKSNRNVFSLLTGFRMNHSHVKTVQIQHLNKEYNVQVTLS 566 (720)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~v~~~ 566 (720)
... ....+||++..+|+.+........+..++...++++...
T Consensus 470 ~~~--------------------------------------~~~~~pw~~~~~w~~~~~~~~~~~~~~~~~~~~v~l~~~ 511 (645)
T COG4770 470 LER--------------------------------------RAESDPWASLSGWVVTGDAAELRVLIDGEERVEVRLPAR 511 (645)
T ss_pred hhc--------------------------------------ccccCcccccCCceeecceeeeeEEecCCcceEEEEecc
Confidence 000 112378998889998876554433333333444444322
Q ss_pred CcEEEEEEeCCCeeEEEEeecccccccCCceeEEEeeecCe-EEEEEEEECCeEEEEEcCceEEEEecCCCCCCCCCCCC
Q psy15251 567 AHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGR-IRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSA 645 (720)
Q Consensus 567 ~~~~~v~i~~~~~~~v~~~~~~~~~~~~~~~~l~~~~i~g~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 645 (720)
++...+.+ .. .+. . ....+. ++|. ...++...++.++++..+..+++....+... +...
T Consensus 512 ~g~~~~~~--------~~---~~~---~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---~~~~ 571 (645)
T COG4770 512 EGRERFYV--------DS---DWD---P--ELASAA-LSGRKRAVRVARAGGGLTLFWGGGSPRIAELDKLGG---AKVA 571 (645)
T ss_pred CCcceeee--------ec---cCC---c--cceeEE-ecCccccceeeecCCceEEecCCcCccccccccccc---cccc
Confidence 22222222 11 111 0 112334 6676 6666777888899988888766654433322 2233
Q ss_pred CCCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 646 LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 646 ~~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...++.|.|||||+|++|.|++|++|.+||+|++||||||||.|+||.+|+|+++.+++|++|..|++|+++++
T Consensus 572 ~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 572 AASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0238|consensus
Probab=100.00 E-value=8e-143 Score=1115.15 Aligned_cols=665 Identities=49% Similarity=0.787 Sum_probs=602.3
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCC
Q psy15251 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGF 90 (720)
Q Consensus 11 iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~ 90 (720)
|||+||||||||++|+||+||+++|+|||++|.++.|+.+||++|+++|++...+|++.+.|++++++.++++|||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCC
Q psy15251 91 LSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGG 170 (720)
Q Consensus 91 lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~G 170 (720)
||||..|+++|++.|+.|+||++.+|+.|+||..+|++|+++|||+.|++.+..+|.+++.+.++++|||||||+..|+|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEEcCC
Q psy15251 171 GKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250 (720)
Q Consensus 171 g~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~Pa 250 (720)
|+|||++++++|+.+.++.+++|+.++||++.+|+|+||+.+||++||+++|++|+.+++++||||+||||||++|++|+
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCCCCCC
Q psy15251 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPL 330 (720)
Q Consensus 251 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~~l~~ 330 (720)
|.++++.|.+|.++|+++++++||.|++||||++| ..+.|||||||+|+|++||+||++||+||++||||+|.|++|++
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D-~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~ 319 (670)
T KOG0238|consen 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVD-SKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPL 319 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEc-CCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999 67889999999999999999999999999999999999999999
Q ss_pred CCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHHHHHH
Q psy15251 331 KQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNK 410 (720)
Q Consensus 331 ~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~ 410 (720)
+|++++.+||++|||||||||.++|+|++|++.++.+|...|++|+|+++++|+.|+++|||||||+|+||.||++|+.|
T Consensus 320 ~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~k 399 (670)
T KOG0238|consen 320 KQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNK 399 (670)
T ss_pred CcceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred HHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccccccCCCC-chHHHHHHHHHHHHHHhhhHHHHHhhc
Q psy15251 411 MKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLP-QTEIILQAALSLVLKQIQDAKLEKAKS 489 (720)
Q Consensus 411 ~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 489 (720)
|.++|+++.|.|+.|||+||+.++.||+|..|+++|.||.+|.+++|..... +.+.+..+|++..+.. ....
T Consensus 400 l~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~-------~~~~ 472 (670)
T KOG0238|consen 400 LKDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITPAEQLSQAAVASSLNA-------WASG 472 (670)
T ss_pred HHHHHhhcEEecCccchHHHHHHhcChhhhcCccccccchhcCccccCccccCcHHHHHHHHHHHHHHH-------Hhhc
Confidence 9999999999999999999999999999999999999999999999988544 4455555555444433 1100
Q ss_pred cCCccccccccccccccchhhhHHHHHHHHHhhHHhhhhccCCcccccccccccCCceEEEEEEECCEEEEEEEEE-eCc
Q psy15251 490 NGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAKLEKAKSNRNVFSLLTGFRMNHSHVKTVQIQHLNKEYNVQVTL-SAH 568 (720)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~v~~-~~~ 568 (720)
+ -..|+++. .++.++|.+...+|+|....+.+.+..+...+.+.|.+ +++
T Consensus 473 ~------a~~f~~~n-----------------------~~~~~v~~~~~~~r~n~s~~~~~~~~~~e~~v~v~V~~~~~s 523 (670)
T KOG0238|consen 473 R------AYQFRLQN-----------------------KDRASVFSSSPPFRFNCSLVVKITLKTGENPVHVAVRFNSDS 523 (670)
T ss_pred h------hhHHhhcc-----------------------CCccceeccCCceEEEEeeEEEEcccCCccceEEEEEECCCC
Confidence 0 00122111 23447888888999999888888888888889999999 788
Q ss_pred EEEEEEeCCCeeEE-EEeecccccccCCceeEEEeeecCe-EEEEEEEECCeEEEEEcCceEEEEecCCCCCCCC-CCCC
Q psy15251 569 TYRVSIRGDPSSEL-CIKNASLTQVSKYGYELVAEGEKGR-IRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEP-EDSA 645 (720)
Q Consensus 569 ~~~v~i~~~~~~~v-~~~~~~~~~~~~~~~~l~~~~i~g~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 645 (720)
+|++.+ +++.|.. .. .+... .....++++ ..+. +.......+++++++..++.+.++...|++.... +...
T Consensus 524 ~~si~~-~~~~~~~i~~---~~~~~-~~~~s~~~~-~~~~~~~~~~~~~g~~~~l~~~~~~~~ve~~~~k~l~~~~s~~~ 597 (670)
T KOG0238|consen 524 SLSIEV-DGSSYLTIKG---DINVP-GPLLSISVD-GEGNGYQGRVIILGDEISLFSNEGVIKVEVLPPKYLSPQSSETK 597 (670)
T ss_pred eEEEEe-cCCceEeecc---ceecc-cccceEEEE-eccCceEEEEEEeCCeEEEEecCcceeEecCChHhhhhhhhhhc
Confidence 999999 8877543 32 22211 112224444 4455 6777778889999999999999988777554300 1222
Q ss_pred CCCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 646 LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 646 ~~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
...++.+.|||||.|.+++|++||.|++||.|++|||||||+.++||.+|+|+.+.++.|++|..|.+|++++
T Consensus 598 ~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 598 EDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred cCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999874
No 3
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1e-110 Score=910.32 Aligned_cols=445 Identities=44% Similarity=0.757 Sum_probs=431.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCC-CcccccCHHHHHHHHHHcCCCEE
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKS-SLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~-~~~~~~~~~~i~~~a~~~~~daI 84 (720)
.+++||||+||||||+|+.|+|.++|++||++|+..|..+.|...||++|.++... +.++|++++.|+++|++.++|+|
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 36899999999999999999999999999999999999999999999999998654 35899999999999999999999
Q ss_pred EeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEe
Q psy15251 85 HPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIK 164 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvK 164 (720)
||||||||||++|++.|.++||.|+||.++.++.++||.++|.++.++|||+.|+..+++.+.+++.++++++|||+|||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeE
Q psy15251 165 AVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKI 244 (720)
Q Consensus 165 p~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~ 244 (720)
++.||||||||+|++.++|.++++++.+|++++||++.++||+||++++|++||+++|.+||++|+++||||+||||||+
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHc
Q psy15251 245 IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 245 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~ 324 (720)
+|.+|++.++++++++|++.+.++++.+||.|++|+||++| .+|+|||||||||+|++|.+||++||+|+++.|+.++.
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd-~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~ 323 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVD-EDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAA 323 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEc-CCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999 88899999999999999999999999999999999999
Q ss_pred CCCCC------CCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeec-ccCCCeeCCCCCCceEEE
Q psy15251 325 GQELP------LKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKL 397 (720)
Q Consensus 325 G~~l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~-v~~G~~v~~~~d~~~a~v 397 (720)
|..|. ..|++|..+|+|++|||..|||.++|+|..|+|..++.++ +.|||+|.+ -..|..|++|||||+-|+
T Consensus 324 G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~g-GfGVRLD~Gn~~~GavItpyyDslLVK~ 402 (1149)
T COG1038 324 GATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAG-GFGVRLDGGNAYAGAVITPYYDSLLVKV 402 (1149)
T ss_pred cCccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCC-CceEEecCCcccccceeccccccceeeE
Confidence 99886 2466799999999999999999999999999999999998 799999954 568999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccc
Q psy15251 398 VVWDENRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQH 452 (720)
Q Consensus 398 i~~g~~~~ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 452 (720)
-+||.|.++|++||.|+|.+++|+|+.||++||.+++.||.|.+|+++|+|||..
T Consensus 403 t~~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~t 457 (1149)
T COG1038 403 TCWGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTT 457 (1149)
T ss_pred eecCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccCcceeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 4
>KOG0369|consensus
Probab=100.00 E-value=1.4e-101 Score=822.95 Aligned_cols=443 Identities=44% Similarity=0.760 Sum_probs=431.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCC-CCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK-SSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~-~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
.+||||+|||+|++|+.|+|.++|+++|++|+..|..+.|..-||++|.++.. +....|+.++.|+++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 46999999999999999999999999999999999999999999999999864 34589999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
|||||||+.+|+++|.++|+.|+||+++.+..|+||..+|.++.++|||+.|+..+++++.+|+.+|+++.|+|+|+|+.
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
+|+||+|||+|++.++++++|+++.+|+.++||++.++||+||+.++|++||.++|.+||++|+++||||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.++++++++|.+.+.++++.+||.+++++||++| ..|++||||+|||+|++|.+||.+||+||+..|+++|.|.
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD-~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~ 351 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVD-QKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGA 351 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEc-cCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCC
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred CCC---CCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeec-ccCCCeeCCCCCCceEEEEEEcC
Q psy15251 327 ELP---LKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKLVVWDE 402 (720)
Q Consensus 327 ~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~-v~~G~~v~~~~d~~~a~vi~~g~ 402 (720)
.|+ +.|+.+..+|++|+||+..|||.++|.|.+|+|+.++.-. +.|+|+|.. ...|..|+|+||||+-|+|++|.
T Consensus 352 tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSge-GmGiRLD~asafaGavIsPhYDSllVK~i~h~~ 430 (1176)
T KOG0369|consen 352 SLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGE-GMGIRLDGASAFAGAVISPHYDSLLVKVICHGS 430 (1176)
T ss_pred CcccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCC-CceEeecCccccccccccccccceEEEEEecCC
Confidence 776 7899999999999999999999999999999999999876 689999975 45799999999999999999999
Q ss_pred CHHHHHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccc
Q psy15251 403 NRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQH 452 (720)
Q Consensus 403 ~~~ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 452 (720)
|.+.+.++|.|||.+++|+|++|||+||.++|.+|.|.+|.++|.|||++
T Consensus 431 ~~~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~ 480 (1176)
T KOG0369|consen 431 TYEIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDET 480 (1176)
T ss_pred ccHHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeeeeeeeEEecCC
Confidence 99999999999999999999999999999999999999999999999987
No 5
>KOG0368|consensus
Probab=100.00 E-value=1.2e-95 Score=825.58 Aligned_cols=643 Identities=32% Similarity=0.513 Sum_probs=548.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcE---------EEEeeCC--CCCCcccccccEEEEeCCCCCcccccCHHHHHH
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRV---------VSVYSDI--DADALHVKMADEAYRLEGKSSLDTYLNQAKILD 74 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~---------v~v~s~~--d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~ 74 (720)
+.++||||+|+|-.|++.+|+.|++-|++ |+..+.. ..++-+.++||+.+.+|+.++.++|.|++.|++
T Consensus 52 rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdlIvd 131 (2196)
T KOG0368|consen 52 RVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVD 131 (2196)
T ss_pred ceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHHHHHH
Confidence 56899999999999999999999986553 3443332 377889999999999999999999999999999
Q ss_pred HHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCccc-------------
Q psy15251 75 IAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYH------------- 141 (720)
Q Consensus 75 ~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~------------- 141 (720)
+|++.++|||++|||..|||+.+.+++.+.||.|+||+..+|..++||..+.-+++.+|||+.|+.-
T Consensus 132 iAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~ 211 (2196)
T KOG0368|consen 132 IAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTN 211 (2196)
T ss_pred HHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999741
Q ss_pred -----------CCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEecccc
Q psy15251 142 -----------GEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ 210 (720)
Q Consensus 142 -----------~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~ 210 (720)
+.+.+.+|..+.++.+|||+|||++.||||||+|.|++.+|+...|+++..| +++.++++.+...
T Consensus 212 ~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlMK~a~ 287 (2196)
T KOG0368|consen 212 LVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMKLAD 287 (2196)
T ss_pred eEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeeeeccc
Confidence 1256788999999999999999999999999999999999999999998877 5589999999999
Q ss_pred CCceEEEEEEEcccccEEEEEeeeccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCc
Q psy15251 211 SPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGE 290 (720)
Q Consensus 211 g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~ 290 (720)
+.||+|||+++|++|+++.++.||||+||||||++|++|+...+.+..++|.+.|.++++-+||.+++|||+++.+++|+
T Consensus 288 ~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~ 367 (2196)
T KOG0368|consen 288 QARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGE 367 (2196)
T ss_pred CcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEecCCCCcccccccccccCcHHHHHHHHHcCCCCCC---------------------CCCCCCcCeeEEEEEEeec
Q psy15251 291 FYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPL---------------------KQEDLQLRGHSFETRIYAE 349 (720)
Q Consensus 291 ~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~~l~~---------------------~~~~~~~~g~ai~~ri~ae 349 (720)
|||+|.|||+|++||.||+++|+||+.+|+.+|+|.||.- .+..+.++||+++|||..|
T Consensus 368 fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsE 447 (2196)
T KOG0368|consen 368 YYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSE 447 (2196)
T ss_pred EEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeecc
Confidence 9999999999999999999999999999999999998741 1234577999999999999
Q ss_pred CCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec-cccCHH
Q psy15251 350 NPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG-LDTNIN 428 (720)
Q Consensus 350 ~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G-~~tn~~ 428 (720)
||+.+|.|++|+|..+++++ .+.++-++.|..|..|+.|.||++||++++|+||++|++.|.-||+++.|+| ++|+++
T Consensus 448 dPddgFkPSsG~v~eLnFrS-ssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~Ve 526 (2196)
T KOG0368|consen 448 DPDDGFKPSSGTVQELNFRS-SSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTVE 526 (2196)
T ss_pred CCCCCcCCCCCeeEEeccCC-CCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCchHH
Confidence 99999999999999999998 5889999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhccCccccccccccccccccccccccCCCCchHHHHHHHHHHHHHHhhhHHHHHhhccCCccccccccccccccch
Q psy15251 429 FLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLKQIQDAKLEKAKSNGNVFSLLTGFRMNHSHVK 508 (720)
Q Consensus 429 ~l~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (720)
||.+||...+|.++.++|+|||+.++..+.+..++ ..++.+++++... .+..+.. |
T Consensus 527 YLI~LLet~dF~~N~i~TgWLD~~Ia~kv~~~~p~--~~l~VvcgAa~~g--~~~~~~~------~-------------- 582 (2196)
T KOG0368|consen 527 YLIDLLETEDFESNKIDTGWLDKRIAMKVRAERPD--IMLAVVCGAAVKG--SSTSRTV------F-------------- 582 (2196)
T ss_pred HHHHHHHhhhhhhccCcchhHHHHHHHHhhccCCC--cceeeehhhhhhh--HHHHHHH------H--------------
Confidence 99999999999999999999999998877665442 1222222222221 0000000 0
Q ss_pred hhhHHHHHHHHHhhHHhhhhccCCcccccccccccCCceEEEEEEECCEEEEEEEEE-eCcEEEEEEeCCCeeEEEEeec
Q psy15251 509 TAALSLVLKQIQDAKLEKAKSNRNVFSLLTGFRMNHSHVKTVQIQHLNKEYNVQVTL-SAHTYRVSIRGDPSSELCIKNA 587 (720)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~v~i~~~~~~~v~~~~~ 587 (720)
.-....+++||.+..-+ ......+.|.+++..|.+.|.. +.++|.+.+ +|+...+..+
T Consensus 583 ---------~~y~~~LerGQV~p~~~---------L~~~~~vdli~e~~kY~lkV~rss~~~y~l~m-ngs~~~v~v~-- 641 (2196)
T KOG0368|consen 583 ---------EKYEHSLERGQVPPKDF---------LLNTFDVDLIYEGNKYTLKVVRSSSGTYVLRM-NGSEVTVGVH-- 641 (2196)
T ss_pred ---------HHHHHHHhcCCCCChHH---------hhhcceeEEEecCcEEEEEEEecCCceEEEEE-cCcEEEEEEE--
Confidence 01123466777653111 2345688999999999999998 889999999 9999888862
Q ss_pred ccccccCCceeEEEeeecCe-EEEEEEEECCeEEEEEcCceEEEEecCCCCCCCCCCCCCCCCCeeecCCcceeeEEecC
Q psy15251 588 SLTQVSKYGYELVAEGEKGR-IRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQ 666 (720)
Q Consensus 588 ~~~~~~~~~~~l~~~~i~g~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~g~v~~~~v~ 666 (720)
.+. +++.. +. ++|. ++.. ...+.+ .+++........- +. ..++..++||.||++++++|+
T Consensus 642 ~L~---dggLl--i~-~~Gks~t~y-~keev~--------~~rltIdn~t~~f--e~--enDpt~LrsPs~GKLl~ylVe 702 (2196)
T KOG0368|consen 642 QLS---DGGLL--IS-LDGKSYTIY-WKEEVD--------GYRLTIDNNTCLF--EK--ENDPTVLRSPSPGKLLQYLVE 702 (2196)
T ss_pred Eec---CCcEE--EE-ECCceEEEE-Eeeccc--------eEEEEECCeEEEE--ec--CCCcceecCCCCccceEEEec
Confidence 344 44433 34 7787 4322 112111 1222222111111 11 246778999999999999999
Q ss_pred CCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 667 PGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 667 ~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.|+.|.+||+.+.+|.|||.+++.|+.+|+|.- ..++|+.+.+|++|+.++
T Consensus 703 dG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~-i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 703 DGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQL-IKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCCceecCCeeeehehhheeeeeeccCCceEEE-ecCCCCccCccceeEEee
Confidence 999999999999999999999999999998874 479999999999999886
No 6
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=1.1e-95 Score=792.55 Aligned_cols=446 Identities=50% Similarity=0.862 Sum_probs=437.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|++||||+|+|+++++++|+|+++|+++|+||+++|..+.|..++|+.++++|.+..++|+|++.++.+|++.++|+|||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 68899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
||||+|||+.|+++|++.|+.|+||++++++.|+||..+|++|+++|||+||+..+.+.+.+++.++++++||||||||+
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999876678889999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+||++|++.+||.+++..+++++...|+++.+++||||++++|+++|+++|++|+++++++|||++||+|||+++
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
++|+|.++++.+.++.+.+.++++.+||+|++|+||+++ .+|+|||||||||+|++|++||++||+||+.+||++++|+
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~-~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge 319 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYD-SNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGE 319 (449)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe-CCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999 5688999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+++++|+++..+||+++|||++|||..+|.|++|.+..+..|. +++||+|+++..|.+|+++||||+||+|++|.+|++
T Consensus 320 ~l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~-g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ 398 (449)
T COG0439 320 PLSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPG-GPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDE 398 (449)
T ss_pred CCCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCC-CCceEEEeecccCcccCcchhhheeEEEEecCChHH
Confidence 9999999999999999999999999999999999999999997 699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccccc
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKD 454 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 454 (720)
|+.++.++|.++.|+|+.||++|++.++++++|.+|+++|+||++++.
T Consensus 399 ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 399 AIARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred HHHHHHHHHHheEecCccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 999999999999999999999999999999999999999999998754
No 7
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=3.6e-93 Score=852.95 Aligned_cols=450 Identities=44% Similarity=0.773 Sum_probs=431.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCC---CCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGK---SSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~---~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
||||+|||+||++++|+|+++|+++|++|+++|..+.|..+||+.|.+++. ....+|+|++.|+++|+++++|+|||
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999999999999999999765 33579999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
||||++|++.++..|++.|++|+||++++++.++||..+|++++++|||+||+....+.+.+++.++++++|||+||||.
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998754578999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+||++|++.+|+.++++.+.+++.+.|+++.++||+||++++|+++++++|++|+++++++|+|++||+|+++++
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.++++.+++|.+.+.++++++||.|++++||+++ ++|++||||||||+|++|+++|++||+|+++++++++.|.
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd-~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~ 319 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVD-NDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGA 319 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEe-CCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCC
Confidence 999988999999999999999999999999999999999 7788999999999999999999999999999999999999
Q ss_pred CCC------CCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeec-ccCCCeeCCCCCCceEEEEE
Q psy15251 327 ELP------LKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKLVV 399 (720)
Q Consensus 327 ~l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~-v~~G~~v~~~~d~~~a~vi~ 399 (720)
+|+ +.|+.+.++||||+|||++|||.++|.|++|+|..++.|. ++|||+|++ ..+|..|+++||||++|+|+
T Consensus 320 ~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~-g~gvr~d~~~~~~g~~v~~~yds~~~k~~~ 398 (1143)
T TIGR01235 320 SLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAG-GFGIRLDGGNSYAGAIITPYYDSLLVKVSA 398 (1143)
T ss_pred CCCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCC-CCCeEecccccCCCCCcCCcccchhhhhee
Confidence 998 6788899999999999999999999999999999999998 699999998 56999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccccccCCCC
Q psy15251 400 WDENRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLP 462 (720)
Q Consensus 400 ~g~~~~ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 462 (720)
||+||++|++||.+||++++|+|++||++||+++|+||+|++|+++|+||+++ ++||.-...
T Consensus 399 ~~~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t~~~~~~-~~l~~~~~~ 460 (1143)
T TIGR01235 399 WASTPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTT-PELFQFVKS 460 (1143)
T ss_pred eCCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccchhhhcC-hhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999 788765533
No 8
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=2.6e-92 Score=792.96 Aligned_cols=443 Identities=49% Similarity=0.865 Sum_probs=430.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|+|||||+|||++|++++++||++|+++|++|+++|.++.+.++||+.+.+++.....+|+|.+.|+++|++.++|+|||
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 58999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
||||++|++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998764478899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+||++|++.+||.++++.+.+++.+.|+++.+++|+||++++|+++++++|++|+++++++|+|++|++||++++
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999999998888889989999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
++|++.++++++++|.+.+.++++++||.|++++||+++ +|++||||||||+|++|+++|++||+||+++++++++|+
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~ 318 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGE 318 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCC
Confidence 999988999999999999999999999999999999998 578999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+|++.|.++..+||+|+||||+|||.++|.|++|+|..+..|. ++++|+|+++..|+.|+++||||+||+|++|+||++
T Consensus 319 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~-~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~ 397 (499)
T PRK08654 319 ELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPG-GPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREE 397 (499)
T ss_pred CCCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCC-CCCEEEECcccCCCCcCCccCchhheeeEeCCCHHH
Confidence 9999888889999999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccc
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQH 452 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 452 (720)
|++++.+||+++.|+|++||++||+++|+||+|++|+++|+||+++
T Consensus 398 a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~ 443 (499)
T PRK08654 398 AIARMRRALYEYVIVGVKTNIPFHKAVMENENFVRGNLHTHFIEEE 443 (499)
T ss_pred HHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 9999999999999999999999999999999999999999999998
No 9
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.1e-88 Score=819.04 Aligned_cols=445 Identities=47% Similarity=0.815 Sum_probs=426.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCC-CcccccCHHHHHHHHHHcCCCEE
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKS-SLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~-~~~~~~~~~~i~~~a~~~~~daI 84 (720)
+|||||||+|||++|++++++|+++|++++++|+++|..+++..+||+.|++++.. ...+|+|.+.|+++|+++++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 46899999999999999999999999999999999999999999999999998653 35799999999999999999999
Q ss_pred EeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEe
Q psy15251 85 HPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIK 164 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvK 164 (720)
||||||++|++.++++|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|+|
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987545789999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeE
Q psy15251 165 AVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKI 244 (720)
Q Consensus 165 p~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~ 244 (720)
|..|+||+||++|++.+||.++++.+.+++...|+++.+++|+||+|++|+++++++|++|+++++++|+|+++++|+++
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999999999988898899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHc
Q psy15251 245 IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 245 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~ 324 (720)
++.+|++.++++.+++|.+.+.++++++||.|++|+||+++ ++|++||||||||+|++|+++|++||+|++++++++++
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd-~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~ 321 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVD-ADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAE 321 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE-CCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHC
Confidence 99999988999999999999999999999999999999999 67789999999999999999999999999999999999
Q ss_pred CCCCCC------CCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeeccc-CCCeeCCCCCCceEEE
Q psy15251 325 GQELPL------KQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVI-EGDEVSVHYDPMISKL 397 (720)
Q Consensus 325 G~~l~~------~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~-~G~~v~~~~d~~~a~v 397 (720)
|.+++. .|+.+..+||||+|||++|||.++|.|.+|+|..++.|. ++++|+|+++. +|..|+++||||++|+
T Consensus 322 G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~-~~~vr~d~~~~~~g~~v~~~~Ds~l~kv 400 (1146)
T PRK12999 322 GATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPG-GFGVRLDGGNAFAGAEITPYYDSLLVKL 400 (1146)
T ss_pred CCCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCC-CCcEEeeccccCCCCeeCCCccCCceEE
Confidence 999875 466778899999999999999999999999999999998 68999999987 8999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccc
Q psy15251 398 VVWDENRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQH 452 (720)
Q Consensus 398 i~~g~~~~ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 452 (720)
|++|+||++|++++.+||++++|+|++||++||+++|+||+|++|+++|+||+++
T Consensus 401 i~~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 455 (1146)
T PRK12999 401 TAWGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTTSFIDET 455 (1146)
T ss_pred EEEcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999986
No 10
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=5.6e-87 Score=750.10 Aligned_cols=449 Identities=46% Similarity=0.782 Sum_probs=430.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|+|||||+|+|+++++++++|+++|++++++++++|..+.+.++||+.+++++.+. .+|+|.+.|+++|+++++|+|||
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p 79 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP 79 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence 58999999999999999999999999999999999999999999999999987654 89999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
||||++|+..++..|+++|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~ 159 (472)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT 159 (472)
T ss_pred CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998754578899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+||++|++.+||.++++.+.+++.+.|++..+++|+||++++|+++++++|++|+++++++|+|+++++++++++
T Consensus 160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e 239 (472)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 (472)
T ss_pred CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence 99999999999999999999999988888888888999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.++++.+++|.+.+.++++++||.|++++||+++ .+|++||+|||||+|++|+++++++|+|++++++++++|+
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d-~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~ 318 (472)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLD-ADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGL 318 (472)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEe-CCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCC
Confidence 999989999999999999999999999999999999998 6788999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+++..+.++..+||++++||++|||.++|.|++|+|..+..|+ +++||+|+++.+|+.|+++||||+||+|++|+||++
T Consensus 319 ~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~-~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~ 397 (472)
T PRK07178 319 PLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPG-GPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEE 397 (472)
T ss_pred CCCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCC-CCCeEEEecccCCCEeCcccCCccceEEEEcCCHHH
Confidence 9998888889999999999999999999999999999999998 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccccccC
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTR 459 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~~~~~ 459 (720)
|++++.++|++++|.|++||++||+++|+||+|++|+++|+||+++ .+++..
T Consensus 398 a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~ 449 (472)
T PRK07178 398 ALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNTSFVESH-PELTNY 449 (472)
T ss_pred HHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhhhcC
Confidence 9999999999999999999999999999999999999999999998 666443
No 11
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=1e-85 Score=740.46 Aligned_cols=450 Identities=45% Similarity=0.800 Sum_probs=429.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|+|||||+|+|+++++++++|+++|+++|++|+++|..+.+.++||+.|++++.+. .+|+|.+.|+++|++.++|+|||
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~-~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPI-KGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCch-hcccCHHHHHHHHHHhCCCEEEE
Confidence 58999999999999999999999999999999999999999999999999986553 88999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCC-CCCHHHHHHHHHHhCCcEEEee
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGE-DQNEEILMEQAERIGYPLMIKA 165 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~-~~s~~e~~~~~~~ig~PvvvKp 165 (720)
||||++|+..+++.|++.|++|+||++++++.++||..+|++|+++|||+||++... ..+.+++.++++++|||+|+||
T Consensus 80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999976522 3578899999999999999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEE
Q psy15251 166 VRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~ 245 (720)
..|+||+||++|++.+|+.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++++|+|+.+++|++++
T Consensus 160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i 239 (478)
T PRK08463 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence 99999999999999999999999988888888888999999999989999999999999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcC
Q psy15251 246 EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASG 325 (720)
Q Consensus 246 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G 325 (720)
+.+|++.++++++++|.+.+.++++++||.|++|+||+++ ++|++||+|||||+|++|+++|++||+|++++++++++|
T Consensus 240 e~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~-~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G 318 (478)
T PRK08463 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLD-DYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG 318 (478)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEc-CCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcC
Confidence 9999988999999999999999999999999999999999 678899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHH
Q psy15251 326 QELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRT 405 (720)
Q Consensus 326 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ 405 (720)
+++++.+..+.++||++++||++|||...|.|++|+|..+..|. ++++|+|+++.+|+.|+++|||++|++|++|+||+
T Consensus 319 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~-~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~ 397 (478)
T PRK08463 319 EILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPAL-GPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYD 397 (478)
T ss_pred CCCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCC-CCCeeEeccccCCCEeCcccccceeEEEEECCCHH
Confidence 99998877788899999999999999999999999999998887 58899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccccccC
Q psy15251 406 LALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTR 459 (720)
Q Consensus 406 ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~~~~~ 459 (720)
+|++++.++|+++.|+|++||++||+++|.||+|++|+++|+||++++++++..
T Consensus 398 ~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~ 451 (478)
T PRK08463 398 LAVNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLEK 451 (478)
T ss_pred HHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhccc
Confidence 999999999999999999999999999999999999999999999999998754
No 12
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=7.5e-86 Score=740.03 Aligned_cols=450 Identities=46% Similarity=0.760 Sum_probs=429.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
+|||||||+|+|+++++++++|+++|+++++++++.|..+.+.++||+.+.++|.....+|+|.+.|+++|++.++|+||
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 46899999999999999999999999999999999999999999999999988877888999999999999999999999
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEee
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp 165 (720)
|+|||++|++.++..|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||||+||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999873347899999999999999999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEE
Q psy15251 166 VRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~ 245 (720)
..|+||+||++|++.+||.++++.+.+++...|+++.++||+||++++|+++++++|++ +++++++|+|++++++++++
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999998888888888899999999988999999999876 68899999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcC
Q psy15251 246 EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASG 325 (720)
Q Consensus 246 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G 325 (720)
+++|++.++++.+++|.+.+.++++++||+|++|+||++++++|++||||||||+|++|+++++++|+|++++++++++|
T Consensus 242 e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G 321 (467)
T PRK12833 242 EEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADG 321 (467)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCC
Confidence 99998889999999999999999999999999999999984468899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHH
Q psy15251 326 QELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRT 405 (720)
Q Consensus 326 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ 405 (720)
+++++.+.++..+||++++|+++|||.++|.|++|.|..+.+|. ++|+|+|+++.+|+.|+++|||++||||++|+||+
T Consensus 322 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~-~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~ 400 (467)
T PRK12833 322 EPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQ-GPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRA 400 (467)
T ss_pred CCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCC-CCCeEEecceeCcCEeCCCcCcchheEEEEcCCHH
Confidence 99998888889999999999999999999999999999999998 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccccc
Q psy15251 406 LALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELL 457 (720)
Q Consensus 406 ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~~~ 457 (720)
+|++++.++|++++|.|++||++||+++|+||+|++|+++|+||++++++++
T Consensus 401 ~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 452 (467)
T PRK12833 401 AALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTNFLEAWLAEWR 452 (467)
T ss_pred HHHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999876653
No 13
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=7.5e-81 Score=697.91 Aligned_cols=445 Identities=50% Similarity=0.872 Sum_probs=425.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|||||||+|+|+++++++++||++|+++++++++.|..+++..+||+.+.+++....++|.|.+.|+++|++.++|+|+|
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 58999999999999999999999999999999988998999999999999887777789999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
+|||++|+..++.+++..|++++||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998533478999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+|+++|++.+|+.++++.+.+++...|+++.+++|+||+|++|+++++++|.+|+++++++++|+.+++++++++
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999999988887778778999999999889999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.+++++++++.+.+.+++++|||.|++++||+++ ++|++||+|||||++++|++++++||+|++++++++++|+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~-~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~ 319 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGE 319 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEc-CCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCC
Confidence 999888999999999999999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
++++.+.++..+||++++||++|+|...|.|.+|.+..+.+|. .+++|+++++.+|+.++++|||++|++|++|+|+++
T Consensus 320 ~l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~-~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~ 398 (447)
T PRK05586 320 KLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPG-GLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREE 398 (447)
T ss_pred CCCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCC-CCCeEeeccccCCCccCCccCchhheeEEEcCCHHH
Confidence 9998777788899999999999999999999999999999997 578999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccc
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHK 453 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~ 453 (720)
|++++.+||+++.|.|+.||++||+++|.||+|.+|+++|+||++++
T Consensus 399 a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 399 AIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred HHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 99999999999999999999999999999999999999999999875
No 14
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=1.2e-79 Score=689.07 Aligned_cols=446 Identities=48% Similarity=0.833 Sum_probs=424.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|||||||+|+|+++++++++||++|+++++++++++.++++..+||+.+.++|.....+|+|.+.|+++|++.++|+|+|
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 58999999999999999999999999999999988989999999999999877777789999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
++|+++|+..++..+++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|+||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998633378899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+|+++|++.+|+.++++.+.+++...++.+.++||+||+|++|++++++.|.+|+++++++++|+++++++++++
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999999887776667778999999999889999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.++++..++|.+.+.++++++||+|++|+||+++ ++|++||+|||||+++++++++.+||+|++++++++++|+
T Consensus 241 ~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~-~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~ 319 (449)
T TIGR00514 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLD-KNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGE 319 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEe-CCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCC
Confidence 999888999999999999999999999999999999999 7788999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+++..+..+..+|+|+++||+++||.+.|.|++|.+..+..|. ++|+|+++.+.+|+.++++||+++|++|++|+|++|
T Consensus 320 ~l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~-~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~e 398 (449)
T TIGR00514 320 PLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPG-GPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREV 398 (449)
T ss_pred CCCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCC-CCCEeeccCccCCCEeCccccccceEEEEEcCCHHH
Confidence 9998777778889999999999999999999999999999887 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccccc
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKD 454 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 454 (720)
|++++.+||++++|.|++||++||++++.||+|.+|+++|+||++++.
T Consensus 399 a~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 399 AIARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred HHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 999999999999999999999999999999999999999999998865
No 15
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=1.1e-77 Score=672.98 Aligned_cols=444 Identities=45% Similarity=0.773 Sum_probs=419.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
..||||||+|+|+++++++++||++|++||++++++|.++++.++||+.+.+++....++|.|.+.|+++|+++++|+|+
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~ 81 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIF 81 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEE
Confidence 35899999999999999999999999999999999999999999999999998887788999999999999999999999
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEee
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp 165 (720)
|++|+++|+..++..|+++|++++||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|+||
T Consensus 82 pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP 161 (445)
T PRK08462 82 PGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKA 161 (445)
T ss_pred ECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999764347889999999999999999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEE
Q psy15251 166 VRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~ 245 (720)
..|+||+|+++|++.+||.+++..+..++...|+++.+++|+||++++|++++++++.+|+++++++++|+.++++++.+
T Consensus 162 ~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~ 241 (445)
T PRK08462 162 AAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLI 241 (445)
T ss_pred CCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceE
Confidence 99999999999999999999999888777777877899999999988999999999988999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcC
Q psy15251 246 EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASG 325 (720)
Q Consensus 246 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G 325 (720)
+.+|++.++++.+++|.+.+.++++++||.|++|+||+++ ++|++||+|||||++++++++++++|+|++++++++++|
T Consensus 242 ~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~-~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G 320 (445)
T PRK08462 242 EESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLD-SNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEG 320 (445)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEe-CCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCC
Confidence 9999888999999999999999999999999999999999 667899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHH
Q psy15251 326 QELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRT 405 (720)
Q Consensus 326 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ 405 (720)
++++. +..+..+|+|+++|+++++|. .|.|.+|.+..+..|. ..++|++..+..|+.++++||+++|++|++|+|++
T Consensus 321 ~~l~~-~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~-~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ 397 (445)
T PRK08462 321 EELPS-QESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPG-GRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRN 397 (445)
T ss_pred CCccc-ccccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCC-CCCEEEccCcCCCCEeChhhccCccEEEEEcCCHH
Confidence 99873 334567899999999999995 4899999999998887 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccc
Q psy15251 406 LALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHK 453 (720)
Q Consensus 406 ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~ 453 (720)
+|++++.++++.++|+|++||++||+++|.||+|++|+++|+||++|+
T Consensus 398 ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 398 RAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred HHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 999999999999999999999999999999999999999999999874
No 16
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2e-76 Score=664.56 Aligned_cols=447 Identities=48% Similarity=0.817 Sum_probs=423.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|||||||+|+|+++++++++|+++|++++++++++|.++.+.++||+.+.++|....++|.|.+.|+++|++.++|+|+|
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 47999999999999999999999999999999998988888999999998877777789999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
++|+++|+..++..|++.|++++||++++++.++||..+|++++++|||+||+....+++.+++.++++++|||+|+||.
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997532378999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+|+++|++.+|+.++++.+..++...++++.+++|+||+|++|+++++++|++|+++++++++|+.+++++++++
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999999888777777778999999999889999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.++++.+++|.+.+.++++++||.|++|+||+++ ++|++||+|+|||+++++++++.++|+|++++++++++|+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~-~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~ 319 (451)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYE-KNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGE 319 (451)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEc-CCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCC
Confidence 999888999999999999999999999999999999999 6888999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+++..+.....+|+++++||++++|...|.|+.|.+..+..|. ++++|++..+.+|+.++++|||++|++|++|+|+++
T Consensus 320 ~l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~-~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~ 398 (451)
T PRK08591 320 PLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPG-GPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREE 398 (451)
T ss_pred CCCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCC-CCCeeecccccCCCCcCccccCcceEEEEEcCCHHH
Confidence 9987766677889999999999999999999999999999886 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCccccccccccccccccccc
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDE 455 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~~ 455 (720)
|++++.+++++++|+|++||++||+++|+||+|++|+++|+||+++++.
T Consensus 399 ~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 447 (451)
T PRK08591 399 AIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLAL 447 (451)
T ss_pred HHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCcccHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999988553
No 17
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=9.5e-74 Score=693.27 Aligned_cols=441 Identities=46% Similarity=0.776 Sum_probs=419.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
+|||||+|+|+++++++++|+++|+++++++++++..+.++.+||+.+.+++.+..++|.|.+.|+++|+++++|+||||
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 68999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
++|++|+..++..|++.|++|+||++++++.++||..+|++|+++|||++|++. .+++.+++.++++++||||||||..
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~-lv~s~dea~~~a~~igyPvVVKP~~ 159 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTG-LLSSLDEALEAAKEIGYPVMLKSTA 159 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee-ecCCHHHHHHHHHhcCCeEEEEECC
Confidence 999999999999999999999999999999999999999999999999988653 3689999999999999999999999
Q ss_pred CCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEE
Q psy15251 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247 (720)
Q Consensus 168 g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~ 247 (720)
|+||+||++|++.+|+.++++.+.+.+.+.|++..++||+||++++|+++++++|++|+++.++++||++++++++++++
T Consensus 160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee 239 (1201)
T TIGR02712 160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239 (1201)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence 99999999999999999999999888777788889999999998899999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCCC
Q psy15251 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQE 327 (720)
Q Consensus 248 ~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~~ 327 (720)
+|++.++++.+++|.+.+.++++++||+|++++||++++++|++||||||||+|++|++++.++|+|++++++++++|++
T Consensus 240 ~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~ 319 (1201)
T TIGR02712 240 TPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGEL 319 (1201)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCC
Confidence 99988999999999999999999999999999999998445789999999999999999999999999999999999998
Q ss_pred CCCCCCCC--CcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHH
Q psy15251 328 LPLKQEDL--QLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRT 405 (720)
Q Consensus 328 l~~~~~~~--~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ 405 (720)
+++.+... ...||++++|+|+|+|.++|.|+.|.+..+.+|. ++|++..+.+|++|+++||+++|++|++|.|++
T Consensus 320 ~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~---~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~ 396 (1201)
T TIGR02712 320 PDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPD---DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDRE 396 (1201)
T ss_pred CCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCC---eEEEeceecCCCEECCccCCCeEEEEEEECCHH
Confidence 88765443 5689999999999999999999999999888886 599999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccc
Q psy15251 406 LALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQH 452 (720)
Q Consensus 406 ea~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 452 (720)
+|++++.++|++++|.|+.||++||++++.+|+|++|+++|+||++.
T Consensus 397 eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 397 DAILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred HHHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 99999999999999999999999999999999999999999999764
No 18
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.4e-66 Score=583.18 Aligned_cols=445 Identities=46% Similarity=0.820 Sum_probs=410.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|+|||||+|+|+.++.++++++++|+++++++++++..+.+.++||+.+.+++....++|.|.+.++++|++.++|+|+|
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 58999999999999999999999999999999888888888999999999877666789999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
++++++|+..++..++..|++++||++++++.++||..+|++|+++|||+||+....+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999889999999999999999999999999999999999999999997322368899999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+|+++|++.+|+.++++.+..++...++++++++|+||+|++|++++++.+.+|+++.++.++|+.+++|++.++
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999998776555556678999999999889999999999889999999999999888888888
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|++.+++++.+++.+.+.++++++||.|++|+||+++ ++|++||+|||||+++++++++.++|+|++++++++++|+
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~-~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~ 319 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVD-EQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGE 319 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEc-CCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCC
Confidence 899888899999999999999999999999999999999 6777999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+++..+......++++..++|++++. .+.|..|.+..+..|. .++++++..+..|+++++.+|+++|+++++|.|+++
T Consensus 320 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~-~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~e 397 (450)
T PRK06111 320 KLSFTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPG-GEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREE 397 (450)
T ss_pred CCCCccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCC-CCCEEEEecccCCCEeChhhcccceEEEEEeCCHHH
Confidence 98876656667789999999999875 4678889987777665 467999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEeccccCHHHHHHhccCcccccccccccccccccc
Q psy15251 407 ALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKD 454 (720)
Q Consensus 407 a~~~~~~al~~~~i~G~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 454 (720)
|.+++.++++.++++|++||+++|+.+|++|+|.+|.++|+||+..+.
T Consensus 398 a~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (450)
T PRK06111 398 AISRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLV 445 (450)
T ss_pred HHHHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCCcccchHHhhhhh
Confidence 999999999999999999999999999999999999999999987643
No 19
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.1e-43 Score=431.68 Aligned_cols=378 Identities=21% Similarity=0.309 Sum_probs=312.0
Q ss_pred CCCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHH
Q psy15251 6 CVLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILD 74 (720)
Q Consensus 6 ~~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~ 74 (720)
..+|||||+|+|.+ +..++++|+++|+++|+++++++....+..++|+.|..| .+.+.|.+
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~ 75 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEK 75 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC--------CCHHHHHH
Confidence 35799999999985 457999999999999999999988778888999998764 46789999
Q ss_pred HHHHcCCCEEEeCCCCC-----cccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHH
Q psy15251 75 IAVRSQCQAIHPGYGFL-----SENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEI 149 (720)
Q Consensus 75 ~a~~~~~daI~pg~g~l-----sE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e 149 (720)
+++++++|+|+|++|+. ++....+..+++.|++++|+++++++.+.||..+|++|+++|+|+|++.. +++.++
T Consensus 76 ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~--v~s~~e 153 (1050)
T TIGR01369 76 IIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEI--AHSVEE 153 (1050)
T ss_pred HHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeee--cCCHHH
Confidence 99999999999998752 22234466899999999999999999999999999999999999999987 899999
Q ss_pred HHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEE
Q psy15251 150 LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY 229 (720)
Q Consensus 150 ~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~ 229 (720)
+.++++++|||+||||..|.||+|++++++.+|+.+++..+...+ ..+.++||+||+|.+|++++++.|.+|+++.
T Consensus 154 ~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~ 229 (1050)
T TIGR01369 154 ALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCIT 229 (1050)
T ss_pred HHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEEE
Confidence 999999999999999999999999999999999999988766431 1368999999998899999999999888887
Q ss_pred EEeeeccccc------cceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc
Q psy15251 230 LYERDCSVQR------RHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE 303 (720)
Q Consensus 230 ~~~r~~s~~r------~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~ 303 (720)
+ |++++ +..+.+..+|+..++++..+++.+.+.+++++|||.|.+++||++++++|++|++|||||++++
T Consensus 230 ~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~s 305 (1050)
T TIGR01369 230 V----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSRS 305 (1050)
T ss_pred E----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCcc
Confidence 6 34444 2345667789877899999999999999999999999999999999545889999999999999
Q ss_pred cccccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceee--eeCCCCCCcEEEeeccc
Q psy15251 304 HPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTH--LRPPEHSDTIRIETGVI 381 (720)
Q Consensus 304 ~~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~--~~~p~~~~~vr~d~~v~ 381 (720)
+.+++++||+||.+..+++++|.+|...+.++.. +++ ..|.|+.+.|.. .++|- ....+.++..
T Consensus 306 ~~l~s~atG~pl~~~~~~~alG~~l~~~~n~i~g-----------~~~-~~~~p~~~~~~~k~p~~~~-~~~~~~~~~~- 371 (1050)
T TIGR01369 306 SALASKATGYPIAKVAAKLAVGYGLDELKNPVTG-----------TTP-ASFEPSLDYVVVKIPRWDF-DKFAGVDRKL- 371 (1050)
T ss_pred hhhhhHHhCCCHHHHHHHHHcCCCchhhcCCCcC-----------cCc-cccCcCCCeEEEEEEeCCC-CCCCcccCCc-
Confidence 8899999999999999999999998755443332 233 246788777432 23332 1222333222
Q ss_pred CCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec
Q psy15251 382 EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422 (720)
Q Consensus 382 ~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G 422 (720)
|... . ++|+++++|+|++||++++.++|+. ...|
T Consensus 372 -~~~~----k-~~G~v~~~g~~~~ea~~ka~~~~~~-~~~~ 405 (1050)
T TIGR01369 372 -GTQM----K-SVGEVMAIGRTFEEALQKALRSLEI-GATG 405 (1050)
T ss_pred -Cccc----c-eeeEEEEECCCHHHHHHHHHHHhcc-CCCC
Confidence 3221 1 4699999999999999999999986 3344
No 20
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=1.6e-44 Score=360.90 Aligned_cols=209 Identities=50% Similarity=0.742 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCC
Q psy15251 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFND 200 (720)
Q Consensus 121 DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~ 200 (720)
||..++++++++|||+||+....+++.+++.++++++|||++|||++|+||+||+++++.++|.++++.+.+++..+|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999999854599999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEE
Q psy15251 201 SKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTV 280 (720)
Q Consensus 201 ~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 280 (720)
.+++||+|+++.+|++||+++|++|+++++++|||+.|+++|+.++++|++.++++.+++|.+.+.++++++||.|++|+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCCCCC
Q psy15251 281 EFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELP 329 (720)
Q Consensus 281 Ef~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~~l~ 329 (720)
||++++.++++||||||||+|++||++|++||+||+++++++++|++|+
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 9999954899999999999999999999999999999999999999886
No 21
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=6.7e-43 Score=422.90 Aligned_cols=323 Identities=20% Similarity=0.272 Sum_probs=271.6
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHH
Q psy15251 7 VLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 7 ~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
.+|||||+|+|++ ++.++++||++|+++++++++++..+.+..++|+.|+++ ++.+.|+++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~p--------l~~e~vl~i 644 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEP--------LTVEDVLNV 644 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEe--------CCHHHHHHH
Confidence 5789999999985 345999999999999999999999999999999999863 789999999
Q ss_pred HHHcCCCEEEeCCCC-------------CcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccC
Q psy15251 76 AVRSQCQAIHPGYGF-------------LSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHG 142 (720)
Q Consensus 76 a~~~~~daI~pg~g~-------------lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~ 142 (720)
|+++++|+|+|++|. ++|+..|++ +...|+.++||++++++.+.||..+|++|+++|||+||+..
T Consensus 645 ~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~- 722 (1102)
T PLN02735 645 IDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGI- 722 (1102)
T ss_pred HHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeE-
Confidence 999999999999983 222222222 33458999999999999999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEc
Q psy15251 143 EDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD 222 (720)
Q Consensus 143 ~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d 222 (720)
+.+.+++.++++++||||||||++|+||+||++|++.+||.++++.+.+. +++++++||+||++++|++|++++|
T Consensus 723 -v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D 797 (1102)
T PLN02735 723 -ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALAD 797 (1102)
T ss_pred -eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEEC
Confidence 88999999999999999999999999999999999999999999988754 3456899999999889999999999
Q ss_pred ccccEEEEEeeecccc-ccc-eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCC
Q psy15251 223 RYGNYVYLYERDCSVQ-RRH-QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRL 300 (720)
Q Consensus 223 ~~G~~v~~~~r~~s~~-r~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~ 300 (720)
++|+++...-.+.... ..| .......|++.++++.+++|.+.+.+++++|||.|++++||+++ ++|++||+|+|||+
T Consensus 798 ~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~-~dg~~yviEiNpR~ 876 (1102)
T PLN02735 798 SEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAIT-PSGEVYIIEANPRA 876 (1102)
T ss_pred CCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEc-CCCcEEEEEEeCCC
Confidence 8888775432211000 001 12233467778999999999999999999999999999999998 67889999999999
Q ss_pred CcccccccccccCcHHHHHHHHHcCCCCC---CCCCCCCcCeeEEEEEE
Q psy15251 301 QVEHPVSEMITGVDLVQWQLMVASGQELP---LKQEDLQLRGHSFETRI 346 (720)
Q Consensus 301 ~~~~~~~e~~tGvdl~~~~l~~a~G~~l~---~~~~~~~~~g~ai~~ri 346 (720)
++++|+++.+||+|++++++++++|++|. +.+++. ....++.+++
T Consensus 877 s~t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~~-~~~~~vk~~v 924 (1102)
T PLN02735 877 SRTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEVI-PAHVSVKEAV 924 (1102)
T ss_pred CccHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCcccc-cCeEEEEecc
Confidence 99999999999999999999999999864 333222 2344666655
No 22
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=2.4e-42 Score=418.02 Aligned_cols=380 Identities=20% Similarity=0.286 Sum_probs=303.9
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHH
Q psy15251 7 VLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 7 ~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
.+|||||+|+|++ +..++++|+++|++|++++++++.......++|+.|..| .+.+.+.++
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p--------~~~e~v~~i 93 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAP--------MTPELVEQV 93 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCC--------CCHHHHHHH
Confidence 5789999999986 456999999999999999988876655667899988643 467889999
Q ss_pred HHHcCCCEEEeCCCCC-cccHHH----HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHH
Q psy15251 76 AVRSQCQAIHPGYGFL-SENAEF----ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEIL 150 (720)
Q Consensus 76 a~~~~~daI~pg~g~l-sE~~~~----a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~ 150 (720)
++++++|+|+|++|.. .++... ...++.+|++++|+++++++.+.||..+|++|+++|||+|++.. +.+.+++
T Consensus 94 i~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~--v~s~eea 171 (1102)
T PLN02735 94 IAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGI--ATTLDEC 171 (1102)
T ss_pred HHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeE--eCCHHHH
Confidence 9999999999987532 222211 24678899999999999999999999999999999999999987 8899999
Q ss_pred HHHHHHhC-CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEE
Q psy15251 151 MEQAERIG-YPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY 229 (720)
Q Consensus 151 ~~~~~~ig-~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~ 229 (720)
.++++++| ||+||||+.+.||+|+.+|++.+||.++++.+... ..++.++||+||.|.+|++++++.|..|+++.
T Consensus 172 ~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 172 FEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 99999998 99999999999999999999999999999876532 23679999999998799999999998788765
Q ss_pred EEeeeccccc------cceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC-cceeEEEEEEeCCCCcEEEEEecCCCCc
Q psy15251 230 LYERDCSVQR------RHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRY-HNAGTVEFIMDPSSGEFYFMEMNTRLQV 302 (720)
Q Consensus 230 ~~~r~~s~~r------~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~-~G~~~vEf~~~~~~g~~~~iEiNpR~~~ 302 (720)
+. ++.+ +....+..+|++.++++..++|.+++.+++++||+ .|.+++||++++.+|++||+|||||+++
T Consensus 248 v~----~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ 323 (1102)
T PLN02735 248 IC----SIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSR 323 (1102)
T ss_pred Ee----eEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCC
Confidence 53 3332 12345667898779999999999999999999999 6999999999955789999999999999
Q ss_pred ccccccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccC
Q psy15251 303 EHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIE 382 (720)
Q Consensus 303 ~~~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~ 382 (720)
++++.+++||+|+++.++++++|.+|...+.++..... ..|.|+...+. .+.|.+ +.-++. ..
T Consensus 324 ss~l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~~------------a~~ep~~d~~~-~k~p~~-~f~~f~---~~ 386 (1102)
T PLN02735 324 SSALASKATGFPIAKMAAKLSVGYTLDQIPNDITLKTP------------ASFEPSIDYVV-TKIPRF-AFEKFP---GS 386 (1102)
T ss_pred cchhhhhhhCCCHHHHHHHHHCCCChhhhccccccccc------------hheeecCCcEE-EEcccC-Cccccc---CC
Confidence 99999999999999999999999998755444332211 14677766554 455543 211210 00
Q ss_pred CCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecc
Q psy15251 383 GDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGL 423 (720)
Q Consensus 383 G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~ 423 (720)
...+.+..- ..|.+++.|+|.+||+.|+.+.|+. ...|+
T Consensus 387 ~~~l~~~mk-s~ge~m~~gr~~~ea~~ka~~~~~~-~~~~~ 425 (1102)
T PLN02735 387 QPILTTQMK-SVGEAMALGRTFQESFQKALRSLET-GFSGW 425 (1102)
T ss_pred Ccccceeee-ecceEEEecCCHHHHHHHHHHHhcC-CCCCC
Confidence 111111000 1399999999999999999999964 44554
No 23
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=1.4e-41 Score=374.13 Aligned_cols=379 Identities=16% Similarity=0.189 Sum_probs=292.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
||||+|+|..++.++++|+++|+++++++++++.+ ...++|+.+.+ ++.|.+.+.++|+++++|+|+|..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~--~~~~ad~~~~~-------~~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSYVI-------NMLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc--hhhhCceEEEc-------CCCCHHHHHHHHHHhCCCEEEeccC
Confidence 69999999999999999999999999997766554 45679998865 4678899999999999999999887
Q ss_pred CCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHH-HHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCC
Q psy15251 90 FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM-IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRG 168 (720)
Q Consensus 90 ~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l-~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g 168 (720)
.+. ......+++.|++ +.|++++++++.||..+|+++ +++|||+|++.. +.+.+++.++++++|||+|+||..|
T Consensus 72 ~v~--~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~--~~~~~~~~~~~~~~g~P~VvKP~~g 146 (380)
T TIGR01142 72 AIA--TDALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYMF--ADSLDELREAVEKIGYPCVVKPVMS 146 (380)
T ss_pred ccC--HHHHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceE--eCCHHHHHHHHHHcCCCEEEEECCC
Confidence 654 3334567888976 458999999999999999986 899999999987 8899999999999999999999999
Q ss_pred CCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEEc
Q psy15251 169 GGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA 248 (720)
Q Consensus 169 ~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~ 248 (720)
+||+|+++|++.+|+.++++.+...++ ..++++|+|+||+++.|+++.++.+.+|++...... ...+..........
T Consensus 147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 223 (380)
T TIGR01142 147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPI-GHRQIDGDYHESWQ 223 (380)
T ss_pred cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCc-ceEEeCCeeEEEEC
Confidence 999999999999999999988754221 124689999999987899999887766765442111 11222222223456
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCCCC
Q psy15251 249 PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQEL 328 (720)
Q Consensus 249 Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~~l 328 (720)
|+ .++++..+++.+.+.+++++||+.|++|+||+++ ++ .+|++|+|||++++...+-..+|+|+++++++.++|.++
T Consensus 224 p~-~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~-~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~ 300 (380)
T TIGR01142 224 PQ-EMSEKALEEAQRIAKRITDALGGYGLFGVELFVK-GD-EVIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPI 300 (380)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CC-cEEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCC
Confidence 77 5899999999999999999999999999999999 54 599999999998763333334499999999999999988
Q ss_pred CCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHHHH
Q psy15251 329 PLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLAL 408 (720)
Q Consensus 329 ~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~ 408 (720)
+.. ...+.+....+.++... -......+.... . .+++++....++|.. ....+|+|++.|+|.+++.
T Consensus 301 ~~~----~~~~~~~~~~i~~~~~g--~~~~~~~~~~~~--~-~~~~~~~~~~k~~~~----~~~~~G~v~~~~~s~~~~~ 367 (380)
T TIGR01142 301 PGI----PQLGPAASAVIKAKVTG--YSPAFRGLEKAL--S-VPNTQVRLFGKPEAY----VGRRLGVALATAKSVEAAR 367 (380)
T ss_pred CCc----cccCCceEEEEEccccc--ccchhhHHHHHH--c-CCCCEEEECCCCcCC----CCCcCEEEEEecCCHHHHH
Confidence 743 23444555556654321 111111111111 1 245566555555533 2355699999999999999
Q ss_pred HHHHHHhhcceEe
Q psy15251 409 NKMKQALSQYQIA 421 (720)
Q Consensus 409 ~~~~~al~~~~i~ 421 (720)
+++.++++.++|+
T Consensus 368 ~~~~~~~~~i~~~ 380 (380)
T TIGR01142 368 ERAEEVAHAVEVR 380 (380)
T ss_pred HHHHHHHhhccCC
Confidence 9999999988764
No 24
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=1.3e-41 Score=387.51 Aligned_cols=380 Identities=16% Similarity=0.168 Sum_probs=302.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
.+.|||+|+|+|..+..++++++++|+++++++.+++ ++...++|+.+.. +|.|.+.+.+++++ +|+|.
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~--apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvIt 88 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED--CPASSVAARHVVG-------SFDDRAAVREFAKR--CDVLT 88 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEEE
Confidence 4578999999999999999999999999999966554 5556779987753 67899999999988 67776
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEee
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp 165 (720)
+..... +......+++.|++ ++|+++++..++||..+|++|+++|||+|++.. +.+.+++.++++++|||+|+||
T Consensus 89 ~e~e~v--~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~--v~~~~el~~~~~~ig~P~VvKP 163 (577)
T PLN02948 89 VEIEHV--DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFME--IDDLESAEKAGDLFGYPLMLKS 163 (577)
T ss_pred EecCCC--CHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEE--eCCHHHHHHHHHhcCCcEEEEe
Confidence 543332 24556888999987 479999999999999999999999999999987 8899999999999999999999
Q ss_pred cCCC-CCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeE
Q psy15251 166 VRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKI 244 (720)
Q Consensus 166 ~~g~-Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~ 244 (720)
..++ +|+|++++++.+|+.++++.+.. + +.++++|+||++.+|++|.++.+.+|++.++ ...+..++.+...
T Consensus 164 ~~ggs~g~Gv~~v~~~~eL~~a~~~~~~-----~-~~~vlvEefI~~~~EisV~v~r~~~G~i~~~-p~~E~~~~~~~~~ 236 (577)
T PLN02948 164 RRLAYDGRGNAVAKTEEDLSSAVAALGG-----F-ERGLYAEKWAPFVKELAVMVARSRDGSTRCY-PVVETIHKDNICH 236 (577)
T ss_pred CCCCCCCCCeEEECCHHHHHHHHHHhhC-----C-CCcEEEEecCCCCeEEEEEEEECCCCCEEEe-cCcccEEECCeeE
Confidence 9887 79999999999999999887642 1 5689999999988999999999888877653 3233444444444
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHc
Q psy15251 245 IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 245 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~ 324 (720)
....|+ .++++..+++.+.+.+++++||++|.+++||+++ ++|.+||+|+|||++++..++...+++|+++.+++.++
T Consensus 237 ~~~~Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~-~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~l 314 (577)
T PLN02948 237 VVEAPA-NVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLL-KDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVL 314 (577)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEc-CCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHc
Confidence 556788 6999999999999999999999999999999999 78899999999999976445556779999999999999
Q ss_pred CCCCCCCCCCCCcCeeEEEEEEeecCCC-CCCCCCCcceee-eeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcC
Q psy15251 325 GQELPLKQEDLQLRGHSFETRIYAENPY-EGFLPGAGNLTH-LRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDE 402 (720)
Q Consensus 325 G~~l~~~~~~~~~~g~ai~~ri~ae~p~-~~f~p~~g~i~~-~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~ 402 (720)
|.|++... ....+++...+..++.. .++.+....+.. ...| ++++....++|.+. ...+|++++.|.
T Consensus 315 Glpl~~~~---~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p----~~~v~~ygk~~~r~----~rkmGhV~~~g~ 383 (577)
T PLN02948 315 GLPLGDTS---MKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIP----GASVHWYGKPEMRK----QRKMGHITVVGP 383 (577)
T ss_pred CCCCCCcc---ccCCcEEEEEEeccccccccccchhhHHHHHhhCC----CCEEEEecCCCCCC----CCeeEEEEEecC
Confidence 99988542 23355788888887532 233333222222 2333 33444333334322 245699999999
Q ss_pred CHHHHHHHHHHHhhcceEe
Q psy15251 403 NRTLALNKMKQALSQYQIA 421 (720)
Q Consensus 403 ~~~ea~~~~~~al~~~~i~ 421 (720)
|++++.++++.+++.+.+.
T Consensus 384 ~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 384 SAAEVEARLDQLLAEESAD 402 (577)
T ss_pred CHHHHHHHHHHHHhhhccC
Confidence 9999999999999876654
No 25
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=1.6e-40 Score=363.47 Aligned_cols=362 Identities=21% Similarity=0.284 Sum_probs=287.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
|++|+|+|+|..+..++.+++++|+++++++.+++. +...++|+.+.. +|.|.+.+.++++ .+|+|.+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~--pa~~~ad~~~~~-------~~~D~~~l~~~a~--~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS--PAAQVADEVIVA-------DYDDVAALRELAE--QCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--chhHhCceEEec-------CCCCHHHHHHHHh--cCCEEEeC
Confidence 569999999999999999999999999999655554 446679988763 6789999999997 57878654
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
.+.. .......+++. ..++|++++++.++||..+|++++++|||+||+.. +.+.+++.++++++|||+|+||..
T Consensus 71 ~e~i--~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--v~s~~~l~~~~~~~g~P~vlKp~~ 144 (372)
T PRK06019 71 FENV--PAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAV--VDSAEDLEAALADLGLPAVLKTRR 144 (372)
T ss_pred cCCC--CHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceE--eCCHHHHHHHHHHcCCcEEEEeCC
Confidence 4332 23444445555 34679999999999999999999999999999988 899999999999999999999998
Q ss_pred CC-CCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 168 GG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 168 g~-Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
|+ +|+|++++++.+|+.++++.+ ++.++++|+||++++|+++.++.+.+|++.++.. ....++.+.....
T Consensus 145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~-~e~~~~~gi~~~~ 215 (372)
T PRK06019 145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPL-VENVHRNGILRTS 215 (372)
T ss_pred CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCC-cccEEeCCEEEEE
Confidence 65 899999999999999888764 2578999999998899999999988888765421 1123333333335
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
..|+ .+++++.+++.+.+.+++++|||+|++++||+++ ++|++||+|+|||++++..++..++++|+++.+++..+|.
T Consensus 216 ~~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~-~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Gl 293 (372)
T PRK06019 216 IAPA-RISAELQAQAEEIASRIAEELDYVGVLAVEFFVT-GDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGL 293 (372)
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEc-CCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCC
Confidence 6787 6899999999999999999999999999999999 7888999999999998866788889999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEe--ecccCCCeeCCCCCCceEEEEEEcCCH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIE--TGVIEGDEVSVHYDPMISKLVVWDENR 404 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d--~~v~~G~~v~~~~d~~~a~vi~~g~~~ 404 (720)
|++. +...+.+++..|..++. . ..+....+..|.. .++++ ...++|.++ |++.+.|.|.
T Consensus 294 pl~~----~~~~~~~~m~nilg~~~---~--~~~~~~~~~~~~~--~~~~ygk~~~~~~rk~--------Ghv~~~~~~~ 354 (372)
T PRK06019 294 PLGT----TRLLSPAVMVNLLGDDW---L--EPRWDALLALPGA--HLHLYGKAEARPGRKM--------GHVTVLGDDV 354 (372)
T ss_pred CCCC----ccccCceEEEEEECchh---h--hhHHHHHhhCCCC--EEEECCCCCCCCCCce--------EEEEeecCCH
Confidence 8873 24455577777776541 0 0111111223331 33443 124566666 9999999999
Q ss_pred HHHHHHHHHHhh
Q psy15251 405 TLALNKMKQALS 416 (720)
Q Consensus 405 ~ea~~~~~~al~ 416 (720)
+++.++++++..
T Consensus 355 ~~~~~~~~~~~~ 366 (372)
T PRK06019 355 EALLAKLEALAP 366 (372)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 26
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=7.5e-40 Score=362.24 Aligned_cols=382 Identities=18% Similarity=0.203 Sum_probs=287.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
.++|||+|+|..+..++++++++|+++++++.+++.++ ..++|..+.+ ++.|.+.+++++++.++|+|+|+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~--~~~ad~~~~~-------~~~d~~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPA--MQVAHRSHVI-------DMLDGDALRAVIEREKPDYIVPE 82 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCch--HHhhhheEEC-------CCCCHHHHHHHHHHhCCCEEEEe
Confidence 46899999999999999999999999999977665544 4478887765 35688999999999999999998
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHH-HCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI-KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~-~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
.+... ......+++.|+++ .|+++++++++||..+|+++. ++|||+|++.. +++.+++.++++++|||+|+||.
T Consensus 83 ~e~~~--~~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~--~~s~~~l~~~~~~~g~P~VvKP~ 157 (395)
T PRK09288 83 IEAIA--TDALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRF--ADSLEELRAAVEEIGYPCVVKPV 157 (395)
T ss_pred eCcCC--HHHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceE--ECCHHHHHHHHHhcCCCEEEEeC
Confidence 77543 33345567778875 489999999999999999994 89999999987 89999999999999999999999
Q ss_pred CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 167 RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 167 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
.|+||+|+++|++.+|+.++++.+....+ -.++.+||||||+++.|+++.++.+.+|...++...+ ...........
T Consensus 158 ~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 234 (395)
T PRK09288 158 MSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQEDGDYRES 234 (395)
T ss_pred CCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-cEEECCEEEEE
Confidence 99999999999999999999988754321 0136899999999778999999998765555442211 01111112223
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
..|+ .++++..+++.+.+.+++++||++|++|+||+++ ++ .+|++|+|||+++....+-..+|+|+++++++.++|.
T Consensus 235 ~~p~-~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~-~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~ 311 (395)
T PRK09288 235 WQPQ-PMSPAALEEAQEIAKKVTDALGGRGLFGVELFVK-GD-EVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGL 311 (395)
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe-CC-eEEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCC
Confidence 4677 5899999999999999999999999999999999 55 5999999999997644333344999999999999998
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTL 406 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~e 406 (720)
+++.. ...+.+..+.++++.+.. ......+..... .+|+++....+ ........+|++++.|+|.++
T Consensus 312 ~~~~~----~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~---~~g~~~~~~~k----~~~~~~~~lG~v~~~g~~~~~ 378 (395)
T PRK09288 312 PIPDI----RLYSPAASAVILAEGESA--NPSFDGLAEALA---VPGTDVRLFGK----PEIRGGRRMGVALATGEDVEE 378 (395)
T ss_pred CCCcc----cccCCceeEEEecccccc--ccchhhHHHHhc---CCCCEEEEecC----CCCCCCCeeEEEEeecCCHHH
Confidence 77422 223334444566553321 011111111111 23444322111 011223445999999999999
Q ss_pred HHHHHHHHhhcceEec
Q psy15251 407 ALNKMKQALSQYQIAG 422 (720)
Q Consensus 407 a~~~~~~al~~~~i~G 422 (720)
|.++++++++.+++.|
T Consensus 379 a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 379 AREKAKEAASKVKVVG 394 (395)
T ss_pred HHHHHHHHHhheeecc
Confidence 9999999999999987
No 27
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.9e-40 Score=402.19 Aligned_cols=400 Identities=22% Similarity=0.288 Sum_probs=308.2
Q ss_pred CCCccCCCCEEEEEcCcHHH-----------HHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCH
Q psy15251 1 MTIASCVLDSILIANRGEIA-----------CRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQ 69 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~G~~a-----------~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~ 69 (720)
|++. ..++||||+|+|++. ..++++|+++|++++++++++.....+..++|+.|..+ .+.
T Consensus 1 m~~~-~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p--------~~~ 71 (1066)
T PRK05294 1 MPKR-TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP--------ITP 71 (1066)
T ss_pred CCCC-CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECC--------CCH
Confidence 4443 358999999999974 46999999999999999888877666778899988754 467
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCc-ccH--HH--HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCC
Q psy15251 70 AKILDIAVRSQCQAIHPGYGFLS-ENA--EF--ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144 (720)
Q Consensus 70 ~~i~~~a~~~~~daI~pg~g~ls-E~~--~~--a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~ 144 (720)
+.+.++++++++|+|+|+.|... .+. .+ ...+++.|++++||++++++.+.||..+|++|+++|+|+|++.. +
T Consensus 72 e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~--v 149 (1066)
T PRK05294 72 EFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGI--A 149 (1066)
T ss_pred HHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeee--e
Confidence 89999999999999999876421 111 12 23578899999999999999999999999999999999999987 8
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccc
Q psy15251 145 QNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY 224 (720)
Q Consensus 145 ~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~ 224 (720)
++.+++.++++++|||+||||..|.||+|+++|++.+|+.+++++..... ..+.++||+||+|.+|+++.++.|.+
T Consensus 150 ~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~ 225 (1066)
T PRK05294 150 HSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKN 225 (1066)
T ss_pred CCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999888654321 24689999999988899999999998
Q ss_pred ccEEEEEeeecccccc-----c-eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEeCCCCcEEEEEec
Q psy15251 225 GNYVYLYERDCSVQRR-----H-QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYH-NAGTVEFIMDPSSGEFYFMEMN 297 (720)
Q Consensus 225 G~~v~~~~r~~s~~r~-----~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~~~~~g~~~~iEiN 297 (720)
|+++.+. ..++. | ...+..+|+..++++..+++.+.+.+++++|||. |.+++||++++.+|++|++|+|
T Consensus 226 g~~~~~~----~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiN 301 (1066)
T PRK05294 226 DNCIIVC----SIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMN 301 (1066)
T ss_pred CCEEEEe----eeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEee
Confidence 9888764 22221 1 3345667886789999999999999999999998 9999999999557889999999
Q ss_pred CCCCcccccccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEe
Q psy15251 298 TRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIE 377 (720)
Q Consensus 298 pR~~~~~~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d 377 (720)
||++++..++..+||++|.+..++.++|.++......+.....+ .|.|....+. +..|.+.-+..-.
T Consensus 302 PR~~~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~n~~~g~~~~------------~~~p~~~~v~-~k~p~~~~~~y~k 368 (1066)
T PRK05294 302 PRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIKNDITGKTPA------------SFEPSLDYVV-TKIPRFAFEKFPG 368 (1066)
T ss_pred cCCCcceeeeeHhhCCCHHHHHHHHHcCCChHHhcCcccCCCcc------------cccccCCeEE-EEccCCccccccC
Confidence 99999888888899999999999999999875432222111111 2334444422 2345431110001
Q ss_pred ecccCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecccc------CHHHHHHhccCcc
Q psy15251 378 TGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDT------NINFLINLCSNDH 438 (720)
Q Consensus 378 ~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~~t------n~~~l~~~~~~~~ 438 (720)
...+.|... --+|++++.|+|.++|++++.+.++. ...|+.. +.+-|...|.||.
T Consensus 369 ~~~~~g~~m-----rk~G~v~~~g~~~e~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (1066)
T PRK05294 369 ADRRLGTQM-----KSVGEVMAIGRTFEESLQKALRSLEI-GVTGLDEDLFEEESLEELREELKEPT 429 (1066)
T ss_pred CCCCcccee-----cccceEEEEcCCHHHHHHHHHHhcCC-CCCCCCccccccCCHHHHHhhcCCCC
Confidence 122344111 11399999999999999999999954 4455332 1344555555553
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=1.1e-38 Score=347.14 Aligned_cols=349 Identities=18% Similarity=0.258 Sum_probs=274.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
+|+|+|+|..+..++++++++|+++++++.+++ ++...+||+.+.. +|.|.+.|.+++++ +|.|.+.++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~--~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e 69 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN--SPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE 69 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC--CChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence 489999999999999999999999999955444 4556789998742 67899999999986 466765554
Q ss_pred CCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCC
Q psy15251 90 FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG 169 (720)
Q Consensus 90 ~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~ 169 (720)
.+. ......+++.|++ ++|++++++.++||..+|++|+++|||+|++.. +.+.+++.++++++|||+|+||..|+
T Consensus 70 ~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~--~~~~~~~~~~~~~~g~P~vvKp~~~g 144 (352)
T TIGR01161 70 HVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLV--IKDEEELDAALQELGFPVVLKARTGG 144 (352)
T ss_pred cCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccE--eCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 433 3456777888876 469999999999999999999999999999988 88999999999999999999999987
Q ss_pred -CCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEEc
Q psy15251 170 -GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA 248 (720)
Q Consensus 170 -Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~ 248 (720)
||+|+++|++.+|+.++++.+ .+.++|+||||++++|+++.++.+.+|++..+ ......++.........
T Consensus 145 ~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~-~~~~~~~~~g~~~~~~~ 215 (352)
T TIGR01161 145 YDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFY-PVVENIHQDGILRYVVA 215 (352)
T ss_pred CCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEE-CCcccEEeCCEEEEEEC
Confidence 899999999999999888764 24689999999988999999998877886553 22222333333334567
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCCCC
Q psy15251 249 PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQEL 328 (720)
Q Consensus 249 Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~~l 328 (720)
|+ .++++..+++.+++.+++++|||+|++++||+++ ++|++||+|+|||++++..++...+++|.++.+++.++|.++
T Consensus 216 p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~-~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l 293 (352)
T TIGR01161 216 PA-AVPDAIQARAEEIARRLMEELGYVGVLAVEMFVL-PDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPL 293 (352)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEe-CCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCC
Confidence 87 6888999999999999999999999999999999 778899999999999887778888999999999999999998
Q ss_pred CCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEe--ecccCCCeeCCCCCCceEEEEEEcCC
Q psy15251 329 PLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIE--TGVIEGDEVSVHYDPMISKLVVWDEN 403 (720)
Q Consensus 329 ~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d--~~v~~G~~v~~~~d~~~a~vi~~g~~ 403 (720)
+.. .....+++..+...+ . .. ..........|.+ .++++ ...++|.++ |+|-+.|.|
T Consensus 294 ~~~----~~~~~~~m~n~~~~~-~-~~--~~~~~~~~~~~~~--~~~~y~k~~~~~~rk~--------Ghi~~~~~~ 352 (352)
T TIGR01161 294 GST----ELLLPSVMVNLLGTE-D-DV--IPLWEEILALPGA--KLHWYGKAEVRPGRKV--------GHVNLVGSD 352 (352)
T ss_pred CCc----cccCCEEEEEEecCc-c-ch--HHHHHHHHhCCCC--EEEECCCCCCCCCCcc--------eEEEeecCC
Confidence 743 344557777777653 0 00 0111111223432 34443 124455555 999988764
No 29
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.3e-38 Score=387.40 Aligned_cols=395 Identities=20% Similarity=0.257 Sum_probs=304.6
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHH
Q psy15251 7 VLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 7 ~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
.+|||||+|+|.+ +..++++++++|++++++++++........++|..|..+ .+.+.+.++
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep--------~~~e~l~~i 77 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEP--------LTVEFVKRI 77 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECC--------CCHHHHHHH
Confidence 5899999999987 557999999999999999888766656667889887632 567899999
Q ss_pred HHHcCCCEEEeCCCCCc-ccHHH----HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHH
Q psy15251 76 AVRSQCQAIHPGYGFLS-ENAEF----ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEIL 150 (720)
Q Consensus 76 a~~~~~daI~pg~g~ls-E~~~~----a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~ 150 (720)
++++++|+|+|+.|... .+... ...+++.|++++|+++++++.+.||..+|++|+++|||+|++.. +++.+++
T Consensus 78 i~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~--v~s~ee~ 155 (1068)
T PRK12815 78 IAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEI--VTSVEEA 155 (1068)
T ss_pred HHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCcee--eCCHHHH
Confidence 99999999999876322 11111 22578889999999999999999999999999999999999988 8999999
Q ss_pred HHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEE
Q psy15251 151 MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYL 230 (720)
Q Consensus 151 ~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~ 230 (720)
.++++++|||+||||..|.||+|+.+|++.+||.++++.+.... ...+++||+||+|.+|+++.++.|.+|+++.+
T Consensus 156 ~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~ 231 (1068)
T PRK12815 156 LAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNCITV 231 (1068)
T ss_pred HHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999987765431 13589999999988899999999998888776
Q ss_pred Eeeeccccccc------eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCccc
Q psy15251 231 YERDCSVQRRH------QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEH 304 (720)
Q Consensus 231 ~~r~~s~~r~~------~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~ 304 (720)
. ..++.+ ...+..+|+..++++..+++.+.+.+++++||++|.+++||++++++|++|++|||||++++.
T Consensus 232 ~----~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~ 307 (1068)
T PRK12815 232 C----NMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSS 307 (1068)
T ss_pred E----eceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccch
Confidence 3 333221 224445787678999999999999999999999999999999994457899999999999998
Q ss_pred ccccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCC
Q psy15251 305 PVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGD 384 (720)
Q Consensus 305 ~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~ 384 (720)
.++..+||+++.+..+++++|.+|+-...++ .|.... .|.|....+ .++.|.+.-...-....+.|.
T Consensus 308 ~l~~~atG~pl~~~~~~~alG~~l~ei~~~i--~g~~~a----------~~ep~~d~~-~~k~p~~~f~~y~~~~~~~g~ 374 (1068)
T PRK12815 308 ALASKATGYPIAKIAAKLAVGYTLNELKNPV--TGLTYA----------SFEPALDYV-VVKFPRWPFDKFGYADRTLGT 374 (1068)
T ss_pred hhhhHhhCCcHHHHHHHHHcCCChHHhcCCc--cCCccc----------ccCCccceE-EEEeccCccccccCccccccc
Confidence 8988899999999999999999876322222 222110 244554443 234454311100001112222
Q ss_pred eeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecccc-------CHHHHHHhccCcc
Q psy15251 385 EVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDT-------NINFLINLCSNDH 438 (720)
Q Consensus 385 ~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~~t-------n~~~l~~~~~~~~ 438 (720)
.+ -..|++++.|+|.++|++++.++++. ...|+.. +-+-|.+.|.||.
T Consensus 375 km-----ks~G~v~~ig~~~eea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (1068)
T PRK12815 375 QM-----KATGEVMAIGRNFESAFQKALRSLEI-KRNGLSLPIELSGKSDEELLQDLRHPD 429 (1068)
T ss_pred ee-----cccceEEEecCCHHHHHHHHHHhhcC-CCCCCCCccccccCCHHHHHHHhccCC
Confidence 22 01399999999999999999999954 4445431 2344555555553
No 30
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=353.80 Aligned_cols=381 Identities=15% Similarity=0.155 Sum_probs=280.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCC---cccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADA---LHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~---~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
|||+|||++++..+..++++++++|+++++++++.+... .....++....+ .+.+.+.+++++++.++|+
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~l~~~~~~~~~d~ 73 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVI-------INGDIDDLVEFLRKLGPEA 73 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhh-------cCCCHHHHHHHHHHcCCCE
Confidence 688999999999999999999999999999987765432 122233333222 2367889999999999999
Q ss_pred EEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCC---c
Q psy15251 84 IHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGY---P 160 (720)
Q Consensus 84 I~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~---P 160 (720)
|+|+.+... ...+.+++..|+++ |++++++..++||..||++|+++|||+|+++. +.+.+++.++++++|| |
T Consensus 74 vi~~~e~~~--~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~--~~~~~e~~~~~~~~g~~~~P 148 (416)
T PRK07206 74 IIAGAESGV--ELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQIN--TADWEEAEAWLRENGLIDRP 148 (416)
T ss_pred EEECCCccH--HHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccEEe--cCCHHHHHHHHHhcCCCCCC
Confidence 999876432 33455666777763 78999999999999999999999999999987 8899999999999998 9
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcC--CCCcEEEeccccCCceEEEEEEEcccccEEEE--Eeeecc
Q psy15251 161 LMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF--NDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYL--YERDCS 236 (720)
Q Consensus 161 vvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f--~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~--~~r~~s 236 (720)
+||||..|+||+|+++|++.+|+.++++++.... +.+ .+..+++|+||+| .|++++++.. +|+++.. ..+...
T Consensus 149 ~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~ 225 (416)
T PRK07206 149 VVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLVTEIVRYHKT 225 (416)
T ss_pred EEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEEEEeEEeeec
Confidence 9999999999999999999999999998876421 111 1368999999995 8999999874 3565432 211111
Q ss_pred ccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC-cceeEEEEEEeCCCCcEEEEEecCCCCcc--cccccccccC
Q psy15251 237 VQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRY-HNAGTVEFIMDPSSGEFYFMEMNTRLQVE--HPVSEMITGV 313 (720)
Q Consensus 237 ~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~-~G~~~vEf~~~~~~g~~~~iEiNpR~~~~--~~~~e~~tGv 313 (720)
.......+.........+....+++.+.+.++++++|+ .|++|+||+++ ++| +++||||||+++. ..+++.++|+
T Consensus 226 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~-~~g-~~liEin~R~~G~~~~~~~~~~~G~ 303 (416)
T PRK07206 226 SLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLT-ADG-PRLIEIGARLDGGLHPDVARLATGD 303 (416)
T ss_pred ccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEc-CCC-CEEEEECCccCCCCccchhhhhcCc
Confidence 11111111111111113567889999999999999999 69999999999 666 8999999999865 3578899999
Q ss_pred cHHHHHHHHHcCCCCCCCC--CCCCcCeeEEEEEEeecCCCCCCCCCCcceeeee-------CCCCCCcEEEeecccCCC
Q psy15251 314 DLVQWQLMVASGQELPLKQ--EDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLR-------PPEHSDTIRIETGVIEGD 384 (720)
Q Consensus 314 dl~~~~l~~a~G~~l~~~~--~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~-------~p~~~~~vr~d~~v~~G~ 384 (720)
|+.+++++.++|.+..... ......+++....+.+ |..|.+..+. .|.. ..+...+++|+
T Consensus 304 d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v---~~~~~~~~~G~ 372 (416)
T PRK07206 304 SQLDATVESLADPDVFRETLREGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQKLPSF---KKSHIYVKEGD 372 (416)
T ss_pred CHHHHHHHHHhCchhhccccCCCcChhhceEEEEEec--------CCCceEeCCccHHHHHhCCch---hheEEecCCCC
Confidence 9999999999998653221 1122334443222222 2335544432 2331 34555678999
Q ss_pred eeCCCCC--CceEEEEEEcCCHHHHHHHHHHHh
Q psy15251 385 EVSVHYD--PMISKLVVWDENRTLALNKMKQAL 415 (720)
Q Consensus 385 ~v~~~~d--~~~a~vi~~g~~~~ea~~~~~~al 415 (720)
.|.+..| +.+|++++.|+|.+++.+..++.-
T Consensus 373 ~v~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 373 YVPQTVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred CccCceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 9977655 568999999999999776655443
No 31
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.6e-37 Score=369.42 Aligned_cols=381 Identities=15% Similarity=0.175 Sum_probs=296.6
Q ss_pred CCEEEEEcCcH--HHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHc-CCCEE
Q psy15251 8 LDSILIANRGE--IACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRS-QCQAI 84 (720)
Q Consensus 8 ~~~iLI~~~G~--~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~-~~daI 84 (720)
.++|++++.+. ++..++++++++||+++.+.+++..+......+|..+.. ++.|.+.+++++++. .+++|
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~V 74 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA-------DTSDPDRIHRFVSSLDGVAGI 74 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc-------CCCCHHHHHHHHHhcCCCCEE
Confidence 35888888654 567789999999999999976655433323245655543 668899999999987 58999
Q ss_pred EeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEe
Q psy15251 85 HPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIK 164 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvK 164 (720)
+++.+... ...+.+++..|++ |++++++..++||..||++|+++|||+|++.. +++.+++.+++++++||+|||
T Consensus 75 ~~~se~~v--~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~--v~~~~e~~~~~~~~~~PvVVK 148 (887)
T PRK02186 75 MSSSEYFI--EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHA--LALRAVALDALDGLTYPVVVK 148 (887)
T ss_pred EeCchhhH--HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE--eCCHHHHHHHHHhCCCCEEEE
Confidence 98876433 4567788889988 89999999999999999999999999999987 889999999999999999999
Q ss_pred ecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEE-EEeeecccccccee
Q psy15251 165 AVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY-LYERDCSVQRRHQK 243 (720)
Q Consensus 165 p~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~-~~~r~~s~~r~~~k 243 (720)
|..|+||+||++|++.+|+.++++.+... +..++++||||+| +||++.++.+..+..+. +..+.......+..
T Consensus 149 P~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve 222 (887)
T PRK02186 149 PRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVARGHQVLGITRKHLGPPPHFVE 222 (887)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECCcEEEEEEEeeecCCCCCeEE
Confidence 99999999999999999999999877532 3578999999995 89999999876433332 22221111111222
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC-cceeEEEEEEeCCCCcEEEEEecCCCCccc--ccccccccCcHHHHHH
Q psy15251 244 IIEEAPAPGISSEFRSRLGSTGVQVARAVRY-HNAGTVEFIMDPSSGEFYFMEMNTRLQVEH--PVSEMITGVDLVQWQL 320 (720)
Q Consensus 244 ~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~-~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~--~~~e~~tGvdl~~~~l 320 (720)
.....|+ .++++..+++.+.+.++++++|+ .|++|+||+++ ++ .+||||||||+++.. .+++.++|+|++++++
T Consensus 223 ~g~~~P~-~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t-~~-g~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 223 IGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR-GD-TVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred eccccCC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEE-CC-CEEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 2334677 58889999999999999999999 69999999999 54 499999999998763 4788899999999999
Q ss_pred HHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCC----CCCcEEEeecccCCCeeCCC--CCCce
Q psy15251 321 MVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPE----HSDTIRIETGVIEGDEVSVH--YDPMI 394 (720)
Q Consensus 321 ~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~----~~~~vr~d~~v~~G~~v~~~--~d~~~ 394 (720)
+.++|.++.... ...+++...-+++ |..|.|..+..+. ..+++++...+.+|+.+++. +.+.+
T Consensus 300 ~~~lG~~~~~~~---~~~~~~ai~~~~~--------~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ 368 (887)
T PRK02186 300 DLHLGVAAFADP---TAKRYGAIRFVLP--------ARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRI 368 (887)
T ss_pred HHhCCCCCCCCC---CCCCeEEEEEEec--------CCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCcc
Confidence 999999876432 2344432211222 2346665554321 12456666778899999654 44689
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcceEe
Q psy15251 395 SKLVVWDENRTLALNKMKQALSQYQIA 421 (720)
Q Consensus 395 a~vi~~g~~~~ea~~~~~~al~~~~i~ 421 (720)
|+++++|+|++++.+++.++++.+++.
T Consensus 369 g~vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 369 AAVVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 999999999999999999999999875
No 32
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=6e-37 Score=341.26 Aligned_cols=385 Identities=16% Similarity=0.167 Sum_probs=271.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHc-CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANRGEIACRIMRTAKKM-GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~-G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||+|.|.....+++++++. |+.++.+. +..+. ....++ .+. .++.|.+.|+++|++.++|+|+++.
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~~--~~n~g-~~~~~~-~~~-------~~~~d~~~l~~~~~~~~id~vi~~~ 70 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYVA--PGNAG-TALLAE-NVV-------IDVTDIEALVAFAKEEGIDLTVVGP 70 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEe--CCCHH-HHhhcc-ccC-------CCCCCHHHHHHHHHHhCCCEEEECC
Confidence 899999999999999999886 55665652 22121 222233 222 2568999999999999999999876
Q ss_pred CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCC
Q psy15251 89 GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRG 168 (720)
Q Consensus 89 g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g 168 (720)
+... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++.. +.+.+++.++++++|||+|+||..|
T Consensus 71 e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~P~VvKP~~~ 147 (420)
T PRK00885 71 EAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYET--FTDAEEALAYLDEKGAPIVVKADGL 147 (420)
T ss_pred chHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEE--eCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 5311 235577889999999999999999999999999999999999999887 8899999999999999999999999
Q ss_pred CCCcceEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeccccCCceEEEEEEEcccccEEEEEe-eecc-c-----cc
Q psy15251 169 GGGKGMRIVRDSANFLAQLRSAQRESQSAFN--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYE-RDCS-V-----QR 239 (720)
Q Consensus 169 ~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~-r~~s-~-----~r 239 (720)
+||+|+++|++.+|+.++++.+.+.. .|+ +..+||||||+| +|+++.++.|++ ++..+.. ++.. . ..
T Consensus 148 ~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 223 (420)
T PRK00885 148 AAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPLPTAQDHKRAGDGDTGP 223 (420)
T ss_pred CCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEeceeeEeeeecccCCCCC
Confidence 99999999999999999999876532 222 358999999995 899999999753 4433321 1110 0 00
Q ss_pred cceeEEEEcCCCCCCHHHHHHHHH-HHHH---HHHHcC--CcceeEEEEEEeCCCCcEEEEEecCCCCcc-ccccccccc
Q psy15251 240 RHQKIIEEAPAPGISSEFRSRLGS-TGVQ---VARAVR--YHNAGTVEFIMDPSSGEFYFMEMNTRLQVE-HPVSEMITG 312 (720)
Q Consensus 240 ~~~k~~e~~Pa~~l~~~~~~~l~~-~a~~---i~~alg--~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~-~~~~e~~tG 312 (720)
........+|++.++++..+++.+ .+.+ .++++| |+|++|+||+++ ++| +|++|+|||+++. +......++
T Consensus 224 ~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t-~~g-~~viEin~R~g~~~~~~~~~~~~ 301 (420)
T PRK00885 224 NTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMIT-KDG-PKVIEFNARFGDPETQVVLPRLK 301 (420)
T ss_pred CCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEE-CCC-cEEEEEecccCCccHHhhhhhcc
Confidence 001122346776688877766654 4444 444555 579999999999 666 9999999999854 433334457
Q ss_pred CcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEE----EEeecCCCCCCCCCCcceeeeeCCCC----CCcEEE--eecccC
Q psy15251 313 VDLVQWQLMVASGQELPLKQEDLQLRGHSFET----RIYAENPYEGFLPGAGNLTHLRPPEH----SDTIRI--ETGVIE 382 (720)
Q Consensus 313 vdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~----ri~ae~p~~~f~p~~g~i~~~~~p~~----~~~vr~--d~~v~~ 382 (720)
.|+++.+++++.|...++.. . ..++.++.. +.|++++..+.. |..+..... .+++.. ...+..
T Consensus 302 ~d~~~~~~~~~~g~~~~~~~-~-~~~~~a~~~~~~~~gy~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (420)
T PRK00885 302 SDLVELLLAAADGKLDEVEL-E-WDDRAAVGVVLAAKGYPGDYRKGDV-----ITGLEAADADKVFHAGTKLEDGKLVTN 374 (420)
T ss_pred CCHHHHHHHHHcCCCCCCCc-e-ECCCcEEEEEEeCCCCCCCCCCCCE-----eecccccCCCEEEECceeccCCeEEEe
Confidence 79999999999997554321 1 123334322 234444432221 111100000 001111 011223
Q ss_pred CCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec--cccCHHH
Q psy15251 383 GDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG--LDTNINF 429 (720)
Q Consensus 383 G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G--~~tn~~~ 429 (720)
| ++++.+|+.|+|++||.++++++++.+++.| .++.|.+
T Consensus 375 g--------~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~~r~dig~ 415 (420)
T PRK00885 375 G--------GRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRDIGY 415 (420)
T ss_pred C--------CEEEEEEEecCCHHHHHHHHHHHHhccCCCCCEeechhhh
Confidence 3 4559999999999999999999999999998 3555554
No 33
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.5e-36 Score=335.86 Aligned_cols=385 Identities=16% Similarity=0.156 Sum_probs=273.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
+.||||+|+|.....++.++++.++.+.+.....+..... .+- ... ..-++.|.+.|+++|++.++|.|+++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~--~~~-~~~-----~~~~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD--DEL-LPA-----DSFSILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhc--ccc-ccc-----cCcCcCCHHHHHHHHHHcCCCEEEEC
Confidence 3599999999999999999999986544333333321111 110 000 01267899999999999999999987
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
.+... ...+++.++++|++++||+..++++++||..+|++|+++|||+|++.. +++.+++.+++++++||+||||..
T Consensus 76 ~E~~l-~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~--~~~~~ea~~~~~~~~~PvVVKp~~ 152 (426)
T PRK13789 76 PEDPL-VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKT--FTEYSSSLSYLESEMLPIVIKADG 152 (426)
T ss_pred CchHH-HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEe--eCCHHHHHHHHHhcCCCEEEEeCC
Confidence 74211 135678889999999999999999999999999999999999999876 889999999999999999999999
Q ss_pred CCCCcceEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeccccCCceEEEEEEEcccccEEEEE-eeecccccc----
Q psy15251 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFN--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLY-ERDCSVQRR---- 240 (720)
Q Consensus 168 g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~-~r~~s~~r~---- 240 (720)
++||+||+++++.+|+.++++.+.... .|+ +..++|||||+| +|+++.++.|+. +++.+. .+| ..+.
T Consensus 153 ~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~lp~~~d--~k~~~d~d 226 (426)
T PRK13789 153 LAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLPAAQD--HKRAFDGD 226 (426)
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEccceEe--cccccCCC
Confidence 999999999999999999999887542 343 348999999996 899999998753 333231 111 1111
Q ss_pred ----ceeEEEEcCCCCCCHHHHHHHHH-HHHHHH---HHcC--CcceeEEEEEEeCCCCcEEEEEecCCCCcc--ccccc
Q psy15251 241 ----HQKIIEEAPAPGISSEFRSRLGS-TGVQVA---RAVR--YHNAGTVEFIMDPSSGEFYFMEMNTRLQVE--HPVSE 308 (720)
Q Consensus 241 ----~~k~~e~~Pa~~l~~~~~~~l~~-~a~~i~---~alg--~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~--~~~~e 308 (720)
.......+|+|.++++..+++.+ .+.+++ ++.| |+|+.++||+++ ++|++|++|+|+|+|.. ..+..
T Consensus 227 ~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it-~~g~~~vlE~n~R~Gdpe~~~ll~ 305 (426)
T PRK13789 227 QGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMIS-PEGEPKVVEFNCRFGDPETQCVLA 305 (426)
T ss_pred CCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEc-CCCCEEEEEEecCCCCcHhhhhhc
Confidence 01234567887788888888765 444444 5556 799999999999 77889999999999832 23444
Q ss_pred ccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEE----eecCCCCCCCCCCcc-eeeeeCCCCCCcEEEee-cc--
Q psy15251 309 MITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRI----YAENPYEGFLPGAGN-LTHLRPPEHSDTIRIET-GV-- 380 (720)
Q Consensus 309 ~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri----~ae~p~~~f~p~~g~-i~~~~~p~~~~~vr~d~-~v-- 380 (720)
+. ..||++++++++.|+..... .....+.++..-+ |+..+ ..|. |. +.... .+++++.. ++
T Consensus 306 ~l-~~dl~~~~~~~~~g~l~~~~--~~~~~~~s~~vv~a~~gyp~~~------~~g~~i~-~~~~~-~~~~~if~a~~~~ 374 (426)
T PRK13789 306 ML-DGDLLELLYAASTGKIKVVN--LKLKQGAAAVVVLAAQGYPDSY------EKNIPLN-LPETS-GQNVVLFHAGTKK 374 (426)
T ss_pred cC-CCCHHHHHHHHHcCCCCCCC--ceecCCceEEEEECcCCcCCCc------CCCCEEe-ccCcC-CCCcEEEEeeeee
Confidence 44 57999999999999632211 1122334433222 33222 2232 32 22111 12333321 11
Q ss_pred cCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecc
Q psy15251 381 IEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGL 423 (720)
Q Consensus 381 ~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~ 423 (720)
..|..+ .+..++..+++.|.|.++|.++++++++.+++.|.
T Consensus 375 ~~~~~~--t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 415 (426)
T PRK13789 375 KDGKVF--SSGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKT 415 (426)
T ss_pred eCCEEE--eCCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 112111 23345588999999999999999999999999983
No 34
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=4.5e-37 Score=373.88 Aligned_cols=304 Identities=19% Similarity=0.286 Sum_probs=260.9
Q ss_pred CCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHH
Q psy15251 8 LDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIA 76 (720)
Q Consensus 8 ~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a 76 (720)
.+||||+|+|.+ ++.++++++++|+++++++++++..+.....+|..|..+ .+.+.+++++
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep--------~~~e~vl~i~ 625 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEP--------LTFEDVMNII 625 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEec--------CCHHHHHHHH
Confidence 479999999976 678999999999999999998888777778899887632 5689999999
Q ss_pred HHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHH
Q psy15251 77 VRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAER 156 (720)
Q Consensus 77 ~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ 156 (720)
+++++|+|+|++|... ...++..+++.|++++|+++++++.+.||..++++|+++|||+|++.. +.+.+++.+++++
T Consensus 626 ~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~--v~s~ee~~~~~~~ 702 (1050)
T TIGR01369 626 ELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKT--ATSVEEAVEFASE 702 (1050)
T ss_pred hhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEE--ECCHHHHHHHHHh
Confidence 9999999999987432 235688899999999999999999999999999999999999999987 8999999999999
Q ss_pred hCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEE--eee
Q psy15251 157 IGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLY--ERD 234 (720)
Q Consensus 157 ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~--~r~ 234 (720)
+|||+||||+++.||+||.+|++.+|+.++++++... ..+.+++||+||++++|+++++++|+ |+++... +.-
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~----s~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~ 777 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEV----SPEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHI 777 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHh----CCCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEee
Confidence 9999999999999999999999999999999987643 23578999999998899999999986 4554432 211
Q ss_pred ccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCc
Q psy15251 235 CSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVD 314 (720)
Q Consensus 235 ~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvd 314 (720)
..............|+..++++..+++.+++.+++++||+.|++|+||+++ +|++|+||+|||++++.++++.++|+|
T Consensus 778 ~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~--~~~~yvIEvNpR~s~t~p~vs~atGi~ 855 (1050)
T TIGR01369 778 EEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK--DGEVYVIEVNPRASRTVPFVSKATGVP 855 (1050)
T ss_pred cccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE--CCeEEEEEEeCCCCchHHHHHHHHCCC
Confidence 100001112334457667899999999999999999999999999999999 467999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCC
Q psy15251 315 LVQWQLMVASGQELP 329 (720)
Q Consensus 315 l~~~~l~~a~G~~l~ 329 (720)
++++++++++|.+++
T Consensus 856 l~~~~~~~~lG~~l~ 870 (1050)
T TIGR01369 856 LIKLATRVMLGKKLE 870 (1050)
T ss_pred HHHHHHHHHcCCCcc
Confidence 999999999999876
No 35
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=5.3e-36 Score=334.29 Aligned_cols=389 Identities=14% Similarity=0.176 Sum_probs=270.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
||||+|+|..+..++++++++|+.+.++.+ +..+.......+..+. .++.|.+.|+++|+++++|+|+|+.+
T Consensus 2 kiliiG~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~d~~~l~~~~~~~~id~vi~~~e 73 (423)
T TIGR00877 2 KVLVIGNGGREHALAWKLAQSPLVKYVYVA-PGNAGTARLAKNKNVA-------ISITDIEALVEFAKKKKIDLAVIGPE 73 (423)
T ss_pred EEEEECCChHHHHHHHHHHhCCCccEEEEE-CCCHHHhhhccccccc-------CCCCCHHHHHHHHHHhCCCEEEECCc
Confidence 899999999999999999999976544433 3222211111122222 26689999999999999999999875
Q ss_pred CCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCc-EEEeecCC
Q psy15251 90 FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP-LMIKAVRG 168 (720)
Q Consensus 90 ~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~P-vvvKp~~g 168 (720)
... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++.. +.+.+++.++++++||| +|+||..|
T Consensus 74 ~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~--~~~~~~~~~~~~~~g~P~~VvKp~~~ 150 (423)
T TIGR00877 74 APL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV--FTDPEEALSYIQEKGAPAIVVKADGL 150 (423)
T ss_pred hHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEE--ECCHHHHHHHHHhcCCCeEEEEECCC
Confidence 211 135678899999999999999999999999999999999999999887 88999999999999999 99999999
Q ss_pred CCCcceEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeccccCCceEEEEEEEcccccEEEEE-eeecccccc-----
Q psy15251 169 GGGKGMRIVRDSANFLAQLRSAQRESQSAFN--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLY-ERDCSVQRR----- 240 (720)
Q Consensus 169 ~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~-~r~~s~~r~----- 240 (720)
+||+|++++++.+|+.++++.+.... |+ ...+++|+||+| .|+++.++.|+. ++..+. .++ ..+.
T Consensus 151 ~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~--~~~~~~~~~ 223 (423)
T TIGR00877 151 AAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPMPPAQD--HKRALEGDK 223 (423)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEEEcCC-eEEeceeeee--eeecccCCC
Confidence 99999999999999999998876543 32 358999999996 899999998753 333332 111 0110
Q ss_pred ---ceeEEEEcCCCCCCHHHHHHH----HHHHHHHHHHcC--CcceeEEEEEEeCCCCcEEEEEecCCCCcc-cc-cccc
Q psy15251 241 ---HQKIIEEAPAPGISSEFRSRL----GSTGVQVARAVR--YHNAGTVEFIMDPSSGEFYFMEMNTRLQVE-HP-VSEM 309 (720)
Q Consensus 241 ---~~k~~e~~Pa~~l~~~~~~~l----~~~a~~i~~alg--~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~-~~-~~e~ 309 (720)
.......+|++.++++...++ .+.+.+.+.++| |+|++|+||+++ ++| +|++|+|||+++. +. +..
T Consensus 224 ~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t-~~g-~~viEin~R~g~~~~~~~~~- 300 (423)
T TIGR00877 224 GPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLT-KEG-PKVLEFNCRFGDPETQAVLP- 300 (423)
T ss_pred CCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEE-CCC-cEEEEEEccCCCccceeEec-
Confidence 011123466656776655443 333445555554 689999999999 667 9999999999865 32 333
Q ss_pred cccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecC-CCCCCCCCCcceeeee-CCC-CCCcEEEee-cccCCCe
Q psy15251 310 ITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAEN-PYEGFLPGAGNLTHLR-PPE-HSDTIRIET-GVIEGDE 385 (720)
Q Consensus 310 ~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-p~~~f~p~~g~i~~~~-~p~-~~~~vr~d~-~v~~G~~ 385 (720)
.+++||.+.+++++.|...++.. . ..++.++...+.+.. |. . .+....+. .+. ..+++++.. ++ +..
T Consensus 301 ~~~~dl~~~~~~~~~g~l~~~~~-~-~~~~~a~~~~~~~~~yp~---~--~~~~~~i~~~~~~~~~~~~~~~~~~--~~~ 371 (423)
T TIGR00877 301 LLKSDLLEVCLAAVEGKLDEVEL-R-FDNRAAVTVVLASEGYPG---D--YRKGDPITGEPLIEAEGVKVFHAGT--KQD 371 (423)
T ss_pred ccCCCHHHHHHHHHcCCCCCCCc-e-ECCCceEEEEEecCCcCC---C--CCCCCEeeCCcccccCCCEEEECce--ecc
Confidence 35799999999999996222111 1 123344433333222 11 1 11111121 010 012333321 11 111
Q ss_pred e--CCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec--cccCHH
Q psy15251 386 V--SVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG--LDTNIN 428 (720)
Q Consensus 386 v--~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G--~~tn~~ 428 (720)
. .....+.++.+|+.|+|+++|.++++++++.+++.| .++.|.
T Consensus 372 ~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~~~r~dig 418 (423)
T TIGR00877 372 NGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFYRKDIG 418 (423)
T ss_pred CCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEecccc
Confidence 1 112345679999999999999999999999999998 344544
No 36
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=316.11 Aligned_cols=375 Identities=22% Similarity=0.282 Sum_probs=301.3
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
+|..++ ....+..+++++|+.|++|+++.+++........+||..|..| ...+.+..++++.++|+|+|+.
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ 78 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTL 78 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeec--------CcHHHHHHHHHhcCcceeeccc
Confidence 344444 4456888999999999999999999888888889999999876 6788999999999999999998
Q ss_pred CCCc-ccHHH----HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEE
Q psy15251 89 GFLS-ENAEF----ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMI 163 (720)
Q Consensus 89 g~ls-E~~~~----a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~Pvvv 163 (720)
|-.. .|... ...|++.|++++|.+.++++.+.||.+++++|++.|+|+| ... ..+.+++.+..+.+||||||
T Consensus 79 ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~--~~~~~e~~~~~~~ig~PvIV 155 (400)
T COG0458 79 GGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRI--AHSVEEADEIADEIGYPVIV 155 (400)
T ss_pred CCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccc--cccHHHHhhhHhhcCCCEEE
Confidence 7432 22222 2245677999999999999999999999999999999999 444 78899999999999999999
Q ss_pred eecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeee-c-cccccc
Q psy15251 164 KAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERD-C-SVQRRH 241 (720)
Q Consensus 164 Kp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~-~-s~~r~~ 241 (720)
||+.+.||.|..+++|.+||.+......+.+ +-..+++||+|.|..|++..+..|.+++++.+...+ + +...+.
T Consensus 156 rP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvht 231 (400)
T COG0458 156 KPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHT 231 (400)
T ss_pred ecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccc
Confidence 9999999999999999999999888766542 246999999999999999999999999998873221 1 122233
Q ss_pred eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHH
Q psy15251 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLM 321 (720)
Q Consensus 242 ~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~ 321 (720)
.+.+..+|++.+++...+.++..+.++++.+|..|.++++|.+++.+|++|+||||||++.+..+...+||..+.....+
T Consensus 232 gdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaak 311 (400)
T COG0458 232 GDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAK 311 (400)
T ss_pred cceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHHH
Confidence 56677899999999999999999999999999999999999999656799999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEc
Q psy15251 322 VASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWD 401 (720)
Q Consensus 322 ~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g 401 (720)
+|.|..++-.+.+++..+++ .|.|+...+. .+.|.+ +.-.+ ...-++....+.+ .|.+++.|
T Consensus 312 la~g~~l~Ei~n~it~~t~a------------~fePsldyvv-~k~pr~-~f~kf---~~~~~~l~~~mks-~gevm~ig 373 (400)
T COG0458 312 LAVGYTLDEIRNDITGRTPA------------SFEPSLDYVV-TKIPRF-DFEKF---PGADRRLGTQMKS-VGEVMAIG 373 (400)
T ss_pred hhcccCchhhcCcccccccc------------ccCCccceee-eecCCC-Ccccc---cccccceeeeeec-cceEEEec
Confidence 99998887555555554444 3777776543 223321 00010 0011122222222 38999999
Q ss_pred CCHHHHHHHHHHHhhc
Q psy15251 402 ENRTLALNKMKQALSQ 417 (720)
Q Consensus 402 ~~~~ea~~~~~~al~~ 417 (720)
++++||++|+.+.|+.
T Consensus 374 r~f~eal~ka~~~l~~ 389 (400)
T COG0458 374 RTFEEALQKALRSLEI 389 (400)
T ss_pred chHHHHHHHHHHhhcc
Confidence 9999999999999864
No 37
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=9.7e-36 Score=329.50 Aligned_cols=388 Identities=18% Similarity=0.180 Sum_probs=275.2
Q ss_pred EEEcCcHHHHHHHHHHHHcCC-cEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCC
Q psy15251 12 LIANRGEIACRIMRTAKKMGI-RVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGF 90 (720)
Q Consensus 12 LI~~~G~~a~~iira~~~~G~-~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~ 90 (720)
||+|+|.....++.++++... ..+.+ -+. +.. ....++.+.+|+ .++.|.+.|+++|++.++|.|++++++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~--~pg-n~g-~~~~~~~~~vp~----~~~~d~~~l~~~a~~~~id~vvvg~E~ 72 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFC--APG-NAG-IATSGDATCVPD----LDISDSAAVISFCRKWGVGLVVVGPEA 72 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEE--CCC-CHH-HhhhccceeecC----CCCCCHHHHHHHHHHcCCCEEEECCch
Confidence 789999999999999988762 22333 333 222 223444444421 366889999999999999999998764
Q ss_pred CcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCC
Q psy15251 91 LSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGG 170 (720)
Q Consensus 91 lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~G 170 (720)
.. .+.+++.++..|++++||+.+++++++||..+|++|+++|||+|++.. +.+.+++.+++++++||+||||..++|
T Consensus 73 ~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~--~~~~~e~~~~~~~~g~PvVVKp~~~~~ 149 (434)
T PLN02257 73 PL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYET--FTDPAAAKKYIKEQGAPIVVKADGLAA 149 (434)
T ss_pred HH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEE--eCCHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 21 147788899999999999999999999999999999999999999887 889999999999999999999999999
Q ss_pred CcceEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccce------
Q psy15251 171 GKGMRIVRDSANFLAQLRSAQRESQSAFN--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQ------ 242 (720)
Q Consensus 171 g~Gv~~v~~~~el~~~~~~~~~~~~~~f~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~------ 242 (720)
|+||+++++.+|+.++++.+... ..|+ +..++||+||+| +|++++++.|+. +++.+.. .+. |+
T Consensus 150 GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~----~~d-hkr~~d~d 220 (434)
T PLN02257 150 GKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLES----AQD-HKRVGDGD 220 (434)
T ss_pred CCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEe----eee-cccccCCC
Confidence 99999999999999999887532 3344 368999999996 699999998853 4554432 221 21
Q ss_pred ------eEEEEcCCCCCCHHHHHHHHHH-HH---HHHHHcC--CcceeEEEEEEeCCCCcEEEEEecCCCCc-ccccccc
Q psy15251 243 ------KIIEEAPAPGISSEFRSRLGST-GV---QVARAVR--YHNAGTVEFIMDPSSGEFYFMEMNTRLQV-EHPVSEM 309 (720)
Q Consensus 243 ------k~~e~~Pa~~l~~~~~~~l~~~-a~---~i~~alg--~~G~~~vEf~~~~~~g~~~~iEiNpR~~~-~~~~~e~ 309 (720)
.....+|+|.+++++.+++.+. +. +.+++.| |+|...+||+++.++|++||||+|+|+|. ++.++..
T Consensus 221 ~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~ 300 (434)
T PLN02257 221 TGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMM 300 (434)
T ss_pred CCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEeh
Confidence 2334578877998888875443 33 4444544 57999999999833567999999999994 4656655
Q ss_pred cccCcHHHHHHHHHcCCCCCCCCCCCCc-CeeEEEE----EEeecCCCCCCCCCCcceeeeeCCCC-CCcEEEee-ccc-
Q psy15251 310 ITGVDLVQWQLMVASGQELPLKQEDLQL-RGHSFET----RIYAENPYEGFLPGAGNLTHLRPPEH-SDTIRIET-GVI- 381 (720)
Q Consensus 310 ~tGvdl~~~~l~~a~G~~l~~~~~~~~~-~g~ai~~----ri~ae~p~~~f~p~~g~i~~~~~p~~-~~~vr~d~-~v~- 381 (720)
.++.||++++++++.|+..... +.. .+.++.+ .-|+..+..++ .|.-+..... .+++.+.. ++.
T Consensus 301 ~l~~Dl~~~~~~~~~g~l~~~~---~~~~~~~av~vv~a~~gYp~~~~~g~-----~i~~~~~~~~~~~~~~v~~a~~~~ 372 (434)
T PLN02257 301 RLESDLAQVLLAACKGELSGVS---LTWSPDSAMVVVMASNGYPGSYKKGT-----VIKNLDEAEAVAPGVKVFHAGTAL 372 (434)
T ss_pred hhcCCHHHHHHHHHcCCCCCCC---ceECCCceEEEEEcCCCCCCCCCCCC-----EeeCCccccccCCCCEEEECCceE
Confidence 6899999999999999733221 222 2333322 22343333322 1211111000 02222211 111
Q ss_pred --CCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecc--ccCHHH
Q psy15251 382 --EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGL--DTNINF 429 (720)
Q Consensus 382 --~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~--~tn~~~ 429 (720)
.|..+ ....++..+++.|.|.++|.++++++++.+++.|. ++.|..
T Consensus 373 ~~~~~~~--t~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~DIg~ 422 (434)
T PLN02257 373 DSDGNVV--AAGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDIGW 422 (434)
T ss_pred ccCCEEE--ECCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhH
Confidence 11111 12244499999999999999999999999999983 555544
No 38
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=6.6e-36 Score=363.80 Aligned_cols=361 Identities=21% Similarity=0.333 Sum_probs=283.4
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHH
Q psy15251 7 VLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 7 ~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
..+||||+|+|++ ++.++++|+++|+++++++++++..+.....+|..|..+ .+.+.|+++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep--------~~~e~vl~I 625 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEP--------LTLEDVLNV 625 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEcc--------CCHHHHHHH
Confidence 4689999999975 557799999999999999999988888888899988643 568999999
Q ss_pred HHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHH
Q psy15251 76 AVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAE 155 (720)
Q Consensus 76 a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~ 155 (720)
++++++|+|+|++|... ...++..+++.|++++|+++++++.+.||..++++|+++|||+|++.. +.+.+++.++++
T Consensus 626 ~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~--~~s~ee~~~~~~ 702 (1068)
T PRK12815 626 AEAENIKGVIVQFGGQT-AINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLT--ATDEEEAFAFAK 702 (1068)
T ss_pred HhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEE--eCCHHHHHHHHH
Confidence 99999999999876421 235678889999999999999999999999999999999999999988 899999999999
Q ss_pred HhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeec
Q psy15251 156 RIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDC 235 (720)
Q Consensus 156 ~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~ 235 (720)
++|||+|+||+++.||+||++|++.+|+.++++.+. ..+.++++|+||+| .|++++++.|++ .++.....+
T Consensus 703 ~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v~i~~i~e- 773 (1068)
T PRK12815 703 RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDG-KEYEVDAISDGE-DVTIPGIIE- 773 (1068)
T ss_pred hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecC-ceEEEEEEEcCC-ceEEeeEEE-
Confidence 999999999999999999999999999999998762 13678999999985 799999999864 332221111
Q ss_pred ccccc--c-eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCccccccccccc
Q psy15251 236 SVQRR--H-QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITG 312 (720)
Q Consensus 236 s~~r~--~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tG 312 (720)
...+. | .......|...++++..+++.+.+.+++++||+.|++++||+++ ++++|+||+|||+++..+++..++|
T Consensus 774 ~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~--~~~~yviEiNpR~s~t~~~~skatG 851 (1068)
T PRK12815 774 HIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLA--NDEIYVLEVNPRASRTVPFVSKATG 851 (1068)
T ss_pred EeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEE--CCcEEEEEEeCCCCccHHHHHHHHC
Confidence 01111 1 11233345557899999999999999999999999999999999 4679999999999999998889999
Q ss_pred CcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEE---eecccCCCeeCCC
Q psy15251 313 VDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRI---ETGVIEGDEVSVH 389 (720)
Q Consensus 313 vdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~---d~~v~~G~~v~~~ 389 (720)
+|++++.+++++|++++... .. .++.|..+.+. ++.|.. +.-++ |....+-..
T Consensus 852 v~l~~~~~~~~lG~~l~~~~----~~--------------~~~~~~~~~~~-vk~p~f-~f~~~~~~~~~lg~~m~---- 907 (1068)
T PRK12815 852 VPLAKLATKVLLGKSLAELG----YP--------------NGLWPGSPFIH-VKMPVF-SYLKYPGVDNTLGPEMK---- 907 (1068)
T ss_pred CCHHHHHHHHHcCCChhhcc----cc--------------cccCCCCCeEE-EEeccC-ChhHcccCCCccCCcce----
Confidence 99999999999999876221 00 01223322221 233321 11121 111111111
Q ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhh
Q psy15251 390 YDPMISKLVVWDENRTLALNKMKQALS 416 (720)
Q Consensus 390 ~d~~~a~vi~~g~~~~ea~~~~~~al~ 416 (720)
..|.++..|+|.++|+.|+..+..
T Consensus 908 ---stGe~~~~~~~~~~a~~k~~~~~~ 931 (1068)
T PRK12815 908 ---STGEVMGIDKDLEEALYKGYEASD 931 (1068)
T ss_pred ---EcceeEeccCCHHHHHHHHHHhcC
Confidence 138899999999999999877653
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=7.7e-36 Score=364.53 Aligned_cols=306 Identities=21% Similarity=0.285 Sum_probs=257.7
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHH
Q psy15251 7 VLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 7 ~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
..|||||+|+|++ ++++++++|++|+++++++.++...+....++|+.|..+ .+.+.++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~--------~~~e~v~~i 624 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEP--------LTLEDVLEI 624 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecC--------CCHHHHHHH
Confidence 5689999999974 467899999999999999888887777778899877632 468999999
Q ss_pred HHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHH
Q psy15251 76 AVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAE 155 (720)
Q Consensus 76 a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~ 155 (720)
++++++|+|+|.+|.-.. ..++..+++.|++++|+++++++.+.||..++++|+++|||+|++.. +.+.+++.++++
T Consensus 625 ~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~--~~s~ee~~~~~~ 701 (1066)
T PRK05294 625 IEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGT--ATSVEEALEVAE 701 (1066)
T ss_pred HHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEE--ECCHHHHHHHHH
Confidence 999999999987763221 35678899999999999999999999999999999999999999988 889999999999
Q ss_pred HhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEE--Eee
Q psy15251 156 RIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYL--YER 233 (720)
Q Consensus 156 ~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~--~~r 233 (720)
++||||||||+++.||+||.+|++.+|+..+++.+... ..+.+++||+||+|.+|+++.+++|++ +++.. .++
T Consensus 702 ~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~----s~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e~ 776 (1066)
T PRK05294 702 EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIMEH 776 (1066)
T ss_pred hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh----CCCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEEe
Confidence 99999999999999999999999999999999887643 235789999999976699999999864 23222 111
Q ss_pred eccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccC
Q psy15251 234 DCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGV 313 (720)
Q Consensus 234 ~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGv 313 (720)
-.....+........|+..++++..+++.+++.+++++||+.|++++||+++ ++++|++|+|||+++..+++..++|+
T Consensus 777 i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~--~~~~yViEiNpR~s~t~~~~s~atGi 854 (1066)
T PRK05294 777 IEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK--DDEVYVIEVNPRASRTVPFVSKATGV 854 (1066)
T ss_pred eeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE--CCeEEEEEEecCCCccHHHHHHHhCc
Confidence 0000001112233446557899999999999999999999999999999999 46799999999999989999999999
Q ss_pred cHHHHHHHHHcCCCCCC
Q psy15251 314 DLVQWQLMVASGQELPL 330 (720)
Q Consensus 314 dl~~~~l~~a~G~~l~~ 330 (720)
|+++..+++++|++|+.
T Consensus 855 ~~~~~~~~~~lG~~l~~ 871 (1066)
T PRK05294 855 PLAKIAARVMLGKKLAE 871 (1066)
T ss_pred cHHHHHHHHHcCCChhh
Confidence 99999999999998863
No 40
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=2e-35 Score=327.77 Aligned_cols=384 Identities=16% Similarity=0.166 Sum_probs=266.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 9 DSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 9 ~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
+||||+|.|.....++.++++.|++++++..+.+ ......++..+.+ +..|.+.|+++|+++++|+|+|+.
T Consensus 3 ~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~N--pg~~~~a~~~~~~-------~~~d~e~l~~~~~~~~id~Vi~~~ 73 (435)
T PRK06395 3 MKVMLVGSGGREDAIARAIKRSGAILFSVIGHEN--PSIKKLSKKYLFY-------DEKDYDLIEDFALKNNVDIVFVGP 73 (435)
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCC--hhhhhcccceeec-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 3999999999999999999999988777743222 2223345543332 557899999999999999999987
Q ss_pred CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcc-cCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 89 GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY-HGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 89 g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~-~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
+... ...++..+++.|++++||+.+++++++||..||++|.++|||+|+.+ . +.+.+++..++.+++||+||||..
T Consensus 74 d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~--~~~~~e~~~~~~~~~~PvVVKP~~ 150 (435)
T PRK06395 74 DPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNA--CFSEKDAARDYITSMKDVAVKPIG 150 (435)
T ss_pred ChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccce--eCChHHHHHHHHhhCCCEEEEeCC
Confidence 6311 13456677888999999999999999999999999999999998665 4 556788888888889999999999
Q ss_pred CCCCcceEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 168 GGGGKGMRIVRDS-ANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 168 g~Gg~Gv~~v~~~-~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
++||+||++|.+. +++.+++..+.... . .+..++|||||+| .|++++++.|+. .++.+. ..+.|.+..+
T Consensus 151 ~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l~-----~~~d~~r~~~ 220 (435)
T PRK06395 151 LTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMP-----IVQDYKRAYE 220 (435)
T ss_pred CCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecCC-ceEEEEEEEcCC-eEEEec-----ccceeeeccc
Confidence 9999999999643 33445444443311 1 1468999999995 799999999753 333331 2222222111
Q ss_pred ------------Ec----CCCCCCHHHHHHHHHHHHHHHHHcC-----CcceeEEEEEEeCCCCcEEEEEecCCCCc-cc
Q psy15251 247 ------------EA----PAPGISSEFRSRLGSTGVQVARAVR-----YHNAGTVEFIMDPSSGEFYFMEMNTRLQV-EH 304 (720)
Q Consensus 247 ------------~~----Pa~~l~~~~~~~l~~~a~~i~~alg-----~~G~~~vEf~~~~~~g~~~~iEiNpR~~~-~~ 304 (720)
.+ |.|.++++..+++.+.+.+++++|+ |+|+.++||+++ ++| +|+||+|+|++. +.
T Consensus 221 ~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt-~~g-p~ViE~n~R~gdpe~ 298 (435)
T PRK06395 221 GDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDT-PNG-VKVIEINARFADPEG 298 (435)
T ss_pred CCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEe-CCC-cEEEEEeCCCCCccH
Confidence 11 4456899999999999999999999 678888999999 666 999999999983 23
Q ss_pred c-cccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEE-eecCCCCCCCCCCcceeeeeCCCC-CCcEEE-eecc
Q psy15251 305 P-VSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRI-YAENPYEGFLPGAGNLTHLRPPEH-SDTIRI-ETGV 380 (720)
Q Consensus 305 ~-~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri-~ae~p~~~f~p~~g~i~~~~~p~~-~~~vr~-d~~v 380 (720)
. +..+ ...||++..++++.| +|... .....+ .++ +++ .++.. ...|..|.|... |.. .+++.+ ..++
T Consensus 299 ~~il~~-l~~d~~~~~~~~~~g-~l~~~-~~~~~~-~~~-~~~l~~~gY--p~~~~~g~i~~~--~~~~~~~~~~~~~~~ 369 (435)
T PRK06395 299 INVLYL-LKSDFVETLHQIYSG-NLNGS-IKFERK-ATV-LKYIVPPGY--GENPSPGRIKID--KTIFDSNSDVYYASV 369 (435)
T ss_pred Hhhhhh-cccCHHHHHHHHhcC-CCCCC-ceecCC-CEE-EEEEecCCC--CCCCCCCceecc--ccccCCCCEEEEeec
Confidence 2 3333 389999999999999 44321 111122 222 232 22211 012333433211 110 122222 2211
Q ss_pred c--CCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecc--ccCHH
Q psy15251 381 I--EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGL--DTNIN 428 (720)
Q Consensus 381 ~--~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~--~tn~~ 428 (720)
. .+. ......+++.+++.|+|+++|.++++++++.++ .|. ++.|.
T Consensus 370 ~~~~~~--~~s~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig 418 (435)
T PRK06395 370 SGTLND--VKTSGSRSLAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIG 418 (435)
T ss_pred cccCCC--eEECCCcEEEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchh
Confidence 1 111 112334569999999999999999999999998 552 55554
No 41
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=7e-35 Score=319.13 Aligned_cols=340 Identities=18% Similarity=0.198 Sum_probs=249.9
Q ss_pred cccCHHHHHHHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCC
Q psy15251 65 TYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144 (720)
Q Consensus 65 ~~~~~~~i~~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~ 144 (720)
++.|.+.|+++|++.++|+|+++.+... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++.. +
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~--~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKE--V 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEE--E
Confidence 6688999999999999999999886421 235678899999999999999999999999999999999999999887 8
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccc
Q psy15251 145 QNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY 224 (720)
Q Consensus 145 ~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~ 224 (720)
.+.+++.++++++|||+||||..++||+||++|++.+|+.++++.+.... .++.++||+||+| +|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 89999999999999999999999999999999999999999998865211 1458999999996 899999999854
Q ss_pred ccEEEEEeeeccccccc-----------eeEEEEcCCCCCCHHHHHHH-HHHHHHHHHHc---CC--cceeEEEEEEeCC
Q psy15251 225 GNYVYLYERDCSVQRRH-----------QKIIEEAPAPGISSEFRSRL-GSTGVQVARAV---RY--HNAGTVEFIMDPS 287 (720)
Q Consensus 225 G~~v~~~~r~~s~~r~~-----------~k~~e~~Pa~~l~~~~~~~l-~~~a~~i~~al---g~--~G~~~vEf~~~~~ 287 (720)
. .+.+ +|..+.+. ......+|++.++++..+++ .+.+.+++++| |+ .|+.++||+++ +
T Consensus 164 ~-~~~~---~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt-~ 238 (379)
T PRK13790 164 L-AVPF---DCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILT-K 238 (379)
T ss_pred E-EEec---ccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe-C
Confidence 2 2221 11111110 11223457767887776555 55666666665 54 79999999999 6
Q ss_pred CCcEEEEEecCCCCcc-cccccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeee
Q psy15251 288 SGEFYFMEMNTRLQVE-HPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLR 366 (720)
Q Consensus 288 ~g~~~~iEiNpR~~~~-~~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~ 366 (720)
+| +|++|+|+|++.. ..++...+|+||++++++.+.|+++++...+-..-|..+.++.|+..+..+. .|..+.
T Consensus 239 ~g-~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~~~~~~~v~~~s~gyp~~~~~~~-----~i~~~~ 312 (379)
T PRK13790 239 DG-PKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGH-----KVSGFD 312 (379)
T ss_pred CC-eEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeEcCCCEEEEEEccCCCCCCCCCCC-----eeeecC
Confidence 66 9999999999743 3344445799999999999999877655433333444445556766654332 121111
Q ss_pred CCCCCCcEEEeeccc--CCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecc--ccCHHH
Q psy15251 367 PPEHSDTIRIETGVI--EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGL--DTNINF 429 (720)
Q Consensus 367 ~p~~~~~vr~d~~v~--~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~--~tn~~~ 429 (720)
. . ..+ ...++. .|..+ ....++..+++.|.|.+||.++++++++.+++.|. ++.|.+
T Consensus 313 ~-~--~~~-~~~~~~~~~~~~~--~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~dig~ 373 (379)
T PRK13790 313 L-N--ENY-FVSGLKKQGDTFV--TSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIAN 373 (379)
T ss_pred C-C--CeE-EECCccccCCeEE--ECCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhh
Confidence 0 0 011 111111 11111 11244599999999999999999999999999983 555544
No 42
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=5.9e-34 Score=318.10 Aligned_cols=379 Identities=16% Similarity=0.149 Sum_probs=261.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHc--CCcEEEEeeCCCCCCccc--ccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 10 SILIANRGEIACRIMRTAKKM--GIRVVSVYSDIDADALHV--KMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~--G~~~v~v~s~~d~~~~~~--~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
||||+|+|.....++.++++. |++++++..+.+...... .++|..+.+ +..|.+.|+++|++.++|+|+
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id~Vi 74 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPDLVV 74 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEec-------CCCCHHHHHHHHHHhCCCEEE
Confidence 899999999999999999998 999988854333221111 122444443 567899999999999999999
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCC-cccCCCCCHHHHHHHHHHhCCcEEEe
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP-GYHGEDQNEEILMEQAERIGYPLMIK 164 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~-~~~~~~~s~~e~~~~~~~ig~PvvvK 164 (720)
||.+.. -...+++.++++|++++||+++++++++||..||++|+++|||+|+ +.. +++.+++.++++.. +|+|||
T Consensus 75 ~g~E~~-l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~--~~~~~ea~~~~~~~-~PvVVK 150 (486)
T PRK05784 75 IGPEEP-LFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKV--FYDVEEAAKFIEYG-GSVAIK 150 (486)
T ss_pred ECCchH-HHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceE--eCCHHHHHHHHhhc-CCEEEe
Confidence 986421 0125678899999999999999999999999999999999999974 554 68899998888665 699999
Q ss_pred ecCCCCCcceEEeCCHHH-----HHHHHHHHHHHH---HhcCC--CCcEEEeccccCCceEEEEEEEcccccEEEEEeee
Q psy15251 165 AVRGGGGKGMRIVRDSAN-----FLAQLRSAQRES---QSAFN--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERD 234 (720)
Q Consensus 165 p~~g~Gg~Gv~~v~~~~e-----l~~~~~~~~~~~---~~~f~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~ 234 (720)
|..++||+||++|++.++ +.+++.++..+. ...|+ +..++|||||+| .|++|+++.|++ .++.+.
T Consensus 151 P~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~--- 225 (486)
T PRK05784 151 PARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLP--- 225 (486)
T ss_pred eCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEEEee---
Confidence 999999999999999873 445554333332 13344 368999999995 799999999753 333221
Q ss_pred ccccccceeEE------------EEcC----CCCCCHHHHHHHHHHHHHHHHHc----C--CcceeEEEEEEeCCCCcEE
Q psy15251 235 CSVQRRHQKII------------EEAP----APGISSEFRSRLGSTGVQVARAV----R--YHNAGTVEFIMDPSSGEFY 292 (720)
Q Consensus 235 ~s~~r~~~k~~------------e~~P----a~~l~~~~~~~l~~~a~~i~~al----g--~~G~~~vEf~~~~~~g~~~ 292 (720)
..+.|..+. ..+| .|.++++..+++.+.+.+.++++ | |+|+.|+||++++++| |+
T Consensus 226 --~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~ 302 (486)
T PRK05784 226 --LAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PT 302 (486)
T ss_pred --eeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cE
Confidence 111222222 1245 56677877777777777666554 3 3699999999972344 99
Q ss_pred EEEecCCCCcc--cccccccccCcHHHHHHHHHcCCCCCCCCCCCCcC-eeEE----EEEEeecCCCCCCCCCCcceeee
Q psy15251 293 FMEMNTRLQVE--HPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLR-GHSF----ETRIYAENPYEGFLPGAGNLTHL 365 (720)
Q Consensus 293 ~iEiNpR~~~~--~~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~-g~ai----~~ri~ae~p~~~f~p~~g~i~~~ 365 (720)
+||+|+|++.. ..+.... +.||+++.++++.|+.-... +..+ +.++ .+.-||.. ..|..|.....
T Consensus 303 vIE~n~R~Gdpe~~~llp~l-~~dl~~~~~~~~~g~l~~~~---~~~~~~~~~~vv~as~gYp~~----~~~~~g~~i~~ 374 (486)
T PRK05784 303 VIEYYSRFGDPEASNIIPRI-ESDFGELFELAATGKLSKAK---IKFNEEPSVVKAIAPLGYPLS----RDLASGRRIVV 374 (486)
T ss_pred EEEEecccCCchHHHHHHhc-cCCHHHHHHHHHcCCCCCCC---eeecCCceEEEEECCCCCCCc----ccCCCCCEEEC
Confidence 99999999943 3355554 55999999999999632211 2222 2233 22223322 01223322211
Q ss_pred eCC--C-CC-----CcEEEe--ecccCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcc-eEecc
Q psy15251 366 RPP--E-HS-----DTIRIE--TGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQY-QIAGL 423 (720)
Q Consensus 366 ~~p--~-~~-----~~vr~d--~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~-~i~G~ 423 (720)
... . .+ .++..+ ..+..|++| ..+++.|+|.++|.++++++++.+ .+.|.
T Consensus 375 ~~~~~~~~~~~v~~ag~~~~~~~~~t~ggRv--------l~v~~~~~~l~~A~~~ay~~~~~i~~~~~~ 435 (486)
T PRK05784 375 DLDKIKEEGCLVFFGSVELEGGQLITKGSRA--------LEIVAIGKDFEEAYEKLERCISYVSSDTKL 435 (486)
T ss_pred CccccccCCCEEEECCceeeCCEEEEcCCCe--------EEEEEEeCCHHHHHHHHHHHHhhccCCCCC
Confidence 100 0 00 011111 113445555 999999999999999999999999 78873
No 43
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-34 Score=284.16 Aligned_cols=382 Identities=18% Similarity=0.227 Sum_probs=296.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
.-+|+|++|+|+.+..++-.|+++|.+|++|+...+.++.++ |+..|.+ +-+|.++|..+.++.++|.|+|
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqV--Ahrs~Vi-------~MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVI-------DMLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhh--hhheeee-------eccCHHHHHHHHHhhCCCeeee
Confidence 356899999999999999999999999999987777777666 7777766 5699999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHH-HCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEee
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI-KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~-~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp 165 (720)
-.+..+ .+....+++.|+.++ |...+.+++.|+...|+++. ++|+|+.++.. +++.+++.++++++||||++||
T Consensus 82 EiEAI~--td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~f--a~s~~e~~~a~~~iGfPcvvKP 156 (394)
T COG0027 82 EIEAIA--TDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRF--ADSLEELRAAVEKIGFPCVVKP 156 (394)
T ss_pred hhhhhh--HHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccc--cccHHHHHHHHHHcCCCeeccc
Confidence 776443 555667899999866 99999999999999999875 79999999998 9999999999999999999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEE
Q psy15251 166 VRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~ 245 (720)
..+++|+|-.+|++.++++.+++.+...++. +.+.+++|+||+-..|+++-.+..-+|+..++-+. --.|.+....-
T Consensus 157 vMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PI-GHrq~dgdY~E 233 (394)
T COG0027 157 VMSSSGKGQSVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPI-GHRQEDGDYRE 233 (394)
T ss_pred ccccCCCCceeecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCc-ccccCCCChhc
Confidence 9999999999999999999999998865542 35799999999855555555554444443211000 01233333344
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcC
Q psy15251 246 EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASG 325 (720)
Q Consensus 246 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G 325 (720)
.+.|. .+++...++....|.++..+||-.|.+.||+++. .++.||-|+.||+..+.-+|-..-+++-++++++..+|
T Consensus 234 SWQP~-~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLG 310 (394)
T COG0027 234 SWQPQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILG 310 (394)
T ss_pred ccCcc-ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEEeecCCCCCCCceEEEEeccchHHHHHHHHHhC
Confidence 56787 7999999999999999999999999999999999 45699999999998776666666689999999999999
Q ss_pred CCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCC-CcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCH
Q psy15251 326 QELPLKQEDLQLRGHSFETRIYAENPYEGFLPG-AGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENR 404 (720)
Q Consensus 326 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~-~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~ 404 (720)
.|++.. ..-+.+...-|+++... ..|. .|.-..+..|. -.+|+. |.+. .+-.-.+|-.++++++-
T Consensus 311 LPi~~i----~~~~P~AS~vI~~~~~~--~~~~f~~l~~AL~~p~--t~vRlF-----GKP~-~~~~RRmGVALA~a~~V 376 (394)
T COG0027 311 LPIPEI----RQISPAASAVILAQETS--QAPTFDGLAEALGVPD--TQVRLF-----GKPE-ADGGRRLGVALATAESV 376 (394)
T ss_pred CCccce----eeecccccceeeccccc--cCCchhhHHHHhcCCC--ceEEEe-----cCCc-ccCCceeeEEEecCccH
Confidence 998732 22222222334443321 2222 23334455564 357773 2222 11123459999999999
Q ss_pred HHHHHHHHHHhhcceEec
Q psy15251 405 TLALNKMKQALSQYQIAG 422 (720)
Q Consensus 405 ~ea~~~~~~al~~~~i~G 422 (720)
++|+++++++.+.+.+.+
T Consensus 377 e~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 377 EEARERARKAASAIEVKG 394 (394)
T ss_pred HHHHHHHHHHHhheecCC
Confidence 999999999999887753
No 44
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=309.61 Aligned_cols=294 Identities=18% Similarity=0.225 Sum_probs=236.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcC--CcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMG--IRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G--~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
|.||||+|.|... .++++++++| +++++++.++ .++....+|+.+.++.. .+....+.++++++++++|+|+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~--~~~~~~~~d~~~~~p~~---~~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISE--LAPALYFADKFYVVPKV---TDPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCC--cchhhHhccCcEecCCC---CChhHHHHHHHHHHHhCCCEEE
Confidence 4599999988766 8999999995 9999986554 44456679988877532 2223568899999999999999
Q ss_pred eCCCCCcc-cHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHH--HHHHhCCcEE
Q psy15251 86 PGYGFLSE-NAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILME--QAERIGYPLM 162 (720)
Q Consensus 86 pg~g~lsE-~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~--~~~~ig~Pvv 162 (720)
|+.+...+ .+.....++..|+++++|++++++.+.||..++++|+++|||+|+++. +.+.+++.+ +.++++||+|
T Consensus 75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~~~P~v 152 (326)
T PRK12767 75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYL--PESLEDFKAALAKGELQFPLF 152 (326)
T ss_pred ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEc--ccCHHHHHhhhhcccCCCCEE
Confidence 98763211 123345677789999999999999999999999999999999999987 888888887 5577899999
Q ss_pred EeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccce
Q psy15251 163 IKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQ 242 (720)
Q Consensus 163 vKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~ 242 (720)
+||..|+||+|++++++.+|+.++++. ..++++|+||+ ++++++.++.+.+|+++.++.+.....+..
T Consensus 153 iKP~~g~~s~gv~~v~~~~el~~~~~~----------~~~~lvqeyi~-G~e~~v~~~~~~~G~~~~~~~~~~~~~~~g- 220 (326)
T PRK12767 153 VKPRDGSASIGVFKVNDKEELEFLLEY----------VPNLIIQEFIE-GQEYTVDVLCDLNGEVISIVPRKRIEVRAG- 220 (326)
T ss_pred EEeCCCCCccCeEEeCCHHHHHHHHHh----------CCCeEEEeccC-CceEEEEEEEcCCCCEEEEEEeeeeeecCC-
Confidence 999999999999999999999988764 24899999998 589999999987788887765433111111
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHH
Q psy15251 243 KIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 243 k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~ 322 (720)
....... . ..+++.+.+.++++++|++|.+++||+++ + |++|+||+|||+++..++. ..+|+|+++++++.
T Consensus 221 ~~~~~~~---~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~-~-g~~~viEiNpR~~g~~~~~-~~~G~n~~~~~~~~ 291 (326)
T PRK12767 221 ETSKGVT---V---KDPELFKLAERLAEALGARGPLNIQCFVT-D-GEPYLFEINPRFGGGYPLS-YMAGANEPDWIIRN 291 (326)
T ss_pred ceeEEEE---c---CCHHHHHHHHHHHHhcCCeeeEEEEEEEE-C-CeEEEEEEeCCCCCcchhh-HhhCCCHHHHHHHH
Confidence 1111000 1 12678999999999999999999999999 4 7799999999999887765 45699999999999
Q ss_pred HcCCCCCC
Q psy15251 323 ASGQELPL 330 (720)
Q Consensus 323 a~G~~l~~ 330 (720)
++|++++.
T Consensus 292 ~~g~~~~~ 299 (326)
T PRK12767 292 LLGGENEP 299 (326)
T ss_pred HcCCCCCc
Confidence 99998763
No 45
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-32 Score=279.46 Aligned_cols=362 Identities=21% Similarity=0.275 Sum_probs=283.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
+++|-|+|+|..++.++.+++++|++++++++ +.+++..+.+|..+.. .|.|.+.+.+++.+ +|+|-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp--~~~~PA~~va~~~i~~-------~~dD~~al~ela~~--~DViT-- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDP--DADAPAAQVADRVIVA-------AYDDPEALRELAAK--CDVIT-- 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecC--CCCCchhhcccceeec-------CCCCHHHHHHHHhh--CCEEE--
Confidence 46899999999999999999999999999954 4555557779988763 67899999999976 45564
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
|+|-.=+.+....+... .+ +-|++++++...||...|++++++|+|+||+.. +.+.+++.++++++|+|+|+|.+.
T Consensus 68 ~EfE~V~~~aL~~l~~~-~~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~--v~~~~el~~~~~~~g~p~VlKtr~ 143 (375)
T COG0026 68 YEFENVPAEALEKLAAS-VK-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQV--VDSAEELDAAAADLGFPAVLKTRR 143 (375)
T ss_pred EeeccCCHHHHHHHHhh-cC-cCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEE--eCCHHHHHHHHHHcCCceEEEecc
Confidence 55522234445555555 33 349999999999999999999999999999998 999999999999999999999999
Q ss_pred CC-CCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEE
Q psy15251 168 GG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246 (720)
Q Consensus 168 g~-Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e 246 (720)
|| -|||.+++++.+++....+.... ....++|+|++-.+|+++-+..+.+|++.+... --++++..--...
T Consensus 144 gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~-~eN~h~~gIl~~s 215 (375)
T COG0026 144 GGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPV-AENVHRNGILRTS 215 (375)
T ss_pred ccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecc-cceeeecCEEEEE
Confidence 88 79999999999988875544321 244499999999999999999988888876531 1245555544556
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHcCC
Q psy15251 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQ 326 (720)
Q Consensus 247 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~G~ 326 (720)
.+|+ .+++++.++..+++.+++++|+|.|...|||+++ .+|++++-|+.||+.++...|...+.++-++.++|..+|.
T Consensus 216 iaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~-~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~gl 293 (375)
T COG0026 216 IAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVT-PDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGL 293 (375)
T ss_pred EecC-cCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEE-CCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCC
Confidence 7898 7999999999999999999999999999999999 8889999999999998866666666999999999999999
Q ss_pred CCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEee--cccCCCeeCCCCCCceEEEEEEcCCH
Q psy15251 327 ELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIET--GVIEGDEVSVHYDPMISKLVVWDENR 404 (720)
Q Consensus 327 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~--~v~~G~~v~~~~d~~~a~vi~~g~~~ 404 (720)
||+.+ .....+++.-+...+.... ..-..+..|.. .+.++. ..++|-++ ||+-+.+.|.
T Consensus 294 PLg~~----~~~~p~vMvNlLG~~~~~~-----~~~~~l~~p~~--~lH~YGK~e~R~gRKm--------GHvn~~~~~~ 354 (375)
T COG0026 294 PLGST----TLLSPSVMVNLLGDDVPPD-----DVKAVLALPGA--HLHWYGKAEARPGRKM--------GHVNVLGSDS 354 (375)
T ss_pred CCCCc----cccCceEEEEecCCCCchh-----hhHHHHhCCCC--EEEEecCccCCCCCee--------eeEEeecCCH
Confidence 99853 6677788887766543211 11111223321 233322 25678888 9999999996
Q ss_pred HHHHHHHHHHh
Q psy15251 405 TLALNKMKQAL 415 (720)
Q Consensus 405 ~ea~~~~~~al 415 (720)
+++.++....-
T Consensus 355 ~~~~~~~~~l~ 365 (375)
T COG0026 355 DELEQLAALLP 365 (375)
T ss_pred HHHHHHHHhhh
Confidence 66665544433
No 46
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.4e-31 Score=276.52 Aligned_cols=374 Identities=18% Similarity=0.224 Sum_probs=274.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccc-cCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTY-LNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~-~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||+|+|..-..|+.++.+.+....++....+..... +.+.+. .+. .+.+.|+++|++.++|.+++|.
T Consensus 2 kVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~-----~~~~~~-----~~~~~~~~~lv~fA~~~~idl~vVGP 71 (428)
T COG0151 2 KVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-----EAYLVN-----IEIDTDHEALVAFAKEKNVDLVVVGP 71 (428)
T ss_pred eEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch-----hhhhcc-----CccccCHHHHHHHHHHcCCCEEEECC
Confidence 89999999988888898888665443333333333221 222221 122 5789999999999999999988
Q ss_pred C-CCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 89 G-FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 89 g-~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
+ +|. ..+.+.+++.||+.+||+.++.++-++|..+|++|+++|||++.+.. +++.+++.+++++.|.|+||||..
T Consensus 72 E~pL~--~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~--f~~~e~a~ayi~~~g~piVVKadG 147 (428)
T COG0151 72 EAPLV--AGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEV--FTDPEEAKAYIDEKGAPIVVKADG 147 (428)
T ss_pred cHHHh--hhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccc--cCCHHHHHHHHHHcCCCEEEeccc
Confidence 6 333 56789999999999999999999999999999999999999999877 889999999999999999999999
Q ss_pred CCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCC--CcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeEE
Q psy15251 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFND--SKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245 (720)
Q Consensus 168 g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~--~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~ 245 (720)
-.+||||.++.+.++..+++..+... ..|++ ..++||||++ |.|++++++.|++ +++.+ ...+.|.+..
T Consensus 148 LaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~-GeE~S~~a~~DG~-~v~p~-----p~aQDhKra~ 218 (428)
T COG0151 148 LAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLD-GEEFSLQAFVDGK-TVIPM-----PTAQDHKRAY 218 (428)
T ss_pred ccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEeccc-ceEEEEEEEEcCC-eEEEC-----cccccccccc
Confidence 99999999999999999998888754 34543 4699999999 5999999999964 44433 2344454443
Q ss_pred E------------EcCCCCCCHHHHHHHH-HHHHHHHHH-----cCCcceeEEEEEEeCCCCcEEEEEecCCCC-cc-cc
Q psy15251 246 E------------EAPAPGISSEFRSRLG-STGVQVARA-----VRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ-VE-HP 305 (720)
Q Consensus 246 e------------~~Pa~~l~~~~~~~l~-~~a~~i~~a-----lg~~G~~~vEf~~~~~~g~~~~iEiNpR~~-~~-~~ 305 (720)
+ .+|+|.++++..+++. +.....++. ..|+|+....|+++ ++| |++||.|.|++ .+ ..
T Consensus 219 dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt-~~G-PkViEfN~RFGDPEtq~ 296 (428)
T COG0151 219 DGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLT-ADG-PKVIEFNARFGDPETQV 296 (428)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEc-CCC-cEEEEEecccCChhHHH
Confidence 3 3788999988776666 444444443 34699999999999 778 99999999998 33 22
Q ss_pred cccccccCcHHHHHHHHHcCCCC--CCCCCCC-CcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEE------
Q psy15251 306 VSEMITGVDLVQWQLMVASGQEL--PLKQEDL-QLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRI------ 376 (720)
Q Consensus 306 ~~e~~tGvdl~~~~l~~a~G~~l--~~~~~~~-~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~------ 376 (720)
+.. ..--||++.++..+.|.-- .....+. ..-+..+.++-||.+|..+ ............+..+
T Consensus 297 vL~-~l~sdl~~~~~a~~~g~L~~~~~~~~~~~a~v~vvlA~~GYP~~~~kG------~~I~~~~~~~~~~~~vf~Agv~ 369 (428)
T COG0151 297 VLP-LLESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGDPEKG------DVITGDEEAEEEGAKVFHAGVK 369 (428)
T ss_pred HHH-hccccHHHHHHHHHhCCccccchhhccCCceEEEEEecCCCCCCCCCC------CEEecChhhcccCcEEEEeeEe
Confidence 222 2356999999999999532 2221111 2223445566677776654 2222211000011111
Q ss_pred -e---ecccCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEecc
Q psy15251 377 -E---TGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGL 423 (720)
Q Consensus 377 -d---~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~ 423 (720)
+ .-+..|.++ -.+++.|+|.+||.++++++++.++..|.
T Consensus 370 ~~~~~~lvt~GgRv--------L~v~~~g~t~~eA~~~ay~~~~~i~~~g~ 412 (428)
T COG0151 370 LDDGGQLVTSGGRV--------LAVVGTGDTLEEAQEKAYEALEKIHFDGL 412 (428)
T ss_pred ccCCceEEecCCeE--------EEEEecCCCHHHHHHHHHHHHhhcCCCCc
Confidence 1 013456666 88999999999999999999999999885
No 47
>PRK06524 biotin carboxylase-like protein; Validated
Probab=100.00 E-value=6.4e-31 Score=287.45 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=200.3
Q ss_pred HHHHHHHHHcCCC-EEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHH
Q psy15251 70 AKILDIAVRSQCQ-AIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEE 148 (720)
Q Consensus 70 ~~i~~~a~~~~~d-aI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~ 148 (720)
..+++..++.+.. -.. |++|+..++.+|+..|++++||+++++..+.||..+|++++++|||+||+......+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~----fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~e 169 (493)
T PRK06524 94 PETLEFIKRRGPGGKAC----FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYD 169 (493)
T ss_pred HHHHHHHHhhCCCCceE----EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHH
Confidence 3456666666642 222 89999999999999999999999999999999999999999999999998864446777
Q ss_pred HHHHHHHH--hCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccccc
Q psy15251 149 ILMEQAER--IGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGN 226 (720)
Q Consensus 149 e~~~~~~~--ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~ 226 (720)
++.+.++. +||||||||..|++|+|+++|++.+|+..+++.+. +.+.++||+||. ++|++|+++.+.+|+
T Consensus 170 el~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~-GrEitVev~vd~dG~ 241 (493)
T PRK06524 170 ELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIR-NVEVCIEACVTRHGT 241 (493)
T ss_pred HHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccC-cEEEEEEEEEeCCCC
Confidence 77766665 99999999999999999999999999998776543 346899999998 599999999998887
Q ss_pred EEEEE------eeeccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEeCCCCcEEEEEec
Q psy15251 227 YVYLY------ERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV---RYHNAGTVEFIMDPSSGEFYFMEMN 297 (720)
Q Consensus 227 ~v~~~------~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEf~~~~~~g~~~~iEiN 297 (720)
++... .+++...+......+.+|+ .++++..+++.+.|.+++++| ||.|.++|||+++.++|++||+|||
T Consensus 242 Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA-~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 242 VIGPAMTSLVGYPELTPYRGGWCGNDIWPG-ALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred EEeccccccccceEEEEccCCeEEEEEccC-CCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 65421 1112111222222356787 699999999999999999998 8999999999998335889999999
Q ss_pred CCCCcccccccccc--cCcH--HHHHHHHHcCCCCCCC
Q psy15251 298 TRLQVEHPVSEMIT--GVDL--VQWQLMVASGQELPLK 331 (720)
Q Consensus 298 pR~~~~~~~~e~~t--Gvdl--~~~~l~~a~G~~l~~~ 331 (720)
||++++++++++++ |.|+ +..+++..+|.|..+.
T Consensus 321 PR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~~ 358 (493)
T PRK06524 321 PRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELD 358 (493)
T ss_pred CCcccccccchhhhccCCChhHHHHHHHHHhCCCceec
Confidence 99999999988843 3554 5555667788887654
No 48
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=100.00 E-value=9.9e-31 Score=275.41 Aligned_cols=295 Identities=22% Similarity=0.241 Sum_probs=236.3
Q ss_pred EEEcCc-HHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCC
Q psy15251 12 LIANRG-EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGF 90 (720)
Q Consensus 12 LI~~~G-~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~ 90 (720)
+..|+| ..+..+++.+|+. -...++.|+.+.......+||+++..|. ..+ ..++.++++|+++++|+++|++..
T Consensus 2 iwfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~eP~--~~~--~yv~~~l~~C~~~~Idv~~P~~~~ 76 (329)
T PF15632_consen 2 IWFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLEPA--DGE--EYVDWCLDFCKEHGIDVFVPGRNR 76 (329)
T ss_pred EEecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeecCC--CHH--HHHHHHHHHHHHhCCeEEEcCccH
Confidence 344554 5588899999986 4444555677777777888999998754 333 346789999999999999999863
Q ss_pred CcccHHHHHHHHHCCCeEeC-CCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCc---EEEeec
Q psy15251 91 LSENAEFANAVEGNRLIFVG-PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP---LMIKAV 166 (720)
Q Consensus 91 lsE~~~~a~~~~~~gl~~~G-p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~P---vvvKp~ 166 (720)
.. .......+++.|+.+.- ++.++++.+.||.++.+.|++.|||+|+++. +++.+++.++.+++++| +.+||.
T Consensus 77 ~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~--v~t~~el~~a~~~l~~~~~~~CvKP~ 153 (329)
T PF15632_consen 77 EL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWR--VRTADELKAAYEELRFPGQPLCVKPA 153 (329)
T ss_pred HH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEE--eCCHHHHHHHHHhcCCCCceEEEecc
Confidence 21 23446678889999877 7899999999999999999999999999998 99999999999998877 999999
Q ss_pred CCCCCcceEEeC-CHHHHHHHHH---------HHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecc
Q psy15251 167 RGGGGKGMRIVR-DSANFLAQLR---------SAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCS 236 (720)
Q Consensus 167 ~g~Gg~Gv~~v~-~~~el~~~~~---------~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s 236 (720)
.|.||.|.++++ +.+++...+. ...+....+-.-.++||++|++| .|++|+++++. |+++....|...
T Consensus 154 ~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~ 231 (329)
T PF15632_consen 154 VGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL 231 (329)
T ss_pred cCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec
Confidence 999999999998 5555554433 11111111111379999999995 89999999987 899987776433
Q ss_pred ccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHH
Q psy15251 237 VQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLV 316 (720)
Q Consensus 237 ~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~ 316 (720)
...|.+ +..+++.+.+.++++++|+.|.++++|+.| .+|.+++||||||+++...++..+ |+||+
T Consensus 232 --G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d-~~g~p~LLEINpR~sGGi~~s~~a-GvNlp 296 (329)
T PF15632_consen 232 --GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYD-EDGNPKLLEINPRPSGGIGYSCAA-GVNLP 296 (329)
T ss_pred --CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEc-CCCCEEEEEeCCCCccchhhHhhc-CCChH
Confidence 122222 134688999999999999999999999998 789999999999999998888755 99999
Q ss_pred HHHHHHHcCCCCCCC
Q psy15251 317 QWQLMVASGQELPLK 331 (720)
Q Consensus 317 ~~~l~~a~G~~l~~~ 331 (720)
.+.+..++|++.+..
T Consensus 297 ~la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 297 YLAVKLALGEPIPPP 311 (329)
T ss_pred HHHHHHHcCCCCCCc
Confidence 999999999987643
No 49
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.98 E-value=9.6e-31 Score=282.09 Aligned_cols=298 Identities=19% Similarity=0.223 Sum_probs=220.2
Q ss_pred CCEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHH
Q psy15251 8 LDSILIANRGE---------IACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVR 78 (720)
Q Consensus 8 ~~~iLI~~~G~---------~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~ 78 (720)
.+||.|+-+|. .|..+++++++.||+++.++.+.+..+.........+.-+. ....++. +....+.
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~ 77 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDD-NDKEDLS----LLILPSG 77 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccccc-ccccccc----hhccccc
Confidence 45788876663 37889999999999999998766532211100000010000 0000100 1011112
Q ss_pred c--CCCEEEeCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHH----HH
Q psy15251 79 S--QCQAIHPGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEI----LM 151 (720)
Q Consensus 79 ~--~~daI~pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e----~~ 151 (720)
. ++|.++|.. |...|+..+..+|+..|++++|++..+..++.||..+|++++++|||+||+.. +.+.++ +.
T Consensus 78 ~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~--~~~~~~~~~~~~ 155 (333)
T PRK01966 78 GSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVV--LTRGDWEEASLA 155 (333)
T ss_pred cCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE--EeccccchhhHH
Confidence 2 689999984 77889999999999999999999999999999999999999999999999876 443332 35
Q ss_pred HHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEE
Q psy15251 152 EQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLY 231 (720)
Q Consensus 152 ~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~ 231 (720)
.+.+.++||+||||..|++|.|+.+|++.+|+.++++.+.+. ++.++||+||+| +|+++.++++ ++.+..+.
T Consensus 156 ~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~~ 227 (333)
T PRK01966 156 EIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVPG 227 (333)
T ss_pred HHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEcccE
Confidence 566789999999999999999999999999999999887642 579999999995 9999999987 34444333
Q ss_pred eeecc-----ccccc--eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc-
Q psy15251 232 ERDCS-----VQRRH--QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE- 303 (720)
Q Consensus 232 ~r~~s-----~~r~~--~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~- 303 (720)
+..++ +...+ .......|+ .++++..+++.+.+.+++++||++|.+++||+++ ++|++||+|+|||++.+
T Consensus 228 ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~-~~g~~~vlEiNt~Pg~t~ 305 (333)
T PRK01966 228 EIVKPDDFYDYEAKYLDGSAELIIPA-DLSEELTEKIRELAIKAFKALGCSGLARVDFFLT-EDGEIYLNEINTMPGFTP 305 (333)
T ss_pred EEecCCceEcHHHccCCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEc-CCCCEEEEEeeCCCCCCc
Confidence 33221 11111 112345677 6899999999999999999999999999999999 77899999999999843
Q ss_pred ---cccccccccCcHHHHHHHH
Q psy15251 304 ---HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 304 ---~~~~e~~tGvdl~~~~l~~ 322 (720)
.|.....+|+|+.+..-++
T Consensus 306 ~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 306 ISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred ccHHHHHHHHcCCCHHHHHHHH
Confidence 2333346688888776554
No 50
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.98 E-value=4.9e-30 Score=272.05 Aligned_cols=272 Identities=18% Similarity=0.278 Sum_probs=209.1
Q ss_pred CEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHc
Q psy15251 9 DSILIANRGE---------IACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRS 79 (720)
Q Consensus 9 ~~iLI~~~G~---------~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~ 79 (720)
+||.|+-+|. .+..+.+++++.||+++.++.+.. . ++....+.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~--~--------------------------~~~~l~~~ 55 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK--E--------------------------LVAKLLEL 55 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch--h--------------------------HHHHhhcc
Confidence 4677776663 377899999999999988743210 0 01122334
Q ss_pred CCCEEEeCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhC
Q psy15251 80 QCQAIHPGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIG 158 (720)
Q Consensus 80 ~~daI~pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig 158 (720)
++|.++++. |...|+..++..|+.+|+|++|++++++.++.||..+|++|+++|||+|++.. +.+. ....+.++
T Consensus 56 ~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~--~~~~---~~~~~~~~ 130 (296)
T PRK14569 56 KPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKF--LTDK---LVAEDEIS 130 (296)
T ss_pred CCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEE--Echh---hhhHhhcC
Confidence 789888865 55568899999999999999999999999999999999999999999999865 4332 12356789
Q ss_pred CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeee--cc
Q psy15251 159 YPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERD--CS 236 (720)
Q Consensus 159 ~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~--~s 236 (720)
||+||||..|++|+|+.+|++.+||.++++.+.. .+.++||+||+ ++|+++.++.+.....+.+.... ..
T Consensus 131 ~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~-G~E~tv~vl~~~~~~~~~i~~~~~~~~ 202 (296)
T PRK14569 131 FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVT-GKEITVAIVNDEVYSSVWIEPQNEFYD 202 (296)
T ss_pred CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccc-cEEEEEEEECCcCcceEEEecCCCcCC
Confidence 9999999999999999999999999999987642 35899999999 49999999876432222221110 01
Q ss_pred cc-ccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc----cccccccc
Q psy15251 237 VQ-RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE----HPVSEMIT 311 (720)
Q Consensus 237 ~~-r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~----~~~~e~~t 311 (720)
.. ....+.....|+ .++++..+++.+.+.+++++||++|.+++||+++ ++|++||+|||||++.+ .|......
T Consensus 203 ~~~k~~~~~~~~~P~-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~ 280 (296)
T PRK14569 203 YESKYSGKSIYHSPS-GLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYD-DRGNFYIMEINSSPGMTDNSLSPKSAAAE 280 (296)
T ss_pred hhhccCCCcEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEc-CCCCEEEEEeeCCCCCCCcCHHHHHHHHc
Confidence 11 112334455787 5888899999999999999999999999999999 78899999999999833 44455566
Q ss_pred cCcHHHHHHHHH
Q psy15251 312 GVDLVQWQLMVA 323 (720)
Q Consensus 312 Gvdl~~~~l~~a 323 (720)
|+|+.++..++.
T Consensus 281 G~~~~~li~~ii 292 (296)
T PRK14569 281 GVDFDSFVKRII 292 (296)
T ss_pred CCCHHHHHHHHH
Confidence 999888876654
No 51
>PRK06849 hypothetical protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=287.00 Aligned_cols=278 Identities=15% Similarity=0.103 Sum_probs=211.6
Q ss_pred CCCEEEEEcCcH-HHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 7 VLDSILIANRGE-IACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 7 ~~~~iLI~~~G~-~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
..++|||+|.+. +++.++|++++.|++++++++++...+.+++++|+.+.++. +..+.....+.|+++++++++|+|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~-p~~d~~~~~~~L~~i~~~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPS-PRWDPDAYIQALLSIVQRENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCC-CCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 357999999765 79999999999999999998887777778889999998753 2223333468999999999999999
Q ss_pred eCCCCCcccHHHHHHHH--HCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh-CCcEE
Q psy15251 86 PGYGFLSENAEFANAVE--GNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLM 162 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~--~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i-g~Pvv 162 (720)
|+.+.. ..++...+ +.++.+++|+.++++.++||..++++++++|||+|+++. +++.+++.++..+. +||+|
T Consensus 82 P~~e~~---~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~--v~~~~~l~~~~~~~~~~P~v 156 (389)
T PRK06849 82 PTCEEV---FYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYL--ITDPEAIRNFMFKTPHTPYV 156 (389)
T ss_pred ECChHH---HhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE--eCCHHHHHHHhhcCCCCcEE
Confidence 998732 22222222 235677899999999999999999999999999999998 88999998887776 99999
Q ss_pred EeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccce
Q psy15251 163 IKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQ 242 (720)
Q Consensus 163 vKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~ 242 (720)
+||..|+||.|+.++.+.+++... . ...+.++++||||+| .++++..+.. +|+++..............
T Consensus 157 lKP~~~~~~~~v~~~~~~~~l~~~----~-----~~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~ 225 (389)
T PRK06849 157 LKPIYSRFVRRVDLLPKEAALKEL----P-----ISKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSG 225 (389)
T ss_pred EEeCcccCCCeEEEecCHHHhccc----c-----cCCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCC
Confidence 999999999999999885443221 1 011357999999996 6777777664 3676654321100000000
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCccccccc
Q psy15251 243 KIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSE 308 (720)
Q Consensus 243 k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e 308 (720)
-.+...|. ..++|.+.+.++++++||+|.+++||+++ ++|++|+||||||+++..+++.
T Consensus 226 ~~~~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~~~-~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 226 AQIAFQPI------NHPRIEEFVTHFVKELNYTGQISFDFIET-ENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred ceeEeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEEEC-CCCCEEEEEecCCCCceeEEcC
Confidence 01111121 24689999999999999999999999999 7899999999999998776664
No 52
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.97 E-value=2e-29 Score=269.14 Aligned_cols=273 Identities=21% Similarity=0.325 Sum_probs=214.3
Q ss_pred CCCEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHH
Q psy15251 7 VLDSILIANRGE---------IACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 7 ~~~~iLI~~~G~---------~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
|.++|.|+-+|. .+..++++++++|++++.+..+.+ +++.++
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~~ 53 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQLK 53 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHhc
Confidence 445788877553 378999999999999988843321 123344
Q ss_pred HcCCCEEEeCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHH
Q psy15251 78 RSQCQAIHPGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAER 156 (720)
Q Consensus 78 ~~~~daI~pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ 156 (720)
..++|.|++.+ |...|+..+...++..|++++|++..++..+.||..++++|+++|||+|++.. +.+.+++..++++
T Consensus 54 ~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~--~~~~~~~~~~~~~ 131 (304)
T PRK01372 54 ELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIV--LTREEDLLAAIDK 131 (304)
T ss_pred cCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE--EeCcchHHHHHhh
Confidence 56799999875 33457788899999999999999999999999999999999999999999987 7888888888899
Q ss_pred hCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecc
Q psy15251 157 IGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCS 236 (720)
Q Consensus 157 ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s 236 (720)
++||+|+||..|+||+|+.++++.+|+.++++.+.. + +..+++|+||+ ++|+++.++.+.. +.+..+.+.
T Consensus 132 ~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~E~~v~vi~~~~---~~~~~~~~~ 201 (304)
T PRK01372 132 LGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIK-GRELTVAVLGGKA---LPVIEIVPA 201 (304)
T ss_pred cCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccC-CEEEEEEEECCCc---cceEEEEec
Confidence 999999999999999999999999999998877642 2 57899999999 5999999987642 222222111
Q ss_pred -----ccccc--eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc----cc
Q psy15251 237 -----VQRRH--QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE----HP 305 (720)
Q Consensus 237 -----~~r~~--~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~----~~ 305 (720)
..... .......|+ .++++..++|.+.+.++++++|++|.+++||+++ ++|++||+|+|+|++.. .+
T Consensus 202 ~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~-~~g~~~viEvN~~p~~~~~~~~~ 279 (304)
T PRK01372 202 GEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLD-EDGKPYLLEVNTQPGMTSHSLVP 279 (304)
T ss_pred CCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEc-CCCCEEEEEecCCCCCCcccHHH
Confidence 11111 112334565 5888999999999999999999999999999999 77899999999999743 22
Q ss_pred cccccccCcHHHHHHHH
Q psy15251 306 VSEMITGVDLVQWQLMV 322 (720)
Q Consensus 306 ~~e~~tGvdl~~~~l~~ 322 (720)
......|+|+.+....+
T Consensus 280 ~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 280 MAARAAGISFSELVDRI 296 (304)
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 22233488877766554
No 53
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.97 E-value=4.6e-29 Score=267.70 Aligned_cols=274 Identities=21% Similarity=0.305 Sum_probs=205.4
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHH-HHHH-HHHcCCCEEEeCC-CCCcccHH
Q psy15251 20 ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAK-ILDI-AVRSQCQAIHPGY-GFLSENAE 96 (720)
Q Consensus 20 a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~-i~~~-a~~~~~daI~pg~-g~lsE~~~ 96 (720)
+..++++++++|++++.++.+++.... +.+... +... .....+|+|+|.. |...|+..
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~ 80 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSWT-------------------YKDLPQLILELGALLEGIDVVFPVLHGRYGEDGT 80 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCcccc-------------------ccchHHHHhhccccCCCCCEEEEecCCCCCCCcH
Confidence 889999999999999999766543220 011111 1111 1225689999975 45567888
Q ss_pred HHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCC-CHH---HH--HHHHHHhCCcEEEeecCCCC
Q psy15251 97 FANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQ-NEE---IL--MEQAERIGYPLMIKAVRGGG 170 (720)
Q Consensus 97 ~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~-s~~---e~--~~~~~~ig~PvvvKp~~g~G 170 (720)
++..++.+|++++|+++.++..+.||..++++|+++|||+|++.. +. +.+ ++ ..+.+.++||+|+||..|+|
T Consensus 81 ~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~ 158 (315)
T TIGR01205 81 IQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIV--LTQNRASADELECEQVAEPLGFPVIVKPAREGS 158 (315)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE--EecccccchhhhHHHHHHhcCCCEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999876 43 332 22 23446789999999999999
Q ss_pred CcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEE-Eeeeccc---ccc-c-eeE
Q psy15251 171 GKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYL-YERDCSV---QRR-H-QKI 244 (720)
Q Consensus 171 g~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~-~~r~~s~---~r~-~-~k~ 244 (720)
|+|+.++++.+|+.++++.+... +..+++|+||+ ++|+++.+++++++..+.. ..+.+.. ... + ...
T Consensus 159 s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~-G~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T TIGR01205 159 SVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGST 231 (315)
T ss_pred ccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCC-CEEEEEEEECCCCccceEEecCCCCCeeCcccccCCCCe
Confidence 99999999999999998876532 56899999999 6999999998653322221 1111101 000 1 112
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc----cccccccccCcHHHHHH
Q psy15251 245 IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE----HPVSEMITGVDLVQWQL 320 (720)
Q Consensus 245 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~----~~~~e~~tGvdl~~~~l 320 (720)
....|+ .++++..++|.+.+.+++++||+.|.+++||+++ ++|++||+|+|||++.. .+..-...|+|+.++..
T Consensus 232 ~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~ 309 (315)
T TIGR01205 232 EYVIPA-PLDEELEEKIKELALKAYKALGCRGLARVDFFLD-EEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVE 309 (315)
T ss_pred eEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEe-CCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHH
Confidence 233566 5899999999999999999999999999999999 77789999999998743 22222345888888776
Q ss_pred HHH
Q psy15251 321 MVA 323 (720)
Q Consensus 321 ~~a 323 (720)
.+.
T Consensus 310 ~ii 312 (315)
T TIGR01205 310 RIL 312 (315)
T ss_pred HHH
Confidence 654
No 54
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.97 E-value=3.8e-29 Score=270.79 Aligned_cols=294 Identities=19% Similarity=0.171 Sum_probs=212.8
Q ss_pred CEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEeeCCCCCCcccccc------c--EEEEeCCCCCcccccCHHH
Q psy15251 9 DSILIANRGE---------IACRIMRTAKKMGIRVVSVYSDIDADALHVKMA------D--EAYRLEGKSSLDTYLNQAK 71 (720)
Q Consensus 9 ~~iLI~~~G~---------~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~a------D--~~~~i~~~~~~~~~~~~~~ 71 (720)
+||.|+-+|. .|..+++++++.||+++.++-+.+..+...... + ..+.+.|. .+...
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 77 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPD------RKVHG 77 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccc------ccccc
Confidence 4777776663 378899999999999999976654322100000 0 00111110 00000
Q ss_pred HHHH----HHHcCCCEEEeC-CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCC
Q psy15251 72 ILDI----AVRSQCQAIHPG-YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQN 146 (720)
Q Consensus 72 i~~~----a~~~~~daI~pg-~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s 146 (720)
+... .+..++|.++|. +|...|+..+..+++..|+|++|++..+..++.||..+|++|+++|||+|++.. +.+
T Consensus 78 ~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~--~~~ 155 (343)
T PRK14568 78 LLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWT--VTA 155 (343)
T ss_pred ccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE--EEC
Confidence 0000 123568999998 477789999999999999999999999999999999999999999999999886 544
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccccc
Q psy15251 147 EEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGN 226 (720)
Q Consensus 147 ~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~ 226 (720)
.++.. .+.++||+||||..+++|+|+.+|++.+||.++++.+.+. ++.+|||+||+ ++|+++.+++++.+-
T Consensus 156 ~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~-G~E~sv~vl~~~~~~ 226 (343)
T PRK14568 156 DERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVV-GSEVGCAVLGNGADL 226 (343)
T ss_pred Cchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcC-CEEEEEEEEcCCCCc
Confidence 44332 3578999999999999999999999999999999877543 57899999999 599999999875322
Q ss_pred EEEEEeeec---ccccccee---------EEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEE
Q psy15251 227 YVYLYERDC---SVQRRHQK---------IIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFM 294 (720)
Q Consensus 227 ~v~~~~r~~---s~~r~~~k---------~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~i 294 (720)
.+.-..+-+ ...+.++| .....|+ .++++..+++.+.+.+++++||++|.+++||+++ ++|++||+
T Consensus 227 ~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~-~~g~~~ll 304 (343)
T PRK14568 227 VVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPA-DISAEERSRVQETAKAIYRALGCRGLARVDMFLQ-EDGTVVLN 304 (343)
T ss_pred ceecceEEecCCCccchhhhhccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEe-CCCCEEEE
Confidence 221111000 11111111 2235677 6899999999999999999999999999999999 78999999
Q ss_pred EecCCCCccc----ccccccccCcHHHHHHH
Q psy15251 295 EMNTRLQVEH----PVSEMITGVDLVQWQLM 321 (720)
Q Consensus 295 EiNpR~~~~~----~~~e~~tGvdl~~~~l~ 321 (720)
|||++++.+. |..-.+.|+++.+..-+
T Consensus 305 EINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 305 EVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 9999998542 22223458876665543
No 55
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.97 E-value=3.1e-31 Score=233.75 Aligned_cols=107 Identities=44% Similarity=0.773 Sum_probs=102.3
Q ss_pred EEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec
Q psy15251 343 ETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422 (720)
Q Consensus 343 ~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G 422 (720)
|||||||||.++|+|++|+|..+.+|. +++||+|+++.+|+.|+++||||+||||+||.||++|+++|.+||+++.|.|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~-g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPG-GPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SS-STTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCC-CCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC
Confidence 799999999999999999999999997 6999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhccCcccccccccccccc
Q psy15251 423 LDTNINFLINLCSNDHFIQGDIHTGFID 450 (720)
Q Consensus 423 ~~tn~~~l~~~~~~~~f~~~~~~t~~~~ 450 (720)
+.||++||++||.||+|++|+++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 9999999999999999999999999996
No 56
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=1.1e-28 Score=267.56 Aligned_cols=304 Identities=17% Similarity=0.228 Sum_probs=214.8
Q ss_pred CEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccC----HHHH--H
Q psy15251 9 DSILIANRGEI---------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLN----QAKI--L 73 (720)
Q Consensus 9 ~~iLI~~~G~~---------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~----~~~i--~ 73 (720)
.||.|+-+|.. |..+++++++.||+++.++.+.+......+..+..+..........+.. ...+ .
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence 46777766633 8889999999999999997666532211111111111000000000000 0000 0
Q ss_pred HHHHHcCCCEEEeCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCC----CCHH
Q psy15251 74 DIAVRSQCQAIHPGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED----QNEE 148 (720)
Q Consensus 74 ~~a~~~~~daI~pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~----~s~~ 148 (720)
......++|.++++. |...|+..+...++.+|+|++|++..++..+.||..+|++|+++|||+|++....- .+.+
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~ 161 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPR 161 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChH
Confidence 112234688888775 66679999999999999999999999999999999999999999999999875110 2344
Q ss_pred HHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccc-c--
Q psy15251 149 ILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY-G-- 225 (720)
Q Consensus 149 e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~-G-- 225 (720)
++.+..++++||+||||..|++|+||.+|++.+||..+++.+... ++.+|||+||+| +|+++.++.+.. |
T Consensus 162 ~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~~~~g~~ 234 (347)
T PRK14572 162 KTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLERYRGGKR 234 (347)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeCccCCCC
Confidence 444556779999999999999999999999999999999887532 578999999995 999999997532 3
Q ss_pred cEEEEEeeeccc-------cccc--eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEe
Q psy15251 226 NYVYLYERDCSV-------QRRH--QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEM 296 (720)
Q Consensus 226 ~~v~~~~r~~s~-------~r~~--~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEi 296 (720)
+.+.+...+... ...+ .......|+ .+++++.+++.+.+.+++++||++|..++||+++ +|++|++|+
T Consensus 235 ~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~--~~~~~vlEi 311 (347)
T PRK14572 235 NPIALPATEIVPGGEFFDFESKYKQGGSEEITPA-RISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV--DGEPHILET 311 (347)
T ss_pred CceecccEEEecCCCccCHHHccCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE--CCcEEEEee
Confidence 222332221111 0011 122345687 6899999999999999999999999999999998 477999999
Q ss_pred cCCCCcc----cccccccccCcHHHHHHHH
Q psy15251 297 NTRLQVE----HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 297 NpR~~~~----~~~~e~~tGvdl~~~~l~~ 322 (720)
|++++.+ .|..-...|+++.+..-++
T Consensus 312 Nt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 312 NTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999843 2322335588877766544
No 57
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=2.3e-28 Score=264.98 Aligned_cols=302 Identities=16% Similarity=0.167 Sum_probs=214.5
Q ss_pred CCEEEEEcCcHH---------HHHHHHHH-HHcCCcEEEEeeCCC-CCCcccccccEEEEeCCCCCcccccC------HH
Q psy15251 8 LDSILIANRGEI---------ACRIMRTA-KKMGIRVVSVYSDID-ADALHVKMADEAYRLEGKSSLDTYLN------QA 70 (720)
Q Consensus 8 ~~~iLI~~~G~~---------a~~iira~-~~~G~~~v~v~s~~d-~~~~~~~~aD~~~~i~~~~~~~~~~~------~~ 70 (720)
.++|.|+-+|.. |..|++++ .+.+|+++.++-+.+ ..+... +................ ..
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLL---DSVPDPPKLIKRDVLPIVSLIPGCG 78 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEec---Ccccccccccccccccccccccccc
Confidence 457888877643 88899999 678999999876655 222111 10000000000000000 00
Q ss_pred HHHHHHHHcCCCEEEeCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCC----CC
Q psy15251 71 KILDIAVRSQCQAIHPGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGE----DQ 145 (720)
Q Consensus 71 ~i~~~a~~~~~daI~pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~----~~ 145 (720)
.+.. .+..++|.++|.. |...|+..+..+++.+|+|++|++..+..++.||..+|++|+++|||+||+.... ..
T Consensus 79 ~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~ 157 (364)
T PRK14570 79 IFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFL 157 (364)
T ss_pred cccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccccc
Confidence 0110 1224689999875 5667999999999999999999999999999999999999999999999975411 12
Q ss_pred CHHHHHH-HHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccc
Q psy15251 146 NEEILME-QAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY 224 (720)
Q Consensus 146 s~~e~~~-~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~ 224 (720)
+.+++.+ +.+.+|||+||||..+++|.|+.++++.+|+.++++.+... ++.+|||+||+ ++|++|.++++..
T Consensus 158 ~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~-GrEi~v~Vlg~~~ 230 (364)
T PRK14570 158 DKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIE-AREIECSVIGNEQ 230 (364)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcC-CEEEEEEEECCCC
Confidence 3455543 34679999999999999999999999999999999987642 57899999999 5999999998754
Q ss_pred ccEEEEEeeec------ccccc-----ceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEE
Q psy15251 225 GNYVYLYERDC------SVQRR-----HQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYF 293 (720)
Q Consensus 225 G~~v~~~~r~~------s~~r~-----~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~ 293 (720)
..+....+... .+... ........|+ .++++..+++.+.|.+++++||++|.+.+||++++++|++||
T Consensus 231 ~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yv 309 (364)
T PRK14570 231 IKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPA-HLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYL 309 (364)
T ss_pred ceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEE
Confidence 34433333211 01100 1122345787 699999999999999999999999999999999833588999
Q ss_pred EEecCCCCcc----cccccccccCcHHHHHHH
Q psy15251 294 MEMNTRLQVE----HPVSEMITGVDLVQWQLM 321 (720)
Q Consensus 294 iEiNpR~~~~----~~~~e~~tGvdl~~~~l~ 321 (720)
+|+||++|-+ .|..-...|+++.+..-+
T Consensus 310 lEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 341 (364)
T PRK14570 310 NEINTIPGFTDISMFAKMCEHDGLQYKSLVDN 341 (364)
T ss_pred EEeeCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 9999999843 222222458876655443
No 58
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.96 E-value=5.4e-30 Score=226.46 Aligned_cols=107 Identities=44% Similarity=0.781 Sum_probs=104.8
Q ss_pred EEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec
Q psy15251 343 ETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422 (720)
Q Consensus 343 ~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G 422 (720)
|||||||||.++|+|++|+|..+++|. ++|||+|+++.+|+.|+++||||+||+|+||+||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~-g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPG-GPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCC-CCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC
Confidence 689999999999999999999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhccCcccccccccccccc
Q psy15251 423 LDTNINFLINLCSNDHFIQGDIHTGFID 450 (720)
Q Consensus 423 ~~tn~~~l~~~~~~~~f~~~~~~t~~~~ 450 (720)
+.||++||++||.+|+|++|+++|+||+
T Consensus 80 v~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 9999999999999999999999999985
No 59
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.96 E-value=9e-27 Score=247.92 Aligned_cols=260 Identities=18% Similarity=0.233 Sum_probs=194.8
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC-CCCcccHHHH
Q psy15251 20 ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY-GFLSENAEFA 98 (720)
Q Consensus 20 a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~-g~lsE~~~~a 98 (720)
+..+++++++.|++++.++.+.+. +..+.+..++|.+++.. |...|+..+.
T Consensus 21 ~~~i~~al~~~g~~~~~i~~~~~~----------------------------~~~~~~~~~~D~v~~~~~g~~ge~~~~~ 72 (299)
T PRK14571 21 GERVKKALEKLGYEVTVFDVDEDF----------------------------LKKVDQLKSFDVVFNVLHGTFGEDGTLQ 72 (299)
T ss_pred HHHHHHHHHHcCCeEEEEccCchH----------------------------HHHhhhccCCCEEEEeCCCCCCCccHHH
Confidence 788999999999999888543210 00111223578888865 4445788899
Q ss_pred HHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeC
Q psy15251 99 NAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178 (720)
Q Consensus 99 ~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~ 178 (720)
..++.+|+|++|+++.++..+.||..++++++ .|||+|++.. +.+.. ....++||+|+||..|+||+||.+|+
T Consensus 73 ~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~--~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~ 145 (299)
T PRK14571 73 AILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVE--IKEFM----KTSPLGYPCVVKPRREGSSIGVFICE 145 (299)
T ss_pred HHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEE--Eechh----hhhhcCCCEEEecCCCCCcCCEEEEC
Confidence 99999999999999999999999999999998 5899999876 44322 24568999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccccc-EEEEEeeec-----cccccc--eeEEEEcCC
Q psy15251 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGN-YVYLYERDC-----SVQRRH--QKIIEEAPA 250 (720)
Q Consensus 179 ~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~-~v~~~~r~~-----s~~r~~--~k~~e~~Pa 250 (720)
+.+|+.++++.+... .+.++||+||+ ++|+++.+++++.+. ++.+.+..- .....+ .......|+
T Consensus 146 ~~~el~~~~~~~~~~------~~~vlVEeyI~-G~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~ 218 (299)
T PRK14571 146 SDEEFQHALKEDLPR------YGSVIVQEYIP-GREMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPA 218 (299)
T ss_pred CHHHHHHHHHHHHhh------CCcEEEEcccc-ceEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeCC
Confidence 999999988765432 46899999999 589999999986433 222322110 000000 112224576
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc----cccccccccCcHHH---HHHHHH
Q psy15251 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE----HPVSEMITGVDLVQ---WQLMVA 323 (720)
Q Consensus 251 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~----~~~~e~~tGvdl~~---~~l~~a 323 (720)
.++++..++|.+.+.++++++|++|.+++||+++ +|++||+|+|++++.. .|..-...|+|+.+ ..++.+
T Consensus 219 -~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~--~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a 295 (299)
T PRK14571 219 -PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS--DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSA 295 (299)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE--CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998 4679999999999843 22122245887776 444444
Q ss_pred c
Q psy15251 324 S 324 (720)
Q Consensus 324 ~ 324 (720)
+
T Consensus 296 ~ 296 (299)
T PRK14571 296 F 296 (299)
T ss_pred H
Confidence 3
No 60
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.95 E-value=1.7e-26 Score=276.35 Aligned_cols=299 Identities=19% Similarity=0.187 Sum_probs=217.8
Q ss_pred CCEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHH
Q psy15251 8 LDSILIANRGEI---------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVR 78 (720)
Q Consensus 8 ~~~iLI~~~G~~---------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~ 78 (720)
++||.|+-+|.. |..+++++++.||+++.++-+.+..... ................+ . ..+.. ..
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~--~~ 524 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWET--VSSLETAIEEDSGKSVL-S-SEIAQ--AL 524 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEe--ccccccccccccccccc-c-hhhhh--cc
Confidence 457777766633 8889999999999999987655432211 10000000000000011 1 01110 11
Q ss_pred cCCCEEEeCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCC------CHH-HH
Q psy15251 79 SQCQAIHPGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQ------NEE-IL 150 (720)
Q Consensus 79 ~~~daI~pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~------s~~-e~ 150 (720)
.++|.++|.. |...|+..+...|+.+|+|++|++..+...+.||..+|++++++|||+||+.. ++ +.+ .+
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~--~~~~~~~~~~~~~~ 602 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQP--LTLAGWKREPELCL 602 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE--EechhcccChHHHH
Confidence 4689999875 66779999999999999999999999999999999999999999999999875 33 122 33
Q ss_pred HHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEE-
Q psy15251 151 MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY- 229 (720)
Q Consensus 151 ~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~- 229 (720)
.++.+++|||+||||..+++|+|+.+|++.+|+.++++.+... +.++|||+|+.+++|++|.++++..+..+.
T Consensus 603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~ 676 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVIA 676 (809)
T ss_pred HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEec
Confidence 4567789999999999999999999999999999999887632 678999999988899999999987653322
Q ss_pred -EEeeecc-----ccccce-----eEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecC
Q psy15251 230 -LYERDCS-----VQRRHQ-----KIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298 (720)
Q Consensus 230 -~~~r~~s-----~~r~~~-----k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNp 298 (720)
..++.+. ++..+. ......|+ .+++++.+++.+.|.++.++||++|.+.+||+++ ++|++||+|+||
T Consensus 677 ~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~-~~g~~yv~EiNt 754 (809)
T PRK14573 677 GPHERRGSGGFIDYQEKYGLSGKSSAQIVFDL-DLSKESQEQVLELAERIYRLLQGKGSCRIDFFLD-EEGNFWLSEMNP 754 (809)
T ss_pred cceEEccCCCeeCchhcccCCCCCceEEecCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEc-CCCCEEEEEeeC
Confidence 2222221 111111 11223566 6999999999999999999999999999999999 778999999999
Q ss_pred CCCcc----cccccccccCcHHHHHHHH
Q psy15251 299 RLQVE----HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 299 R~~~~----~~~~e~~tGvdl~~~~l~~ 322 (720)
|+|-+ .|..-...|+++.+..-++
T Consensus 755 ~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 755 IPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 99944 2333335588766554443
No 61
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=229.54 Aligned_cols=349 Identities=19% Similarity=0.194 Sum_probs=244.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcc--cccCHHHHHHHHHHcC--CCE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLD--TYLNQAKILDIAVRSQ--CQA 83 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~--~~~~~~~i~~~a~~~~--~da 83 (720)
+-|||++| -..+.+..+|.++||+|..+....+.+.. ..++..+...+...-. ..+|.++|++++.... +|+
T Consensus 11 ~~kiLviG--vntR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~ 86 (389)
T COG2232 11 SCKILVIG--VNTRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA 86 (389)
T ss_pred cceEEEEe--ecchHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence 45789984 55889999999999999988543333332 4466666554433222 2567889999998765 777
Q ss_pred -EEeCCCCCcccHHHHHHHHHCCCeEeCCCHH-HHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcE
Q psy15251 84 -IHPGYGFLSENAEFANAVEGNRLIFVGPSSE-AIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPL 161 (720)
Q Consensus 84 -I~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~-~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~Pv 161 (720)
++|+.||-..+ .--..+..+.|++++ ....+.+|..+.+.+..+|.|.|+.+. . +.+ ..--+++
T Consensus 87 ~ii~~sg~e~l~-----~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~--~---e~~----~~gekt~ 152 (389)
T COG2232 87 PIIPFSGFEALR-----TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKK--I---EPL----EEGEKTL 152 (389)
T ss_pred eeeecccccccc-----ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhh--h---hhh----hhcceee
Confidence 77877764322 113455667788877 888889999999999999999998654 2 221 1123689
Q ss_pred EEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccc---
Q psy15251 162 MIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ--- 238 (720)
Q Consensus 162 vvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~--- 238 (720)
|+||+.|+||. +.++.-.++.. ..++++|+||+ |+++++.+++++. ..+.+...+.-+.
T Consensus 153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~-G~p~Svs~is~g~-~a~~la~N~QiI~~~~ 214 (389)
T COG2232 153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIE-GRPVSVSFISNGS-DALTLAVNDQIIDGLR 214 (389)
T ss_pred EEeeccCCCce-eeecccccccC---------------CcceehhhhcC-CceeEEEEEecCc-ceEEEEEeeeeecccc
Confidence 99999999996 33332212210 26899999999 5999999999975 3333321111011
Q ss_pred -ccceeE--EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcH
Q psy15251 239 -RRHQKI--IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDL 315 (720)
Q Consensus 239 -r~~~k~--~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl 315 (720)
.+.|.. ....|.+ .. ..+++.+.|..++..||+.|...|||+++ +.| +|+||+|||+|++...+|+++|+|+
T Consensus 215 ~~~~~f~Y~GNlTP~~--~~-~~ee~e~la~elV~~lgL~GsnGVDfvl~-d~g-pyViEVNPR~qGt~e~iE~s~giNl 289 (389)
T COG2232 215 GEYSQFVYKGNLTPFP--YE-EVEEAERLAEELVEELGLVGSNGVDFVLN-DKG-PYVIEVNPRIQGTLECIERSSGINL 289 (389)
T ss_pred cccccceeccCcCCCc--ch-hhHHHHHHHHHHHHHhccccccccceEee-cCC-cEEEEecCcccchHHHHHHhcCCCH
Confidence 011111 2224443 22 23889999999999999999999999999 555 9999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccCCCeeCCCCCCceE
Q psy15251 316 VQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMIS 395 (720)
Q Consensus 316 ~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~G~~v~~~~d~~~a 395 (720)
+++++.+..|+-. +.+.++++++..-+|+... -+.|..-.....+.|. +|.. +..|+++ +
T Consensus 290 ~~lHi~af~G~Lp----Er~kpr~~a~krILyap~~--v~v~~l~~~~~~DiP~--~Gtv----iekgePl--------~ 349 (389)
T COG2232 290 FRLHIQAFDGELP----ERPKPRGYACKRILYAPRT--VRVPILKLSWTHDIPR--PGTV----IEKGEPL--------C 349 (389)
T ss_pred HHHHHHHhcCcCc----CCCCcceeEEeEEEeccce--eecccccccccccCCC--CCcc----cCCCCce--------e
Confidence 9999999999743 3557889998777887543 2333221211224553 4533 4678877 9
Q ss_pred EEEEEcCCHHHHHHHHHHHhhc
Q psy15251 396 KLVVWDENRTLALNKMKQALSQ 417 (720)
Q Consensus 396 ~vi~~g~~~~ea~~~~~~al~~ 417 (720)
.||+.+.+++.|..-+.+.+..
T Consensus 350 sviA~~nt~~~a~~~~er~~er 371 (389)
T COG2232 350 SVIASSNTRSGAESMAERLAER 371 (389)
T ss_pred eeeeccCCHHHHHHHHHHHHHH
Confidence 9999999999999877776654
No 62
>KOG0370|consensus
Probab=99.94 E-value=5.5e-27 Score=260.06 Aligned_cols=377 Identities=18% Similarity=0.285 Sum_probs=309.3
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHH
Q psy15251 7 VLDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 7 ~~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
+.+|+||+|.|.. +...++++|+.|+.++++.++.........+||..|.+| ...+.+...
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp--------vT~~~vt~v 447 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP--------VTPEYVTKV 447 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee--------cCHHHHHHH
Confidence 4689999998754 667899999999999999666555555566899999997 577788889
Q ss_pred HHHcCCCEEEeCCCCCcc-cH--HH--HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHH
Q psy15251 76 AVRSQCQAIHPGYGFLSE-NA--EF--ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEIL 150 (720)
Q Consensus 76 a~~~~~daI~pg~g~lsE-~~--~~--a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~ 150 (720)
.+...+|+|+.++|.-.- |- .+ ...+++.+....|.+.+++....|+..+-+.+.+.+.++.|... +++.+++
T Consensus 448 i~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a--~~sie~a 525 (1435)
T KOG0370|consen 448 IKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEA--VSTIEEA 525 (1435)
T ss_pred HHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhh--HhHHHHH
Confidence 999999999998874221 11 12 23667788889999999999999999999999999999999887 8999999
Q ss_pred HHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEE
Q psy15251 151 MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYL 230 (720)
Q Consensus 151 ~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~ 230 (720)
.++++++|||||+.+.+.-||.|--++.+++||.+....+.+. ...+++|+-+.|..|+|.+++.|..+|++.+
T Consensus 526 l~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciTv 599 (1435)
T KOG0370|consen 526 LEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCITV 599 (1435)
T ss_pred HHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccccchhhh
Confidence 9999999999999999999999999999999999887776543 6899999999999999999999999999877
Q ss_pred Eeeeccccccc------eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCccc
Q psy15251 231 YERDCSVQRRH------QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEH 304 (720)
Q Consensus 231 ~~r~~s~~r~~------~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~ 304 (720)
|.+.... ...+..+|+..++++..+.++..+.++.+++|..|-+++++-++|..-++++||+|+|++.+.
T Consensus 600 ----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrss 675 (1435)
T KOG0370|consen 600 ----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSS 675 (1435)
T ss_pred ----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehh
Confidence 5655432 345667899999999999999999999999999999999999997777899999999999999
Q ss_pred ccccccccCcHHHHHHHHHcCCCCCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCC--CcEEEeecccC
Q psy15251 305 PVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHS--DTIRIETGVIE 382 (720)
Q Consensus 305 ~~~e~~tGvdl~~~~l~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~--~~vr~d~~v~~ 382 (720)
.+...+||..|.....++++|.+||..+..++....| .|.|+...+. .+.|.++ +..|+.+.+.+
T Consensus 676 aLASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~A------------cFEpslDY~v-~KiprWDl~kf~~vs~~igs 742 (1435)
T KOG0370|consen 676 ALASKATGYPLAYTAAKLALGIPLPELKNSVTKTTTA------------CFEPSLDYCV-VKIPRWDLSKFQRVSTEIGS 742 (1435)
T ss_pred hhhccCccCcHHHHHHHHhcCcccccCCcccccceec------------ccCcchhhee-eecccccHHHHHHHHHhhch
Confidence 9999999999999999999999998665544433333 3777766543 3444431 23344333322
Q ss_pred CCeeCCCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEeccc
Q psy15251 383 GDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLD 424 (720)
Q Consensus 383 G~~v~~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G~~ 424 (720)
.. - ..|.+++.|++++||++|+.|..+. .+.|+.
T Consensus 743 sm------K-SvgEvm~iGR~feea~QKalr~vd~-~~~Gf~ 776 (1435)
T KOG0370|consen 743 SM------K-SVGEVMAIGRTFEEAFQKALRMVDP-SLLGFM 776 (1435)
T ss_pred hh------h-hhhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc
Confidence 11 1 1399999999999999999999875 566765
No 63
>KOG0370|consensus
Probab=99.94 E-value=4.7e-25 Score=244.82 Aligned_cols=304 Identities=19% Similarity=0.280 Sum_probs=262.3
Q ss_pred CCEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHH
Q psy15251 8 LDSILIANRGEI-----------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIA 76 (720)
Q Consensus 8 ~~~iLI~~~G~~-----------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a 76 (720)
.+-++|+|.|.. |+..+|++|++|++++.|..+|..-+...+.||+.|+ ..+..+.++++-
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYF--------eeis~E~vmDiY 989 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYF--------EEISYERVMDIY 989 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhH--------hhhhhhhhhhhh
Confidence 457899998854 8899999999999999999999999999999999887 447788999999
Q ss_pred HHcCCCEEEeCCCC-CcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHH
Q psy15251 77 VRSQCQAIHPGYGF-LSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAE 155 (720)
Q Consensus 77 ~~~~~daI~pg~g~-lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~ 155 (720)
..++..+|+...|. +.. ..+-.+.+.|..++|.+|+.+..+.|+.++.+.|.+.||..|+|.. .++.+++.+|++
T Consensus 990 e~E~~~G~iis~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wke--lt~~~eA~~F~~ 1065 (1435)
T KOG0370|consen 990 ELENSEGIIISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKE--LTSLEEAKKFAE 1065 (1435)
T ss_pred hhccCCceEEEecCcCcc--hhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhh--hccHHHHHHHHH
Confidence 99999888877653 332 3566788899999999999999999999999999999999999987 999999999999
Q ss_pred HhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeec
Q psy15251 156 RIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDC 235 (720)
Q Consensus 156 ~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~ 235 (720)
+.||||++.|++--+|.-|-++.+.+||+..++.+..-++ +.++++-+||++.+|++++.++.. |+++...--+
T Consensus 1066 ~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~----dhPVVisKfie~AkEidvDAVa~~-G~~~~haiSE- 1139 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSP----DHPVVISKFIEGAKEIDVDAVASD-GKVLVHAISE- 1139 (1435)
T ss_pred hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCC----CCCEEhHHhhcccceechhhhccC-CeEEEEehhh-
Confidence 9999999999999999999999999999999998876544 789999999999999999998853 6665432100
Q ss_pred ccccc--c-eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCccccccccccc
Q psy15251 236 SVQRR--H-QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITG 312 (720)
Q Consensus 236 s~~r~--~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tG 312 (720)
.+..- | ..-.-..|...++++..+++.+.+.++++++.+.|+++++|+.. ++++.+||+|-|.+.+.|+.....|
T Consensus 1140 HvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k--~n~lkVIECN~RaSRSFPFvSKtlg 1217 (1435)
T KOG0370|consen 1140 HVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK--DNELKVIECNVRASRSFPFVSKTLG 1217 (1435)
T ss_pred hhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec--CCeEEEEEeeeeeeccccceehhcC
Confidence 11111 1 11222357778999999999999999999999999999999998 5689999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCC
Q psy15251 313 VDLVQWQLMVASGQELPLK 331 (720)
Q Consensus 313 vdl~~~~l~~a~G~~l~~~ 331 (720)
+|+++...+..+|.+++..
T Consensus 1218 vdfi~~At~~i~g~~~~~~ 1236 (1435)
T KOG0370|consen 1218 VDFIALATRAIMGVPVPPD 1236 (1435)
T ss_pred chHHHHHHHHHhCCCCCCc
Confidence 9999999999999887754
No 64
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.93 E-value=3.5e-24 Score=228.04 Aligned_cols=277 Identities=17% Similarity=0.164 Sum_probs=199.7
Q ss_pred EEEEEcCc---HHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 10 SILIANRG---EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 10 ~iLI~~~G---~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|++|+.+. -.+.+++++++++|++++.++.......... ..+..+. .. .+..++|++++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~-~~~~~~~----------~~-------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINP-AASSIHY----------KG-------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCC-CcccEEE----------CC-------cccCCCCEEEE
Confidence 46777743 3478999999999999998853321000000 0111111 11 01236899998
Q ss_pred CCCCC-ccc-HHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh-CCcEEE
Q psy15251 87 GYGFL-SEN-AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLMI 163 (720)
Q Consensus 87 g~g~l-sE~-~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i-g~Pvvv 163 (720)
..+.. ... ...+..++..| +++++++.++..+.||..++++++++|||+|++.. +.+.+++.++++++ +||+|+
T Consensus 64 ~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~--~~~~~~~~~~~~~~~~~P~Vv 140 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGI--AHSPDDTSDLIDMVGGAPLVV 140 (300)
T ss_pred cCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEE--eCCHHHHHHHHHHhCCCCEEE
Confidence 65421 111 23366788899 56689999999999999999999999999999987 67888888888877 799999
Q ss_pred eecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEecccc--CCceEEEEEEEcccccEEEEEeeeccccccc
Q psy15251 164 KAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ--SPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241 (720)
Q Consensus 164 Kp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~--g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~ 241 (720)
||..|++|+|++++++.+++..+++.+... +..+++|+||+ .++++.+.++++ +++....|..+.....
T Consensus 141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g~d~rv~vig~---~~~~~~~r~~~~~~~~ 211 (300)
T PRK10446 141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVGD---EVVAAIERRAKEGDFR 211 (300)
T ss_pred EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCCceEEEEEECC---EEEEEEEEecCCCchh
Confidence 999999999999999999988887765421 46899999995 368898888753 5666666643221111
Q ss_pred eeEE---EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHH
Q psy15251 242 QKII---EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQW 318 (720)
Q Consensus 242 ~k~~---e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~ 318 (720)
.+.. ...|. ++.+++.+.|.++++++|+. .+.+||+++ ++| +||+|+|++++.. -++.++|+|+.+.
T Consensus 212 ~n~~~g~~~~~~-----~l~~~~~~~a~~a~~alg~~-~~gvD~~~~-~~g-~~vlEvN~~pg~~--~~~~~~g~~~~~~ 281 (300)
T PRK10446 212 SNLHRGGAASVA-----SITPQEREIAIKAARTMALD-VAGVDILRA-NRG-PLVMEVNASPGLE--GIEKTTGIDIAGK 281 (300)
T ss_pred heeccCCeeccC-----CCCHHHHHHHHHHHHHhCCC-EEEEEEEEc-CCC-cEEEEEECCCChh--hhHHHHCcCHHHH
Confidence 1111 11122 23466889999999999996 899999999 667 9999999999753 3567789999999
Q ss_pred HHHHHcCC
Q psy15251 319 QLMVASGQ 326 (720)
Q Consensus 319 ~l~~a~G~ 326 (720)
+++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 98877554
No 65
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.93 E-value=2.3e-24 Score=226.72 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=190.7
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCcccH
Q psy15251 16 RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENA 95 (720)
Q Consensus 16 ~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~lsE~~ 95 (720)
.+....+++++++++|+++..+..+. ..+.+.. .. .....+|+|++.........
T Consensus 9 ~~~~~~~l~~a~~~~g~~~~~~~~~~-----------~~~~~~~-------~~-------~~~~~~d~v~~r~~~~~~~~ 63 (277)
T TIGR00768 9 IRLDEKMLKEAAEELGIDYKVVTPPA-----------IPLTFNE-------GP-------RELAELDVVIVRIVSMFRGL 63 (277)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEhHH-----------cEEeccC-------CC-------ccCCCCCEEEEechhHhhHH
Confidence 45567789999999999988884321 1111100 00 01234677776552112234
Q ss_pred HHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceE
Q psy15251 96 EFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMR 175 (720)
Q Consensus 96 ~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~ 175 (720)
.+++.++..|+++++ +++++..+.||..++++++++|+|+|++.. +.+.+++.++.++++||+|+||..|+||+|+.
T Consensus 64 ~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~--~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~ 140 (277)
T TIGR00768 64 AVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGL--AGSPEEALKLIEEIGFPVVLKPVFGSWGRLVS 140 (277)
T ss_pred HHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEE--eCCHHHHHHHHHhcCCCEEEEECcCCCCCceE
Confidence 677888999999874 589999999999999999999999999987 78899999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeee-ccccccc-eeEEEEcCCCCC
Q psy15251 176 IVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERD-CSVQRRH-QKIIEEAPAPGI 253 (720)
Q Consensus 176 ~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~-~s~~r~~-~k~~e~~Pa~~l 253 (720)
++++.+++.++++....... ....+++|+||++....++.++..+ |+++..+.|. ..-.+.+ ..-....|. .+
T Consensus 141 ~i~~~~~l~~~~~~~~~~~~---~~~~~lvQe~I~~~~~~~~rv~v~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~-~l 215 (277)
T TIGR00768 141 LARDKQAAETLLEHFEQLNG---PQNLFYVQEYIKKPGGRDIRVFVVG-DEVIAAIYRITSGHWRTNLARGGKAEPC-PL 215 (277)
T ss_pred EEcCHHHHHHHHHHHHHhcc---cCCcEEEEeeecCCCCceEEEEEEC-CEEEEEEEEcCCCchhhhhhcCCeeeec-CC
Confidence 99999999988776543211 1257999999996432444444433 4666555442 0000000 000011122 23
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHH
Q psy15251 254 SSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 254 ~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~ 322 (720)
+ +++.+.+.++++++|+ |.+.+||+++ ++|++||+|+|+|++.. ..+..+|+|+.+++++.
T Consensus 216 ~----~~~~~~a~~~~~~l~~-~~~~vD~~~~-~~g~~~viEiN~~p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 216 T----EEIEELAIKAAKALGL-DVVGIDLLES-EDRGLLVNEVNPNPEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred C----HHHHHHHHHHHHHhCC-CeEEEEEEEc-CCCCeEEEEEcCCcchh--hhHHHHCCCHHHHHHhh
Confidence 3 5788899999999999 8899999999 77889999999999743 34667899999998864
No 66
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.92 E-value=1.8e-24 Score=213.00 Aligned_cols=177 Identities=27% Similarity=0.410 Sum_probs=131.6
Q ss_pred HhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhc
Q psy15251 118 NMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSA 197 (720)
Q Consensus 118 ~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~ 197 (720)
++.||..++++++++|||+|++.. +.+.+++.+++..++||+|+||..|+||+|++++++.+|+.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~--~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRI--VDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEE--ECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEE--ECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 478999999999999999999988 8999999999999999999999999999999999999999999998876432
Q ss_pred CCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccccc-c----eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q psy15251 198 FNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRR-H----QKIIEEAPAPGISSEFRSRLGSTGVQVARAV 272 (720)
Q Consensus 198 f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~-~----~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al 272 (720)
.....+++|+||+| .++++.++.+ +|+++.+...+...... + .......+ .+....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVP---SEPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecc---cccccHHHHHHHHHHHHHHc
Confidence 12468999999995 9999999987 67876654333222211 0 11112222 23334599999999999999
Q ss_pred CC-cceeEEEEEEeCCCCcEEEEEecCCCCccc
Q psy15251 273 RY-HNAGTVEFIMDPSSGEFYFMEMNTRLQVEH 304 (720)
Q Consensus 273 g~-~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~ 304 (720)
|| +|++++||+++ ++|++||||+|||+++.+
T Consensus 152 g~~~G~~~id~~~~-~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVD-PDGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEE-TCCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEe-CCCCEEEEEECccCCCCC
Confidence 99 99999999999 679899999999998754
No 67
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.92 E-value=3.6e-23 Score=221.55 Aligned_cols=266 Identities=16% Similarity=0.230 Sum_probs=188.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCC-CCCcccccccEEEEeCCCCCcccc---cCHHHHHHHHHHcCCCEEE
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDID-ADALHVKMADEAYRLEGKSSLDTY---LNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d-~~~~~~~~aD~~~~i~~~~~~~~~---~~~~~i~~~a~~~~~daI~ 85 (720)
+|..+ ++..++.|++.|++.|++++++....+ ..-..+.++|+.+.+. +| .|.+...++++. ++ .++
T Consensus 20 ~i~~~-~shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~------~~~di~~~~~~~~l~~~-~~-iiI 90 (358)
T PRK13278 20 TIATI-GSHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVD------DFSDILNEAVQEKLREM-NA-ILI 90 (358)
T ss_pred eEEEE-ecccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEc------chhhhcCHHHHHHHhhc-Cc-EEE
Confidence 44444 346799999999999999999977654 2234566789988863 34 333333334433 33 255
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEee
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp 165 (720)
|. |..........++ +++++++| +.++++...||..+|++|+++|||+|+++ .+.++ ++||+|+||
T Consensus 91 p~-gs~v~y~~~d~l~-~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~----~~~~~-------i~~PvIVKp 156 (358)
T PRK13278 91 PH-GSFVAYLGLENVE-KFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKY----ESPED-------IDRPVIVKL 156 (358)
T ss_pred eC-CCcceeecHHHHH-HCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEe----CCHHH-------cCCCEEEEe
Confidence 55 4333444444454 78888665 88899999999999999999999999963 34443 579999999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcc-cccEEEEE--eeecc----cc
Q psy15251 166 VRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR-YGNYVYLY--ERDCS----VQ 238 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~-~G~~v~~~--~r~~s----~~ 238 (720)
..|.||+|+++|++.+|+.++++.+.....-.. .+.++|||||.| .+++++++... +|++-.+. .|--+ ..
T Consensus 157 ~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~ 234 (358)
T PRK13278 157 PGAKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLV 234 (358)
T ss_pred CCCCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeeccccee
Confidence 999999999999999999999988754211111 478999999995 79999999742 34433321 11111 00
Q ss_pred c---c-------ce--eEEEEcCCCCCCHHHHHHHHHHHHHHHHH----c--CCcceeEEEEEEeCCCCcEEEEEecCCC
Q psy15251 239 R---R-------HQ--KIIEEAPAPGISSEFRSRLGSTGVQVARA----V--RYHNAGTVEFIMDPSSGEFYFMEMNTRL 300 (720)
Q Consensus 239 r---~-------~~--k~~e~~Pa~~l~~~~~~~l~~~a~~i~~a----l--g~~G~~~vEf~~~~~~g~~~~iEiNpR~ 300 (720)
| . +. -.....|+ .+.+++.+++.+.+.+++++ + |..|++++|++++ +++.+|++|+|+|+
T Consensus 235 r~p~~~~~~~~~~p~~v~~Gn~P~-~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~-~d~~~~V~Eis~R~ 312 (358)
T PRK13278 235 RIPAKDQLELGIDPTYVVVGNIPV-VLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVT-DNLEIVVFEISARI 312 (358)
T ss_pred eccchhhhhcccCCceeEecceec-cchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEc-CCCCEEEEEEeCcc
Confidence 0 0 00 01122355 57788889999999999988 4 5699999999999 78899999999999
Q ss_pred Cc
Q psy15251 301 QV 302 (720)
Q Consensus 301 ~~ 302 (720)
++
T Consensus 313 ~g 314 (358)
T PRK13278 313 VA 314 (358)
T ss_pred cC
Confidence 53
No 68
>KOG0237|consensus
Probab=99.92 E-value=1.2e-22 Score=217.40 Aligned_cols=390 Identities=17% Similarity=0.194 Sum_probs=268.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 9 DSILIANRGEIACRIMRTAKKM-GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 9 ~~iLI~~~G~~a~~iira~~~~-G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
-++||+|+|..-..++-.+++. -+.-|.+.+-....+ . -|.. .++. -.-+..|.+++.++|+++++..|+||
T Consensus 3 ~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a--~--~~~~-~~~~--~dI~~~d~~ala~f~~e~~I~lVvvG 75 (788)
T KOG0237|consen 3 VNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTA--S--GDAS-KVPN--LDISVADFEALASFCKEHNINLVVVG 75 (788)
T ss_pred eEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCcc--c--Cccc-cCcc--cccChhhHHHHHHHHHHcceeEEEEC
Confidence 4899999998777777666654 233344422111111 1 1110 0110 01134688999999999999999999
Q ss_pred CC-CCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCC-cEEEee
Q psy15251 88 YG-FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGY-PLMIKA 165 (720)
Q Consensus 88 ~g-~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~-PvvvKp 165 (720)
.+ .|+ ..++..+.+.||+.+||+.++..+-.+|..+|.+|.++|||+..+.. .++.+++..+.+..+| ++|||+
T Consensus 76 PE~PL~--~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~--ft~~e~a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237|consen 76 PELPLV--AGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKT--FTDPEEAKSFIQSATDKALVIKA 151 (788)
T ss_pred Cchhhh--hhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeee--eCCHHHHHHHHHhCCCcceEEee
Confidence 86 333 46788899999999999999999999999999999999999999887 8999999999999995 599999
Q ss_pred cCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccccccee
Q psy15251 166 VRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFN--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQK 243 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k 243 (720)
..-+.|+||.+..+.+|.-++++++..... || +..++|||+++ +.|+++-.|.|++ .+..+ .....|.+
T Consensus 152 dGLAAGKGViv~~~~~EA~eAv~sIl~~~~--fg~AG~tvViEE~LE-GeEvS~laftDG~-s~~~m-----p~aQDHKR 222 (788)
T KOG0237|consen 152 DGLAAGKGVIVAKSKEEAFEAVDSILVKKV--FGSAGKTVVIEELLE-GEEVSFLAFTDGY-SVRPL-----PPAQDHKR 222 (788)
T ss_pred cccccCCceEeeccHHHHHHHHHHHHhhhh--hccccceEehhhhcC-cceEEEEEEecCc-ccccC-----Ccccchhh
Confidence 999999999999999999999999876543 44 47999999999 5899999999964 33222 23334444
Q ss_pred EEE------------EcCCCCCCHHHHHHHHH----HHHHHHHH--cCCcceeEEEEEEeCCCCcEEEEEecCCCC-ccc
Q psy15251 244 IIE------------EAPAPGISSEFRSRLGS----TGVQVARA--VRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ-VEH 304 (720)
Q Consensus 244 ~~e------------~~Pa~~l~~~~~~~l~~----~a~~i~~a--lg~~G~~~vEf~~~~~~g~~~~iEiNpR~~-~~~ 304 (720)
+.+ .+|+|..++++.+.+.+ -+.+-++. ..|.|....-+|++ ++| |.++|.|.|++ .|.
T Consensus 223 l~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~-k~~-P~vLEfN~RFGDPEt 300 (788)
T KOG0237|consen 223 LGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLT-KDG-PKVLEFNVRFGDPET 300 (788)
T ss_pred hcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEe-cCC-ccEEEEecccCCchh
Confidence 433 27888888776555444 44444444 56689999999999 777 99999999998 332
Q ss_pred ccccccccCcHHHHHHHHHcCCC--CCCCCCCCCcCeeEEEEEEeecCCCCCCCCCCcceeeeeCCCCCCcEEEeecccC
Q psy15251 305 PVSEMITGVDLVQWQLMVASGQE--LPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIE 382 (720)
Q Consensus 305 ~~~e~~tGvdl~~~~l~~a~G~~--l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~p~~~~~vr~d~~v~~ 382 (720)
.+.-...--||++.++..+.|+- +++.-.....-+..+.+--||++..+| ..|..+..+. .++.|+ +.+
T Consensus 301 Qv~l~lLesDL~evi~a~~~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG-----~~It~~~~~~-~~~~rV---FHA 371 (788)
T KOG0237|consen 301 QVLLPLLESDLAEVILACCNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKG-----SIITGLPEAD-RPGTRV---FHA 371 (788)
T ss_pred hhhHHHHHhHHHHHHHHHhhCCccccCccccccceEEEEEecCCCCCCCcCC-----cccccCcccC-CCcceE---Eec
Confidence 22222224599999998888862 121100101112222333455554443 1233332332 245565 233
Q ss_pred CCeeC----CCCCCceEEEEEEcCCHHHHHHHHHHHhhcceEec--cccCHHH
Q psy15251 383 GDEVS----VHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG--LDTNINF 429 (720)
Q Consensus 383 G~~v~----~~~d~~~a~vi~~g~~~~ea~~~~~~al~~~~i~G--~~tn~~~ 429 (720)
|..+- -....++-.+.+.+++.++|.++++.+++.+++.| .+++|.|
T Consensus 372 GTs~~ss~vvTNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ 424 (788)
T KOG0237|consen 372 GTSLDSSNVVTNGGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAW 424 (788)
T ss_pred cccccccceEecCceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhh
Confidence 33220 01234457788899999999999999999999998 4555543
No 69
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.92 E-value=6.1e-23 Score=216.50 Aligned_cols=265 Identities=20% Similarity=0.211 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCcccHHH
Q psy15251 18 EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEF 97 (720)
Q Consensus 18 ~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~lsE~~~~ 97 (720)
.--..++.+++++|+++..++.+.. .+.... .. ....++|++++....-......
T Consensus 10 ~~~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~-------~~-------~~~~~~d~v~~r~~~~~~~~~~ 64 (280)
T TIGR02144 10 PDEKMLIEELEKLGLPYRKIYVPAL-----------PLPFGE-------RP-------KELEDVDVAIIRCVSQSRALYS 64 (280)
T ss_pred HHHHHHHHHHHHcCCceEEEEhhhe-----------EEEcCC-------Cc-------cccCCCCEEEEcCcchhhHHHH
Confidence 3367889999999999988843311 111100 00 0112467776642111112345
Q ss_pred HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEe
Q psy15251 98 ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIV 177 (720)
Q Consensus 98 a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v 177 (720)
+..++..|+++++ ++++++.+.||..++++|+++|||+|++.. +.+.+++.++...++||+|+||..|+||+|+.++
T Consensus 65 ~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~--~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v 141 (280)
T TIGR02144 65 ARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYL--AFDREAALKLAEALGYPVVLKPVIGSWGRLVALI 141 (280)
T ss_pred HHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEe--eCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEE
Confidence 6778899999985 679999999999999999999999999987 7788888888889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccC-CceEEEEEEEcccccEEEEEeeeccccccceeE-EEEcCCCCCCH
Q psy15251 178 RDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQS-PRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKI-IEEAPAPGISS 255 (720)
Q Consensus 178 ~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g-~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~-~e~~Pa~~l~~ 255 (720)
++.+++.++++..... ....+..+++|+||++ ++++++.++++ +.++...|...-.+.+... ....|. .++
T Consensus 142 ~~~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~-~~~- 214 (280)
T TIGR02144 142 RDKDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPC-PLD- 214 (280)
T ss_pred CCHHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceecc-CCC-
Confidence 9999998877543211 1112357999999986 57777777643 4444332221100111000 112233 233
Q ss_pred HHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHHc
Q psy15251 256 EFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 256 ~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~ 324 (720)
+++.+.+.++++++|+ |.+++||+++ ++|++||+|+|+|++... ++..+|+|+.+..++.+.
T Consensus 215 ---~~~~~~a~~~~~~lg~-~~~~vD~~~~-~~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 215 ---EEVEELAVKAAEAVGG-GVVAIDIFES-KERGLLVNEVNHVPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred ---HHHHHHHHHHHHHhCC-CeEEEEEEEc-CCCCEEEEEEeCCcchhh--hhHhhCCCHHHHHHHHHH
Confidence 4678899999999997 7899999999 677899999999998543 355789999999998764
No 70
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.91 E-value=1.1e-22 Score=213.89 Aligned_cols=295 Identities=15% Similarity=0.164 Sum_probs=212.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCC--CcccccccEEEEeCCCCCcccccCH--HHHHHHHHHcCCCEEE
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDAD--ALHVKMADEAYRLEGKSSLDTYLNQ--AKILDIAVRSQCQAIH 85 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~--~~~~~~aD~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~daI~ 85 (720)
+|..+| +..|+.|.+-||+.|++|++++...... ..+...+|+.+.+. +|.++ +.+.+-.++.+ +|+
T Consensus 19 ~i~t~~-SHsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~------~f~~~~~~~~~~~l~~~n--~i~ 89 (366)
T PRK13277 19 KIGVLA-SHSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLD------KFKDILSEKVQDELREEN--AIF 89 (366)
T ss_pred EEEEEe-cchHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEec------chhhhhhHHHHHHHHHCC--eEE
Confidence 455554 4679999999999999999997554322 22224689999874 45542 35666655554 355
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHh--cCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEE
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNM--GIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMI 163 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~--~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~Pvvv 163 (720)
...|.+.+....-....+..+|++|+. ..++.- +||..+.++|+++|||+|+.+. ++ +++.+||||
T Consensus 90 iPh~sf~~y~g~~~ie~~~~vp~fGnr-~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~----~p-------~eId~PVIV 157 (366)
T PRK13277 90 VPNRSFAVYVGYDAIENEFKVPIFGNR-YLLRWEERTGEKNYYWLLEKAGIPYPKLFK----DP-------EEIDRPVIV 157 (366)
T ss_pred ecCCCeEEEecHHHHhhcCCCCcccCH-HHhhhhhccCHHHHHHHHHHcCCCCceeec----Cc-------cccCccEEE
Confidence 445666666555555557899999864 444433 7888888899999999999765 32 356899999
Q ss_pred eecCCCC--CcceEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeccccCCceEEEEEEEcc-cccEEEEE--eeecc-
Q psy15251 164 KAVRGGG--GKGMRIVRDSANFLAQLRSAQRESQS-AFNDSKVLLEKYIQSPRHIEVQIIGDR-YGNYVYLY--ERDCS- 236 (720)
Q Consensus 164 Kp~~g~G--g~Gv~~v~~~~el~~~~~~~~~~~~~-~f~~~~~lvEeyI~g~~~~~v~v~~d~-~G~~v~~~--~r~~s- 236 (720)
||..|.| |+|++++.|.+|+.....+......- .-+-.+++|||||.| .++.++++.+. +|++..++ .|--+
T Consensus 158 Kp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn 236 (366)
T PRK13277 158 KLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSN 236 (366)
T ss_pred EECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccc
Confidence 9999999 99999999999998886665421000 001145679999994 89999999883 67554432 21111
Q ss_pred --------cccc-----ce--eEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC------CcceeEEEEEEeCCCCcEEEEE
Q psy15251 237 --------VQRR-----HQ--KIIEEAPAPGISSEFRSRLGSTGVQVARAVR------YHNAGTVEFIMDPSSGEFYFME 295 (720)
Q Consensus 237 --------~~r~-----~~--k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg------~~G~~~vEf~~~~~~g~~~~iE 295 (720)
...+ +. -.....|. .+.+.+.+++.+.+.+++++++ +.|++++|++++ +++++|++|
T Consensus 237 ~dg~~r~pa~~ql~~~~~p~~vv~G~~p~-t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~-~d~~~~V~E 314 (366)
T PRK13277 237 LDGFVRLPAPQQLKLNEEPRYIEVGHEPA-TIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVT-PDLDFVVYD 314 (366)
T ss_pred cccccccChhhhhhcccCCceEEEcCccc-cchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEc-CCCcEEEEE
Confidence 0000 00 11113565 5777899999999999999976 689999999999 789999999
Q ss_pred ecCCCCcccccccccccCcHHHHHHH--HHcCCCCC
Q psy15251 296 MNTRLQVEHPVSEMITGVDLVQWQLM--VASGQELP 329 (720)
Q Consensus 296 iNpR~~~~~~~~e~~tGvdl~~~~l~--~a~G~~l~ 329 (720)
||||+++..++.-.+ |.|+..+++. +.+|++++
T Consensus 315 InpR~gGGtnl~~~a-Gs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 315 VAPRIGGGTNVYMGV-GSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EcCCcCCCccceeec-CCCcHHHHhcCccccCCcch
Confidence 999999998877444 9999999999 88998876
No 71
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.91 E-value=2.9e-24 Score=191.76 Aligned_cols=110 Identities=55% Similarity=0.837 Sum_probs=104.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|+|||||+|||+++++++|+||++|+++|++++++|..+.|.++||+.|.+++.+..++|+|.+.|++++++.++|++||
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 68999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHCCCeEeCCCHHHH
Q psy15251 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAI 116 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i 116 (720)
||||++|++.|++.|++.|+.|+||++++|
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 999999999999999999999999999875
No 72
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.88 E-value=1.3e-22 Score=231.09 Aligned_cols=269 Identities=20% Similarity=0.275 Sum_probs=194.9
Q ss_pred HHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCH--HHHHHHHHHcCCCEEEeCCCCCcccHHH------
Q psy15251 26 TAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQ--AKILDIAVRSQCQAIHPGYGFLSENAEF------ 97 (720)
Q Consensus 26 a~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~daI~pg~g~lsE~~~~------ 97 (720)
-.+++|++.+.+|+..+.++. |+.++++|.+..+ ++. +.|+++|++.++++++.. +|+..|
T Consensus 206 fY~klGf~~~~~y~~~d~~~~-----~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g~ 274 (547)
T TIGR03103 206 LYEKLGFRRIPVFALKRKNAI-----NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLGG 274 (547)
T ss_pred HHHHCCCEEeeEEEEeccCCc-----CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCCc
Confidence 345889999988888877775 8999998766654 777 899999999999999954 232222
Q ss_pred -HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEE
Q psy15251 98 -ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI 176 (720)
Q Consensus 98 -a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~ 176 (720)
+..|... +. .-+++.+++.+.||..++++|+++|||+|++.. +.+.+++.++++++| |+||||..|++|+||++
T Consensus 275 ~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~--~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v 349 (547)
T TIGR03103 275 RSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQL--AGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISV 349 (547)
T ss_pred eEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEE--ECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEE
Confidence 1111111 11 126889999999999999999999999999987 788999999999998 69999999999999997
Q ss_pred -eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEE----------------EEEcccccEEEEEeeeccccc
Q psy15251 177 -VRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQ----------------IIGDRYGNYVYLYERDCSVQR 239 (720)
Q Consensus 177 -v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~----------------v~~d~~G~~v~~~~r~~s~~r 239 (720)
+++.+++.++++.+.+. ...+|+|+||+| +++.+- +++|+++++..++++...-..
T Consensus 350 ~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~G-~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~ 422 (547)
T TIGR03103 350 DVRTPDDLEAAIAKARQF------CDRVLLERYVPG-EDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRA 422 (547)
T ss_pred ecCCHHHHHHHHHHHHhc------CCcEEEEEeccC-CeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCcc
Confidence 99999999999988654 468999999995 666544 445544444443332110000
Q ss_pred c-------------------------------ceeEE--------EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEE
Q psy15251 240 R-------------------------------HQKII--------EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTV 280 (720)
Q Consensus 240 ~-------------------------------~~k~~--------e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 280 (720)
+ .+.+. .++.+-.+++.+.+++.+.|.++++++|+ ..+.|
T Consensus 423 ~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl-~~~Gv 501 (547)
T TIGR03103 423 AATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI-PVVGI 501 (547)
T ss_pred CCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCC-CeEEE
Confidence 0 00000 01111235567889999999999999999 68899
Q ss_pred EEEEeCCC-CcEEEEEecCCCCcc-cccccccccCcHHHHHHHHHc
Q psy15251 281 EFIMDPSS-GEFYFMEMNTRLQVE-HPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 281 Ef~~~~~~-g~~~~iEiNpR~~~~-~~~~e~~tGvdl~~~~l~~a~ 324 (720)
|++++..+ ..+.|||+|.|++-. |. .-|..+..++...
T Consensus 502 D~i~~~~~~p~~~iiEvN~~Pgl~~h~------~~~~~~~~~d~lf 541 (547)
T TIGR03103 502 DFLVPDVTGPDYVIIEANERPGLANHE------PQPTAERFIDLLF 541 (547)
T ss_pred EEEeccCCCCCeEEEEecCCccccccC------CCchHHHHHHHhC
Confidence 99997212 246999999999844 51 3456666666553
No 73
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.87 E-value=3.1e-21 Score=186.21 Aligned_cols=163 Identities=25% Similarity=0.335 Sum_probs=135.4
Q ss_pred HHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeec-CCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEec
Q psy15251 129 MIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV-RGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207 (720)
Q Consensus 129 l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~-~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEe 207 (720)
|+++|||+||+.. +.+.+++.++++++|||+|+|+. .|..|+|.+++++.+|+..+++.+ +..++++|+
T Consensus 1 l~~~gip~~~~~~--i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPYAT--IDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EEEE--ESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCeEE--ECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 5789999999998 99999999999999999999955 555899999999999999988875 378999999
Q ss_pred cccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC
Q psy15251 208 YIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPS 287 (720)
Q Consensus 208 yI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~ 287 (720)
||+..+|+++.+..+.+|++.++... ..+++++.-....+|+ .+++++.+++.+.+.+++++|+|.|.+.|||+++ +
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~yp~~-en~~~~~il~~s~~Pa-~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~-~ 147 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRFYPPV-ENVHRDGILHESIAPA-RISDEVEEEAKEIARKIAEALDYVGVLAVEFFVT-K 147 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEEEEEE-EEEEETTEEEEEEESC-SS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEE-T
T ss_pred ccCCcEEEEEEEEEcCCCCEEEEcCc-eEEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEe-c
Confidence 99999999999999999987664322 3566666666677898 5999999999999999999999999999999999 8
Q ss_pred CCc-EEEEEecCCCCccc
Q psy15251 288 SGE-FYFMEMNTRLQVEH 304 (720)
Q Consensus 288 ~g~-~~~iEiNpR~~~~~ 304 (720)
+|+ +|+-|+.||+..+.
T Consensus 148 ~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 148 DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp TSTEEEEEEEESS--GGG
T ss_pred CCCEEEEEeccCCccCcc
Confidence 897 99999999998663
No 74
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=2.5e-20 Score=197.06 Aligned_cols=282 Identities=22% Similarity=0.314 Sum_probs=211.4
Q ss_pred CEEEEEcCcHH---------HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHc
Q psy15251 9 DSILIANRGEI---------ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRS 79 (720)
Q Consensus 9 ~~iLI~~~G~~---------a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~ 79 (720)
.++.|+-+|.. +..++++++..|+.+..++...+..... ++... . ....
T Consensus 3 ~~vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~-----~~~~ 60 (317)
T COG1181 3 MKVAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWML----DKEVT-------------K-----RVLQ 60 (317)
T ss_pred eEEEEeeCCccccceEEEecHHHHHHHHhhcCceeEEEeccccceEEe----ccccc-------------h-----hhcc
Confidence 35666655533 7889999999999988886655333221 11110 0 2233
Q ss_pred CCCEEEeC-CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCC--CHHHHHHHHHH
Q psy15251 80 QCQAIHPG-YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQ--NEEILMEQAER 156 (720)
Q Consensus 80 ~~daI~pg-~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~--s~~e~~~~~~~ 156 (720)
++|.++|. .|+..|+......++..|+|++|++..+.....||..+|.+++..|+|++++...... +...+.+..+.
T Consensus 61 ~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~ 140 (317)
T COG1181 61 KADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEG 140 (317)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcc
Confidence 46677775 4777899999999999999999999999999999999999999999999998762222 23334566678
Q ss_pred hCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEE-------
Q psy15251 157 IGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY------- 229 (720)
Q Consensus 157 ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~------- 229 (720)
++||++|||...+++.|+.++++.+|+..+++.+... +.++++|+|+. +++++|.++.+.. ....
T Consensus 141 l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~eI~ 212 (317)
T COG1181 141 LGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY-EEQALPLGEIP 212 (317)
T ss_pred cCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc-cceecCceEEe
Confidence 9999999999999999999999999999988887764 78999999999 7999999998744 1211
Q ss_pred -----EEeeeccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCC-cc
Q psy15251 230 -----LYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ-VE 303 (720)
Q Consensus 230 -----~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~-~~ 303 (720)
++.++.++.... ......|+ .++++..+++.+.|.++.+++|..|.+.+||++++.+|++|++|+|+.+| ..
T Consensus 213 ~~~~~fydye~Ky~~~g-g~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~ 290 (317)
T COG1181 213 PKGEEFYDYEAKYLSTG-GAQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTA 290 (317)
T ss_pred cCCCeEEeeeccccCCC-CceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcc
Confidence 111222222210 12335676 69999999999999999999999999999999993268899999999999 33
Q ss_pred ---cccccccccCcHHHHHHHH
Q psy15251 304 ---HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 304 ---~~~~e~~tGvdl~~~~l~~ 322 (720)
.|..-...|+++......+
T Consensus 291 ~sl~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 291 MSLFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred cccchhhHHHcCCCHHHHHHHH
Confidence 2333334477766655543
No 75
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.86 E-value=1e-20 Score=188.96 Aligned_cols=186 Identities=19% Similarity=0.357 Sum_probs=136.7
Q ss_pred HHHHCCCCCCCcccCCCCCHHH--HHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Q psy15251 128 IMIKAEVPVIPGYHGEDQNEEI--LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLL 205 (720)
Q Consensus 128 ~l~~~Gvp~p~~~~~~~~s~~e--~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lv 205 (720)
+++.+|||+|++....-.+... +.+....++||++|||..+++|.||.+|++.+||..+++.+.+ + +..+||
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~-----~-~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK-----Y-DDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT-----T-HSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh-----h-cceEEE
Confidence 5789999999998732223322 3456788999999999999999999999999999999988763 2 579999
Q ss_pred eccccCCceEEEEEEEcccccEEEEEeeecc-----cccc----ceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Q psy15251 206 EKYIQSPRHIEVQIIGDRYGNYVYLYERDCS-----VQRR----HQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHN 276 (720)
Q Consensus 206 EeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s-----~~r~----~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G 276 (720)
|+||+ |+|++|.+++++...+..+.+.... +... ........|+ .+++++.++|.+.|.++.++||++|
T Consensus 75 EefI~-G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa-~l~~~~~~~i~~~a~~a~~~lg~~~ 152 (203)
T PF07478_consen 75 EEFIS-GREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPA-DLSEELQEKIKEIAKKAFKALGCRG 152 (203)
T ss_dssp EE--S-SEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS--SS-HHHHHHHHHHHHHHHHHTTTCS
T ss_pred Eeeec-ccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99997 6999999999876555555443221 1111 1345667787 6999999999999999999999999
Q ss_pred eeEEEEEEeCCCCcEEEEEecCCCCcc----cccccccccCcHHHHHHHH
Q psy15251 277 AGTVEFIMDPSSGEFYFMEMNTRLQVE----HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 277 ~~~vEf~~~~~~g~~~~iEiNpR~~~~----~~~~e~~tGvdl~~~~l~~ 322 (720)
.+.+||+++ ++|++||+|+|+-+|-+ .|..-...|+++.+..-++
T Consensus 153 ~~RiD~rv~-~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVD-EDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEE-TTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEec-cCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 999999999 88999999999999833 2222224478777666544
No 76
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.86 E-value=2.5e-21 Score=227.37 Aligned_cols=256 Identities=22% Similarity=0.306 Sum_probs=195.4
Q ss_pred CCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE--------EEeCCCCCcccHHHHHHHHHCCCeEeCC
Q psy15251 40 DIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA--------IHPGYGFLSENAEFANAVEGNRLIFVGP 111 (720)
Q Consensus 40 ~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da--------I~pg~g~lsE~~~~a~~~~~~gl~~~Gp 111 (720)
+.+....+.+.+++.+.++| ....|+++|++.++++ ++||||+.++ .++..+.. ++
T Consensus 141 ~~~~~~~~~~~~~~~~~lgp--------st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~~ 204 (727)
T PRK14016 141 DLEAALARLRELDEDERLGP--------STAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--QT 204 (727)
T ss_pred CHHHHHHHHHHHHHhcccCC--------CHHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--CC
Confidence 56777788888999999886 3358999999999988 9999998764 34444444 78
Q ss_pred CHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEE-eCCHHHHHHHHHHH
Q psy15251 112 SSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI-VRDSANFLAQLRSA 190 (720)
Q Consensus 112 ~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~-v~~~~el~~~~~~~ 190 (720)
+..+++.++||..+|++|+++|||+|++.. +.+.+++.++++++|||+|+||..|++|+||++ +++.+++.++++.+
T Consensus 205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~--v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 205 SAIAVDIACDKELTKRLLAAAGVPVPEGRV--VTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred cHHHHHHhCCHHHHHHHHHHCCcCCCCeeE--eCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 999999999999999999999999999987 889999999999999999999999999999998 99999999999887
Q ss_pred HHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccc-------------c------cc---c-------
Q psy15251 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSV-------------Q------RR---H------- 241 (720)
Q Consensus 191 ~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~-------------~------r~---~------- 241 (720)
... +..++||+||+| +++.+.++. |+++....|.-.. + |+ |
T Consensus 283 ~~~------~~~viVEe~I~G-~d~Rv~Vvg---g~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i 352 (727)
T PRK14016 283 SKE------SSDVIVERYIPG-KDHRLLVVG---GKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKI 352 (727)
T ss_pred HHh------CCeEEEEEecCC-ceEEEEEEC---CEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCccccc
Confidence 654 478999999995 777776553 3566655442110 0 00 0
Q ss_pred ------------------------eeEEE--------EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC--
Q psy15251 242 ------------------------QKIIE--------EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPS-- 287 (720)
Q Consensus 242 ------------------------~k~~e--------~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~-- 287 (720)
+++.- ++-+...++.+.+++.+.|.++++.+|+ +.+.||++.++-
T Consensus 353 ~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~ 431 (727)
T PRK14016 353 KLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISK 431 (727)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCccc
Confidence 00000 0011124566788899999999999999 889999998620
Q ss_pred ---CCcEEEEEecCCCCccc-ccccccccCcHHHHHHHHHc
Q psy15251 288 ---SGEFYFMEMNTRLQVEH-PVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 288 ---~g~~~~iEiNpR~~~~~-~~~e~~tGvdl~~~~l~~a~ 324 (720)
.....++|+|..++... .......+.|.....+....
T Consensus 432 p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~L~ 472 (727)
T PRK14016 432 PLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDMLF 472 (727)
T ss_pred ccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHHhc
Confidence 13479999999998542 21222346777777777653
No 77
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=186.12 Aligned_cols=293 Identities=13% Similarity=0.115 Sum_probs=211.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE--EEeC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA--IHPG 87 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da--I~pg 87 (720)
-++|+|+....+.++|++.+.-+.+.++..+...+. +++++.+... ++...+...+..+.++|.+++-.. ++++
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d~plPt-~Sr~vr~t~~---w~gphd~gaiafLrd~Aekhglkg~LLva~ 80 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSADGPLPT-YSRIVRVTTH---WNGPHDEGAIAFLRDFAEKHGLKGYLLVAC 80 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecCCCCcc-hhhhheeeec---cCCCCcccHHHHHHHHHhhcCcCceEEEec
Confidence 578999888899999999999988888865544444 6777776654 333445566788999999988553 2232
Q ss_pred CCCCcccH---HHHH-HHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEE
Q psy15251 88 YGFLSENA---EFAN-AVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMI 163 (720)
Q Consensus 88 ~g~lsE~~---~~a~-~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~Pvvv 163 (720)
-+. |-. ...+ +-+...++ -|+...++.+.+|-.+...+.+.|+|.|.++. ++|..+. .+.++-||+|+
T Consensus 81 GDg--ev~lvSq~reeLSa~f~v~--lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~--v~S~~d~--~~~el~FPvIL 152 (415)
T COG3919 81 GDG--EVLLVSQYREELSAFFEVP--LPDWALLRWLCEKPLLYNRAEELGLPYPKTYL--VNSEIDT--LVDELTFPVIL 152 (415)
T ss_pred CCc--eeeehHhhHHHHHHHhcCC--CCcHHHHHHHhhCcHHHHHHHHhCCCCcceEE--ecchhhh--hhhheeeeEEe
Confidence 211 211 1122 22333454 58999999999999999999999999999998 7765554 46788999999
Q ss_pred eecCCCC-----CcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCce--EEEEEEEcccccEEEEEeeecc
Q psy15251 164 KAVRGGG-----GKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRH--IEVQIIGDRYGNYVYLYERDCS 236 (720)
Q Consensus 164 Kp~~g~G-----g~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~--~~v~v~~d~~G~~v~~~~r~~s 236 (720)
||-.|++ -.....+.|.+|+..++..+..+ .+.++++||+||+||.| ++...+.|+ |+.+.- |.
T Consensus 153 KP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsyaAlw~~-g~pvae----ft 223 (415)
T COG3919 153 KPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSYAALWDK-GHPVAE----FT 223 (415)
T ss_pred cCCCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchHHHHHhC-CCchhh----hh
Confidence 9999884 35567788999999999888765 35799999999999876 444455554 455533 23
Q ss_pred ccccceeEEEEcC-CC--CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccC
Q psy15251 237 VQRRHQKIIEEAP-AP--GISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGV 313 (720)
Q Consensus 237 ~~r~~~k~~e~~P-a~--~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGv 313 (720)
-.|-.|.....+- +. .+. ..+++.++++++++.+++.|...+||++|++||.+.++|+|||++....+...+ |+
T Consensus 224 arr~rqyPvdfgytst~vevv--Dn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~taa-G~ 300 (415)
T COG3919 224 ARRLRQYPVDFGYTSTVVEVV--DNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVTAA-GY 300 (415)
T ss_pred cchhhcCCcccccccEEEEec--CcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEEecc-cc
Confidence 2222221111000 00 111 158899999999999999999999999999999999999999999777666554 88
Q ss_pred cHHHHHHHHHcCC
Q psy15251 314 DLVQWQLMVASGQ 326 (720)
Q Consensus 314 dl~~~~l~~a~G~ 326 (720)
||-..+.+...+.
T Consensus 301 nLg~~Lwa~~~~~ 313 (415)
T COG3919 301 NLGRYLWADRINN 313 (415)
T ss_pred cccceEEeeecCC
Confidence 8876666555543
No 78
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.83 E-value=1.5e-19 Score=176.05 Aligned_cols=169 Identities=25% Similarity=0.359 Sum_probs=130.8
Q ss_pred cCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcE-EEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcC
Q psy15251 120 GIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPL-MIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF 198 (720)
Q Consensus 120 ~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~Pv-vvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f 198 (720)
++|..+|++|+++|||++++.. +++.+++.+++++.++|+ ||||..-++|+||.++.+.+|..++++++..+ ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~--f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKV--FTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEE--ESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCeeE--ECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 3799999999999999999988 899999999999999999 99999999999999999999999999998753 346
Q ss_pred C--CCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccccccceeE------------EEEcCCCCCCHHHHHHHHH-
Q psy15251 199 N--DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKI------------IEEAPAPGISSEFRSRLGS- 263 (720)
Q Consensus 199 ~--~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~------------~e~~Pa~~l~~~~~~~l~~- 263 (720)
+ +..++||||+. |+|+++.++.|+. +++.+ ...+.|.++ ...+|.|.+++++.+++.+
T Consensus 77 g~~~~~vvIEE~l~-G~E~S~~a~~dG~-~~~~l-----p~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~ 149 (194)
T PF01071_consen 77 GDAGSKVVIEEFLE-GEEVSLFALTDGK-NFVPL-----PPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEE 149 (194)
T ss_dssp CCCGSSEEEEE----SEEEEEEEEEESS-EEEEE-----EEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHH
T ss_pred CCCCCcEEEEeccC-CeEEEEEEEEcCC-eEEEC-----cchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHH
Confidence 5 47999999999 5999999999975 34433 223333332 2346888889888777776
Q ss_pred HHHHHHHH-----cCCcceeEEEEEEeCCCCcEEEEEecCCCC
Q psy15251 264 TGVQVARA-----VRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301 (720)
Q Consensus 264 ~a~~i~~a-----lg~~G~~~vEf~~~~~~g~~~~iEiNpR~~ 301 (720)
....++++ +.|+|+..+.++++ ++| +++||.|.|+|
T Consensus 150 I~~pt~~~l~~eg~~y~GvLy~glMlt-~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 150 ILEPTLKGLKKEGIPYRGVLYAGLMLT-EDG-PKVLEFNVRFG 190 (194)
T ss_dssp THHHHHHHHHHTT---EEEEEEEEEEE-TTE-EEEEEEESSGS
T ss_pred HHHHHHHHHHhcCCCcceeeeeeeEEe-CCC-cEEEEEeCCCC
Confidence 44444444 37799999999999 777 99999999998
No 79
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.82 E-value=1.7e-20 Score=175.15 Aligned_cols=72 Identities=36% Similarity=0.574 Sum_probs=69.4
Q ss_pred CCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
+...|+|||+|++++++|++||+|++||+|++|||||||++|.||.+|+|++|++++||.|..||+|++|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999974
No 80
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.79 E-value=2.2e-19 Score=173.21 Aligned_cols=158 Identities=22% Similarity=0.327 Sum_probs=88.2
Q ss_pred hcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcC
Q psy15251 119 MGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF 198 (720)
Q Consensus 119 ~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f 198 (720)
|.||.++.++|+++|||+|.... .... ....+|+|+||..|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~--~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLR--DSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCccc--cccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 57999999999999999984332 1111 12378999999999999999999999887765432
Q ss_pred CCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccc--ccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCc
Q psy15251 199 NDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ--RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV-RYH 275 (720)
Q Consensus 199 ~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~--r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~ 275 (720)
..++|+||+ |.++++.++.++++..+..+.|.-.-. ..+.......|+ .....+++.+.+.++++++ |+.
T Consensus 63 ---~~i~Qe~i~-G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~i~~~l~gl~ 135 (161)
T PF02655_consen 63 ---LRIVQEFIE-GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPA---DTPLKEEIIELARRIAEALPGLR 135 (161)
T ss_dssp -----EEEE----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--
T ss_pred ---ceEEeeeeC-CEEeEEEEEEeCCceEEEEechHhhccccceeeeccccccc---CCchHHHHHHHHHHHHHHcCCCe
Confidence 229999999 589999999987544433333321100 112233344554 2344899999999999999 999
Q ss_pred ceeEEEEEEeCCCCcEEEEEecCCCCcc
Q psy15251 276 NAGTVEFIMDPSSGEFYFMEMNTRLQVE 303 (720)
Q Consensus 276 G~~~vEf~~~~~~g~~~~iEiNpR~~~~ 303 (720)
|...+||+++ + +++|+||||||++++
T Consensus 136 G~~giD~I~~-~-~~~~viEINPR~t~S 161 (161)
T PF02655_consen 136 GYVGIDFILD-D-GGPYVIEINPRFTGS 161 (161)
T ss_dssp EEEEEEEEES-S--SEEEEEEESS--GG
T ss_pred eeEeEEEEEe-C-CcEEEEEEcCCCCCC
Confidence 9999999999 4 779999999999853
No 81
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.5e-17 Score=176.54 Aligned_cols=288 Identities=18% Similarity=0.251 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCccccccc-EEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCccc-H
Q psy15251 18 EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMAD-EAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSEN-A 95 (720)
Q Consensus 18 ~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD-~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~lsE~-~ 95 (720)
....+..+++++.|++...++..........-.+- ....+.. .....+.. ..-.+.....+.|++++..+..... .
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~D~i~~R~~~~~~~~~ 94 (318)
T COG0189 17 DTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE-VIGLHYEL-IEEEDLSLLDELDVIIMRKDPPFDFAT 94 (318)
T ss_pred chHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh-cccccccc-ccccccchhccCCEEEEecCCchhhHH
Confidence 34778889999999998777543221111110000 0000000 00000000 0011223344678898876543333 4
Q ss_pred HHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHH-HhCCcEEEeecCCCCCcce
Q psy15251 96 EFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAE-RIGYPLMIKAVRGGGGKGM 174 (720)
Q Consensus 96 ~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~-~ig~PvvvKp~~g~Gg~Gv 174 (720)
.+++.++..|.+++ +++.++..++||..+.+++...|+|+|++.. ..+.+++..+.+ .+|||+|+||.+|++|+||
T Consensus 95 ~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i--~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV 171 (318)
T COG0189 95 RFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLI--TRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGV 171 (318)
T ss_pred HHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEE--EcCHHHHHHHHHHhcCCCEEEeeCCCCCccce
Confidence 56778999999988 8999999999999999999999999999987 778766666655 4689999999999999999
Q ss_pred EEeCCHH-HHHHHHHHHHHHHHhcCCCCcEEEeccccCCc-eEEEEEEEcccccEEEEE--eeeccccccceeEEEEcCC
Q psy15251 175 RIVRDSA-NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPR-HIEVQIIGDRYGNYVYLY--ERDCSVQRRHQKIIEEAPA 250 (720)
Q Consensus 175 ~~v~~~~-el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~-~~~v~v~~d~~G~~v~~~--~r~~s~~r~~~k~~e~~Pa 250 (720)
.++++.+ ++.+.++..... +...+|+|+||+-+. ..-.-++.| +.++..+ .|-+ .......-....-.
T Consensus 172 ~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~-~~~~~R~N~a~Gg~ 243 (318)
T COG0189 172 FLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIP-ASGDFRSNLARGGR 243 (318)
T ss_pred EEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEEeeecccc-CCCCceeecccccc
Confidence 9999999 888887776542 124699999998655 344444444 4555532 2211 00010011111100
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHH
Q psy15251 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVA 323 (720)
Q Consensus 251 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a 323 (720)
.-..++.+++.+.|.+++.++|. +...||++.+ .+| +|++|+|..++.-+. ++.++|+|....+++..
T Consensus 244 -~e~~~l~~e~~elA~kaa~~lGl-~~~GVDiie~-~~g-~~V~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 244 -AEPCELTEEEEELAVKAAPALGL-GLVGVDIIED-KDG-LYVTEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred -ccccCCCHHHHHHHHHHHHHhCC-eEEEEEEEec-CCC-cEEEEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 01122346788999999999988 8899999999 655 999999996644333 34456888877776654
No 82
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.77 E-value=4.2e-18 Score=169.03 Aligned_cols=182 Identities=21% Similarity=0.355 Sum_probs=111.0
Q ss_pred cCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh-CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcC
Q psy15251 120 GIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF 198 (720)
Q Consensus 120 ~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i-g~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f 198 (720)
.||..+.++|+++|||+|++.. +.+.+++.++.+++ ++|+|+||..|+.|+||.++++.+++...++.....
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~~--~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~----- 74 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETRV--TNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL----- 74 (190)
T ss_dssp HBHHHHHHHHHHTT-----EEE--ESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH----------
T ss_pred CCHHHHHHHHHHCCcCCCCEEE--ECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc-----
Confidence 5999999999999999999988 88999999999999 899999999999999999999999999887765432
Q ss_pred CCCcEEEeccccCC--ceEEEEEEEcccccEEEEEeeeccc--cccc-eeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Q psy15251 199 NDSKVLLEKYIQSP--RHIEVQIIGDRYGNYVYLYERDCSV--QRRH-QKIIEEAPAPGISSEFRSRLGSTGVQVARAVR 273 (720)
Q Consensus 199 ~~~~~lvEeyI~g~--~~~~v~v~~d~~G~~v~~~~r~~s~--~r~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg 273 (720)
+..+++|+||+.. +++.|.++++ +++..+.|.-.- .|.+ ..-....|. ++.+++.+.|.++++++|
T Consensus 75 -~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~~~g~~~~~~-----~l~~e~~~~a~~~~~~lg 145 (190)
T PF08443_consen 75 -ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNLSRGGKVEPY-----DLPEEIKELALKAARALG 145 (190)
T ss_dssp -TTT-EEEE----SS---EEEEEETT---EEEEEEE------------------EE---------HHHHHHHHHHHHHTT
T ss_pred -cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhhccCceEEEe-----cCCHHHHHHHHHHHHHhC
Confidence 5788999999864 4788888774 567666543111 0110 000011122 234688899999999999
Q ss_pred CcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHH
Q psy15251 274 YHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 274 ~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~ 322 (720)
+ ..+.||++.+ ++++||+|+|+.++-. -++..+|+|+.+..++.
T Consensus 146 l-~~~giDi~~~--~~~~~v~EvN~~~~~~--~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 146 L-DFAGIDILDT--NDGPYVLEVNPNPGFR--GIEEATGIDIAEEIAEY 189 (190)
T ss_dssp --SEEEEEEEEE--TTEEEEEEEETT---T--THHHHH---HHHHHHHH
T ss_pred C-CEEEEEEEec--CCCeEEEEecCCchHh--HHHHHHCcCHHHHHHhh
Confidence 9 7899997666 4569999999999733 46667899999988764
No 83
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.76 E-value=2.6e-17 Score=154.79 Aligned_cols=146 Identities=25% Similarity=0.377 Sum_probs=102.7
Q ss_pred EEEEEECCEEEEEEEEE-eCcEEEEEEeCCCeeEEEEeecccccccCCceeEEEeeecCeEEEEEEEECCeEEEEEcCce
Q psy15251 549 TVQIQHLNKEYNVQVTL-SAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGRIRSSVVCLDGSVSVFTKTGS 627 (720)
Q Consensus 549 ~~~~~~~~~~~~v~v~~-~~~~~~v~i~~~~~~~v~~~~~~~~~~~~~~~~l~~~~i~g~~~~~~~~~~~~~~~~~~~g~ 627 (720)
.+++.++|..|++.+.. ..+.|.+++ ||..|+|..+ .+. . . . . .+......-... ...
T Consensus 3 ~~~~~~~g~~~~v~v~~~~~~~~~itv-nG~~y~V~ve--e~~---~-~--~--~-~~~~~~~~~~~~--------~~p- 61 (153)
T PRK05641 3 KVKVIVDGVEYEVEVEELGPGKFRVSF-EGKTYEVEAK--GLG---I-D--L--S-AVQEQVPTPAPA--------PAP- 61 (153)
T ss_pred eEEEEECCEEEEEEEEeecCccEEEEE-CCEEEEEEEE--Ecc---c-c--c--c-cccccccccccc--------cCc-
Confidence 57889999999999998 777899999 9999998852 111 0 0 0 0 000000000000 000
Q ss_pred EEEEecCCCCC--CCCC-CCCCCCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCC
Q psy15251 628 YQFNLPGKSYS--LEPE-DSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704 (720)
Q Consensus 628 ~~~~~~~~~~~--~~~~-~~~~~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~ 704 (720)
.....|... ..++ .....++..|+|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++.
T Consensus 62 --~~~~~p~~~~~p~~~~~~~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~ 139 (153)
T PRK05641 62 --AVPSAPTPVAPAAPAPAPASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKE 139 (153)
T ss_pred --ccccCcccccccCccccCCCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCC
Confidence 000001000 0000 11123566899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCeEEEE
Q psy15251 705 GQSIQKNQNLVKI 717 (720)
Q Consensus 705 g~~v~~g~~l~~i 717 (720)
||.|..|++|++|
T Consensus 140 Gd~V~~Gq~L~~I 152 (153)
T PRK05641 140 GDTVDTGQPLIEL 152 (153)
T ss_pred CCEECCCCEEEEe
Confidence 9999999999987
No 84
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=137.99 Aligned_cols=69 Identities=23% Similarity=0.399 Sum_probs=66.8
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
..|+|||+|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999999999884
No 85
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=148.56 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=155.6
Q ss_pred HHHHHHHHcCCCEEE-eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHH
Q psy15251 71 KILDIAVRSQCQAIH-PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEI 149 (720)
Q Consensus 71 ~i~~~a~~~~~daI~-pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e 149 (720)
.+-+.+++.++-.++ |-.+++. ..+.+..++. ...+|+++++++.+.||..+...++.+ +++|+++.
T Consensus 66 ~~ek~le~~Da~LvIAPEdd~lL--y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e-------- 133 (307)
T COG1821 66 DEEKALEKADATLVIAPEDDGLL--YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE-------- 133 (307)
T ss_pred HHHHHHhcCCeeEEEecCcCChH--HHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc--------
Confidence 445556644444333 3334433 5566777776 566799999999999999999999999 99999763
Q ss_pred HHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEE
Q psy15251 150 LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY 229 (720)
Q Consensus 150 ~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~ 229 (720)
+...+--+|+||.+|+||.|+.+..+..++ +++|+||+ |.|.+|. +.++ +-+.
T Consensus 134 ----~~~~~~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIe-G~~lSVS-L~~G--Ekv~ 186 (307)
T COG1821 134 ----WAEEPKKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIE-GEHLSVS-LSVG--EKVL 186 (307)
T ss_pred ----cccCCceEEecccccCCcceeeccCCCcch-------------------hhHHHhcC-CcceEEE-EecC--Cccc
Confidence 112345699999999999999988886553 58899999 5899999 5543 3333
Q ss_pred EEeeeccccccc-----ee-EEEEcCCCCCCHHHHHHHHHHHHHHHHHcC-CcceeEEEEEEeCCCCcEEEEEecCCCCc
Q psy15251 230 LYERDCSVQRRH-----QK-IIEEAPAPGISSEFRSRLGSTGVQVARAVR-YHNAGTVEFIMDPSSGEFYFMEMNTRLQV 302 (720)
Q Consensus 230 ~~~r~~s~~r~~-----~k-~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg-~~G~~~vEf~~~~~~g~~~~iEiNpR~~~ 302 (720)
.. ++.|++ .+ .....++ ..+.++.+++.+.|.+.++.++ ++|...||+++. | .||+||||||+..
T Consensus 187 pL----svNrQfi~~~~~~~~y~gg~~-pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D-~pYvIEINpR~TT 258 (307)
T COG1821 187 PL----SVNRQFIIFAGSELVYNGGRT-PIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS--D-EPYVIEINPRPTT 258 (307)
T ss_pred cc----eechhhhhhccceeeeccCcC-CCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec--C-CcEEEEecCCCCc
Confidence 22 344431 11 2234555 4778999999999999999986 799999999998 4 5999999999975
Q ss_pred ccccccccccCcHHHHHHHHHcCCCCC
Q psy15251 303 EHPVSEMITGVDLVQWQLMVASGQELP 329 (720)
Q Consensus 303 ~~~~~e~~tGvdl~~~~l~~a~G~~l~ 329 (720)
..--...+++-++.+.+++-..|+-+.
T Consensus 259 p~vg~sr~~~~sv~~LLl~~~~g~~~~ 285 (307)
T COG1821 259 PTVGLSRVTPESVAELLLEGPTGKVLR 285 (307)
T ss_pred ceeeeeccccHHHHHHHhcCccccccc
Confidence 544444557888888888877776544
No 86
>PRK12458 glutathione synthetase; Provisional
Probab=99.68 E-value=2.6e-15 Score=161.72 Aligned_cols=278 Identities=14% Similarity=0.098 Sum_probs=170.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc--cccccEEEEeCCCC--CcccccCHHHHHHH-------HHHcCCCEE
Q psy15251 16 RGEIACRIMRTAKKMGIRVVSVYSDIDADALH--VKMADEAYRLEGKS--SLDTYLNQAKILDI-------AVRSQCQAI 84 (720)
Q Consensus 16 ~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~--~~~aD~~~~i~~~~--~~~~~~~~~~i~~~-------a~~~~~daI 84 (720)
......+++.++.++|+++..+... .-... ...+.-...+.... ....+ ....+. ..-..+|+|
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~V 83 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPG--DLTIRDDEALAFCAVTKKGKKYKKPENF---LSFLKKAEFKKERLPLAGFDVI 83 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecC--cEEEECCEEEEEEEEEEecCcccCccch---hhHhhccccccccCchhhCCEE
Confidence 4567889999999999998777432 22111 11111111121100 00100 001111 112347999
Q ss_pred EeCCC--CCcccHHHH--------HHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHH
Q psy15251 85 HPGYG--FLSENAEFA--------NAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQA 154 (720)
Q Consensus 85 ~pg~g--~lsE~~~~a--------~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~ 154 (720)
++..+ +..+...+. ..++..|++++ +++++++.+.||..+.++++ +++|++.. ..+.+++.+++
T Consensus 84 ~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v--~~~~~~~~~~~ 157 (338)
T PRK12458 84 FLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHI--SRNKEYIREFL 157 (338)
T ss_pred EEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEE--eCCHHHHHHHH
Confidence 98643 211112222 22356688766 99999999999999977665 68888876 67889999999
Q ss_pred HHhCCc-EEEeecCCCCCcceEEeCCHHH--HHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEE---
Q psy15251 155 ERIGYP-LMIKAVRGGGGKGMRIVRDSAN--FLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYV--- 228 (720)
Q Consensus 155 ~~ig~P-vvvKp~~g~Gg~Gv~~v~~~~e--l~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v--- 228 (720)
++.++| +|+||..|+||+||+++++.++ +...++.... ...+++|+||++..+.++.++.- +|+++
T Consensus 158 ~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~ 229 (338)
T PRK12458 158 EESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL-NGEPLERD 229 (338)
T ss_pred HHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE-CCEEEeec
Confidence 999765 9999999999999999987664 5454543321 45899999998543334444432 25677
Q ss_pred ---EEEeeeccc--cccceeE-EEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEeCCCCcEEEEEecCC
Q psy15251 229 ---YLYERDCSV--QRRHQKI-IEEAPAPGISSEFRSRLGSTGVQVARAV---RYHNAGTVEFIMDPSSGEFYFMEMNTR 299 (720)
Q Consensus 229 ---~~~~r~~s~--~r~~~k~-~e~~Pa~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEf~~~~~~g~~~~iEiNpR 299 (720)
+...|-... .|.+... ....+. .++ +++.+.|.+++.++ |+ ..+.||++ . .+++|||++
T Consensus 230 g~~~a~~R~~~~~d~RsN~~~Gg~~~~~-~l~----~~~~~ia~~~~~~l~~~GL-~~~gVDli-~-----~~l~EIN~~ 297 (338)
T PRK12458 230 GHYAAMRRVPAGGDVRSNVHAGGSVVKH-TLT----KEELELCEAIRPKLVRDGL-FFVGLDIV-G-----DKLVEVNVF 297 (338)
T ss_pred cceeEEEEecCCCCeeecccCCCcccCc-CCC----HHHHHHHHHHHHHHhhcCC-eEEeEEEE-C-----CEEEEEeCC
Confidence 655442111 0100000 011122 233 55666666666555 65 47889987 2 258999999
Q ss_pred CCcccccccccccCcHHHHHHHHHc
Q psy15251 300 LQVEHPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 300 ~~~~~~~~e~~tGvdl~~~~l~~a~ 324 (720)
..+..+-.+..+|+|+....++...
T Consensus 298 sp~g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 298 SPGGLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred CcchHHHHHHHhCCCHHHHHHHHHH
Confidence 8777776677889999999988654
No 87
>PRK06748 hypothetical protein; Validated
Probab=99.66 E-value=3.6e-16 Score=130.49 Aligned_cols=69 Identities=29% Similarity=0.390 Sum_probs=65.4
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEee-eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM-KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam-km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.|.|||||+|++|+|++||.|++||+|++||+| |+..+|.||.+|+|.++++++||.|..|++|++|++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 699999999999999999999999999999997 456699999999999999999999999999999975
No 88
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.66 E-value=3.6e-16 Score=142.49 Aligned_cols=70 Identities=34% Similarity=0.606 Sum_probs=68.0
Q ss_pred CCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
++..|+|||+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|..|++|++|
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 5668999999999999999999999999999999999999999999999999999999999999999987
No 89
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.66 E-value=3e-16 Score=129.22 Aligned_cols=68 Identities=29% Similarity=0.496 Sum_probs=66.6
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.|.||++|+|++|++++||+|++||+|+++|+|||+.+|.||.+|+|.++++++||.|..|++|++|+
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999999985
No 90
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.64 E-value=5.1e-16 Score=129.08 Aligned_cols=67 Identities=40% Similarity=0.605 Sum_probs=64.1
Q ss_pred eeecCCcceeeE------EecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 651 KVVSPMPGMVDK------VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 651 ~v~ap~~g~v~~------~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
.|++|++|...+ |+|++||.|++||+|+.||+|||+++|+||.+|+|.++++++|+.|..|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 488999998776 9999999999999999999999999999999999999999999999999999986
No 91
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.64 E-value=1e-14 Score=175.03 Aligned_cols=201 Identities=24% Similarity=0.323 Sum_probs=155.3
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEE-eCCHHHHHHHHHH
Q psy15251 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI-VRDSANFLAQLRS 189 (720)
Q Consensus 111 p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~-v~~~~el~~~~~~ 189 (720)
.+..+++.+.||..+|++|+++|||+|++.. +.+.+++.++++++|||+|+||..|++|+||.+ +.+.+++.++++.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~--~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~ 280 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTV--VQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEA 280 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE--ECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHH
Confidence 4678899999999999999999999999987 889999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeeccc-------------------ccc---ceeEE--
Q psy15251 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSV-------------------QRR---HQKII-- 245 (720)
Q Consensus 190 ~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~-------------------~r~---~~k~~-- 245 (720)
+... +..++||+||+| +++.+.++. |+++.+..|.... .|+ |.+.+
T Consensus 281 a~~~------~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~ 350 (864)
T TIGR02068 281 AVEE------SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTK 350 (864)
T ss_pred HHhh------CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccc
Confidence 7653 468999999995 899987764 4777776664321 011 00000
Q ss_pred ------------------E-------------------EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC--
Q psy15251 246 ------------------E-------------------EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDP-- 286 (720)
Q Consensus 246 ------------------e-------------------~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~-- 286 (720)
+ ++-+...++.+.++..+.|.++++++|+ ..+.||++...
T Consensus 351 i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~ 429 (864)
T TIGR02068 351 IRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDIS 429 (864)
T ss_pred cCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCC
Confidence 0 0111124667888999999999999999 66779999852
Q ss_pred ---CCCcEEEEEecCCCCcc-cccccccccCcHHHHHHHHHc
Q psy15251 287 ---SSGEFYFMEMNTRLQVE-HPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 287 ---~~g~~~~iEiNpR~~~~-~~~~e~~tGvdl~~~~l~~a~ 324 (720)
......+||+|+.++-. |..-..-.+.|+....++...
T Consensus 430 ~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 430 RPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred CCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 12246899999999844 433333347788888887775
No 92
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.61 E-value=2.2e-14 Score=165.66 Aligned_cols=199 Identities=19% Similarity=0.239 Sum_probs=145.1
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh-CCcEEEeecCCCCCcceEEeCC---HHHHHHH
Q psy15251 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLMIKAVRGGGGKGMRIVRD---SANFLAQ 186 (720)
Q Consensus 111 p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i-g~PvvvKp~~g~Gg~Gv~~v~~---~~el~~~ 186 (720)
.+..++.+|.||..+|++|+++|||+|++.. +.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~--~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGDE--FSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEEE--ECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 4677889999999999999999999999987 77877777766666 7999999999999999999876 7888888
Q ss_pred HHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecc---------cc------c----c---ce--
Q psy15251 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCS---------VQ------R----R---HQ-- 242 (720)
Q Consensus 187 ~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s---------~~------r----~---~~-- 242 (720)
++.+.+. +..+|||+||+ |+|+.+.|+.+ +++.+..|.-. +. . | |.
T Consensus 543 l~~A~~~------~~~VLVEefI~-G~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLP-GTEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEeccc-CCEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8776542 56899999999 59999988874 56666555210 00 0 0 00
Q ss_pred --eE---------------EEEcC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC
Q psy15251 243 --KI---------------IEEAP-------------------APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDP 286 (720)
Q Consensus 243 --k~---------------~e~~P-------------------a~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~ 286 (720)
++ .+..| +-.+++.+.+...+.|+++++++|+. .+.||+++..
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 00 00011 11356778899999999999999995 8999999862
Q ss_pred CC-------CcEEEEEecCCCCcc-cccccccccCcHHHHHHHH
Q psy15251 287 SS-------GEFYFMEMNTRLQVE-HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 287 ~~-------g~~~~iEiNpR~~~~-~~~~e~~tGvdl~~~~l~~ 322 (720)
-+ ....+||+|.+++.. |..--.-.+-|+....++.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 11 126799999999844 4333223345666555543
No 93
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.61 E-value=4.5e-14 Score=165.72 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=143.2
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh-CCcEEEeecCCCCCcceEEe---CCHHHHHHH
Q psy15251 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLMIKAVRGGGGKGMRIV---RDSANFLAQ 186 (720)
Q Consensus 111 p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i-g~PvvvKp~~g~Gg~Gv~~v---~~~~el~~~ 186 (720)
.+..+...|+||..+|++|+++|||+|++.. +.+.+++.+.+.++ |||+||||..|++|+||.++ .+.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~--~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAGDE--FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCEEE--EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 3455677889999999999999999999987 77888887777664 89999999999999999986 467888888
Q ss_pred HHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecc---------cc-------c---c---ceeE
Q psy15251 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCS---------VQ-------R---R---HQKI 244 (720)
Q Consensus 187 ~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s---------~~-------r---~---~~k~ 244 (720)
++.+.+. +..++|||||+ |+|+.|.++. |+++.+..|... +. + | |.+.
T Consensus 556 ~~~a~~~------~~~vlVEEfI~-G~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~ 625 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIV-GTEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTP 625 (752)
T ss_pred HHHHHhc------CCcEEEEeccc-CCEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccc
Confidence 8776532 56899999999 5899998874 467777666321 00 0 0 0000
Q ss_pred ---E-----------------EEcC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe
Q psy15251 245 ---I-----------------EEAP-------------------APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMD 285 (720)
Q Consensus 245 ---~-----------------e~~P-------------------a~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~ 285 (720)
+ +..| +-.+++.+.+...+.|+++++++|+. .+.||+++.
T Consensus 626 l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~ 704 (752)
T PRK02471 626 LEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIP 704 (752)
T ss_pred ccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeC
Confidence 0 0011 11356778999999999999999985 666999987
Q ss_pred CC-----CC--cEEEEEecCCCCcc-cccccccccCcHHHHHHHH
Q psy15251 286 PS-----SG--EFYFMEMNTRLQVE-HPVSEMITGVDLVQWQLMV 322 (720)
Q Consensus 286 ~~-----~g--~~~~iEiNpR~~~~-~~~~e~~tGvdl~~~~l~~ 322 (720)
+- .. ...+||+|.+++-. |..--.-...|+.+..++.
T Consensus 705 di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~ 749 (752)
T PRK02471 705 DLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILDK 749 (752)
T ss_pred CCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHHH
Confidence 21 11 57899999999843 3222222245666665554
No 94
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.60 E-value=9.4e-14 Score=147.16 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=133.0
Q ss_pred HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCC-------CCCCCcccCCCCCHHHHH---HHHHHhCCcEEEeecC
Q psy15251 98 ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAE-------VPVIPGYHGEDQNEEILM---EQAERIGYPLMIKAVR 167 (720)
Q Consensus 98 a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~G-------vp~p~~~~~~~~s~~e~~---~~~~~ig~PvvvKp~~ 167 (720)
....+..|++++ +++++++.+.||..|.+++.++| ||+|++.. +.+.+.+. .....++||+|+||..
T Consensus 85 ~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v--~~~~~~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 85 EYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLV--VYDDESSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred HHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEE--EcCHHHHHHHHHHHhcCCCCEEEeecc
Confidence 344566788877 88999999999999999999999 99999987 77766533 3346789999999999
Q ss_pred C---CCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEecccc-CCceEEEEEEEcccccEEEEEeeeccccccc--
Q psy15251 168 G---GGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ-SPRHIEVQIIGDRYGNYVYLYERDCSVQRRH-- 241 (720)
Q Consensus 168 g---~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~-g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~-- 241 (720)
| +.|++|.++.+++.|... +.++++||||+ +++.|-|-|++|. + ....| .|.....
T Consensus 162 g~Gss~gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh~g~d~RVfVvGd~---v-~~~~R-~S~~n~~~~ 223 (328)
T PLN02941 162 ADGSAKSHKMSLAYDQEGLSKL-------------EPPLVLQEFVNHGGVLFKVYVVGDY---V-KCVRR-FSLPDVSEE 223 (328)
T ss_pred cCCCccccceEEecCHHHHHhc-------------CCcEEEEEecCCCCEEEEEEEECCE---E-EEEEe-cCCcccccc
Confidence 9 789999999999887651 45799999995 4677888888863 3 33333 2221100
Q ss_pred -eeEEEE----------------c------CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCC-CcEEEEEec
Q psy15251 242 -QKIIEE----------------A------PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSS-GEFYFMEMN 297 (720)
Q Consensus 242 -~k~~e~----------------~------Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~-g~~~~iEiN 297 (720)
.....+ . |. .......+++.+.|.++.+++|. +.+.||++.+..+ ++++++|||
T Consensus 224 ~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~-~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN 301 (328)
T PLN02941 224 ELSSAEGVLPFPRVSNAAASADDADNGGLDPE-VAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDIN 301 (328)
T ss_pred cccccccccccccccccccccccccccccccc-cccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEec
Confidence 000000 0 00 01112345799999999999999 8899999999323 469999999
Q ss_pred CCCC
Q psy15251 298 TRLQ 301 (720)
Q Consensus 298 pR~~ 301 (720)
.-++
T Consensus 302 ~fP~ 305 (328)
T PLN02941 302 YFPG 305 (328)
T ss_pred CCCc
Confidence 9887
No 95
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.60 E-value=1.4e-14 Score=164.29 Aligned_cols=74 Identities=31% Similarity=0.561 Sum_probs=70.6
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEecC
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVPS 720 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 720 (720)
..++.|.|||||+|++|+|++||.|++||+|++|||||||++|+||.+|+|.++.+++|+.|..|++|++|+.+
T Consensus 523 ~~~~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~~ 596 (596)
T PRK14042 523 IGPGDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEVS 596 (596)
T ss_pred CCCCeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeCC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999764
No 96
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.58 E-value=4.7e-15 Score=140.91 Aligned_cols=70 Identities=31% Similarity=0.435 Sum_probs=67.0
Q ss_pred CCeeecCCcceeeE-------EecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 649 PSKVVSPMPGMVDK-------VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 649 ~~~v~ap~~g~v~~-------~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
...|+|||+|++++ |+|++||.|++||+|++||+|||+++|+||.+|+|++++++.|+.|..|++|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999997 79999999999999999999999999999999999999999999999999999884
No 97
>PRK07051 hypothetical protein; Validated
Probab=99.57 E-value=1.1e-14 Score=123.04 Aligned_cols=70 Identities=29% Similarity=0.467 Sum_probs=67.5
Q ss_pred CeeecCCcceeeE-------EecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 650 SKVVSPMPGMVDK-------VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 650 ~~v~ap~~g~v~~-------~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..++||++|++++ ++|++||.|++||+|+.+|+|||+++|+||.+|+|.++.+++|+.|..|++|++|++
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~~ 80 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIEE 80 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEeC
Confidence 4699999999999 999999999999999999999999999999999999999999999999999999863
No 98
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.56 E-value=1.1e-14 Score=144.95 Aligned_cols=72 Identities=31% Similarity=0.468 Sum_probs=68.6
Q ss_pred CCCeeecCCcceeeE-------EecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 648 DPSKVVSPMPGMVDK-------VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~-------~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
....|.|||+|+|++ |+|++||.|++||+|++||+|||+++|.||.+|+|++++++.||.|..|++|++|++
T Consensus 196 ~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 196 SHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CCCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 345799999999999 799999999999999999999999999999999999999999999999999999974
No 99
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.56 E-value=5.5e-13 Score=142.51 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCccccccc-EEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCC--cc--
Q psy15251 19 IACRIMRTAKKMGIRVVSVYSDIDADALHVKMAD-EAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFL--SE-- 93 (720)
Q Consensus 19 ~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD-~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~l--sE-- 93 (720)
...+++.+++++|+++..+....-......-.+. ..+.+... ...+..... .....-.+.|+|++..+.- .+
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~--~~~~~~~~~-~~~~~l~~~D~v~~R~~~~~~~~~~ 95 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPN--KQDWYTLGE-KVRLSLGELDAVLMRKDPPFDMEYI 95 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccC--CcceeecCc-ccccccccCCEEEEeCCCCCChhhh
Confidence 5889999999999998887432211111110111 01222110 011111000 0001112479999765321 11
Q ss_pred -cHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCc
Q psy15251 94 -NAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGK 172 (720)
Q Consensus 94 -~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~ 172 (720)
...+.+.++..|.+++ +++++++.+.||..+.+++. ++|++.. ..+.+++.+++++.| |+|+||..|++|+
T Consensus 96 ~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v--~~~~~~~~~~~~~~g-~vVvKPl~G~~G~ 167 (312)
T TIGR01380 96 YATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLV--TRDKAEIRAFLAEHG-DIVLKPLDGMGGE 167 (312)
T ss_pred HHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEE--eCCHHHHHHHHHHcC-CEEEEECCCCCCc
Confidence 1457788888999876 89999999999999887763 7999886 778999999999998 9999999999999
Q ss_pred ceEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeccccC--CceEEEEEEEcccccEEE-EEeeeccc--cccceeE-E
Q psy15251 173 GMRIVRDS-ANFLAQLRSAQRESQSAFNDSKVLLEKYIQS--PRHIEVQIIGDRYGNYVY-LYERDCSV--QRRHQKI-I 245 (720)
Q Consensus 173 Gv~~v~~~-~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g--~~~~~v~v~~d~~G~~v~-~~~r~~s~--~r~~~k~-~ 245 (720)
|+.++.+. .++...++... ..+..++++|+||+. +.++.+.+++ |+++. .+.|.... .|-+... .
T Consensus 168 gv~~v~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~~~Gg 239 (312)
T TIGR01380 168 GIFRLDPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNLAVGG 239 (312)
T ss_pred eEEEEcCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCccccccCCc
Confidence 99999763 33433333222 123468999999974 3577777765 46654 55442111 1111000 1
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHHHHHHHH
Q psy15251 246 EEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVA 323 (720)
Q Consensus 246 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a 323 (720)
...|. .++++. .++...+...++++|+ ..+.||++ | .||+|+|.--+....-.+..||+|+....++..
T Consensus 240 ~~~~~-~l~~e~-~~ia~~~~~~~~~~gl-~~agVDii-----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 240 RGEAT-ELSERD-REICADVAPELKRRGL-LFVGIDVI-----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred eeecc-CCCHHH-HHHHHHHHHHHHhcCC-cEEEEEEe-----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 12232 344432 2344444444466676 67889988 2 479999986333333355567999999888754
No 100
>PRK05246 glutathione synthetase; Provisional
Probab=99.55 E-value=7.4e-13 Score=141.98 Aligned_cols=273 Identities=14% Similarity=0.140 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCccccc--cc-EEEEeCCCCCcccccCHH--HHHHHHHHcCCCEEEeCCCCCc
Q psy15251 18 EIACRIMRTAKKMGIRVVSVYSDIDADALHVKM--AD-EAYRLEGKSSLDTYLNQA--KILDIAVRSQCQAIHPGYGFLS 92 (720)
Q Consensus 18 ~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~--aD-~~~~i~~~~~~~~~~~~~--~i~~~a~~~~~daI~pg~g~ls 92 (720)
....+++++++++|++++.+.... -...... +. ..+.+.+. ...+.... ....+ ...|+|++..+.-.
T Consensus 19 ~st~~l~~aa~~~G~~v~~~~~~d--l~~~~~~i~~~~~~~~~~~~--~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~ 91 (316)
T PRK05246 19 DSTFAMMLEAQRRGHELFYYEPDD--LSLRGGEVVARARPLTVRDD--KGDWYELGEEQRLPL---ADFDVILMRKDPPF 91 (316)
T ss_pred ChHHHHHHHHHHcCCEEEEEehhh--cEEECCEEEEEEEEEEeccC--CccceeccccccCcc---ccCCEEEEcCCCCC
Confidence 347889999999999987774321 1111100 00 00111110 01111100 00111 23799997643211
Q ss_pred --c---cHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecC
Q psy15251 93 --E---NAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167 (720)
Q Consensus 93 --E---~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~ 167 (720)
+ ...+.+.++..|++++ +++++++.+.||..+.+++. ++|++.. ..+.+++.++.++.+ |+|+||..
T Consensus 92 ~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~--~~~~~~~~~~~~~~~-~vVlKP~~ 163 (316)
T PRK05246 92 DMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLV--TRDKAEIRAFRAEHG-DIILKPLD 163 (316)
T ss_pred ChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEE--eCCHHHHHHHHHHCC-CEEEEECC
Confidence 1 1235667777898877 88999999999999988765 7899877 778999999999988 99999999
Q ss_pred CCCCcceEEeCC-HHHHHHHHHHHHHHHHhcCCCCcEEEeccccC--CceEEEEEEEcccccEEE-EEeeeccc--cccc
Q psy15251 168 GGGGKGMRIVRD-SANFLAQLRSAQRESQSAFNDSKVLLEKYIQS--PRHIEVQIIGDRYGNYVY-LYERDCSV--QRRH 241 (720)
Q Consensus 168 g~Gg~Gv~~v~~-~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g--~~~~~v~v~~d~~G~~v~-~~~r~~s~--~r~~ 241 (720)
|++|+|+.++.. ..++...++.+.. .+..++++|+||+. ..++.+.++. |++++ .+.|-... .|.+
T Consensus 164 G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv~---g~vv~~a~~R~~~~~~~rtN 235 (316)
T PRK05246 164 GMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLVD---GEPVGYALARIPAGGETRGN 235 (316)
T ss_pred CCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEEC---CEEhhheeEecCCCCCcccC
Confidence 999999999954 3444444433321 23568999999976 3577777663 57776 66552111 1111
Q ss_pred ee-EEEEcCCCCCCHHHHHHHHHHHHHHH---HHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcccccccccccCcHHH
Q psy15251 242 QK-IIEEAPAPGISSEFRSRLGSTGVQVA---RAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQ 317 (720)
Q Consensus 242 ~k-~~e~~Pa~~l~~~~~~~l~~~a~~i~---~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~~~~~e~~tGvdl~~ 317 (720)
.. -....|. .+++ +..+.|.+++ +.+|+ ..+.||++- . |++|+|..-.....-.+.+||+|+..
T Consensus 236 ~~~Gg~~~~~-~l~~----~~~~ia~~~~~~l~~~gl-~~~GVDli~-----~-~l~EvN~~~p~~~~~~~~~tg~~ia~ 303 (316)
T PRK05246 236 LAAGGRGEAT-PLTE----RDREICAAIGPELKERGL-IFVGIDVIG-----D-YLTEINVTSPTGIREIERLTGVDIAG 303 (316)
T ss_pred ccCCceEecc-CCCH----HHHHHHHHHHHHHHHhCC-CEEEEEEeC-----C-EEEEEeCCCchHHHHHHHHhCCCHHH
Confidence 00 0112233 2443 3444555444 56666 578899872 1 69999976333466677789999999
Q ss_pred HHHHHHcC
Q psy15251 318 WQLMVASG 325 (720)
Q Consensus 318 ~~l~~a~G 325 (720)
..++....
T Consensus 304 ~i~~~~~~ 311 (316)
T PRK05246 304 MLWDAIEA 311 (316)
T ss_pred HHHHHHHH
Confidence 99887643
No 101
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.54 E-value=2.8e-16 Score=192.45 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=107.1
Q ss_pred eCcEEEEEEeCCCeeEEEEeecccccccCCceeEEEeeecCeEEEEEEEECCeEEEEEcCceEEEEecCCCCCCCCCCCC
Q psy15251 566 SAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGRIRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSA 645 (720)
Q Consensus 566 ~~~~~~v~i~~~~~~~v~~~~~~~~~~~~~~~~l~~~~i~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 645 (720)
..|+|.+++ +...|++..|.+++..+ . ++|..+...+...++.++..|...|...+....+.... ....-
T Consensus 1059 ~~g~~~~~~-~~~~f~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1128 (1201)
T TIGR02712 1059 DNGRFKVRV-EETVFDLAEYQRFLADN-A-------DSIEAFKERQQGAFEAERARWIASGNADLAEEVTEAPE-EEADL 1128 (1201)
T ss_pred hcCcceeEE-EeeeecHHHHHHHHHHh-H-------HHHHHHHHHHHHHHHHHHHHHHhccchhhccccccCCC-ccccC
Confidence 457899999 78889888876666543 1 11444422233445556677777776554332221111 01111
Q ss_pred CCCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 646 LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 646 ~~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
+++...|.|||+|+|++|+|++||+|++||+|++||+||||++|.||.+|+|+++.+++||.|..|++|+.|+
T Consensus 1129 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1129 PEGAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999885
No 102
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.4e-12 Score=132.23 Aligned_cols=265 Identities=15% Similarity=0.188 Sum_probs=184.2
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEeeCC-CCCCcccccccEEEEeCCCCCcccccCH--HHHHHHHHHcCCCEEEeCCCCCc
Q psy15251 16 RGEIACRIMRTAKKMGIRVVSVYSDI-DADALHVKMADEAYRLEGKSSLDTYLNQ--AKILDIAVRSQCQAIHPGYGFLS 92 (720)
Q Consensus 16 ~G~~a~~iira~~~~G~~~v~v~s~~-d~~~~~~~~aD~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~daI~pg~g~ls 92 (720)
++..|+.|.+-||+.|++|++|+... +..-.....+|+.+.++ +|.|+ +.+.+-.++.+ +|+...|.+.
T Consensus 25 gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~~n--~I~IP~gSfv 96 (361)
T COG1759 25 GSHSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRELN--AIFIPHGSFV 96 (361)
T ss_pred ecchHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEec------hhHHHhhHHHHHHHHHcC--eEEecCCceE
Confidence 34679999999999999999997642 22233344577777664 55543 23445455544 3554455444
Q ss_pred ccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCc
Q psy15251 93 ENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGK 172 (720)
Q Consensus 93 E~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~ 172 (720)
.....-....+.-+|.+|+ ...++.-.|...-+.+|+++||+.|.-+ .+++|+. -|||||....-|||
T Consensus 97 ~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~~~----~~PeeId-------r~VIVK~pgAkggR 164 (361)
T COG1759 97 AYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPKKY----KSPEEID-------RPVIVKLPGAKGGR 164 (361)
T ss_pred EEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCccc----CChHHcC-------CceEEecCCccCCc
Confidence 5555555667788998875 5677777799999999999999999854 4777754 59999999999999
Q ss_pred ceEEeCCHHHHHHHHHHHHHHHHhcC-CCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccccc----------c
Q psy15251 173 GMRIVRDSANFLAQLRSAQRESQSAF-NDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRR----------H 241 (720)
Q Consensus 173 Gv~~v~~~~el~~~~~~~~~~~~~~f-~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~----------~ 241 (720)
|-+++.|.+|+.+..+++.....-.- +-.+..|||||-| -++..+.+...--+.+-++.-|-.++.. .
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ 243 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKD 243 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeeeeheeeccchhhccCCHHH
Confidence 99999999999999998876311000 0147899999996 5666665543211223333222211111 0
Q ss_pred e-------eEEE--EcCCCCCCHHHHHHHHHHHHHHHHHc------CCcceeEEEEEEeCCCCcEEEEEecCCCCcc
Q psy15251 242 Q-------KIIE--EAPAPGISSEFRSRLGSTGVQVARAV------RYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE 303 (720)
Q Consensus 242 ~-------k~~e--~~Pa~~l~~~~~~~l~~~a~~i~~al------g~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~ 303 (720)
| +... ..|. .+.+++.+++.+++.+.+++. |+.|++++|.+++ ++=++|+.|+.+|+.+.
T Consensus 244 ql~l~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t-~dl~~vVfevS~Ri~gG 318 (361)
T COG1759 244 QLELNLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVT-DDLEFVVFEVSARIVGG 318 (361)
T ss_pred HhhcCCCceEEEECCcch-hhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeec-CCccEEEEEEeccccCC
Confidence 1 1111 2344 577889999999999888873 7899999999999 77789999999999754
No 103
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.51 E-value=4.4e-14 Score=134.22 Aligned_cols=70 Identities=34% Similarity=0.489 Sum_probs=67.1
Q ss_pred CCeeecCCcceeeE-------EecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 649 PSKVVSPMPGMVDK-------VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 649 ~~~v~ap~~g~v~~-------~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
...|+|||.|++.. |+|++||.|++||+|++||+|||.++|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 45799999999987 89999999999999999999999999999999999999999999999999999874
No 104
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.48 E-value=1.9e-12 Score=136.25 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=129.3
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh--CC-cEEEeecCCCCCcceEEeCCHHH-----
Q psy15251 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI--GY-PLMIKAVRGGGGKGMRIVRDSAN----- 182 (720)
Q Consensus 111 p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i--g~-PvvvKp~~g~Gg~Gv~~v~~~~e----- 182 (720)
++.+..-++.||..+..+++++|||+|+++. +.+.+...+...++ ++ |+|+||..|++|+||.++++.++
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~--~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~ 104 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELYG--VIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYRK 104 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEEE--ecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEecccccccc
Confidence 6778888899999999999999999999876 44444332233333 56 69999999999999999976544
Q ss_pred ----------HHHHHHHHHHHHHhcCCC-CcEEEeccccCC-----------ceEEEEEEEcccccEEEEEeeeccc---
Q psy15251 183 ----------FLAQLRSAQRESQSAFND-SKVLLEKYIQSP-----------RHIEVQIIGDRYGNYVYLYERDCSV--- 237 (720)
Q Consensus 183 ----------l~~~~~~~~~~~~~~f~~-~~~lvEeyI~g~-----------~~~~v~v~~d~~G~~v~~~~r~~s~--- 237 (720)
+...+...........+. +.+++|+++... +.+.|.++.+ ..+..+-| ++.
T Consensus 105 ~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~vaa~~R-~~~~~~ 180 (317)
T TIGR02291 105 PSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPVMAMMR-LPTRAS 180 (317)
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEEEEEEE-ccCccC
Confidence 333333322111111122 235665554432 3556666554 34443333 111
Q ss_pred -cccc--e--eEE-------------------EEcCC-----CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCC
Q psy15251 238 -QRRH--Q--KII-------------------EEAPA-----PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSS 288 (720)
Q Consensus 238 -~r~~--~--k~~-------------------e~~Pa-----~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~ 288 (720)
.+.+ + ... ..-|- ..+.....+++.+.|.++.+++|+ |...+|++++ .+
T Consensus 181 ~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~-~~ 258 (317)
T TIGR02291 181 DGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLD-KE 258 (317)
T ss_pred CcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEe-CC
Confidence 0110 0 000 00011 123345678899999999999998 9999999998 56
Q ss_pred CcEEEEEecCCCCcccccccccccCcHHHHHHHHHc
Q psy15251 289 GEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVAS 324 (720)
Q Consensus 289 g~~~~iEiNpR~~~~~~~~e~~tGvdl~~~~l~~a~ 324 (720)
+.++++|+|++++-+ +......|++-.-..+...+
T Consensus 259 ~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~~~~ 293 (317)
T TIGR02291 259 EGPLVLELNARPGLA-IQIANGAGLLPRLKHIEARL 293 (317)
T ss_pred CCEEEEEeCCCCCCC-HHHHHHCCCcHHHHHHHHhh
Confidence 679999999999866 33334447766655555543
No 105
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.47 E-value=6.5e-13 Score=151.89 Aligned_cols=73 Identities=42% Similarity=0.676 Sum_probs=70.1
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..+..|.|||+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|+++.+++|+.|..|++|++|++
T Consensus 520 ~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 520 SAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999975
No 106
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.45 E-value=4e-13 Score=153.23 Aligned_cols=71 Identities=30% Similarity=0.513 Sum_probs=68.2
Q ss_pred CCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.+..|.|||+|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++.+++|+.|..|++|++|.
T Consensus 523 ~~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 523 AGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CCceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 45589999999999999999999999999999999999999999999999999999999999999999873
No 107
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.45 E-value=3.3e-13 Score=109.87 Aligned_cols=66 Identities=44% Similarity=0.723 Sum_probs=64.4
Q ss_pred eecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 652 v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
|+||++|+|.+|++++||.|++||+|+.+|+||+..+|+||.+|+|..+.++.|+.|..|++|+.|
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 789999999999999999999999999999999999999999999999999999999999999875
No 108
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.45 E-value=3.2e-13 Score=153.90 Aligned_cols=68 Identities=32% Similarity=0.543 Sum_probs=65.2
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeE
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNL 714 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l 714 (720)
.+++.|.|||||+|++|+|++||.|++||+|++|||||||++|.||.+|+|+++.+++||.|..|++|
T Consensus 515 ~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 515 GAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999975
No 109
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.30 E-value=1e-11 Score=103.11 Aligned_cols=61 Identities=33% Similarity=0.458 Sum_probs=59.2
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
+|++.+|++++||.|++||+|+.+|+|||..+|+||.+|+|++++++.|+.|..|++|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999875
No 110
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.29 E-value=6e-12 Score=138.06 Aligned_cols=64 Identities=25% Similarity=0.423 Sum_probs=62.0
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|..|++|++|++
T Consensus 104 ~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 104 TDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred ceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 5799999999999999999999999999999999999999999999999999999999999964
No 111
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.25 E-value=1.4e-11 Score=134.34 Aligned_cols=64 Identities=27% Similarity=0.337 Sum_probs=61.9
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++.+++||.|..|++|++|++
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence 4799999999999999999999999999999999999999999999999999999999999964
No 112
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.23 E-value=2e-11 Score=133.79 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=62.1
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|+++.+++|+.|..|++|+++++
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999974
No 113
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.12 E-value=1.4e-10 Score=127.44 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=61.9
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++.+++|+.|..|++|++|++
T Consensus 15 ~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~ 78 (407)
T PRK05704 15 TEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDE 78 (407)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 4699999999999999999999999999999999999999999999999999999999999974
No 114
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.03 E-value=1.2e-08 Score=106.37 Aligned_cols=182 Identities=14% Similarity=0.229 Sum_probs=122.1
Q ss_pred HHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCC-CC--CCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEe
Q psy15251 101 VEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAE-VP--VIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIV 177 (720)
Q Consensus 101 ~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~G-vp--~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v 177 (720)
-+..|++|+.+. ..||..+.+.|.+.. +. .|++.. .++.+++.++.++.+ -|+|||..|++|+||.++
T Consensus 4 k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~~--~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETEL--LTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCceE--cCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 456789999763 579999999999854 33 677766 788899999988865 699999999999999776
Q ss_pred C----------------------CHHHHHHHHHHHHHHHHhcCCCCcEEEecccc----CCceEEEEEEE--cccccE--
Q psy15251 178 R----------------------DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ----SPRHIEVQIIG--DRYGNY-- 227 (720)
Q Consensus 178 ~----------------------~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~----g~~~~~v~v~~--d~~G~~-- 227 (720)
. +.+++...+... .+...+|||+.|+ .++.|.+-++. ++.|+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 3 234444444432 3467999999996 35566665554 444532
Q ss_pred EEEEeeeccccccceeEEE------EcCC-CCC-----CHHHHHHHHHHHHHHHHH----cCC-cceeEEEEEEeCCCCc
Q psy15251 228 VYLYERDCSVQRRHQKIIE------EAPA-PGI-----SSEFRSRLGSTGVQVARA----VRY-HNAGTVEFIMDPSSGE 290 (720)
Q Consensus 228 v~~~~r~~s~~r~~~k~~e------~~Pa-~~l-----~~~~~~~l~~~a~~i~~a----lg~-~G~~~vEf~~~~~~g~ 290 (720)
..++.| +.....-+.. ..|. ..+ .....++|.+.+..+++. +|. .|-..+|+-+| .+|+
T Consensus 148 tg~~~R---va~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD-~~g~ 223 (262)
T PF14398_consen 148 TGIVAR---VAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGID-KNGK 223 (262)
T ss_pred EEEEEE---EcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEc-CCCC
Confidence 223322 1111111110 0110 011 234667777777777665 465 68899999999 8999
Q ss_pred EEEEEecCCCCc
Q psy15251 291 FYFMEMNTRLQV 302 (720)
Q Consensus 291 ~~~iEiNpR~~~ 302 (720)
+++||+|++++.
T Consensus 224 iWliEvN~kP~~ 235 (262)
T PF14398_consen 224 IWLIEVNSKPGK 235 (262)
T ss_pred EEEEEEeCCCCc
Confidence 999999999983
No 115
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.02 E-value=6.3e-10 Score=122.01 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=61.6
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|++
T Consensus 13 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~ 76 (403)
T TIGR01347 13 TEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEE 76 (403)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3599999999999999999999999999999999999999999999999999999999999974
No 116
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.01 E-value=1.5e-08 Score=111.94 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh-CCcEEEeecCCCCCc----ceEEeCCHHHHHHHHHHHHHHHH
Q psy15251 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLMIKAVRGGGGK----GMRIVRDSANFLAQLRSAQRESQ 195 (720)
Q Consensus 121 DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i-g~PvvvKp~~g~Gg~----Gv~~v~~~~el~~~~~~~~~~~~ 195 (720)
+++.+|++|+++|||+|++.. +++.+++.++++++ |||+++||....||+ ||++..+.+++.++++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~--~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIV--ATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCee--eCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 678999999999999999988 99999999999999 999999998655555 99999999999999988874321
Q ss_pred ---hc--CCC--CcEEEeccccCCceEEEEEEEcc-cccEEEEE
Q psy15251 196 ---SA--FND--SKVLLEKYIQSPRHIEVQIIGDR-YGNYVYLY 231 (720)
Q Consensus 196 ---~~--f~~--~~~lvEeyI~g~~~~~v~v~~d~-~G~~v~~~ 231 (720)
.. .+. ..++||+++++++|+.+.+..|. .|.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 00 111 36999999998899999999996 46665544
No 117
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.99 E-value=9.2e-10 Score=128.07 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=62.0
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|..|++|++|+.
T Consensus 13 ~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~ 76 (633)
T PRK11854 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFES 76 (633)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999975
No 118
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.97 E-value=3.9e-08 Score=103.60 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=120.8
Q ss_pred CCHHHHHHhcCHHHHHHHHHHCCCCCCCccc---------CCCCCHHHHHHHHHHh-CCcEEEeecCCCCCcceEEeCCH
Q psy15251 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYH---------GEDQNEEILMEQAERI-GYPLMIKAVRGGGGKGMRIVRDS 180 (720)
Q Consensus 111 p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~---------~~~~s~~e~~~~~~~i-g~PvvvKp~~g~Gg~Gv~~v~~~ 180 (720)
++.+...++.||..+++++.++|||+|+... ....+.+++.+++... ..++++||..|++|+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6778888999999999999999999999421 0134678888888764 57999999999999999998766
Q ss_pred HH--HHHHHHHHHHHHHhcCCCCcEEEeccccCCc-----------eEEEEEEEcccccEE--EEEee---e--------
Q psy15251 181 AN--FLAQLRSAQRESQSAFNDSKVLLEKYIQSPR-----------HIEVQIIGDRYGNYV--YLYER---D-------- 234 (720)
Q Consensus 181 ~e--l~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~-----------~~~v~v~~d~~G~~v--~~~~r---~-------- 234 (720)
+. +............. ..+..++||++|.... .+.|..+.+. |.+. ...-| .
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~ 173 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFH 173 (285)
T ss_pred cCcccccchhHHHHHHHh-cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccC
Confidence 51 11111111111111 1122899999997432 2344444443 3221 11111 0
Q ss_pred --------------ccc--cccceeEEEEcCCC-----CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEE
Q psy15251 235 --------------CSV--QRRHQKIIEEAPAP-----GISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYF 293 (720)
Q Consensus 235 --------------~s~--~r~~~k~~e~~Pa~-----~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~ 293 (720)
+.. .......++.-|-. .+.-...+++.+.+.++.+.+...+....|+.+| ++| |++
T Consensus 174 ~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait-~~G-p~l 251 (285)
T PF14397_consen 174 QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAIT-EDG-PVL 251 (285)
T ss_pred CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEc-CCC-cEE
Confidence 000 00111122222321 1223357899999999999888889999999999 788 999
Q ss_pred EEecCCCC
Q psy15251 294 MEMNTRLQ 301 (720)
Q Consensus 294 iEiNpR~~ 301 (720)
||.|.|.+
T Consensus 252 lE~N~~~~ 259 (285)
T PF14397_consen 252 LEGNARWD 259 (285)
T ss_pred EEeeCCCC
Confidence 99999954
No 119
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.97 E-value=2.9e-08 Score=109.49 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhC-CcEEEeec--CCCCC--cceEEeCCHHHHHHHHHHHHHHHH
Q psy15251 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIG-YPLMIKAV--RGGGG--KGMRIVRDSANFLAQLRSAQRESQ 195 (720)
Q Consensus 121 DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig-~PvvvKp~--~g~Gg--~Gv~~v~~~~el~~~~~~~~~~~~ 195 (720)
+.+.+|++|+++|||+|++.. +++.+++.++++++| ||+|+||. .|+.| -||+++.+.+++.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~--~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYV--ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 467889999999999999987 889999999999999 99999998 33322 389999999999999988764211
Q ss_pred hc--C---CC--CcEEEeccccCCceEEEEEEEccc
Q psy15251 196 SA--F---ND--SKVLLEKYIQSPRHIEVQIIGDRY 224 (720)
Q Consensus 196 ~~--f---~~--~~~lvEeyI~g~~~~~v~v~~d~~ 224 (720)
.. + +. ..++||+|+++++|+.+.++.|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS 117 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence 10 0 11 469999999988999999999863
No 120
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.96 E-value=1.1e-09 Score=127.52 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=62.4
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|+|++|+|++||.|++||+|++||+|||+++|.||++|+|.++++++|+.|..|++|++|++
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~ 280 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEV 280 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 35899999999999999999999999999999999999999999999999999999999999963
No 121
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.94 E-value=1.7e-09 Score=118.82 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=61.6
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-|+|++|+|++||.|++||+|++||+.|..++|.||.+|+|.++++++|+.|..|++|++|+.
T Consensus 16 EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~ 78 (404)
T COG0508 16 EGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78 (404)
T ss_pred eEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence 699999999999999999999999999999999999999999999999999999999999975
No 122
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.89 E-value=3.9e-09 Score=116.50 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=60.5
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.|+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 12 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 12 ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999986
No 123
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.87 E-value=3.6e-09 Score=120.84 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=61.2
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|..|++|++|+.
T Consensus 128 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 191 (546)
T TIGR01348 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSV 191 (546)
T ss_pred ceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEec
Confidence 3578999999999999999999999999999999999999999999999999999999999963
No 124
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.84 E-value=6.1e-09 Score=119.90 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=62.2
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|+|++|+|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|..|++|++|+.
T Consensus 147 ~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 211 (590)
T TIGR02927 147 VTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGD 211 (590)
T ss_pred cceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 34799999999999999999999999999999999999999999999999999999999999963
No 125
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.84 E-value=6e-09 Score=119.02 Aligned_cols=65 Identities=26% Similarity=0.420 Sum_probs=62.7
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
+.+|+|++|+|++||.|++||+|++||+|||+++|.|+.+|+|.++.++.|+.|..|++|++|+.
T Consensus 11 ~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 11 NEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred CCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999863
No 126
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.79 E-value=2.7e-08 Score=81.35 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=61.5
Q ss_pred cCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 654 ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
++-.|++.+|+++.|+.|.+||+++.+|+|||..++.||.+|+|.+..++.|+.+..|++|++|
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5778999999999999999999999999999999999999999999999999999999999875
No 127
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.78 E-value=1.2e-08 Score=117.27 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=61.0
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.|+|++|+|++||.|++||+|+++|+|||+++|+||++|+|.++++++|+.|..|++|++|..
T Consensus 132 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~ 194 (547)
T PRK11855 132 EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEV 194 (547)
T ss_pred eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999863
No 128
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.76 E-value=4.5e-08 Score=98.80 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=100.6
Q ss_pred cCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCC-----CCcceEE-eCCHHHHHHHHHHHHHH
Q psy15251 120 GIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG-----GGKGMRI-VRDSANFLAQLRSAQRE 193 (720)
Q Consensus 120 ~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~-----Gg~Gv~~-v~~~~el~~~~~~~~~~ 193 (720)
-+-..++++|+.+|||+|++.. +.+.+++.++++++|||+++|...-. ---||++ +.|.+++.++++++...
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~~--~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~ 87 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTRL--VTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRER 87 (222)
T ss_dssp E-HHHHHHHHHTTT------EE--ESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCeeE--eCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999998 99999999999999999999998654 1136777 89999999999999988
Q ss_pred HHhcCCC---CcEEEecccc-CCceEEEEEEEcc-cccEEEEEeeeccccccceeEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy15251 194 SQSAFND---SKVLLEKYIQ-SPRHIEVQIIGDR-YGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQV 268 (720)
Q Consensus 194 ~~~~f~~---~~~lvEeyI~-g~~~~~v~v~~d~-~G~~v~~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i 268 (720)
......+ ..++||+.++ ++.|+.+.+..|. .|-++.++.-.....-.....+..+| ++.....+|.+...-.
T Consensus 88 ~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~GG~~vE~~~D~~~~l~P---l~~~~a~~mi~~l~~~ 164 (222)
T PF13549_consen 88 VAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLGGIFVELLKDVAFRLPP---LSEADAREMIRELRAY 164 (222)
T ss_dssp HHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE-STTHHHH---EEEESS-----HHHHHHHHHTSTTH
T ss_pred HHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCCCceeeeecceEEeeCC---CCHHHHHHHHHHHHhH
Confidence 7654433 6899999999 8899999999986 57777765432222222222333334 5655555555443322
Q ss_pred HHHcCCcceeEEE-------------EEEeCCCCcEEEEEecCCC
Q psy15251 269 ARAVRYHNAGTVE-------------FIMDPSSGEFYFMEMNTRL 300 (720)
Q Consensus 269 ~~alg~~G~~~vE-------------f~~~~~~g~~~~iEiNpR~ 300 (720)
-..-||+|.--.+ +..+ ..++.=+|+||=+
T Consensus 165 ~lL~G~RG~p~~d~~al~~~l~~ls~l~~~--~p~I~eldiNPl~ 207 (222)
T PF13549_consen 165 PLLRGYRGRPPADLDALADLLVRLSQLAAD--LPEIAELDINPLI 207 (222)
T ss_dssp HHHH-------B-HHHHHHHHHHHHHHHHH--TTTEEEEEEEEEE
T ss_pred HhhcccCCCCCcCHHHHHHHHHHHHHHHHh--CCCEEEEEeeceE
Confidence 2223566632221 2223 3557788888855
No 129
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.69 E-value=3.8e-08 Score=113.06 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=61.5
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++.+++|+.|..|++|++|++
T Consensus 14 ~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~ 77 (547)
T PRK11855 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA 77 (547)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence 3699999999999999999999999999999999999999999999999999999999999863
No 130
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.62 E-value=8.7e-08 Score=106.58 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=61.8
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++.+++|+.|..|++|++|..
T Consensus 15 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~ 78 (411)
T PRK11856 15 TEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEE 78 (411)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999863
No 131
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.62 E-value=7.5e-08 Score=107.00 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=61.1
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCc-ccCCCeEEEEe
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQS-IQKNQNLVKIV 718 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~-v~~g~~l~~i~ 718 (720)
-.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|++|+
T Consensus 12 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 12 TTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred ceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 4699999999999999999999999999999999999999999999999999 99999999995
No 132
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.54 E-value=1.5e-07 Score=104.93 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=60.3
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCC-cccCCCeEEEEec
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ-SIQKNQNLVKIVP 719 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~-~v~~g~~l~~i~~ 719 (720)
.|+|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++.+++|+ .|..|++|++|++
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~ 79 (464)
T PRK11892 16 EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLE 79 (464)
T ss_pred eeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEcc
Confidence 58999999999999999999999999999999999999999999999995 7999999999964
No 133
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.51 E-value=2.2e-07 Score=104.66 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=59.9
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCC-cccCCCeEEEEe
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ-SIQKNQNLVKIV 718 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~-~v~~g~~l~~i~ 718 (720)
-.|+|++|+|++||.|++||+|+++|++|..++|.||.+|+|.++.+++|+ .|..|++|+++.
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 358999999999999999999999999999999999999999999999996 899999999883
No 134
>KOG0559|consensus
Probab=98.49 E-value=6.5e-08 Score=99.50 Aligned_cols=64 Identities=27% Similarity=0.407 Sum_probs=61.3
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.-|.|..|+.++||+|++++.|+.||..|...+|.||.+|+|+++++++||+|..|+.|+.|++
T Consensus 85 teG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 85 TEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred ccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 3578888999999999999999999999999999999999999999999999999999999976
No 135
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.47 E-value=2.7e-07 Score=106.40 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=61.1
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
-.|+|++|+|++||.|++||+|+++|+|||.++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 15 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 15 TEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred cEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999885
No 136
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.47 E-value=2.8e-06 Score=90.01 Aligned_cols=107 Identities=24% Similarity=0.359 Sum_probs=86.5
Q ss_pred HHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhC-CcEEEeecCCCCCc----ceEEeCCHHHHHHHHHHHHH----
Q psy15251 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIG-YPLMIKAVRGGGGK----GMRIVRDSANFLAQLRSAQR---- 192 (720)
Q Consensus 122 K~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig-~PvvvKp~~g~Gg~----Gv~~v~~~~el~~~~~~~~~---- 192 (720)
-++.|++++++|||+|+++. +.+.+++.++++++| .|+|+|+.--.||| ||+++.|.+|..++.+++..
T Consensus 5 EYqaKelf~~~GiPvp~g~v--~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYV--ATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCcee--eeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 46789999999999999998 999999999999998 89999999777665 79999999999998888764
Q ss_pred HHHhcCCCCcEEEecccc-CCceEEEEEEEcccccEEEE
Q psy15251 193 ESQSAFNDSKVLLEKYIQ-SPRHIEVQIIGDRYGNYVYL 230 (720)
Q Consensus 193 ~~~~~f~~~~~lvEeyI~-g~~~~~v~v~~d~~G~~v~~ 230 (720)
.....-.-..+|||+.++ -.+|+-+.++.|...+...+
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 111101125899999998 44499999999886555444
No 137
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.37 E-value=5.1e-07 Score=84.54 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=49.8
Q ss_pred eecCCcceeeEEecC-CCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCC
Q psy15251 652 VVSPMPGMVDKVLVQ-PGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706 (720)
Q Consensus 652 v~ap~~g~v~~~~v~-~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~ 706 (720)
....+.|.|+.+.+. +|++|++||++++||+|||..+|.||.+|+|++++.+.-+
T Consensus 38 ~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 38 YAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred HHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 556799999999986 8999999999999999999999999999999999876443
No 138
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.33 E-value=1.9e-05 Score=87.09 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHh---CCcEEEeecCCCCCcc-----------eEEeCCHHHHHHH
Q psy15251 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI---GYPLMIKAVRGGGGKG-----------MRIVRDSANFLAQ 186 (720)
Q Consensus 121 DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~i---g~PvvvKp~~g~Gg~G-----------v~~v~~~~el~~~ 186 (720)
.-+.+|++|+++|||+|++.. +.+.+|+.+.++++ ++|+|+|+.--.|||| |.++.+ +|+.++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~v--a~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAA--ASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHH
Confidence 577889999999999999987 89999999999999 6999999995444443 667766 999999
Q ss_pred HHHHHHHH--HhcC---C--CCcEEEeccccCCceEEEEEEEcc
Q psy15251 187 LRSAQRES--QSAF---N--DSKVLLEKYIQSPRHIEVQIIGDR 223 (720)
Q Consensus 187 ~~~~~~~~--~~~f---~--~~~~lvEeyI~g~~~~~v~v~~d~ 223 (720)
++++...- .... | -..++|||.+...+|+-+.+..|.
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 88886531 1100 1 136887777766889999999996
No 139
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.33 E-value=2.4e-05 Score=86.15 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=86.6
Q ss_pred HHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCc-EEEeecCCCC----CcceEEeCCHHHHHHHHHHHHHHH--
Q psy15251 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP-LMIKAVRGGG----GKGMRIVRDSANFLAQLRSAQRES-- 194 (720)
Q Consensus 122 K~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~P-vvvKp~~g~G----g~Gv~~v~~~~el~~~~~~~~~~~-- 194 (720)
-+..|++|+++|||+|++.. +.+.+++.++++++||| +++|+..-.| +-||.+..|.+++.++++++....
T Consensus 5 E~eak~lL~~yGIpvp~~~~--~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGAL--AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCceE--ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 46789999999999999998 89999999999999995 5999753333 347899999999999999887642
Q ss_pred -HhcC----CCCcEEEeccccCCceEEEEEEEcc-cccEEEEE
Q psy15251 195 -QSAF----NDSKVLLEKYIQSPRHIEVQIIGDR-YGNYVYLY 231 (720)
Q Consensus 195 -~~~f----~~~~~lvEeyI~g~~~~~v~v~~d~-~G~~v~~~ 231 (720)
.... .-..++||++++.++|+.+.+..|. .|.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 1111 1147999999998999999999986 46666664
No 140
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.32 E-value=3e-06 Score=82.08 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=73.9
Q ss_pred CCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeccccCCce
Q psy15251 136 VIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDS-ANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRH 214 (720)
Q Consensus 136 ~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~-~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~ 214 (720)
+|++.. ..+.+++.++.++.+. +|+||..|.||+||.++... ..+...++.+.. .+..++++|+|++.-.+
T Consensus 12 ~P~T~v--s~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~-----~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPTLV--SRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTK-----NGERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--EEE--ES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTT-----TTTS-EEEEE--GGGGG
T ss_pred CcCEEE--ECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHh-----cCCccEEEEeccccccC
Confidence 477776 6789999999999988 99999999999999999874 345555544332 23467999999986443
Q ss_pred EEEEEEEcccccEEEEEeeecc-----ccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcc--eeEEEEEEeCC
Q psy15251 215 IEVQIIGDRYGNYVYLYERDCS-----VQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHN--AGTVEFIMDPS 287 (720)
Q Consensus 215 ~~v~v~~d~~G~~v~~~~r~~s-----~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G--~~~vEf~~~~~ 287 (720)
=+..++.-+ |+.++..-|--. .+....-..+ ++ .++ ++-.+.|.++...|.=.| +..+|++ .
T Consensus 84 GDkRii~~n-G~~~~av~R~P~~gd~R~N~~~Gg~~~--~~-~lt----~~e~~i~~~i~~~L~~~Gl~f~GiDvi-g-- 152 (173)
T PF02955_consen 84 GDKRIILFN-GEPSHAVRRIPAKGDFRSNLAAGGSAE--PA-ELT----EREREICEQIGPKLREDGLLFVGIDVI-G-- 152 (173)
T ss_dssp -EEEEEEET-TEE-SEEEEE--SS-S---GGGTSCEE--EE-E------HHHHHHHHHHHHHHHHTT--EEEEEEE-T--
T ss_pred CCEEEEEEC-CEEhHHeecCCCCCCceeeeccCCcee--ec-CCC----HHHHHHHHHHHHHHhhcCcEEEEEecc-c--
Confidence 333333221 566665544211 0000101111 11 133 344455555555543334 5667876 2
Q ss_pred CCcEEEEEecC
Q psy15251 288 SGEFYFMEMNT 298 (720)
Q Consensus 288 ~g~~~~iEiNp 298 (720)
+ |++|+|-
T Consensus 153 -~--~l~EiNv 160 (173)
T PF02955_consen 153 -D--KLTEINV 160 (173)
T ss_dssp -T--EEEEEE-
T ss_pred -c--ceEEEec
Confidence 2 7999996
No 141
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.29 E-value=2.1e-06 Score=95.33 Aligned_cols=70 Identities=24% Similarity=0.440 Sum_probs=62.5
Q ss_pred CeeecCCcceeeEEe-cCCCCeeeCCCeEEEEEee---------------------------------------------
Q psy15251 650 SKVVSPMPGMVDKVL-VQPGQAVKTGDPIMVIIAM--------------------------------------------- 683 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~-v~~G~~V~~g~~l~~~eam--------------------------------------------- 683 (720)
..|.|+++|.|.+++ +++||.|++||+|+.|++=
T Consensus 124 ~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~ 203 (409)
T PRK09783 124 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIAT 203 (409)
T ss_pred EEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 469999999999998 9999999999999999820
Q ss_pred ---eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 684 ---KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 684 ---km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.-..+|+||++|+|.+..+++|+.|.+|++|++|..
T Consensus 204 ~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d 242 (409)
T PRK09783 204 RKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 242 (409)
T ss_pred CCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEc
Confidence 013589999999999999999999999999999853
No 142
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.26 E-value=1.9e-06 Score=75.41 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=47.4
Q ss_pred cCCcceeeEEec-CCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCc
Q psy15251 654 SPMPGMVDKVLV-QPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQS 707 (720)
Q Consensus 654 ap~~g~v~~~~v-~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~ 707 (720)
..+.|.|..+.. ++|+.|++||+|++||+||+..+|.||.+|+|.+++.+.++.
T Consensus 25 ~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 25 QDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 457899998655 559999999999999999999999999999999998776654
No 143
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.20 E-value=3e-06 Score=91.82 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=31.0
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+||++|+|..+.+++|+.|.+|++|+.|.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 579999999999999999999999999999864
No 144
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.19 E-value=3.3e-06 Score=84.04 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=75.1
Q ss_pred HHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCc-EEEeecCCCCCc----ceEEeCCHHHHHHHHHHHHHHHHh
Q psy15251 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP-LMIKAVRGGGGK----GMRIVRDSANFLAQLRSAQRESQS 196 (720)
Q Consensus 122 K~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~P-vvvKp~~g~Gg~----Gv~~v~~~~el~~~~~~~~~~~~~ 196 (720)
.+..|++|+++|||+|++.. +++++++.+++..+|.| +|+||.--.||| ||.++.|++|..++.+++......
T Consensus 4 EyqaK~ll~~~gi~vp~g~~--a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVV--ATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SEEE--ESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 46789999999999999998 99999999999999975 799998777766 589999999999888776532110
Q ss_pred -------cCCCCcEEEeccccCCceEEEEEEEcccccE
Q psy15251 197 -------AFNDSKVLLEKYIQSPRHIEVQIIGDRYGNY 227 (720)
Q Consensus 197 -------~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~ 227 (720)
...-..++||++++-.+|+-+.+..|+..+.
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~ 119 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRG 119 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTE
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCc
Confidence 0001478999999988999999998876444
No 145
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.16 E-value=1.3e-05 Score=73.70 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=53.8
Q ss_pred cCCcceeeEEec-CCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEc---CCCCccc---CCC-eEEEEec
Q psy15251 654 SPMPGMVDKVLV-QPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFY---AAGQSIQ---KNQ-NLVKIVP 719 (720)
Q Consensus 654 ap~~g~v~~~~v-~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~---~~g~~v~---~g~-~l~~i~~ 719 (720)
....|.|..+.. ++|++|++||++++||+||.-.+|.||.+|+|.+++. ...+.+. .|+ -|++|.+
T Consensus 33 ~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 33 QEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred HhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 457788877753 5699999999999999999999999999999999954 4446666 554 7888764
No 146
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.14 E-value=4.2e-06 Score=91.16 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=31.0
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
..|.++++|+|.+++|++||.|++||+|+.|+.
T Consensus 49 v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 49 VHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred EEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 368999999999999999999999999999986
No 147
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.13 E-value=2.1e-05 Score=82.80 Aligned_cols=174 Identities=17% Similarity=0.306 Sum_probs=106.8
Q ss_pred CCeEeCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCcccCCCC-CHHHHHHHH--HHhCCcEEEeecCCCC---C
Q psy15251 105 RLIFVGPSSEAIRNMGIKSTSKEIMIKA-------EVPVIPGYHGEDQ-NEEILMEQA--ERIGYPLMIKAVRGGG---G 171 (720)
Q Consensus 105 gl~~~Gp~~~~i~~~~DK~~~r~~l~~~-------Gvp~p~~~~~~~~-s~~e~~~~~--~~ig~PvvvKp~~g~G---g 171 (720)
.+.++ -++++++.+.|+..|.+++.+. .|.+|+... +. +.+++.+.. +.+.||+|+||....| +
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVV--INSDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEE--ESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEE--EcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 45555 5779999999999999988775 678888765 33 344454444 3467999999998654 5
Q ss_pred cceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEecccc-CCceEEEEEEEcccccEEEEEeeecccccc-----c-eeE
Q psy15251 172 KGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ-SPRHIEVQIIGDRYGNYVYLYERDCSVQRR-----H-QKI 244 (720)
Q Consensus 172 ~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~-g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~-----~-~k~ 244 (720)
..|.++.+++.|.+. ..++++||||. |+.-|-|-+++|. +++..|. |+..- . ...
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~-SLpn~~~~~~~~~~~ 216 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRP-SLPNVSSGKLDREEI 216 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTE----EEEEEEE-------SSS-TCGGC
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECC-CCCCCCccccccccc
Confidence 889999999998652 47899999996 4556777777763 3333332 11100 0 000
Q ss_pred -EE-----E----------c--CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCC-CcEEEEEecCCCC
Q psy15251 245 -IE-----E----------A--PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSS-GEFYFMEMNTRLQ 301 (720)
Q Consensus 245 -~e-----~----------~--Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~-g~~~~iEiNpR~~ 301 (720)
.. . . +. .....-.+.+.+.|..+=++||+ ..+++|++++..+ |++|+|.||.=+|
T Consensus 217 ~f~~~~vs~~~~~~~~~~~d~~~~-~~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 217 FFDFHQVSKLESSSDLSDLDKDPS-QVEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CCEGGGTCSTTTSSGGGSBSS-TT-TTTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred ceeccccCCccccCchhhcccCcc-cccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 00 0 0 11 01111245677888888889999 7899999999666 7899999999887
No 148
>PRK12784 hypothetical protein; Provisional
Probab=98.13 E-value=9.8e-06 Score=65.05 Aligned_cols=69 Identities=25% Similarity=0.347 Sum_probs=63.9
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEE-EEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYV-ITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~-i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.|.||.-|+|.+++|++++.|-+-++|+.|+.|.-+.+ |.--++|-|..+.+++||.|..+.+|+.+++
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed 76 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED 76 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence 48899999999999999999999999999999966554 7778999999999999999999999999985
No 149
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.13 E-value=4.2e-06 Score=74.57 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=43.9
Q ss_pred CcceeeEEec-CCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCC
Q psy15251 656 MPGMVDKVLV-QPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706 (720)
Q Consensus 656 ~~g~v~~~~v-~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~ 706 (720)
+-|.|+.+.. ++|++|++||++++||+||+..+|.||.+|+|.+++-+..+
T Consensus 28 ~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 28 NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 5677777765 67999999999999999999999999999999999655433
No 150
>KOG0557|consensus
Probab=98.12 E-value=4.4e-06 Score=89.88 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=60.6
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCC-CcccCCCeEEEEec
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAG-QSIQKNQNLVKIVP 719 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g-~~v~~g~~l~~i~~ 719 (720)
-|+|++|..++||.+.+||+|++||+.|-.+++.+..+|.+.+|++.+| ..|..|.+|+.|-+
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive 115 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVE 115 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEec
Confidence 6999999999999999999999999999999999999999999999999 89999999998854
No 151
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.12 E-value=4.8e-06 Score=89.09 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=60.7
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeee----------------------------------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK---------------------------------------------- 684 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk---------------------------------------------- 684 (720)
.|.++.+|+|.+++|++||.|++||+|+.|+.-.
T Consensus 49 ~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~ 128 (310)
T PRK10559 49 AIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQAN 128 (310)
T ss_pred EEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4889999999999999999999999999998510
Q ss_pred -----------------------e-EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 685 -----------------------M-EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 685 -----------------------m-~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
+ ...|+||++|+|.++.+++|+.|.+|++|+.|.
T Consensus 129 ~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 129 NVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 0 257999999999999999999999999999874
No 152
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.03 E-value=7.9e-06 Score=87.83 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=62.0
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeee---------------------------------------------
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK--------------------------------------------- 684 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk--------------------------------------------- 684 (720)
..|.||.+|+|.+++|++||.|++||+|+.++.-.
T Consensus 27 ~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~ 106 (322)
T TIGR01730 27 ADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDD 106 (322)
T ss_pred EEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 36999999999999999999999999999997310
Q ss_pred --------------------------eEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 685 --------------------------MEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 685 --------------------------m~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-...|+||++|+|..+.+++|+.|.+|++|+.|..
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 167 (322)
T TIGR01730 107 AKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVD 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence 02479999999999999999999999999998853
No 153
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.00 E-value=0.00042 Score=75.71 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=84.3
Q ss_pred HHHHHHHHHHC-----CCCCCCcccCCC-CCHHHHHHHHHH---hCCc-EEEeecCCCCCcc----eEEeCCHHHHHHHH
Q psy15251 122 KSTSKEIMIKA-----EVPVIPGYHGED-QNEEILMEQAER---IGYP-LMIKAVRGGGGKG----MRIVRDSANFLAQL 187 (720)
Q Consensus 122 K~~~r~~l~~~-----Gvp~p~~~~~~~-~s~~e~~~~~~~---ig~P-vvvKp~~g~Gg~G----v~~v~~~~el~~~~ 187 (720)
-+..|++|+++ |||+|++.. + .+.+++.+++++ ++.| +||||.--.|||| |.++.|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~~v--~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIRSA--QVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCCee--ccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 35678889888 999999986 5 899999999888 7775 6999998888774 89999999999998
Q ss_pred HHHHHHHHhcC----CCCcEEEeccccCCceEEEEEEEcccccEEE
Q psy15251 188 RSAQRESQSAF----NDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY 229 (720)
Q Consensus 188 ~~~~~~~~~~f----~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~ 229 (720)
+++...-.... .-..++||++++-.+|+-+.++.|+....+.
T Consensus 86 ~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii 131 (423)
T PLN02235 86 KERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSIS 131 (423)
T ss_pred HHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEE
Confidence 88764321000 1137899999988899999999988766633
No 154
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.99 E-value=1.2e-05 Score=88.97 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=30.8
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+||++|+|..+.+++|+.|.+|++|+.|.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~ 248 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVP 248 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEe
Confidence 479999999999999999999999999998854
No 155
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.99 E-value=1.1e-05 Score=87.19 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=30.8
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+||++|+|..+.+++|+.|.+|++|+.|.+
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~ 236 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSL 236 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEec
Confidence 589999999999999999999999999998854
No 156
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.99 E-value=7.4e-06 Score=62.40 Aligned_cols=34 Identities=35% Similarity=0.626 Sum_probs=31.2
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeee
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK 684 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk 684 (720)
.|.||++|+|.+|+|++||.|++||+|++|+.-.
T Consensus 4 ~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 4 TIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 5899999999999999999999999999998754
No 157
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.98 E-value=0.00022 Score=73.23 Aligned_cols=177 Identities=11% Similarity=0.155 Sum_probs=107.6
Q ss_pred HHHhcCHHHHHHHHHHCC--CCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHH
Q psy15251 116 IRNMGIKSTSKEIMIKAE--VPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRE 193 (720)
Q Consensus 116 i~~~~DK~~~r~~l~~~G--vp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 193 (720)
+..+.||...|+.+++.+ ...||.. +..++.+++. ...++-++||||..|+|+..+..-.+.-+...+...+.+-
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~w 91 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNRW 91 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHHH
Confidence 345789999999999985 3455544 2356666654 2456778999999999988777765544444443333221
Q ss_pred HHhcCC-----------CCcEEEeccccCC-----ceEEEEEEEcccccEEEEE---eeecc-----cccc--ceeEEEE
Q psy15251 194 SQSAFN-----------DSKVLLEKYIQSP-----RHIEVQIIGDRYGNYVYLY---ERDCS-----VQRR--HQKIIEE 247 (720)
Q Consensus 194 ~~~~f~-----------~~~~lvEeyI~g~-----~~~~v~v~~d~~G~~v~~~---~r~~s-----~~r~--~~k~~e~ 247 (720)
....++ ...+++|++|+.. ..+-+-++. |++.++. .|.-. +.+. .......
T Consensus 92 l~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~ 168 (239)
T PF14305_consen 92 LKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSD 168 (239)
T ss_pred hhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeCCCCCeEEEEECcccCCCccccC
Confidence 111111 2589999999642 234444443 3333321 11000 0000 0001001
Q ss_pred --cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCCCCcc
Q psy15251 248 --APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE 303 (720)
Q Consensus 248 --~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~ 303 (720)
.....-.++..++|.+.|.++.+.+.+ .-|||... +|++||-|+-.-++..
T Consensus 169 ~~~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~--~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 169 YPPDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNV--DGKIYFGELTFTPGAG 221 (239)
T ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEe--CCcEEEEeeecCCCCc
Confidence 111123467789999999999988765 78999998 6779999999988744
No 158
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.87 E-value=2.3e-05 Score=86.68 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=59.6
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeee----------------------------------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK---------------------------------------------- 684 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk---------------------------------------------- 684 (720)
.|.++++|+|.+++|++||.|++||+|+.|+.-.
T Consensus 65 ~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~ 144 (385)
T PRK09578 65 EVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEA 144 (385)
T ss_pred EEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 6999999999999999999999999999998410
Q ss_pred -------------------------eEEEEEcCCCeEEEEEEcCCCCcccCC--CeEEEEe
Q psy15251 685 -------------------------MEYVITSGTSGIIEEIFYAAGQSIQKN--QNLVKIV 718 (720)
Q Consensus 685 -------------------------m~~~i~a~~~G~v~~~~~~~g~~v~~g--~~l~~i~ 718 (720)
-...|+||++|+|.+..+++|+.|.+| ++|+.|.
T Consensus 145 ~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 145 VADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 024799999999999999999999996 4888774
No 159
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.87 E-value=3e-05 Score=69.53 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=42.2
Q ss_pred CcceeeEEec-CCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcC
Q psy15251 656 MPGMVDKVLV-QPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703 (720)
Q Consensus 656 ~~g~v~~~~v-~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~ 703 (720)
+-|.|+.+.. ++|++|++||++++||+||+-.+|.||.+|+|.+++-+
T Consensus 30 ~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 30 NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 5677777765 66999999999999999999999999999999998543
No 160
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.84 E-value=2.8e-05 Score=71.53 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=44.1
Q ss_pred cCCcceeeEEec-CCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCC
Q psy15251 654 SPMPGMVDKVLV-QPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704 (720)
Q Consensus 654 ap~~g~v~~~~v-~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~ 704 (720)
....|.|..+.. ++|++|++||++++|||||+-.+|.||.+|+|.+++-..
T Consensus 32 ~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l 83 (127)
T TIGR00527 32 QDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDAL 83 (127)
T ss_pred hhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhh
Confidence 457788876643 579999999999999999999999999999999987554
No 161
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.83 E-value=3.3e-05 Score=85.72 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=59.3
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeee----------------------------------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK---------------------------------------------- 684 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk---------------------------------------------- 684 (720)
.|.++++|+|.+++|++||.|++||+|+.|+.-.
T Consensus 67 ~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a 146 (397)
T PRK15030 67 EVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQA 146 (397)
T ss_pred EEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 5899999999999999999999999999998310
Q ss_pred ------------------------e-EEEEEcCCCeEEEEEEcCCCCcccCCCe--EEEEe
Q psy15251 685 ------------------------M-EYVITSGTSGIIEEIFYAAGQSIQKNQN--LVKIV 718 (720)
Q Consensus 685 ------------------------m-~~~i~a~~~G~v~~~~~~~g~~v~~g~~--l~~i~ 718 (720)
+ ...|+||++|+|.+..+++|+.|.+|++ |+.|.
T Consensus 147 ~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 207 (397)
T PRK15030 147 LADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 207 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEE
Confidence 1 2579999999999999999999999984 66663
No 162
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.77 E-value=4.2e-05 Score=84.55 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=59.4
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEee-----------------------e-----------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM-----------------------K----------------------- 684 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam-----------------------k----------------------- 684 (720)
.|.++++|+|.+++|++||.|++||+|+.|+.- |
T Consensus 63 ~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a 142 (385)
T PRK09859 63 EIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTA 142 (385)
T ss_pred EEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 589999999999999999999999999999831 0
Q ss_pred -------------------------eEEEEEcCCCeEEEEEEcCCCCcccCCC--eEEEEe
Q psy15251 685 -------------------------MEYVITSGTSGIIEEIFYAAGQSIQKNQ--NLVKIV 718 (720)
Q Consensus 685 -------------------------m~~~i~a~~~G~v~~~~~~~g~~v~~g~--~l~~i~ 718 (720)
-...|+||++|+|.+..+++|+.|.+|+ +|+.|.
T Consensus 143 ~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 203 (385)
T PRK09859 143 RTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ 203 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence 1258999999999999999999999985 687764
No 163
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.76 E-value=9e-05 Score=75.01 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=59.2
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..-|+||.+|.+.. .++.||.|+|||+|+.|+. .+|+||.+|+|.-+ ++.|-.|.+|.-|+.|+|
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECC
Confidence 34799999997766 8999999999999999986 79999999999876 699999999999999976
No 164
>KOG0558|consensus
Probab=97.69 E-value=2.4e-05 Score=80.53 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=58.9
Q ss_pred ceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 658 g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.+|.+|+|++||+|+.=|+||++.+.|...+|++-.+|+|+++..+++|....|++|+.++
T Consensus 79 v~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 79 VTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred eeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 4689999999999999999999999999999999999999999999999999999999886
No 165
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.68 E-value=6.4e-05 Score=82.68 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=58.9
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeee----------------------------------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK---------------------------------------------- 684 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk---------------------------------------------- 684 (720)
.|.||++|.|.+++|++||.|++||+|+.|+.-.
T Consensus 63 ~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is 142 (370)
T PRK11578 63 DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVS 142 (370)
T ss_pred EEecccceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999999999998610
Q ss_pred ---------------------------------------eEEEEEcCCCeEEEEEEcCCCCcccCCC---eEEEEe
Q psy15251 685 ---------------------------------------MEYVITSGTSGIIEEIFYAAGQSIQKNQ---NLVKIV 718 (720)
Q Consensus 685 ---------------------------------------m~~~i~a~~~G~v~~~~~~~g~~v~~g~---~l~~i~ 718 (720)
-...|+||++|+|.++.+..|+.|.+|+ +|+.|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~ 218 (370)
T PRK11578 143 QQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA 218 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEe
Confidence 0137999999999999999999998763 688764
No 166
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.68 E-value=6.4e-05 Score=83.83 Aligned_cols=69 Identities=28% Similarity=0.273 Sum_probs=59.3
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeee---------------------------------------------
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK--------------------------------------------- 684 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk--------------------------------------------- 684 (720)
..|.++++|+|.+++|++||.|++||+|+.|+.-.
T Consensus 88 v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~ 167 (415)
T PRK11556 88 VTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDA 167 (415)
T ss_pred EEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 36899999999999999999999999999996310
Q ss_pred -------------------------e-EEEEEcCCCeEEEEEEcCCCCcccCCC--eEEEEe
Q psy15251 685 -------------------------M-EYVITSGTSGIIEEIFYAAGQSIQKNQ--NLVKIV 718 (720)
Q Consensus 685 -------------------------m-~~~i~a~~~G~v~~~~~~~g~~v~~g~--~l~~i~ 718 (720)
+ ...|+||++|+|..+.+++|+.|.+|+ +|+.|.
T Consensus 168 ~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~ 229 (415)
T PRK11556 168 QQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence 0 347999999999999999999999984 677664
No 167
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.60 E-value=0.0001 Score=56.08 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=31.3
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|.||.+|+|.++++++||.|++|++|++|+.
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 579999999999999999999999999999975
No 168
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.56 E-value=0.0035 Score=60.72 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=95.6
Q ss_pred CHHHHHHhcCHHHHHH----HHHHCC---CCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHH
Q psy15251 112 SSEAIRNMGIKSTSKE----IMIKAE---VPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFL 184 (720)
Q Consensus 112 ~~~~i~~~~DK~~~r~----~l~~~G---vp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~ 184 (720)
+-.++-.+.||..... +.++.| +|..+... ..+..+. .....||+|||--.+.+|.|=.+|++..++.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~--ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~q 76 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTY--YPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQ 76 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EE--ESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeee--cCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHHH
Confidence 4566777888865443 334443 55544332 2233332 2335799999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccc-----ccceeEEEEcCCCCCCHHHHH
Q psy15251 185 AQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ-----RRHQKIIEEAPAPGISSEFRS 259 (720)
Q Consensus 185 ~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~-----r~~~k~~e~~Pa~~l~~~~~~ 259 (720)
+...-+... ++-+-+|.||+...++.+|-+++ +.... .|. |+. +-....+|..| ++ +
T Consensus 77 Di~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~-~R~-sis~nWK~N~gsa~lEqi~---~~----~ 138 (203)
T PF02750_consen 77 DIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAY-MRT-SISGNWKANTGSAMLEQIA---MT----E 138 (203)
T ss_dssp HHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEE-EEE-ESSSTSSTTSSSEEEEEE----------H
T ss_pred HHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEE-EEc-cccccccccccchheeecC---CC----h
Confidence 766554432 57789999998666777777775 33333 332 111 11122344433 22 4
Q ss_pred HHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecCC
Q psy15251 260 RLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTR 299 (720)
Q Consensus 260 ~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNpR 299 (720)
+......++.+.+|---.+.+|.+.. +||+-|++|+|--
T Consensus 139 ryk~Wvd~~s~lfGGlDI~~v~ai~~-kdGke~Iievnds 177 (203)
T PF02750_consen 139 RYKLWVDECSELFGGLDICAVDAIHG-KDGKEYIIEVNDS 177 (203)
T ss_dssp HHHHHHHHHGGGGG--SEEEEEEEEE-TTS-EEEEEEE-T
T ss_pred HHHHHHHHHHHHcCCccEEEEEEEEc-CCCCEEEEEecCC
Confidence 45556666677776657899999999 8999999999963
No 169
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=97.50 E-value=0.00046 Score=60.28 Aligned_cols=96 Identities=19% Similarity=0.250 Sum_probs=64.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHcC-CcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMG-IRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G-~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||+|+|.....++.++++-- ...+.+.+. +.. -..++ +.+.+ +..|.+.|.++|++.++|.+++|.
T Consensus 2 kVLviGsGgREHAia~~l~~s~~v~~v~~aPG-N~G--~~~~~-~~~~~-------~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSPSVEEVYVAPG-NPG--TAELG-KNVPI-------DITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTEEEEEEEE---TT--GGGTS-EEE-S--------TT-HHHHHHHHHHTTESEEEESS
T ss_pred EEEEECCCHHHHHHHHHHhcCCCCCEEEEeCC-CHH--HHhhc-eecCC-------CCCCHHHHHHHHHHcCCCEEEECC
Confidence 8999999999999999997753 333333322 222 12222 33433 557899999999999999999887
Q ss_pred C-CCcccHHHHHHHHHCCCeEeCCCHHHHHH
Q psy15251 89 G-FLSENAEFANAVEGNRLIFVGPSSEAIRN 118 (720)
Q Consensus 89 g-~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~ 118 (720)
+ .|. ..+++.+++.|++.+||+.++.++
T Consensus 71 E~pL~--~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 71 EAPLV--AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp HHHHH--TTHHHHHHHTT-CEES--HHHHHH
T ss_pred hHHHH--HHHHHHHHHCCCcEECcCHHHHhc
Confidence 5 222 356899999999999999888763
No 170
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.38 E-value=0.0001 Score=79.35 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=23.2
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
.|.+|.+|+| +++|++||+|++||+|+.++.
T Consensus 23 ~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 23 SVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 6899999999 999999999999999999983
No 171
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.36 E-value=0.00037 Score=75.26 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=30.3
Q ss_pred eeecCCc---ceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 651 KVVSPMP---GMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 651 ~v~ap~~---g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
.|.+|.+ |+|.+++|++||.|++||+|+.|+.
T Consensus 15 ~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 15 AVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 5889999 9999999999999999999999985
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.19 E-value=0.00076 Score=75.39 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.8
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|.||.+|+|.+++|++||.|++||+|+.++
T Consensus 44 ~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 44 KVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 35889999999999999999999999999885
No 173
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.07 E-value=0.0012 Score=60.32 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=36.2
Q ss_pred cceeeEEec-CCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcC
Q psy15251 657 PGMVDKVLV-QPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703 (720)
Q Consensus 657 ~g~v~~~~v-~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~ 703 (720)
-|.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.+++-+
T Consensus 30 lG~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 30 LGDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp H-SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred CCceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 366666654 56999999999999999999999999999999998744
No 174
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.06 E-value=0.0042 Score=65.97 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=24.5
Q ss_pred cEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccC
Q psy15251 160 PLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQS 211 (720)
Q Consensus 160 PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g 211 (720)
-+|+||..++.|+|++++++.+++.+. .......++||+||+.
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~ 109 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIEN 109 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SS
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCC
Confidence 499999999999999999999888643 1123589999999985
No 175
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.01 E-value=0.0047 Score=68.38 Aligned_cols=169 Identities=18% Similarity=0.146 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCcccHHHHHHH
Q psy15251 22 RIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAV 101 (720)
Q Consensus 22 ~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~lsE~~~~a~~~ 101 (720)
.+.+.+.+.|+.+++++.. . ..+.|.....+. .-++.|-+.+-... +++.++ +...+.++.
T Consensus 204 ~f~~~f~~~G~~~vI~d~~--~----L~y~~g~L~~~~-------~~ID~VyRR~Vt~e---~l~~~d---~~~~li~Ay 264 (445)
T PF14403_consen 204 VFQRLFEEHGYDCVICDPR--D----LEYRDGRLYAGG-------RPIDAVYRRFVTSE---LLERYD---EVQPLIQAY 264 (445)
T ss_pred HHHHHHHHcCCceEecChH--H----ceecCCEEEECC-------EeeehhhHhhhhHH---hhhccc---cchHHHHHH
Confidence 5677788999999888332 1 222444443321 22333433332222 334443 446777777
Q ss_pred HHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCC-------------CCCcccCCCCC--------HHHHHHHHHHhCCc
Q psy15251 102 EGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVP-------------VIPGYHGEDQN--------EEILMEQAERIGYP 160 (720)
Q Consensus 102 ~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp-------------~p~~~~~~~~s--------~~e~~~~~~~ig~P 160 (720)
.+-.+.++|+- ...+++||..+.-+-.+..-. +|-+.. ++. ..++.+++....--
T Consensus 265 ~~~av~~vgsf--rs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~--l~~~~~~~~g~~~dL~~~~~a~r~~ 340 (445)
T PF14403_consen 265 RDGAVCMVGSF--RSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRL--LTAGRTTYQGEDVDLVEFAIANRDR 340 (445)
T ss_pred hcCCeEEecch--hhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEE--EcCccccccccchhHHHHHHhchhc
Confidence 77778777543 445567777766443332211 222322 222 23555555555567
Q ss_pred EEEeecCCCCCcceEEe--CCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEc
Q psy15251 161 LMIKAVRGGGGKGMRIV--RDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD 222 (720)
Q Consensus 161 vvvKp~~g~Gg~Gv~~v--~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d 222 (720)
+|+||.++-||+||.+= .+.++.+++++++. ++++++|||++ +.......+.|
T Consensus 341 lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~-~~~~~~~~~~d 395 (445)
T PF14403_consen 341 LVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVR-PPREPMPAFED 395 (445)
T ss_pred EEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEec-CCccccccccC
Confidence 99999999999999984 46788888888765 56999999998 33333334444
No 176
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.87 E-value=0.0011 Score=59.20 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeeCCC-CCCcccccccEEEEeCCCCCcccccCH--HHHHHHHHHcCCCEEEeCCCCCcc
Q psy15251 17 GEIACRIMRTAKKMGIRVVSVYSDID-ADALHVKMADEAYRLEGKSSLDTYLNQ--AKILDIAVRSQCQAIHPGYGFLSE 93 (720)
Q Consensus 17 G~~a~~iira~~~~G~~~v~v~s~~d-~~~~~~~~aD~~~~i~~~~~~~~~~~~--~~i~~~a~~~~~daI~pg~g~lsE 93 (720)
+-.|+.|.+-||+.|++|++++.... ..-.....+|+.+.++ +|.++ +.+.+-.++.+ +|+...|.+.+
T Consensus 6 SHSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d------~f~di~~~~~q~~L~~~N--~I~VPhgSfv~ 77 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLD------SFSDILSEEVQEKLREMN--AIFVPHGSFVA 77 (124)
T ss_dssp STTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEES------SCGHCCSHHHHHHHHHTT--EEE--BTTHHH
T ss_pred chHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeC------CHHHHHhHHHHHHHHHCC--eEEecCCCeeE
Confidence 45799999999999999999975432 1122244799999874 33332 24555555544 46655665555
Q ss_pred cHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q psy15251 94 NAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY 140 (720)
Q Consensus 94 ~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~ 140 (720)
....-..-.+..+|++|+. ..++.-.|...-+.+|.++|||.|+.+
T Consensus 78 Y~G~d~ie~~~~vP~FGNR-~lLrwEseR~~~~~lL~~AgI~~P~~~ 123 (124)
T PF06849_consen 78 YVGYDRIENEFKVPIFGNR-NLLRWESERDKERNLLEKAGIPMPRKF 123 (124)
T ss_dssp HH-HHHHHHT-SS-EES-C-CGGHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred eecHHHHhhcCCCCeecCh-HHHHhhhhhhhHHHHHHHcCCCCCccC
Confidence 5554444455999999865 555555588888889999999999853
No 177
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.77 E-value=0.0029 Score=68.12 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=30.1
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+||.+|+|.+..+.+|+.|.+|++|+.+-+
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 459999999999999999999999999997754
No 178
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.72 E-value=0.03 Score=58.80 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=103.9
Q ss_pred HHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHH
Q psy15251 74 DIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQ 153 (720)
Q Consensus 74 ~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~ 153 (720)
+-+.+.++....--||-....+-++.....++++ ++...+- .-+...+..+..=-+.|++. +-|.+++..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~a~aP-----~GW~~~fa~~~~~~vL~G~t--vFs~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPDAAAP-----AGWSPAFAERVRDAVLPGYT--VFSREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCCCCCC-----CCcCHHHHHHHhhhccCCcc--ccCHHHHHHH
Confidence 5677777765554455444444445555555554 3332221 12233444444445778887 8899999988
Q ss_pred HHHh--CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEE
Q psy15251 154 AERI--GYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLY 231 (720)
Q Consensus 154 ~~~i--g~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~ 231 (720)
+..+ +-||-+||..+.||+|-.++.+.++|..+++.+-..... ...+++|+-++...-++|--+.-. |..+..+
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRVA-GLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEEC-CEEEEEe
Confidence 8776 679999999999999999999999999999876543332 467999999998777888766543 4555555
Q ss_pred eeecccccc
Q psy15251 232 ERDCSVQRR 240 (720)
Q Consensus 232 ~r~~s~~r~ 240 (720)
...|....+
T Consensus 206 GtQ~lT~dn 214 (355)
T PF11379_consen 206 GTQRLTRDN 214 (355)
T ss_pred eEeecccCC
Confidence 544444433
No 179
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.69 E-value=0.0023 Score=52.54 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.6
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-.|+||.+|+|.++.+++||.|++|++|+.++.
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~ 35 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLES 35 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 359999999999999999999999999999874
No 180
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0031 Score=57.30 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=42.7
Q ss_pred CcceeeEEe-cCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcC
Q psy15251 656 MPGMVDKVL-VQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703 (720)
Q Consensus 656 ~~g~v~~~~-v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~ 703 (720)
+-|.|+-+. .++|+.|++|+.+++|||-|--.+|.||.+|+|.+++-+
T Consensus 37 ~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 37 QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 567787775 588999999999999999999999999999999998744
No 181
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.55 E-value=0.0081 Score=63.88 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEee---eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM---KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam---km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
...|+||.+|. +...++.||.|++||+|+.|-.. ....+|+||.+|+|..+ ...-.|.+|+.|+.|
T Consensus 229 ~~~v~A~~~Gl-~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGI-FVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeE-EEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCCeecCCceEEEe
Confidence 45799999995 45669999999999999999763 35678999999999765 467789999999876
No 182
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.54 E-value=0.0034 Score=55.22 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=36.9
Q ss_pred eEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEc
Q psy15251 661 DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFY 702 (720)
Q Consensus 661 ~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~ 702 (720)
-+..|++||+|++||.|+.-+. -|...|.||.+|+|+.|.-
T Consensus 42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 5778999999999999999986 6689999999999998853
No 183
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.53 E-value=0.0028 Score=51.84 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=30.4
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..+.||..|+|.++++++||.|+.||+|+.||
T Consensus 39 ~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 39 IPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred ceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 46999999999999999999999999999986
No 184
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.51 E-value=0.01 Score=63.79 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=55.3
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee----eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM----KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam----km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..+.||.+| ++...++.||.|++||+|+.|-.. ....+|+||.+|+|.-.. ..-.|.+|+.|+.|..
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLAA 315 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEec
Confidence 579999999 555779999999999999999775 447789999999987543 4456999999998753
No 185
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.40 E-value=0.012 Score=56.35 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=61.5
Q ss_pred CcEEEeccccCCceEEEEEEEcccccEEEEEeeecccccc-----------------ceeE--EEEcCCCCCCHHHHHHH
Q psy15251 201 SKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRR-----------------HQKI--IEEAPAPGISSEFRSRL 261 (720)
Q Consensus 201 ~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~-----------------~~k~--~e~~Pa~~l~~~~~~~l 261 (720)
.+..||||+-| -++.+..|...=-+-+-+..-|-.++.+ .... +...|+ .+.+.+.+++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~-vlRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPA-VLRESLLPKV 98 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEE-EE-GGGHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCccc-chhHhhHHHH
Confidence 68999999995 6777777765432334444322222110 0011 112354 5778889999
Q ss_pred HHHHHHHHHHc------CCcceeEEEEEEeCCCCcEEEEEecCCCCcc
Q psy15251 262 GSTGVQVARAV------RYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE 303 (720)
Q Consensus 262 ~~~a~~i~~al------g~~G~~~vEf~~~~~~g~~~~iEiNpR~~~~ 303 (720)
.+++.+++++. |+.|++.+|.+++ ++.++++.|+.+|+.+.
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt-~dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVT-DDLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE--TTSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEc-CCceEEEEEEeccccCC
Confidence 99999888773 8899999999999 78899999999999753
No 186
>KOG3895|consensus
Probab=96.40 E-value=0.023 Score=59.37 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=121.3
Q ss_pred HHcCCCEEEeCCCCC--cccH---HHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHH----HHHHCC---CCCCCcccCCC
Q psy15251 77 VRSQCQAIHPGYGFL--SENA---EFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE----IMIKAE---VPVIPGYHGED 144 (720)
Q Consensus 77 ~~~~~daI~pg~g~l--sE~~---~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~----~l~~~G---vp~p~~~~~~~ 144 (720)
+....|+|+.+-+.. .+|. .+...+..+|||++ ++...+-.+.||-..+. +....| +|..+... .
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--Y 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee--c
Confidence 556678888775422 2233 34566788999988 78888888889876544 445566 55555332 1
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEccc
Q psy15251 145 QNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY 224 (720)
Q Consensus 145 ~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~ 224 (720)
-+-.+ ....-.||+|||--.+..|.|=.+|++.+|+.+.-.-+. .. +...-+|.||+.-..+.||-++..+
T Consensus 229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svva-l~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVA-LT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHHHH-HH-----hhhhhccccccccceeehhhhhhhH
Confidence 12122 222345999999999999999999999999877543322 11 3456788999866667777776543
Q ss_pred ccEEEEEeeeccccccceeEEEEcCCCCCCHHHHHHH------HHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecC
Q psy15251 225 GNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRL------GSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298 (720)
Q Consensus 225 G~~v~~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l------~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNp 298 (720)
. .+..+ ++. .|.|. ..-..+.++| .-+...+-+.+|---.|.|+.+.. ++|+=|++|+|-
T Consensus 300 K---aymRt--sIs-gnWKt-------NtGSamLEQIamseRyklwvdtcse~fGgldICav~alhs-KdGrd~i~eV~d 365 (488)
T KOG3895|consen 300 K---AYMRT--SIS-GNWKT-------NTGSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHS-KDGRDYIIEVMD 365 (488)
T ss_pred H---HHhhh--hhc-cCccc-------CchHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeec-ccchhheeeecc
Confidence 1 11110 111 11111 1122222222 223333444566667899999999 999999999997
No 187
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.38 E-value=0.012 Score=62.35 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=53.9
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee--eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM--KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam--km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
..++||.+|.+. ..++.||.|++||+|+.|... ....+|+||.+|+|..+ ...-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence 479999999765 589999999999999999653 22378999999999654 467789999999876
No 188
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=96.34 E-value=0.013 Score=63.04 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=55.0
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee----eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM----KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam----km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
.-+.||.+|.+. ..++.||.|++||+|+.|-.. ....+|+||.+|+|... ...-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~--~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR--HFPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEE-EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE--eCCCccCCCCEEEEe
Confidence 469999999654 779999999999999999764 24789999999999765 466789999999876
No 189
>PRK07051 hypothetical protein; Validated
Probab=96.33 E-value=0.0052 Score=51.77 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=30.1
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|+||.+|+|.++.+++||.|+.||+|+.++
T Consensus 48 ~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 35899999999999999999999999999986
No 190
>PRK06748 hypothetical protein; Validated
Probab=96.19 E-value=0.0098 Score=50.15 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=30.9
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-.|+||..|+|.++++++||.|+.|++|++|+.
T Consensus 5 ~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 5 EGVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred eEEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 458999999999999999999999999999985
No 191
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.09 E-value=0.016 Score=61.37 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=54.2
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEee---eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM---KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam---km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
..-+.||-.| +++..|+.||.|++||.|+.+-.+ +-+.+|+|+.+|+|.... -=-+|+.|+.+..+
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v 324 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVV 324 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeee
Confidence 3469999999 557889999999999999999988 778999999999997664 33466677766655
No 192
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=96.06 E-value=0.02 Score=62.53 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=53.6
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEee----eeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM----KMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam----km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
...+.||-+|.+ ...++.||.|++||+|+.|-.. .-+.+|+||.+|+|..+ ...-.|.+|+.|+.|
T Consensus 289 ~~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence 457999999955 5779999999999999999652 22344799999999654 578899999999876
No 193
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.99 E-value=0.0064 Score=57.02 Aligned_cols=33 Identities=36% Similarity=0.722 Sum_probs=30.9
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
..|.||..|+|.+++|++||.|+.||+|++|+.
T Consensus 108 neI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 108 NEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred ceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 469999999999999999999999999999973
No 194
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.99 E-value=0.11 Score=60.25 Aligned_cols=118 Identities=18% Similarity=0.273 Sum_probs=66.8
Q ss_pred eEEEEEEECCEEEEEEEEE-eC---cEEEEEEeCCCeeEEEEeeccccc-----ccCCceeEEEeeecCeEEEEEEEECC
Q psy15251 547 VKTVQIQHLNKEYNVQVTL-SA---HTYRVSIRGDPSSELCIKNASLTQ-----VSKYGYELVAEGEKGRIRSSVVCLDG 617 (720)
Q Consensus 547 ~~~~~~~~~~~~~~v~v~~-~~---~~~~v~i~~~~~~~v~~~~~~~~~-----~~~~~~~l~~~~i~g~~~~~~~~~~~ 617 (720)
..++.+.++|+.|.+++.. +. ..+.+++ ||...++......... .......+... +.|......+..++
T Consensus 465 ~~~~~v~i~Gk~~~i~~~~~g~~~~r~~~~~~-ng~~~~v~v~d~~~~~~~~~~~~~~~~~V~Ap-~~G~v~~~~V~~Gd 542 (592)
T PRK09282 465 PTEFKVEVDGEKYEVKIEGVKAEGKRPFYLRV-DGMPEEVVVEPLKEIVVGGRPRASAPGAVTSP-MPGTVVKVKVKEGD 542 (592)
T ss_pred CeEEEEEECCEEEEEEEeeccCCCcceEEEEe-cCceeeeeccCcccccccccCCCCCCceEeCC-CcEEEEEEEeCCCC
Confidence 4568888899999999987 33 4677788 8887766542111000 00111122222 33331111111111
Q ss_pred eEEEEEcCceEEEEecCCCCCCCCCCCCCCCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 618 SVSVFTKTGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 618 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
.+. .|+.-.... +......|.||.+|+|.++++++||.|..||+|++||
T Consensus 543 ~V~----~Gq~L~~ie-----------amKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 543 KVK----AGDTVLVLE-----------AMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred EEC----CCCEEEEEe-----------ccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 111 011111110 0012347999999999999999999999999999986
No 195
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.67 E-value=0.022 Score=54.93 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=17.2
Q ss_pred EEEcCCCCcccCCCeEEEEe
Q psy15251 699 EIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 699 ~~~~~~g~~v~~g~~l~~i~ 718 (720)
+.++++||.|.+|++|++++
T Consensus 105 ~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 105 KRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEecCCCEEeCCCEEEEEc
Confidence 34578999999999999885
No 196
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.60 E-value=0.032 Score=59.12 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEee--eeEEEEEcCCCeEEEEEEcCCCCcccCCCeE
Q psy15251 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM--KMEYVITSGTSGIIEEIFYAAGQSIQKNQNL 714 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam--km~~~i~a~~~G~v~~~~~~~g~~v~~g~~l 714 (720)
....++||.+|. +...++.||.|++||+|+.+-.. ....+|+||.+|+|.-+. ..-.|.+|+.|
T Consensus 222 ~~~~v~Ap~~G~-~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASGL-WYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCeE-EEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 445799999994 55678999999999999999442 446789999999997654 44566777765
No 197
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.54 E-value=0.016 Score=48.08 Aligned_cols=31 Identities=29% Similarity=0.701 Sum_probs=29.2
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ 680 (720)
..|.||.+|+|.++++++||.|..||+|+.|
T Consensus 44 ~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 44 MEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred eEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 3699999999999999999999999999986
No 198
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=95.50 E-value=0.031 Score=51.08 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=37.6
Q ss_pred CCeeecCCcceeeEEecCCCCe-eeC--C-CeEEEE--EeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQA-VKT--G-DPIMVI--IAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~-V~~--g-~~l~~~--eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.+.|.||..|+|..+.-.--.- ++. | +.|+-+ ++.+| .|.=-++++++||.|.+|++|+++.
T Consensus 35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l--------~g~gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeec--------CCCceEEEecCCCEEcCCCEEEEEc
Confidence 4689999999998774321111 111 1 122211 22222 2444467789999999999999885
No 199
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.49 E-value=0.019 Score=45.95 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=29.2
Q ss_pred EEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 689 ITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 689 i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
|+||.+|+|.++.+++|+.|++|++|+.++.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 7899999999999999999999999999874
No 200
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.27 E-value=0.041 Score=48.62 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=30.6
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
.|+||+.|.|..+.+++|+.|.+|++|+.|..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 389999999999999999999999999998864
No 201
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.07 E-value=0.099 Score=47.38 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=60.5
Q ss_pred CEEEEEcC----cHHHHHHHHHHHHcCCcEEEEeeCCCC---CCcccccc------cEEEEeCCCCCcccccCHHHHHHH
Q psy15251 9 DSILIANR----GEIACRIMRTAKKMGIRVVSVYSDIDA---DALHVKMA------DEAYRLEGKSSLDTYLNQAKILDI 75 (720)
Q Consensus 9 ~~iLI~~~----G~~a~~iira~~~~G~~~v~v~s~~d~---~~~~~~~a------D~~~~i~~~~~~~~~~~~~~i~~~ 75 (720)
|+|.|+|. +..+..+++.+++.|++++.|+...+. ...+..+. |-.+..- .-.....+++-
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~------~~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV------PPDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc------CHHHHHHHHHH
Confidence 57899984 556999999999999999999654432 11122222 3333221 11234556677
Q ss_pred HHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHH
Q psy15251 76 AVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSE 114 (720)
Q Consensus 76 a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~ 114 (720)
+.+.++..++-..| .++..+.+.+++.|++++||.--
T Consensus 75 ~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 75 AAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-H
T ss_pred HHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcc
Confidence 77788998886666 45688999999999999988743
No 202
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.95 E-value=0.093 Score=65.36 Aligned_cols=72 Identities=40% Similarity=0.681 Sum_probs=69.2
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
..++.|.|||||+|++|+|++||.|++||+|++|||||||++|.||.+|+|+++.+++|+.|..|++|++|+
T Consensus 1072 ~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1072 GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred ccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999985
No 203
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=94.94 E-value=0.28 Score=50.69 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCccccc-CHHHHHHHHHHcCCCEEE
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL-NQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~-~~~~i~~~a~~~~~daI~ 85 (720)
||.+|||+|+..-++.+++.+.+.|+++++-....... . ... ...+..++ + +.+.+.+++++.++++|+
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-~-~~~-~~~v~~G~-------l~~~~~l~~~l~~~~i~~VI 70 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-P-ADL-PGPVRVGG-------FGGAEGLAAYLREEGIDLVI 70 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-c-ccC-CceEEECC-------CCCHHHHHHHHHHCCCCEEE
Confidence 35589999999999999999999999876543332222 1 111 22333432 5 889999999999988876
Q ss_pred eCC-CCCcc-cHHHHHHHHHCCCeEe
Q psy15251 86 PGY-GFLSE-NAEFANAVEGNRLIFV 109 (720)
Q Consensus 86 pg~-g~lsE-~~~~a~~~~~~gl~~~ 109 (720)
=.. -|..+ .....++|.+.|++++
T Consensus 71 DATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 71 DATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred ECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 332 23322 1234567777777765
No 204
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.77 E-value=0.042 Score=56.26 Aligned_cols=48 Identities=35% Similarity=0.510 Sum_probs=40.1
Q ss_pred eecCCcceeeEEecCCCCeeeCCCeEEEEEeeee--EEEEEcCCCeEEEEEEc
Q psy15251 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM--EYVITSGTSGIIEEIFY 702 (720)
Q Consensus 652 v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm--~~~i~a~~~G~v~~~~~ 702 (720)
+-..++|..-++.|++||+|++||+|+. .|- +.-..||.+|+|++|.-
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 3457889999999999999999999986 443 46688999999998863
No 205
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.71 E-value=0.046 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.8
Q ss_pred EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|+||.+|+|.++++++||.|..|++|+.|+.
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 5678999999999999999999999999999974
No 206
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.071 Score=50.28 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=41.2
Q ss_pred CCCeeecCCcceeeEEecC---CCCeeeCCCeEEE---EEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 648 DPSKVVSPMPGMVDKVLVQ---PGQAVKTGDPIMV---IIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~~v~---~G~~V~~g~~l~~---~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
..+.|.||..|+|..++-. .|=+-..|-.|++ |++-+|+ |.-=+.++++||.|++||+|++++
T Consensus 41 ~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiDTV~L~--------GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 41 SEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGIDTVKLN--------GEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred CCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEeceeeEEEC--------CcceEEEeeCCCEEccCCEEEEEC
Confidence 4578889999988776421 2223333444443 3333333 555567889999999999999875
No 207
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=94.52 E-value=0.61 Score=43.13 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=72.8
Q ss_pred CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEEEcccccEEEEEeeecccc
Q psy15251 159 YPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238 (720)
Q Consensus 159 ~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~ 238 (720)
-|+.|||....-.---.++.+.+++... ....++..+++.+.++-..|+.+-++. |+++.... .
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~--------~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~-----Y 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGF--------GSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSP-----Y 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhcccc--------CCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEee-----c
Confidence 3899999996655444566766665411 112235789999999876777777665 46665531 1
Q ss_pred ccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceeEEEEEEeCCCCcEEEEEecCCCC
Q psy15251 239 RRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV-RYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301 (720)
Q Consensus 239 r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~~~~~g~~~~iEiNpR~~ 301 (720)
+.. +....+ .++.+.+.+.+++. ..--.+.+|+=++ ++|..+++|+|+=..
T Consensus 66 ~~~-------~~~~~~----~~~~~~~~~~~~~~~~~p~~~vlDvg~~-~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 66 RGD-------WDLEPD----PDVVAFAIQALAAAWTLPPAYVLDVGVT-DDGGWALVEANDGWS 117 (130)
T ss_pred CCC-------cccCCC----HHHHHHHHHHHHhcccCCCeEEEEEEEe-CCCCEEEEEecCccc
Confidence 111 111223 34445555555533 3356899999999 788999999999554
No 208
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.36 E-value=0.053 Score=50.88 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=39.5
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEE-EEEcCCCeEEEEEE
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEY-VITSGTSGIIEEIF 701 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~-~i~a~~~G~v~~~~ 701 (720)
...=|..|..+-..+.+|++|.+||.|+.+.+-|-|. .++||++|+|.-+.
T Consensus 82 L~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 82 LCLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp -EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 4556889999999999999999999999999999985 59999999998665
No 209
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=94.16 E-value=0.4 Score=49.79 Aligned_cols=93 Identities=10% Similarity=0.110 Sum_probs=57.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
+|||+|+..-+..+++.+.+.|+++++...+..........-...+.. .-++.+.+.+++++.++|+|+=...
T Consensus 2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~-------g~l~~~~l~~~l~~~~i~~VIDAtH 74 (256)
T TIGR00715 2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHT-------GALDPQELREFLKRHSIDILVDATH 74 (256)
T ss_pred eEEEEechHHHHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEE-------CCCCHHHHHHHHHhcCCCEEEEcCC
Confidence 789999833499999999999999877654443332222211122333 2367788889999999887763322
Q ss_pred -CCcc-cHHHHHHHHHCCCeEe
Q psy15251 90 -FLSE-NAEFANAVEGNRLIFV 109 (720)
Q Consensus 90 -~lsE-~~~~a~~~~~~gl~~~ 109 (720)
|..+ .....++|++.|++++
T Consensus 75 PfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 75 PFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCcEE
Confidence 2212 1233556666676665
No 210
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.06 E-value=0.066 Score=50.87 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=31.0
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|+||.+|+|.++++++||.|.+||+|+.++.
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEa 117 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEA 117 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEee
Confidence 678999999999999999999999999999874
No 211
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.01 E-value=0.034 Score=59.03 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=20.7
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
.|.++..|.|.+++|++||.|++||+|+.|+.
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 47788888888888888888888888888874
No 212
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.97 E-value=0.69 Score=53.66 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=31.6
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
...|.||.+|+|.+++|++||.|..||+|+.||.
T Consensus 562 e~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 562 ETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred eeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3579999999999999999999999999999984
No 213
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.82 E-value=0.074 Score=59.46 Aligned_cols=47 Identities=32% Similarity=0.370 Sum_probs=40.5
Q ss_pred cCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEE
Q psy15251 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIF 701 (720)
Q Consensus 654 ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~ 701 (720)
++..|.--+..|++||+|++||+|+.-+.. +...+.||.+|+|++|.
T Consensus 34 ~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 34 RDFVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred hhcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 445677778999999999999999987654 58999999999999995
No 214
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=93.75 E-value=0.84 Score=46.57 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=76.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCC-CcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDAD-ALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~-~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
+.+|||+|+..-++.+++.+...+.. ++++|-.+.. .+....+. ... .-+++.+.+.++.++.++|.++=
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~-~~~ss~t~~g~~l~~~~~~-~~~-------~G~l~~e~l~~~l~e~~i~llID 72 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVD-IILSSLTGYGAKLAEQIGP-VRV-------GGFLGAEGLAAFLREEGIDLLID 72 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCcc-EEEEEcccccccchhccCC-eee-------cCcCCHHHHHHHHHHcCCCEEEE
Confidence 44899999999999999999999833 4444433332 22222333 222 25689999999999999887763
Q ss_pred CCC-CCcc-cHHHHHHHHHCCCeEeC---CCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhC
Q psy15251 87 GYG-FLSE-NAEFANAVEGNRLIFVG---PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIG 158 (720)
Q Consensus 87 g~g-~lsE-~~~~a~~~~~~gl~~~G---p~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig 158 (720)
..- |..+ .....++|+..|++++- |+... + -+.++. +.|.+++.+.+.+.+
T Consensus 73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~-----------------~--gd~~~~--V~d~~ea~~~~~~~~ 128 (257)
T COG2099 73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAP-----------------N--GDNWIE--VADIEEAAEAAKQLG 128 (257)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEECCcccc-----------------C--CCceEE--ecCHHHHHHHHhccC
Confidence 321 2211 12346788888888763 21111 0 234444 778888887776664
No 215
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.49 E-value=0.21 Score=53.09 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeee--eEEEEEcCCCeEEEEE
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK--MEYVITSGTSGIIEEI 700 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk--m~~~i~a~~~G~v~~~ 700 (720)
..-|.||-+| ++...++.||.|++||+|+.|-..= -..+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4579999999 5567799999999999999997541 2456899999998765
No 216
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.37 E-value=0.086 Score=50.35 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=30.1
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|.||..|+|.+++++.|+.|+.||+|+.|+
T Consensus 124 ~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 124 NEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred eEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 46999999999999999999999999999885
No 217
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=93.24 E-value=0.095 Score=50.11 Aligned_cols=32 Identities=34% Similarity=0.640 Sum_probs=30.2
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|.||..|+|.+++++.||.|+.||+|+.||
T Consensus 125 ~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 125 NEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred eEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 46999999999999999999999999999885
No 218
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.14 E-value=0.34 Score=53.07 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=79.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcC-CcEEEEeeCCCCCCcccccc---cEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMG-IRVVSVYSDIDADALHVKMA---DEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G-~~~v~v~s~~d~~~~~~~~a---D~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
|++|||+|.|.++..++..|.+.| .++.+.+...+......... -++..+ +..|.+++.++.++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~v-------D~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQV-------DAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEe-------cccChHHHHHHHhcC--CE
Confidence 469999999999999999999988 88777754433222211111 123333 557888999999887 76
Q ss_pred EEeCCC-CCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q psy15251 84 IHPGYG-FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY 140 (720)
Q Consensus 84 I~pg~g-~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~ 140 (720)
++-.-. ++ +..+.++|.+.|+.++-.+... -+....+..+.++|+-..++.
T Consensus 72 VIn~~p~~~--~~~i~ka~i~~gv~yvDts~~~----~~~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 72 VINAAPPFV--DLTILKACIKTGVDYVDTSYYE----EPPWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred EEEeCCchh--hHHHHHHHHHhCCCEEEcccCC----chhhhhhHHHHHcCeEEEccc
Confidence 664432 33 3578899999999987432211 113678888999998776653
No 219
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=93.09 E-value=0.098 Score=58.63 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEE
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIF 701 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~ 701 (720)
.-.|.--+..|++||+|++||+|+.-+.. +...+.||.+|+|+.|.
T Consensus 36 qh~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 36 DYVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred hcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 34566678999999999999999966544 57899999999999994
No 220
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=93.09 E-value=0.14 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=15.1
Q ss_pred EEEEcCCCCcccCCCeEEEEe
Q psy15251 698 EEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 698 ~~~~~~~g~~v~~g~~l~~i~ 718 (720)
=+.++++||.|.+|++|+++.
T Consensus 86 F~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 86 FETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EEESS-TTSEE-TTEEEEEE-
T ss_pred eEEEEeCCCEEECCCEEEEEc
Confidence 345677999999999999885
No 221
>KOG2799|consensus
Probab=93.08 E-value=0.36 Score=51.09 Aligned_cols=69 Identities=26% Similarity=0.303 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCC-cEEEeecCCCCCc-----------ceEEeCCHHHHHHHHH
Q psy15251 121 IKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGY-PLMIKAVRGGGGK-----------GMRIVRDSANFLAQLR 188 (720)
Q Consensus 121 DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~-PvvvKp~~g~Gg~-----------Gv~~v~~~~el~~~~~ 188 (720)
.-+...+++++.|+.+|+++. ..|++|+.++++++|- -+|||+..-+||| ||.+|.+++|.++.-.
T Consensus 26 hey~~~~ll~~~Gv~vp~g~v--A~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~ 103 (434)
T KOG2799|consen 26 HEYRSAALLRKYGINVPLGYV--AKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVAS 103 (434)
T ss_pred HHHHHHHHHHHcCCCCCCCcc--cCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHH
Confidence 345568999999999999998 9999999999999974 4999998766554 6899999998877666
Q ss_pred HHH
Q psy15251 189 SAQ 191 (720)
Q Consensus 189 ~~~ 191 (720)
++.
T Consensus 104 qmi 106 (434)
T KOG2799|consen 104 QMI 106 (434)
T ss_pred Hhh
Confidence 554
No 222
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.99 E-value=0.11 Score=56.19 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=30.4
Q ss_pred CCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
..-.|.||++|+|.+++|++||.|++||+|+.|+.
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 44578999999999999999999999999998863
No 223
>KOG2156|consensus
Probab=92.90 E-value=0.92 Score=50.31 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=48.2
Q ss_pred CCCCCCcccCCCCCHHHHHHHHHHhC-CcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccC
Q psy15251 133 EVPVIPGYHGEDQNEEILMEQAERIG-YPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQS 211 (720)
Q Consensus 133 Gvp~p~~~~~~~~s~~e~~~~~~~ig-~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g 211 (720)
.++.-|......++.+++.+.+++.. --+||||..++-|.||++++...++.. +.+++||+||+.
T Consensus 279 ef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieR 344 (662)
T KOG2156|consen 279 EFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIER 344 (662)
T ss_pred ccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhc
Confidence 34443333234678888888877632 228899999999999999999887642 568899999885
Q ss_pred C
Q psy15251 212 P 212 (720)
Q Consensus 212 ~ 212 (720)
+
T Consensus 345 P 345 (662)
T KOG2156|consen 345 P 345 (662)
T ss_pred c
Confidence 3
No 224
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=92.78 E-value=0.13 Score=42.09 Aligned_cols=31 Identities=42% Similarity=0.655 Sum_probs=28.8
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ 680 (720)
..|.||.+|+|.+++++.|+.|..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4699999999999999999999999999864
No 225
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.76 E-value=0.1 Score=58.47 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=30.6
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|.||.+|.|.+++|++||.|++||+|+.|+
T Consensus 59 ~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~ 90 (421)
T TIGR03794 59 DTIQSPGSGVVIDLDVEVGDQVKKGQVVARLF 90 (421)
T ss_pred eEEECCCCeEEEEEECCCcCEECCCCEEEEEC
Confidence 36999999999999999999999999999998
No 226
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.67 E-value=0.25 Score=55.27 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=46.8
Q ss_pred eeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 660 VDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 660 v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
|.-..|+.++.-..=+....+++ .=+..|.++.+|+|.++++++||.|++|++|++|++
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 44445566664444456677887 356789999999999999999999999999999975
No 227
>PRK05849 hypothetical protein; Provisional
Probab=92.66 E-value=5.5 Score=47.85 Aligned_cols=176 Identities=13% Similarity=0.171 Sum_probs=102.3
Q ss_pred hcCHHHHHHHHHH--CCCCCCCcccCCC----CCHHHHHHHHHHh--CCcEEEeecCCC------CCcce--EE--eCC-
Q psy15251 119 MGIKSTSKEIMIK--AEVPVIPGYHGED----QNEEILMEQAERI--GYPLMIKAVRGG------GGKGM--RI--VRD- 179 (720)
Q Consensus 119 ~~DK~~~r~~l~~--~Gvp~p~~~~~~~----~s~~e~~~~~~~i--g~PvvvKp~~g~------Gg~Gv--~~--v~~- 179 (720)
++.|...-..|+. .|.++||++.... ++.+.+.+..... +-|++|..+.-+ +.-|. .+ |..
T Consensus 8 ~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~ 87 (783)
T PRK05849 8 FQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNAD 87 (783)
T ss_pred cchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCCC
Confidence 5678888888888 9999999876332 2334444443332 468999977532 22333 23 223
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCcEEEeccccCCceEEEEEE-Ecc-cccEEEEEeeecccc--------cc-ceeEEEE
Q psy15251 180 -SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQII-GDR-YGNYVYLYERDCSVQ--------RR-HQKIIEE 247 (720)
Q Consensus 180 -~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~~~~~v~v~-~d~-~G~~v~~~~r~~s~~--------r~-~~k~~e~ 247 (720)
.+++..++.++.+...+ ..+..++||+.|.+. ..+=-+| .|. .|..-.+++..+.-+ +. .+.++..
T Consensus 88 ~~~~L~~AI~~V~aS~~~-~~~~aVlVQ~MV~~~-~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~~~~~~~~ 165 (783)
T PRK05849 88 SKDQLLKAIEKVIASYGT-SKDDEILVQPMLEDI-VLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGSATTVYHY 165 (783)
T ss_pred cHHHHHHHHHHHHHhhCC-CCCCeEEEEeCccCC-CceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCCCceeeec
Confidence 34899999888754221 345689999999731 1111111 111 111111111111000 00 1112221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecC
Q psy15251 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298 (720)
Q Consensus 248 ~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNp 298 (720)
...+.++++...++.+.+.++-+.+|. -+-.|||-+| ++|++|++-+=|
T Consensus 166 ~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfaid-~~g~L~lLQ~RP 214 (783)
T PRK05849 166 RDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAID-EKEELYILQVRP 214 (783)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEEc-cCCEEEEEEccC
Confidence 112357788889999999998888876 3789999997 689999998754
No 228
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.53 E-value=0.2 Score=54.62 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=32.4
Q ss_pred EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|.++.+|+|.++++++||.|++|++|++|++
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 6889999999999999999999999999999975
No 229
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=92.51 E-value=0.29 Score=53.89 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=34.5
Q ss_pred EEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 678 MVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 678 ~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..+++-+ +..|.|+.+|.|.++.+++||.|++|++|++|++
T Consensus 54 G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 54 GKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3444432 5589999999999999999999999999999975
No 230
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.25 E-value=0.32 Score=53.76 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=48.0
Q ss_pred eeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 660 VDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 660 v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
|.-..|+.++....-+....+++-+ +..|.++.+|+|.++.+++|+.|++|++|++|++
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 4444566666555666777887654 6789999999999999999999999999999975
No 231
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=92.11 E-value=0.6 Score=45.09 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=39.4
Q ss_pred cCCcceeeEEecCCCCeeeCCCeEEEEEeee-------eEEEEEcCCCeEEEEEEcCCCCcccCCCe-EEEEe
Q psy15251 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK-------MEYVITSGTSGIIEEIFYAAGQSIQKNQN-LVKIV 718 (720)
Q Consensus 654 ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk-------m~~~i~a~~~G~v~~~~~~~g~~v~~g~~-l~~i~ 718 (720)
--+.|.=-+++|++||+|++||+|+.+.--. +...|.-.-...+..+....| .+..|+. +.+++
T Consensus 97 V~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i~~~g~~~~~~vvitn~~~~~~~~~~~~-~v~~g~~~~~~i~ 168 (169)
T PRK09439 97 VELKGEGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTAGETPVIRVK 168 (169)
T ss_pred cccCCCceEEEecCCCEEeCCCEEEEEcHHHHHhcCCCCeEEEEEeccccccceecccC-ceecCCeEEEEEe
Confidence 4567777889999999999999999887432 222222222222333333445 4666664 55554
No 232
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=92.06 E-value=0.37 Score=53.32 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=45.1
Q ss_pred EEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 662 KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 662 ~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-..|+.++.-..-..-..+++. .+..|.++.+|+|.++.+++||.|++|++|++|++
T Consensus 40 v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 40 VVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 3445555544444556777764 57799999999999999999999999999999975
No 233
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=91.98 E-value=1.1 Score=46.20 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=56.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEE-EEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 9 DSILIANRGEIACRIMRTAKKMGIRVV-SVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 9 ~~iLI~~~G~~a~~iira~~~~G~~~v-~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
++|||+|+..-++.+++.|.+.|+ ++ .|.++--............+.+++ ..+.+.+.+++++.++++|+=.
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~------lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGR------LGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECC------CCCHHHHHHHHHhCCCcEEEEC
Confidence 389999999999999999999998 33 222221111111111112233442 2389999999999998877632
Q ss_pred C-CCCcc-cHHHHHHHHHCCCeEe
Q psy15251 88 Y-GFLSE-NAEFANAVEGNRLIFV 109 (720)
Q Consensus 88 ~-g~lsE-~~~~a~~~~~~gl~~~ 109 (720)
. -|..+ .....++|.+.|++++
T Consensus 74 THPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 74 THPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCchHHHHHHHHHHHHhhcCcceE
Confidence 2 13222 1234566777777665
No 234
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=91.85 E-value=0.27 Score=57.41 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=45.2
Q ss_pred eeecCCcceeeEEecCCCCeeeC----CCeEEEEEeeeeEEEEEcCCCeEEEEEE-------------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKT----GDPIMVIIAMKMEYVITSGTSGIIEEIF------------------------- 701 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~----g~~l~~~eamkm~~~i~a~~~G~v~~~~------------------------- 701 (720)
.|.||+.|+++.+.= +-|.|-+ |+-+++.=+ +..|.||++|+|+.+.
T Consensus 500 ~v~aP~~G~vi~l~~-v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV 575 (648)
T PRK10255 500 ELVSPITGDVVALDQ-VPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTV 575 (648)
T ss_pred EEEecCCcEEEEccc-CcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchh
Confidence 577888888877643 3333332 666666554 4677788888777543
Q ss_pred ----------cCCCCcccCCCeEEEEe
Q psy15251 702 ----------YAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 702 ----------~~~g~~v~~g~~l~~i~ 718 (720)
+++||.|++||+|++++
T Consensus 576 ~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 576 ALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred ccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 77999999999999885
No 235
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.58 E-value=0.23 Score=55.05 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=29.7
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
...|.|+.+|+|.+++|++||.|++||+|+.|+.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 4578899999999999999999999999998863
No 236
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=91.43 E-value=0.22 Score=50.86 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=30.3
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|.||..|+|.++++++||.|..||+|++||
T Consensus 242 ieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 242 NEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 46999999999999999999999999999986
No 237
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.25 E-value=1.1 Score=48.05 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCccccc-ccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKM-ADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~-aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
++-++|+|.|-|..+...++-++.+|.+|++++..++......++ ||+.+.- .|.+.+ +.+++. +|+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~---------~~~~~~-~~~~~~-~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS---------SDSDAL-EAVKEI-ADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEc---------CCchhh-HHhHhh-CcEE
Confidence 356899999999999999999999999999998777766555666 7777641 122222 233332 8999
Q ss_pred EeCCCCCcccHHHHHHHHHCC-CeEeCCCH-HHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEE
Q psy15251 85 HPGYGFLSENAEFANAVEGNR-LIFVGPSS-EAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLM 162 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~g-l~~~Gp~~-~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~Pvv 162 (720)
+-+.+ -.......+.+...| +.++|.+. ..+. .-..+.-++ .++.+.-...+...+.+++.+++.+.+.
T Consensus 234 i~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~--~~~~i~GS~~g~~~d~~e~l~f~~~g~I--- 304 (339)
T COG1064 234 IDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLIL--KEISIVGSLVGTRADLEEALDFAAEGKI--- 304 (339)
T ss_pred EECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhh--cCeEEEEEecCCHHHHHHHHHHHHhCCc---
Confidence 87665 211223345555555 44556442 1111 001111122 2233333333344566677777766552
Q ss_pred EeecCCCCCcceEEeCCHHHHHHHHHHHHH
Q psy15251 163 IKAVRGGGGKGMRIVRDSANFLAQLRSAQR 192 (720)
Q Consensus 163 vKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~ 192 (720)
||... .....+|+.++++++.+
T Consensus 305 -kp~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 305 -KPEIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred -eeeEE-------eeECHHHHHHHHHHHHc
Confidence 22110 24567888888888763
No 238
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=91.19 E-value=0.26 Score=52.80 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=31.1
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..|.++.+|+|.++++++||.|++|++|++|++
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 569999999999999999999999999999975
No 239
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.16 E-value=0.64 Score=43.39 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=46.6
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCC
Q psy15251 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGF 90 (720)
Q Consensus 11 iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~ 90 (720)
++|.|+|..+..+++-++.+||+++++++.++.. ..+++... ...+.+.+...-..-++|+-+.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~----~~~~~~~~----------~~~~~~~~~~~~~~~t~Vv~th~h 66 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF----PEADEVIC----------IPPDDILEDLEIDPNTAVVMTHDH 66 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----TTSSEEEC----------SHHHHHHHHC-S-TT-EEE--S-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc----CCCCccEe----------cChHHHHhccCCCCCeEEEEcCCc
Confidence 6899999999999999999999999997665422 24555332 122333333322233455555554
Q ss_pred CcccHHHHHHHHHCCCeEeC
Q psy15251 91 LSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 91 lsE~~~~a~~~~~~gl~~~G 110 (720)
-.+. .....+.+....|+|
T Consensus 67 ~~D~-~~L~~~l~~~~~YiG 85 (136)
T PF13478_consen 67 ELDA-EALEAALASPARYIG 85 (136)
T ss_dssp CCHH-HHHHHHTTSS-SEEE
T ss_pred hhHH-HHHHHHHcCCCCEEE
Confidence 3333 334444444677776
No 240
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.13 E-value=0.38 Score=51.46 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.7
Q ss_pred EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
+..|.||.+|+|.++.+++||.|.+|++|+.++.
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 5689999999999999999999999999999964
No 241
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.09 E-value=0.2 Score=56.70 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=29.8
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
.|.++..|.|.+++|++||.|++||+|+.|+
T Consensus 61 ~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 61 KIQSTSNNAIKENYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EEEcCCCcEEEEEEcCCCCEecCCCEEEEEC
Confidence 6889999999999999999999999999988
No 242
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=91.05 E-value=0.34 Score=51.12 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=37.0
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeee--EEEEEcCCCeEEEEEEcCCCCc
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM--EYVITSGTSGIIEEIFYAAGQS 707 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm--~~~i~a~~~G~v~~~~~~~g~~ 707 (720)
|+.|.=-.+.|++||.|++||+|++ .|- -.-++||.+|+|+.|+ -|+.
T Consensus 35 ey~gmrp~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~--RG~K 84 (447)
T COG1726 35 EYVGMRPSMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIH--RGEK 84 (447)
T ss_pred cccCCCCcceeccCCeeeccceeee---cccCCCeEEeccCCceEEEee--cccc
Confidence 4555556688999999999999986 333 3568999999999886 4443
No 243
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=90.77 E-value=0.71 Score=48.89 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=54.1
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeE--EEEEeee--eEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPI--MVIIAMK--MEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l--~~~eamk--m~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
...+.||..|. +...++.||.|++||+| ..+-..- -..+|+||.+|+|. .....-.|..|+.|+.+.
T Consensus 220 ~~~~~a~~~G~-~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 220 PEWVRAPAGGL-FEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKVA 290 (292)
T ss_dssp CCEEESSSSEE-EEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEEE
T ss_pred ceeecCCccEE-EEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEEe
Confidence 34789999995 57789999999999999 5555432 23589999999996 456888999999999875
No 244
>PRK04148 hypothetical protein; Provisional
Probab=90.61 E-value=0.78 Score=42.54 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=52.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCC-------------------CcccccccEEEEeCCCCCcccccC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDAD-------------------ALHVKMADEAYRLEGKSSLDTYLN 68 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~-------------------~~~~~~aD~~~~i~~~~~~~~~~~ 68 (720)
.+++|++|-| .+..+++.+.++|++|++++.++..- -....-+|-.|.+.|++ .=
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~-----el 90 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR-----DL 90 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH-----HH
Confidence 3689999999 77888999999999999997655411 11122345556554422 22
Q ss_pred HHHHHHHHHHcCCCEEEeCC
Q psy15251 69 QAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 69 ~~~i~~~a~~~~~daI~pg~ 88 (720)
...|++++++.++|.++-..
T Consensus 91 ~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPL 110 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 45688999999999877543
No 245
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=90.58 E-value=0.84 Score=43.18 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=41.2
Q ss_pred ecCCcceeeEEecCCCCeeeCCCeEEEEEeeee-------EEEEEcCCCeEE-EEEEcCCCCcccCCCeEEEEe
Q psy15251 653 VSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM-------EYVITSGTSGII-EEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 653 ~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm-------~~~i~a~~~G~v-~~~~~~~g~~v~~g~~l~~i~ 718 (720)
+--+.|.--+.+|++||+|++||+|+.+.-.+. ..+|--.-.... .-+....+-.+.+|+.++.+.
T Consensus 81 TV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~~ 154 (156)
T COG2190 81 TVKLNGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLVI 154 (156)
T ss_pred eEEECCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEEe
Confidence 346789999999999999999999998874332 122111111112 112233444788888887653
No 246
>KOG0559|consensus
Probab=90.50 E-value=0.2 Score=52.68 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=31.4
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
-.|.||.+|+|.+++|++||+|+.||.|+.|+--
T Consensus 116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 4689999999999999999999999999999853
No 247
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.40 E-value=2.1 Score=45.84 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=43.7
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 10 SILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
||||.|+ |-++..+++.+.+.|++++++..+..........--+.+. .+..|.+.+.++.+ ++|+|+-.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~-------~Dl~d~~~l~~al~--g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVY-------GDLSLPETLPPSFK--GVTAIIDA 71 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEE-------CCCCCHHHHHHHHC--CCCEEEEC
Confidence 7999995 9999999999999999998886443211100000112222 25567777766654 67877643
No 248
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=90.37 E-value=0.26 Score=55.36 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=36.5
Q ss_pred ceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEE
Q psy15251 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIF 701 (720)
Q Consensus 658 g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~ 701 (720)
|.--+..|++||+|++||+|+.-+. .....|.||.+|+|++|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 4445788999999999999999843 358899999999999884
No 249
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=90.18 E-value=0.4 Score=55.96 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=46.0
Q ss_pred eeecCCcceeeEEecCCCCeeeC----CCeEEEEEeeeeEEEEEcCCCeEEEE---------------------------
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKT----GDPIMVIIAMKMEYVITSGTSGIIEE--------------------------- 699 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~----g~~l~~~eamkm~~~i~a~~~G~v~~--------------------------- 699 (720)
.|.||+.|+++.+. ++-|.|-+ ||-+++.=. +..|.||++|+|+.
T Consensus 480 ~i~aP~~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV 555 (627)
T PRK09824 480 GICSPMTGEVVPLE-QVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTV 555 (627)
T ss_pred hcccccceEEeeHH-HCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhh
Confidence 47788888887763 55565555 666666544 45777777777764
Q ss_pred --------EEcCCCCcccCCCeEEEEe
Q psy15251 700 --------IFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 700 --------~~~~~g~~v~~g~~l~~i~ 718 (720)
.++++||.|++||+|++++
T Consensus 556 ~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 556 KLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred hcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 3556999999999999986
No 250
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=90.17 E-value=0.32 Score=53.04 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=31.9
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
..|.||..|+|.++.+++||.|+.||+|+.++.+
T Consensus 46 ~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~ 79 (371)
T PRK14875 46 NEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA 79 (371)
T ss_pred EEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4699999999999999999999999999999865
No 251
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=90.11 E-value=0.35 Score=52.29 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
...|.||++|.|.+++|++||.|++||+|+.|+
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld 75 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELD 75 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEC
Confidence 347899999999999999999999999999875
No 252
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=90.10 E-value=19 Score=38.25 Aligned_cols=146 Identities=13% Similarity=0.202 Sum_probs=87.9
Q ss_pred HHHHHHHHHhCCcEEEeecCCCCC-------cceEEeCCHHHHHHHHHHHHHHHH---hcCC------------CCcEEE
Q psy15251 148 EILMEQAERIGYPLMIKAVRGGGG-------KGMRIVRDSANFLAQLRSAQRESQ---SAFN------------DSKVLL 205 (720)
Q Consensus 148 ~e~~~~~~~ig~PvvvKp~~g~Gg-------~Gv~~v~~~~el~~~~~~~~~~~~---~~f~------------~~~~lv 205 (720)
+++.++.+++|.-|+.|=...+-- -+...|.+..|+.-.+.....-.. ..|. .-.+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 457778888998899996665522 233468888777666554222111 1110 236788
Q ss_pred eccccCCceEEEEEEEcccccEEEEEeeeccccccceeEEEEcCCCCCCHHHHHHHHHHHH-HHHHHcCCcceeEEEEEE
Q psy15251 206 EKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGV-QVARAVRYHNAGTVEFIM 284 (720)
Q Consensus 206 EeyI~g~~~~~v~v~~d~~G~~v~~~~r~~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~-~i~~alg~~G~~~vEf~~ 284 (720)
-+|..-....|+-+|.- +++++.+..|++.+... + . ...+++...|.+... .+...+.+ .-+.+|+.+
T Consensus 155 rkw~~l~p~~EFRcFV~-~~~LiaISQr~~~~~~~----L---~--~~~~~I~~~I~~F~~~~I~~~~~~-~~~v~DVyi 223 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NRKLIAISQRDLNYYDF----L---E--ELKEEIRSKIQEFFEEHIKPKFPL-DNYVFDVYI 223 (299)
T ss_pred eccccCCccceEEEEEE-CCEEEEEecccccccHH----H---H--HHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEEEE
Confidence 88876555566666663 46888887766521111 0 0 123445555555552 34455655 447899999
Q ss_pred eCCC-CcEEEEEecCCCCcccc
Q psy15251 285 DPSS-GEFYFMEMNTRLQVEHP 305 (720)
Q Consensus 285 ~~~~-g~~~~iEiNpR~~~~~~ 305 (720)
+ .+ +++++||+||=-..+.+
T Consensus 224 ~-~~~~~v~LID~NPf~~~Td~ 244 (299)
T PF07065_consen 224 T-RDKDKVWLIDFNPFGPRTDP 244 (299)
T ss_pred c-CCCCeEEEEEecCCcccCcc
Confidence 9 55 78999999995544333
No 253
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=90.09 E-value=0.31 Score=54.65 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=30.5
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-.+.||..|+|+.|.|++|+.|.+||+|+++|.
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 458999999999999999999999999999873
No 254
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=90.00 E-value=0.65 Score=51.63 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=37.8
Q ss_pred CeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 675 DPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 675 ~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.....+++. -+.+|.++.+|+|.++.+++||.|++||+|++|++
T Consensus 55 ~~~G~v~a~-~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 55 ELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEEEEE-EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 344566764 37889999999999999999999999999999975
No 255
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=89.77 E-value=0.41 Score=49.78 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=28.1
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEE
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ 680 (720)
.|+||+.|.|..+.+++|+.|..|++|+.|
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i 119 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRV 119 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEE
Confidence 479999999999999999999999999886
No 256
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.67 E-value=1.7 Score=53.60 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=90.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHc-CCc------------EEEEeeCCCCCCcccccccE-----EEEeCCCCCcccccC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKM-GIR------------VVSVYSDIDADALHVKMADE-----AYRLEGKSSLDTYLN 68 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~-G~~------------~v~v~s~~d~~~~~~~~aD~-----~~~i~~~~~~~~~~~ 68 (720)
.+|+|||+|.|-++..+++.+.+. +++ .|+|. +.+.... ..+++. .+. -++.|
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~a-~~la~~~~~~~~v~-------lDv~D 638 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKDA-KETVEGIENAEAVQ-------LDVSD 638 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHHH-HHHHHhcCCCceEE-------eecCC
Confidence 478999999999999999999765 333 23332 2221111 112221 122 24678
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHH
Q psy15251 69 QAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEE 148 (720)
Q Consensus 69 ~~~i~~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~ 148 (720)
.+.+.++++. +|+|+....+ .-+..++.+|.++|..++.-+.. .. +-..+.+.++++|+...+... ..-..+
T Consensus 639 ~e~L~~~v~~--~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~-~~---e~~~L~e~Ak~AGV~~m~e~G-lDPGid 710 (1042)
T PLN02819 639 SESLLKYVSQ--VDVVISLLPA-SCHAVVAKACIELKKHLVTASYV-SE---EMSALDSKAKEAGITILCEMG-LDPGID 710 (1042)
T ss_pred HHHHHHhhcC--CCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCC-HH---HHHHHHHHHHHcCCEEEECCc-cCHHHH
Confidence 8888777664 8888866543 23578999999999998865422 11 223567888999999887653 122334
Q ss_pred H--HHHHHHHh----CCcEEEeecCCC
Q psy15251 149 I--LMEQAERI----GYPLMIKAVRGG 169 (720)
Q Consensus 149 e--~~~~~~~i----g~PvvvKp~~g~ 169 (720)
. +.+.+++. |-...++...|+
T Consensus 711 ~~lA~~~Id~~~~~~GkI~s~~s~~GG 737 (1042)
T PLN02819 711 HMMAMKMIDDAHERGGKVKSFTSYCGG 737 (1042)
T ss_pred HHHHHHHHHhhcccCCcEEEEEEEEcC
Confidence 4 33444443 666667766665
No 257
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.61 E-value=0.55 Score=53.24 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=31.5
Q ss_pred EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|.++..|+|.+|+|++||.|++|++|++|++
T Consensus 59 ~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 59 LSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred eEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 4578999999999999999999999999999975
No 258
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.61 E-value=0.47 Score=53.16 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=30.7
Q ss_pred EEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 688 VITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 688 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.|.|+.+|+|.++.+++||.|++|++|++|++
T Consensus 60 ~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 60 TIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred EEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 89999999999999999999999999999975
No 259
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=89.57 E-value=0.36 Score=54.05 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=31.2
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
..|.||..|+|.+|++++||.|..||+|+.|+.
T Consensus 135 ~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 135 IDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 469999999999999999999999999999975
No 260
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.23 E-value=0.52 Score=52.59 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=34.1
Q ss_pred EEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 680 IIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 680 ~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
|...+-...|.||.+|+|++++|++||.|++|++|++++.
T Consensus 37 v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 37 VVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred EEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 3344455668899999999999999999999999999974
No 261
>KOG3373|consensus
Probab=89.06 E-value=0.26 Score=46.16 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=36.9
Q ss_pred cCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCC
Q psy15251 665 VQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704 (720)
Q Consensus 665 v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~ 704 (720)
-++|..|.+|+.+..+|+-|---+|.+|.+|+|++|+-+-
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence 4788999999999999999999999999999999998653
No 262
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=88.99 E-value=0.65 Score=54.38 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.2
Q ss_pred EEEcCCCCcccCCCeEEEEe
Q psy15251 699 EIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 699 ~~~~~~g~~v~~g~~l~~i~ 718 (720)
+.++++||.|++||+|++++
T Consensus 547 ~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 547 EILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred EEEecCcCEEcCCCEEEEec
Confidence 45678999999999999986
No 263
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=88.87 E-value=3.9 Score=42.20 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDID 42 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d 42 (720)
+..+++|.|+|.++..+++-++.+||+|+++++.++
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 456999999999999999999999999999975544
No 264
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=88.80 E-value=0.38 Score=50.02 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=21.0
Q ss_pred EEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 688 VITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 688 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.|+||++|+|..+.+.+|+.|.+|++|+.|.
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 5667777777666666777777776666654
No 265
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=88.70 E-value=0.4 Score=56.74 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=38.3
Q ss_pred eeecCCcc---eeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEE
Q psy15251 651 KVVSPMPG---MVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIF 701 (720)
Q Consensus 651 ~v~ap~~g---~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~ 701 (720)
.+.=||.. .--+..|++||+|.+||+|+.-+. -+...|.||.+|+|+.|.
T Consensus 36 ~~~ipl~qhiG~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 36 RLVIPLKQHIGAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred EEEEECccCCCCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 34444433 335688999999999999996543 257899999999999874
No 266
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=88.37 E-value=0.79 Score=53.28 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=31.6
Q ss_pred EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|.||..|+|.++.+++||.|++|++|++++.
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 4569999999999999999999999999999974
No 267
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=88.11 E-value=0.41 Score=53.42 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=35.6
Q ss_pred eEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEE
Q psy15251 661 DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIF 701 (720)
Q Consensus 661 ~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~ 701 (720)
....|++||+|.+||+|..=|. -...+.||.+|+|++|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3568999999999999999887 78899999999999997
No 268
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=88.04 E-value=0.92 Score=52.81 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=31.3
Q ss_pred EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...|.||.+|+|.++.+++||.|++|++|++++.
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3469999999999999999999999999999874
No 269
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=87.98 E-value=0.54 Score=52.13 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=31.6
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
..|.||..|+|.++++++||.|..||+|++|+.-
T Consensus 88 ~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 88 VDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred EEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 4699999999999999999999999999999853
No 270
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=87.97 E-value=1.3 Score=51.97 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=42.9
Q ss_pred cCCcceeeEEecCCCCeeeCCCeEEEEEeeee-------EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM-------EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 654 ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm-------~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
--+.|+=-+.+|++||+|++||+|+.+.--++ ..++--.-......+....+..|..|+.+.++
T Consensus 539 v~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 539 VELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred hccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 44566667889999999999999999874332 33333222233334445566779999988764
No 271
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=87.66 E-value=2.1 Score=43.36 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=76.1
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCc-ccc-cccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 11 ILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADAL-HVK-MADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 11 iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~-~~~-~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
|||+|. |.++..+++++.+.|+++.++..+.+.... ..+ .--+.+. .+|.|.+.|.++.+ ++|+|+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~-------~d~~~~~~l~~al~--g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVE-------ADYDDPESLVAALK--GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEE-------S-TT-HHHHHHHHT--TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEee-------cccCCHHHHHHHHc--CCceEEee
Confidence 688985 999999999999999999998765522111 111 1123333 37788888888776 77777755
Q ss_pred CCCC--cc---cHHHHHHHHHCCCeEeCCC-----H-------HHHHHhcCHHHHHHHHHHCCCCC
Q psy15251 88 YGFL--SE---NAEFANAVEGNRLIFVGPS-----S-------EAIRNMGIKSTSKEIMIKAEVPV 136 (720)
Q Consensus 88 ~g~l--sE---~~~~a~~~~~~gl~~~Gp~-----~-------~~i~~~~DK~~~r~~l~~~Gvp~ 136 (720)
.+.. .+ ...+.+++.+.|+.++-++ . -....+..|....+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 5432 11 2356778888887654322 1 13555678889999999998876
No 272
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=87.02 E-value=0.71 Score=42.76 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=23.0
Q ss_pred cCCcceeeEEecCCCCeeeCCCeEEEEEeee
Q psy15251 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK 684 (720)
Q Consensus 654 ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk 684 (720)
.-+.|+--+++|++||+|++||+|+.+.-.+
T Consensus 79 v~L~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 79 VKLNGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp GGGTTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred hhcCCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 3466777899999999999999999887543
No 273
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=86.83 E-value=0.82 Score=51.03 Aligned_cols=34 Identities=18% Similarity=0.492 Sum_probs=31.3
Q ss_pred EEEEEcCCCeEEEEEE-cCCCCcccCCCeEEEEec
Q psy15251 686 EYVITSGTSGIIEEIF-YAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 686 ~~~i~a~~~G~v~~~~-~~~g~~v~~g~~l~~i~~ 719 (720)
+..|.|+.+|.|.++. +.+||.|++||+|++|..
T Consensus 123 ~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 123 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred eEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 4579999999999998 899999999999999974
No 274
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=86.82 E-value=2.6 Score=38.37 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=37.3
Q ss_pred CCeeecCCcceeeEEecCCCCe-e--eCCCeE-EEE--EeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQA-V--KTGDPI-MVI--IAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~-V--~~g~~l-~~~--eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
.+.|.||..|+|..+.-.--.- + +.|-.+ +-+ ++-+| .|.=-+.++++||.|.+|++|+++.
T Consensus 35 ~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L--------~G~gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 35 DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeec--------CCCceEEEecCCCEEcCCCEEEEEc
Confidence 3579999999998774321111 1 112222 111 22222 2333467789999999999999886
No 275
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.72 E-value=1.7 Score=44.31 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccc--cccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 9 DSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVK--MADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 9 ~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~--~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
++++|+|.|..+..+++.+.+.|+.+++++.+++....... +.-..+.. +-.+.+ +++-+--.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~g-------d~t~~~-~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIG-------DATDED-VLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEe-------cCCCHH-HHHhcCCCcCCEEEE
Confidence 38999999999999999999999999999776654333222 33344432 223433 344444456888886
Q ss_pred CCCCCcccHHHHHHHHH-CCCe
Q psy15251 87 GYGFLSENAEFANAVEG-NRLI 107 (720)
Q Consensus 87 g~g~lsE~~~~a~~~~~-~gl~ 107 (720)
..+--..|..++.+..+ .|.+
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVP 94 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCC
Confidence 66532233333433323 4544
No 276
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.65 E-value=1.5 Score=39.78 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=47.1
Q ss_pred CCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEE-EEcCCCeEEEEEE
Q psy15251 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYV-ITSGTSGIIEEIF 701 (720)
Q Consensus 649 ~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~-i~a~~~G~v~~~~ 701 (720)
...+.-|.-|-++-.-+..|++|.+|++++-+.+-|-+.- +++|.+|+|.-+.
T Consensus 91 d~ll~iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 91 DELLLIPVEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred CEEEEEecCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 3467889999999999999999999999999999999865 8899999997653
No 277
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=86.47 E-value=1.7 Score=50.80 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeee-------EEEEEcCCCeEEEEEEcCCCCcccCCCeEEEE
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM-------EYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm-------~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 717 (720)
-+.|+=-+.+|++||+|++||+|+.++--+. ..++--.-......+....+..|..|+.+..+
T Consensus 556 ~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 556 KLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred hcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 4455556888999999999999999874322 12221111112223334456679999988765
No 278
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=86.25 E-value=7.2 Score=41.32 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=66.9
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEE-EEeeC--CCCC---Ccccc------c--ccEEEEeCCCCCccc
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVV-SVYSD--IDAD---ALHVK------M--ADEAYRLEGKSSLDT 65 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v-~v~s~--~d~~---~~~~~------~--aD~~~~i~~~~~~~~ 65 (720)
|||--+...||+|-|- |.++.++++.+.+.|++.+ .|.+. .+.- ..+.. - .|-++..-|
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp------ 74 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVP------ 74 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcC------
Confidence 6666666789999994 6789999999999999743 45332 1110 00100 1 344443211
Q ss_pred ccCHHHHHHHHHHcCCCE-EEeCCCCCccc-HHHHHHHHHCCCeEeCCCHHHHHHh
Q psy15251 66 YLNQAKILDIAVRSQCQA-IHPGYGFLSEN-AEFANAVEGNRLIFVGPSSEAIRNM 119 (720)
Q Consensus 66 ~~~~~~i~~~a~~~~~da-I~pg~g~lsE~-~~~a~~~~~~gl~~~Gp~~~~i~~~ 119 (720)
-.....+++-|-+.++.+ |+...||.-++ ..+.+.+.+.|++++||+---+-..
T Consensus 75 ~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~ 130 (291)
T PRK05678 75 PPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITP 130 (291)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCccccc
Confidence 122334445555667765 55566664321 2677788889999999886554433
No 279
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=86.18 E-value=1.9 Score=50.34 Aligned_cols=74 Identities=36% Similarity=0.575 Sum_probs=70.6
Q ss_pred CCCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 646 LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 646 ~~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
..+++.|-|||||+|+++.|+.||.|++||+|+++||||||..|.||++|+|.++.|+.||+|+.|++|++++.
T Consensus 1076 ~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~~ 1149 (1149)
T COG1038 1076 PGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVEE 1149 (1149)
T ss_pred CCCccccCCCCCCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEccC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999998863
No 280
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=86.03 E-value=1.2 Score=40.82 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=26.2
Q ss_pred ecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 653 VSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 653 ~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
+.-+.|+=-+++|++||+|++||+|+.+.-
T Consensus 74 Tv~l~g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 74 TVKLNGEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred eeecCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 456788889999999999999999998873
No 281
>KOG1057|consensus
Probab=85.84 E-value=0.41 Score=55.17 Aligned_cols=188 Identities=16% Similarity=0.154 Sum_probs=101.5
Q ss_pred HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCC--CCCHHHHHHHHH----------HhCCcEEEee
Q psy15251 98 ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGE--DQNEEILMEQAE----------RIGYPLMIKA 165 (720)
Q Consensus 98 a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~--~~s~~e~~~~~~----------~ig~PvvvKp 165 (720)
|.+..++.-||+-++-..-..+.|.-...++|++.|||+|++.... ..+ ++...+.+ .+.-|+|=||
T Consensus 107 AiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn-~~~~~lie~eD~vEVnGevf~KPFVEKP 185 (1018)
T KOG1057|consen 107 AVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPN-PKLCNLIEGEDHVEVNGEVFQKPFVEKP 185 (1018)
T ss_pred HHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCC-hHHhhhhcCCCeEEEcceeccCCcccCC
Confidence 4455666678888898888899999999999999999999876411 112 22222322 1346999999
Q ss_pred cCCCCCcceEEeC--CH-HHHHHHHHHHHHHHHhc------CCCCcEEEeccccCC-ceEEEEEEEcccccEEEEEeee-
Q psy15251 166 VRGGGGKGMRIVR--DS-ANFLAQLRSAQRESQSA------FNDSKVLLEKYIQSP-RHIEVQIIGDRYGNYVYLYERD- 234 (720)
Q Consensus 166 ~~g~Gg~Gv~~v~--~~-~el~~~~~~~~~~~~~~------f~~~~~lvEeyI~g~-~~~~v~v~~d~~G~~v~~~~r~- 234 (720)
++|-- ..|++-. +. .--++.|.++-+.+-.. -..+.++-|+|++.+ ..+-|-.++- +..|.-.|.
T Consensus 186 Vs~ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp---~YaHAEaRKS 261 (1018)
T KOG1057|consen 186 VSAED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGP---DYAHAEARKS 261 (1018)
T ss_pred CCccc-ccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCc---chhhhhhccC
Confidence 87541 1111110 00 01122232222111000 013689999999742 2233322221 222222221
Q ss_pred ----ccccccceeEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecC
Q psy15251 235 ----CSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298 (720)
Q Consensus 235 ----~s~~r~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNp 298 (720)
-.+.|....---..|. .++++ =...|.+++-|++- -++.+|.+.. +|.=|++.+|.
T Consensus 262 PvvDGkV~Rns~GKEvRYpv-~Ls~~----EK~iA~KVciAF~Q-~VCGFDLLRa--~G~SYVcDVNG 321 (1018)
T KOG1057|consen 262 PVVDGKVERNSDGKEVRYPV-ILNSS----EKQIARKVCIAFKQ-TVCGFDLLRA--NGKSYVCDVNG 321 (1018)
T ss_pred ccccceeeecCCCceeecee-ecChh----hHHHHhHHHhhccc-cccchHHhhc--CCceEEEeccc
Confidence 1122221101112343 34432 24567788877766 4566787776 79999999996
No 282
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=85.52 E-value=2.4 Score=42.45 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
-+++||+|+|..|.+-++.+.+.|.+++++.++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 479999999999999999999999998888543
No 283
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=85.34 E-value=3.3 Score=45.24 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=57.4
Q ss_pred CCEEEEEcCcHH-----HHHHHHHHHHcCCcEEEEeeCCCCCCccccc-ccEEEEeCCCCCcc--c----------ccCH
Q psy15251 8 LDSILIANRGEI-----ACRIMRTAKKMGIRVVSVYSDIDADALHVKM-ADEAYRLEGKSSLD--T----------YLNQ 69 (720)
Q Consensus 8 ~~~iLI~~~G~~-----a~~iira~~~~G~~~v~v~s~~d~~~~~~~~-aD~~~~i~~~~~~~--~----------~~~~ 69 (720)
||||+|+++|.. |+.+++.+++.|+++..+.++..-....... --..+.++...... + ....
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 679999998865 8899999999999998887544322111111 11122232111110 1 1122
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 70 AKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 70 ~~i~~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
-....+.++.++|+|+..-|+.+ ....-+....++|.+-
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s--~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVS--VPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhh--HHHHHHHHHcCCCEEE
Confidence 23456789999999985444443 2333445556666553
No 284
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=85.31 E-value=2.2 Score=50.09 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=38.1
Q ss_pred CCcceeeEEecCCCCeeeCCCeEEEEEeeee-------EEEEEcCCCeEEEEEEcCCCCcccCCC-eEEEEe
Q psy15251 655 PMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM-------EYVITSGTSGIIEEIFYAAGQSIQKNQ-NLVKIV 718 (720)
Q Consensus 655 p~~g~v~~~~v~~G~~V~~g~~l~~~eamkm-------~~~i~a~~~G~v~~~~~~~g~~v~~g~-~l~~i~ 718 (720)
-+.|+=-+.+|++||+|++||+|+.+.--+. ..+|.-.-......+.......|..|+ ++++++
T Consensus 576 ~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtN~~~~~~~~~~~~~~v~~g~~~~~~i~ 647 (648)
T PRK10255 576 ALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLIIKAQGHVVAGQTPLYEIK 647 (648)
T ss_pred ccCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCceecCCceEEEEc
Confidence 4455556788999999999999999874332 222222112222223333444566665 677765
No 285
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=85.10 E-value=3.9 Score=42.97 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=52.5
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccc-cEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 10 SILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMA-DEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 10 ~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~a-D~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
+|||.| .|-|+...+..+.+.|+++|+++.-.......+.-. -+++. .+..|.+.+.++..++++|+|+-
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~-------gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYE-------GDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEE-------eccccHHHHHHHHHhcCCCEEEE
Confidence 789987 589999999999999999999965444433333221 13333 27788899999999999999884
No 286
>KOG2157|consensus
Probab=85.02 E-value=7.3 Score=44.17 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeccccCC
Q psy15251 158 GYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSP 212 (720)
Q Consensus 158 g~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~~lvEeyI~g~ 212 (720)
....++||....-|+|++++.+.+++.........+.. --.++.+.+++||+.+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s-~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFIS-ENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccccc-ccccccceeeeeccCc
Confidence 45799999999999999999999998877643221100 0015788999999864
No 287
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.86 E-value=6 Score=38.20 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=48.3
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 11 ILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 11 iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
|||+|+ |.++..+++.|.+.|++++++..++..... ...-.+.. -+..|.+.+.++.+ ++|+|+-..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~------~d~~d~~~~~~al~--~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQ------GDLFDPDSVKAALK--GADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEE------SCTTCHHHHHHHHT--TSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccce------eeehhhhhhhhhhh--hcchhhhhhh
Confidence 789995 999999999999999999998655432211 12222222 26678888888776 7898886554
No 288
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=84.74 E-value=2.9 Score=41.99 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=42.2
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEee--eeEEEEEcCCCeEEEEEEcCCCCcccC
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM--KMEYVITSGTSGIIEEIFYAAGQSIQK 710 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam--km~~~i~a~~~G~v~~~~~~~g~~v~~ 710 (720)
.+++.+.||..|+|..+.--..+ +-..+.+.+.=.| ...|.++||++|+|.++...+|.....
T Consensus 51 ~~~~~i~SPaDG~v~~i~~v~d~-~~~~~~~~i~i~lsp~d~H~~~aP~~G~V~~~~~~~G~~~~~ 115 (206)
T PRK05305 51 TDDGLVVSPADGKVVVIEEVVPP-YGDEPRLRISIFMSVFNVHVNRAPVSGTVTKVEYRPGKFLNA 115 (206)
T ss_pred CCCCEEEeCCCcEEEEEEEECCC-ccCCceEEEEEEECcccCCEEEeCccCEEEEEEEECCeEEec
Confidence 35567999999999888543332 2222222222222 345889999999999999999985543
No 289
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=84.40 E-value=1.4 Score=38.28 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=26.6
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhcceEecc
Q psy15251 395 SKLVVWDENRTLALNKMKQALSQYQIAGL 423 (720)
Q Consensus 395 a~vi~~g~~~~ea~~~~~~al~~~~i~G~ 423 (720)
-.+++.|.|.++|.++++++++.+.+.|.
T Consensus 54 l~v~~~g~tl~eA~~~ay~~i~~I~~~g~ 82 (93)
T PF02843_consen 54 LTVVALGDTLEEAREKAYEAIEKIDFPGM 82 (93)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTSB-TTE
T ss_pred EEEEEEcCCHHHHHHHHHHHHhccCCCCC
Confidence 88999999999999999999999999983
No 290
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=84.36 E-value=2.7 Score=36.29 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=35.7
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEe-eeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA-MKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea-mkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
..|.||++|+|+.+.-.. ...-.++|+- ..+.. +.. -+..+.+++||.|++|+.|..+.
T Consensus 14 ~~V~A~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~-~y~----~l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 14 TPVYAPADGKVVFVGEDP-----GYGNYVIIQHGNGYIT-VYG----HLDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp -EEEESSSEEEEEEEEET-----TTEEEEEEEETTSEEE-EEE----EESEESS-TTSEE-TTCEEEEEB
T ss_pred CEEEeCccEEEEEEEecc-----CCccEEEEEeCCcCCE-EEe----ccccccceecccccCCCEEEecC
Confidence 479999999997775422 2233444443 22222 222 24556688999999999998875
No 291
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.15 E-value=3.1 Score=52.46 Aligned_cols=73 Identities=42% Similarity=0.715 Sum_probs=70.1
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
.....|.|||||+|++|+|++||.|++||+|+++||||||++|+||.+|+|+++.+++|+.|..|++|++|++
T Consensus 1074 ~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1074 GNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999974
No 292
>PLN00016 RNA-binding protein; Provisional
Probab=83.67 E-value=8.8 Score=42.19 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCCCEEEEE----cC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc-----c---ccc--cEEEEeCCCCCcccccCHH
Q psy15251 6 CVLDSILIA----NR-GEIACRIMRTAKKMGIRVVSVYSDIDADALH-----V---KMA--DEAYRLEGKSSLDTYLNQA 70 (720)
Q Consensus 6 ~~~~~iLI~----~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~-----~---~~a--D~~~~i~~~~~~~~~~~~~ 70 (720)
.++++|||+ |+ |-++..+++.+.+.|++|+++.......... . .+. .-.+. ..|..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v---------~~D~~ 120 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTV---------WGDPA 120 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEE---------EecHH
Confidence 356799999 75 8899999999999999999886543221100 0 000 00111 12444
Q ss_pred HHHHHHHHcCCCEEEeCCCCCcc-cHHHHHHHHHCCC-eEeCCC
Q psy15251 71 KILDIAVRSQCQAIHPGYGFLSE-NAEFANAVEGNRL-IFVGPS 112 (720)
Q Consensus 71 ~i~~~a~~~~~daI~pg~g~lsE-~~~~a~~~~~~gl-~~~Gp~ 112 (720)
.+.++....++|+|+-..+...+ ...+.++|.+.|+ .|+-.+
T Consensus 121 d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S 164 (378)
T PLN00016 121 DVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS 164 (378)
T ss_pred HHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 44444445678988865442111 2245667777787 354333
No 293
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=83.40 E-value=2.6 Score=35.06 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=28.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|++|+|+|.+++.++..++++|.++.++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEecc
Confidence 6899999999999999999999999888543
No 294
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=83.38 E-value=1.5 Score=34.77 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=28.3
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ 680 (720)
..+.+|..|++.++++++|+.|..|++|+.+
T Consensus 44 ~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3689999999999999999999999999864
No 295
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=83.34 E-value=1.4 Score=47.79 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=29.7
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEE
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~e 681 (720)
..|.+.++|.|++|+|+.+|.|++||+|+.|+
T Consensus 54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD 85 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRID 85 (352)
T ss_pred EEEcCcCceEEEEEEecCCCEecCCCeEEEEC
Confidence 57889999999999999999999999999885
No 296
>PRK06988 putative formyltransferase; Provisional
Probab=83.21 E-value=2 Score=46.04 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCC
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADA 45 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~ 45 (720)
||++.|.+..+..+++++.+.|+++++|.+.+|.+.
T Consensus 4 kIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~ 39 (312)
T PRK06988 4 RAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPT 39 (312)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 899999999999999999999999999998876653
No 297
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=83.16 E-value=1.3 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=32.3
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK 684 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk 684 (720)
..|.||..|+|.++++++||.|..|++|+.||...
T Consensus 46 ~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 46 LEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999999999998643
No 298
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=83.15 E-value=5.8 Score=43.79 Aligned_cols=33 Identities=30% Similarity=0.674 Sum_probs=28.8
Q ss_pred CCCCeeecCCcceeeEEe-------cCCCCeeeCCCeEEE
Q psy15251 647 SDPSKVVSPMPGMVDKVL-------VQPGQAVKTGDPIMV 679 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~-------v~~G~~V~~g~~l~~ 679 (720)
..+..|.|-..|.|.++. |++||.|++||.|+.
T Consensus 184 ~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 184 AEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 456789999999998874 889999999999984
No 299
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.14 E-value=1.2 Score=52.26 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=69.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
..+++|+|.|..+..+++.+++.|+++++++.|++.-....+ .+..+..+ |..+ ..+++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~G------Dat~-~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYG------DATQ-LELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEe------eCCC-HHHHHhcCCccCCEEEEE
Confidence 358999999999999999999999999999877654332222 23223333 2233 345555666678888766
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPV 136 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~ 136 (720)
.+...+|......+++. .|+...+.+++|....+ .++++|+..
T Consensus 472 ~~d~~~n~~i~~~~r~~-----~p~~~IiaRa~~~~~~~-~L~~~Ga~~ 514 (601)
T PRK03659 472 CNEPEDTMKIVELCQQH-----FPHLHILARARGRVEAH-ELLQAGVTQ 514 (601)
T ss_pred eCCHHHHHHHHHHHHHH-----CCCCeEEEEeCCHHHHH-HHHhCCCCE
Confidence 65322233333333332 24444455565654444 445567664
No 300
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.90 E-value=2.2 Score=49.76 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=66.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
..+++|+|.|..+..+++.+++.|+++++++.|++.-....+. +..+..+ +..+ +.+++-+.-.++|+++..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~G------D~~~-~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLG------NAAN-EEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEc------CCCC-HHHHHhcCccccCEEEEE
Confidence 4689999999999999999999999999997766543222222 3223333 3344 344555666678877755
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPV 136 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~ 136 (720)
.+.-.+|......+.+.. |....+.+..|.. -.+.++++|+..
T Consensus 489 ~~~~~~~~~iv~~~~~~~-----~~~~iiar~~~~~-~~~~l~~~Gad~ 531 (558)
T PRK10669 489 IPNGYEAGEIVASAREKR-----PDIEIIARAHYDD-EVAYITERGANQ 531 (558)
T ss_pred cCChHHHHHHHHHHHHHC-----CCCeEEEEECCHH-HHHHHHHcCCCE
Confidence 432223332222222211 2223333344543 344456788765
No 301
>PRK05993 short chain dehydrogenase; Provisional
Probab=82.05 E-value=4.7 Score=42.10 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=29.3
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|+|++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4578999996 889999999999999998888644
No 302
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.94 E-value=5.1 Score=40.03 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
..+++||+|+|.+|.+.++.+.+.|.+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 35799999999999999999999999888774
No 303
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.79 E-value=21 Score=36.00 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 16 RGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 16 ~G~~a~~iira~~~~G~~~v~v~ 38 (720)
..+-+..+++++.+-|++++=+.
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit 45 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVT 45 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE
Confidence 45679999999999999988773
No 304
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=81.78 E-value=1.4 Score=36.61 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=20.0
Q ss_pred ecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 653 VSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 653 ~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
.-|..| +.++++.||.|++||+|+.|=+
T Consensus 28 ID~~vG--i~l~~k~Gd~V~~Gd~l~~i~~ 55 (75)
T PF07831_consen 28 IDPAVG--IELHKKVGDRVEKGDPLATIYA 55 (75)
T ss_dssp --TT-E--EEESS-TTSEEBTTSEEEEEEE
T ss_pred cCcCcC--eEecCcCcCEECCCCeEEEEEc
Confidence 334555 4588999999999999999855
No 305
>PRK07060 short chain dehydrogenase; Provisional
Probab=81.75 E-value=4.3 Score=41.14 Aligned_cols=82 Identities=20% Similarity=0.123 Sum_probs=49.2
Q ss_pred CCCccCC-CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc-cccccEEEEeCCCCCcccccCHHHHHHHHH
Q psy15251 1 MTIASCV-LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALH-VKMADEAYRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 1 m~~~~~~-~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~-~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
|+|...+ .+++||.|. |.++..+++.+.+.|+++++++.+....... .......+.. +..+.+.+.++..
T Consensus 1 ~~~~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~v~~~~~ 73 (245)
T PRK07060 1 MNMAFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRL-------DVGDDAAIRAALA 73 (245)
T ss_pred CCcccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEe-------cCCCHHHHHHHHH
Confidence 6655433 478999986 7899999999999999988875432211000 0011122322 3345555666655
Q ss_pred Hc-CCCEEEeCCC
Q psy15251 78 RS-QCQAIHPGYG 89 (720)
Q Consensus 78 ~~-~~daI~pg~g 89 (720)
.. ++|+|+-..|
T Consensus 74 ~~~~~d~vi~~ag 86 (245)
T PRK07060 74 AAGAFDGLVNCAG 86 (245)
T ss_pred HhCCCCEEEECCC
Confidence 53 4788875544
No 306
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=81.10 E-value=1.4 Score=47.31 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=29.9
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
.+.++..|.|.+++|++||.|++||+|+.++.
T Consensus 68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 47788999999999999999999999999986
No 307
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=81.08 E-value=19 Score=39.84 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCc------cc-ccc-cEEEEeCCCCCcccccCHHHHHHHHH
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADAL------HV-KMA-DEAYRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~------~~-~~a-D~~~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
..++|||.|+ |.++..+++.+.+.|++++++.-+...... .. ... -+.+. .+..|.+.+.++++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~-------~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVF-------GDVTDADSLRKVLF 131 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEE-------eeCCCHHHHHHHHH
Confidence 3568999985 899999999999999999888644322110 00 000 12222 26677888888887
Q ss_pred Hc--CCCEEEeCC
Q psy15251 78 RS--QCQAIHPGY 88 (720)
Q Consensus 78 ~~--~~daI~pg~ 88 (720)
.. ++|.|+-..
T Consensus 132 ~~~~~~D~Vi~~a 144 (390)
T PLN02657 132 SEGDPVDVVVSCL 144 (390)
T ss_pred HhCCCCcEEEECC
Confidence 65 689887543
No 308
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=80.84 E-value=25 Score=36.06 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
+|||.| .|-++..+++.+.+.|++++++..+++...... ..-.+.. .++.+.+.+...++......++.+.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~------~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVL------GDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEE------eccCCHhHHHHHhccccEEEEEecc
Confidence 688888 488899999999999999999977665444333 2222222 3677877777777554443344442
Q ss_pred CC-----Cc-ccHHHHHHHHHCC--Ce------EeCCC-HHHHHHhcCHHHHHHHHHHCCCCC----CCcccCCCCCHHH
Q psy15251 89 GF-----LS-ENAEFANAVEGNR--LI------FVGPS-SEAIRNMGIKSTSKEIMIKAEVPV----IPGYHGEDQNEEI 149 (720)
Q Consensus 89 g~-----ls-E~~~~a~~~~~~g--l~------~~Gp~-~~~i~~~~DK~~~r~~l~~~Gvp~----p~~~~~~~~s~~e 149 (720)
.. .. +...+....++.+ .. .++.. ........+|....+.+...|++. ++++. ......
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~t~lr~~~~~--~~~~~~ 151 (275)
T COG0702 74 LDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPYTTLRRAAFY--LGAGAA 151 (275)
T ss_pred cccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCeEEEecCeee--eccchh
Confidence 11 11 1112233444433 21 23332 244555678999999999999993 23332 222222
Q ss_pred HHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHH
Q psy15251 150 LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQ 191 (720)
Q Consensus 150 ~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~ 191 (720)
....+...+.|++..+.. ..-.-..+++..++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~------~~~~i~~~d~a~~~~~~l 187 (275)
T COG0702 152 FIEAAEAAGLPVIPRGIG------RLSPIAVDDVAEALAAAL 187 (275)
T ss_pred HHHHHHhhCCceecCCCC------ceeeeEHHHHHHHHHHHh
Confidence 233444455565555443 222234456665555443
No 309
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=80.64 E-value=3.9 Score=43.91 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=35.0
Q ss_pred eEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 676 PIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 676 ~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
....+++ .-...|.++..|.|.++++++||.|.+|++|+.+++
T Consensus 57 ~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 57 APGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 3444554 333478888999999999999999999999999975
No 310
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=80.58 E-value=2.1 Score=47.63 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=31.9
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
..|.||..|+|.++++++||.|..|++|++|+.-
T Consensus 46 ~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 46 MEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred EEecCCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence 4689999999999999999999999999999974
No 311
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=80.54 E-value=1.9 Score=47.80 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=31.9
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
..+.||..|+|.++++++|+.|+.|++|+.|+..
T Consensus 44 ~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 44 LEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4699999999999999999999999999999864
No 312
>PLN02240 UDP-glucose 4-epimerase
Probab=80.41 E-value=8.8 Score=41.42 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCc-cccc-------ccEEEEeCCCCCcccccCHHH
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADAL-HVKM-------ADEAYRLEGKSSLDTYLNQAK 71 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~-~~~~-------aD~~~~i~~~~~~~~~~~~~~ 71 (720)
|||. .++|||.|+ |.++..+++.+.+.|+++++++........ ..+. ......+ .-+..+.+.
T Consensus 1 ~~~~---~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~ 72 (352)
T PLN02240 1 MSLM---GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-----KVDLRDKEA 72 (352)
T ss_pred CCCC---CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEE-----ecCcCCHHH
Confidence 5553 469999985 899999999999999998887422111100 0000 0011111 125567777
Q ss_pred HHHHHHHcCCCEEEeC
Q psy15251 72 ILDIAVRSQCQAIHPG 87 (720)
Q Consensus 72 i~~~a~~~~~daI~pg 87 (720)
+.++..+.++|.|+-.
T Consensus 73 l~~~~~~~~~d~vih~ 88 (352)
T PLN02240 73 LEKVFASTRFDAVIHF 88 (352)
T ss_pred HHHHHHhCCCCEEEEc
Confidence 7777776788877643
No 313
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=80.22 E-value=24 Score=40.59 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecC
Q psy15251 255 SEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298 (720)
Q Consensus 255 ~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNp 298 (720)
++...+|.+.+.++-+.+| -+-.+||-+. +|++|++-.-|
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai~--~g~L~iLQaRp 296 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTVE--SGKLWLLQTRS 296 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEEE--CCEEEEEEeec
Confidence 4677888888888877766 5889999997 68899987654
No 314
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=80.19 E-value=4.9 Score=45.04 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=58.3
Q ss_pred CCCccCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccc-cccEE--EEeCCCCCcccccCHHHHHHHHH
Q psy15251 1 MTIASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVK-MADEA--YRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~-~aD~~--~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
|+.... ++||+|+|=|-.++.+++.+++.|.++++.+..++....... ...+. +..+ . .+. ..
T Consensus 1 ~~~~~~-~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g------~-~~~------~~ 66 (448)
T COG0771 1 MMEDFQ-GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELG------S-HDD------ED 66 (448)
T ss_pred Cccccc-CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecC------c-cch------hc
Confidence 344444 889999999999999999999999998888655554211111 11111 2111 0 110 22
Q ss_pred HcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 78 RSQCQAIHPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 78 ~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
-..+|.|+...|.-..++ ......+.|++++|
T Consensus 67 ~~~~d~vV~SPGi~~~~p-~v~~A~~~gi~i~~ 98 (448)
T COG0771 67 LAEFDLVVKSPGIPPTHP-LVEAAKAAGIEIIG 98 (448)
T ss_pred cccCCEEEECCCCCCCCH-HHHHHHHcCCcEEe
Confidence 345777876666544444 45667778888774
No 315
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=80.14 E-value=14 Score=37.17 Aligned_cols=89 Identities=7% Similarity=0.084 Sum_probs=56.4
Q ss_pred CCEEEEEcCcHHHHHHHHH--HHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 8 LDSILIANRGEIACRIMRT--AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira--~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
.++++|+|.|.++..+++. ....|++++++.++. ...... .... +.+ ...+.+.+++++.++|.++
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d-~~~~~~-~i~g-~~v---------~~~~~l~~li~~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD-PEKIGT-KIGG-IPV---------YHIDELEEVVKENDIEIGI 151 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC-hhhcCC-EeCC-eEE---------cCHHHHHHHHHHCCCCEEE
Confidence 4689999999999998886 346799999886542 211111 1111 111 2446677888888999888
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
-+.... ....+...+.+.|+..+
T Consensus 152 Ia~P~~-~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 152 LTVPAE-AAQEVADRLVEAGIKGI 174 (213)
T ss_pred EeCCch-hHHHHHHHHHHcCCCEE
Confidence 654322 23455667777776544
No 316
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=79.67 E-value=11 Score=42.61 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=58.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHH---cCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 7 VLDSILIANRGEIACRIMRTAKK---MGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~---~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
..+++||+|.|+.+..+++.+++ .|++++.+.++..... ..... + .-+.+.+.+.+++++.++|.
T Consensus 124 ~~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~i~g--~--------pVlg~~~~l~~~i~~~~id~ 191 (445)
T TIGR03025 124 NLRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR--VEVAG--L--------PVLGKLDDLVELVRAHRVDE 191 (445)
T ss_pred CCCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc--cccCC--C--------cccCCHHHHHHHHHhCCCCE
Confidence 35789999999999999999975 4899988764432221 11111 1 12346778899999999998
Q ss_pred EEeCCCCCcc--cHHHHHHHHHCCCeE
Q psy15251 84 IHPGYGFLSE--NAEFANAVEGNRLIF 108 (720)
Q Consensus 84 I~pg~g~lsE--~~~~a~~~~~~gl~~ 108 (720)
|+-.....++ ...+.+.|+..|+.+
T Consensus 192 ViIa~p~~~~~~~~~ll~~~~~~gv~V 218 (445)
T TIGR03025 192 VIIALPLSEEARILELLLQLRDLGVDV 218 (445)
T ss_pred EEEecCcccHHHHHHHHHHHHhcCCEE
Confidence 8755432221 124456677777654
No 317
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=79.39 E-value=8.4 Score=42.28 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=43.8
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 9 DSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 9 ~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
++|||.|+ |-++..+++.+.+.|+++++++...+..........+.+. .+..+.+.+..+.+ ++|.|+-.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~-------~Dl~d~~~~~~~~~--~~D~Vih~ 92 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHL-------VDLRVMENCLKVTK--GVDHVFNL 92 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEE-------CCCCCHHHHHHHHh--CCCEEEEc
Confidence 58999996 9999999999999999999886433211111111122222 14455565555553 57876643
No 318
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.34 E-value=2.2 Score=38.02 Aligned_cols=85 Identities=20% Similarity=0.071 Sum_probs=51.7
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCC
Q psy15251 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGF 90 (720)
Q Consensus 11 iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~ 90 (720)
++|+|.|..+..+++.+++.++++++++.+++........--..+. + +..+.+. ++-+.-.++++++...+-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~-g------d~~~~~~-l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIY-G------DATDPEV-LERAGIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEE-S-------TTSHHH-HHHTTGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccccc-c------cchhhhH-HhhcCccccCEEEEccCC
Confidence 6899999999999999999888999997665432221111123333 2 4455443 344455678888866653
Q ss_pred CcccHHHHHHHHH
Q psy15251 91 LSENAEFANAVEG 103 (720)
Q Consensus 91 lsE~~~~a~~~~~ 103 (720)
-.+|...+..+++
T Consensus 73 d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 73 DEENLLIALLARE 85 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555554
No 319
>PRK12828 short chain dehydrogenase; Provisional
Probab=79.17 E-value=8.7 Score=38.53 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=32.2
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
|+|..+ .|++||.|+ |.++..+++.+.+.|+++++++.++
T Consensus 1 ~~~~~~-~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 1 MEHSLQ-GKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCCCCC-CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 666543 578999985 8899999999999999988886543
No 320
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=79.12 E-value=0.26 Score=44.72 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcccccc---------cEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC-C
Q psy15251 20 ACRIMRTAKKMGIRVVSVYSDIDADALHVKMA---------DEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY-G 89 (720)
Q Consensus 20 a~~iira~~~~G~~~v~v~s~~d~~~~~~~~a---------D~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~-g 89 (720)
|..|++++.+.+|+++.++-+.+......... ..... ........-... .......+|.++|.. |
T Consensus 21 a~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~DvvFp~lHG 95 (117)
T PF01820_consen 21 ARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSF-KPLPEISASLIE----KNEQKLEVDVVFPVLHG 95 (117)
T ss_dssp HHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEE-SSSCCEEEEETT----ESTTCTTCSEEEEECCS
T ss_pred HHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhccc-cccccccccccc----cccccccCCEEEEeccC
Confidence 88899999999999999987766533221100 00000 000000000000 000156789999874 7
Q ss_pred CCcccHHHHHHHHHCCCeEeCC
Q psy15251 90 FLSENAEFANAVEGNRLIFVGP 111 (720)
Q Consensus 90 ~lsE~~~~a~~~~~~gl~~~Gp 111 (720)
...|+..+..+++-+++|++|+
T Consensus 96 ~~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 96 PNGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp TTTSSSHHHHHHHHTT-EBSSS
T ss_pred CCCcccHHHHHHHHcCCCCcCC
Confidence 7779999999999999999985
No 321
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=78.59 E-value=7.9 Score=40.87 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=55.1
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||+| .|.++..+.+.+++.|++++.++.. . -+..|.+.+.++.+..++|.|+-.-
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~-------~dl~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIATSRS---------------D-------LDLTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------C-------S-TTSHHHHHHHHHHH--SEEEE--
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------h-------cCCCCHHHHHHHHHHhCCCeEeccc
Confidence 899999 6999999999999999998877322 1 1346788899999999999888654
Q ss_pred CCCc----c-cH------------HHHHHHHHCCCeEeCCCHHHH
Q psy15251 89 GFLS----E-NA------------EFANAVEGNRLIFVGPSSEAI 116 (720)
Q Consensus 89 g~ls----E-~~------------~~a~~~~~~gl~~~Gp~~~~i 116 (720)
++.. | ++ .++++|.+.|++++-.|.+.+
T Consensus 60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~V 104 (286)
T PF04321_consen 60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYV 104 (286)
T ss_dssp ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGG
T ss_pred eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEE
Confidence 4311 1 11 235666777777665555543
No 322
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=78.57 E-value=11 Score=42.29 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=59.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
-||+.|.+.+..+..+++.+.++|++++.+.+....... ..+.+..+.+ .|...+.+.+++.++|.++.+
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~~~~~---------~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVETVVI---------GDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcCcEEe---------CCHHHHHHHHhhcCCCEEEEC
Confidence 578999998889999999999999999988766443322 2222222222 366778888888999988744
Q ss_pred CCCCcccHHHHHHHHHCCCeEe
Q psy15251 88 YGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
.- -.....++|+|++
T Consensus 381 s~-------~k~~A~~l~ip~i 395 (432)
T TIGR01285 381 SH-------GRALAQRLALPLV 395 (432)
T ss_pred cc-------hHHHHHHcCCCEE
Confidence 31 1345566788876
No 323
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=78.35 E-value=11 Score=39.41 Aligned_cols=118 Identities=9% Similarity=0.049 Sum_probs=68.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHc-CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANRGEIACRIMRTAKKM-GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~-G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||.|+|.|.++..+++.+.+. +++++++................ ...-+.+.+.+ ..++|.|+-..
T Consensus 3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~--------~~~~~~d~~~l-----~~~~DvVve~t 69 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE--------AVRVVSSVDAL-----PQRPDLVVECA 69 (265)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc--------CCeeeCCHHHh-----ccCCCEEEECC
Confidence 899999999999999999876 67777776322111100000000 01123455443 46789887554
Q ss_pred CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCC--CCCccc
Q psy15251 89 GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVP--VIPGYH 141 (720)
Q Consensus 89 g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp--~p~~~~ 141 (720)
+.- ....++..+.+.|+.++--++.++.........++.+++.|.. +|++..
T Consensus 70 ~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~ 123 (265)
T PRK13303 70 GHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAI 123 (265)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHh
Confidence 421 2346677777889888765555543222234567778888764 244443
No 324
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=78.09 E-value=3.7 Score=41.18 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=41.8
Q ss_pred cceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCe-EEE
Q psy15251 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQN-LVK 716 (720)
Q Consensus 657 ~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~-l~~ 716 (720)
.+.|+. .+++|+.|++||.+..++-- ....+.-|.+ .++.+++||.|..|+. |++
T Consensus 149 ~r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 149 ARRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred ccEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 344443 57899999999999999854 4566666765 2688999999999984 444
No 325
>KOG1447|consensus
Probab=78.06 E-value=13 Score=38.02 Aligned_cols=101 Identities=25% Similarity=0.287 Sum_probs=68.7
Q ss_pred HHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCc-EEEeecCCCCCc-----------ceEEeCCHHHHHHHHHH
Q psy15251 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP-LMIKAVRGGGGK-----------GMRIVRDSANFLAQLRS 189 (720)
Q Consensus 122 K~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~P-vvvKp~~g~Gg~-----------Gv~~v~~~~el~~~~~~ 189 (720)
.+++|++|+++|+.+-.+.. .++..+..+.+..++-| .|+|+.--.||+ ||.+-.+.....+..++
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~V--a~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRFFV--ADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEEEE--ecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 45788999999999988877 77788888888888876 899998655554 35667788887777776
Q ss_pred HHHHHH--hcCCC-----CcEEEeccccCCceEEEEEEEccc
Q psy15251 190 AQRESQ--SAFND-----SKVLLEKYIQSPRHIEVQIIGDRY 224 (720)
Q Consensus 190 ~~~~~~--~~f~~-----~~~lvEeyI~g~~~~~v~v~~d~~ 224 (720)
+...-. ..-+. +.+++-+-++-.||--..++.|+.
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe 143 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRE 143 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccc
Confidence 553211 00111 356666666555665556666543
No 326
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=78.03 E-value=4.3 Score=38.81 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSV 37 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v 37 (720)
-+++||+|+|..|.+.++.+-+.|.+++++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 589999999999999999999999999888
No 327
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.95 E-value=2.7 Score=49.58 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=68.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
.++++|+|.|..+..+++.+++.|+++++++.|++.-....+. +..+..+ +-.+. .+++.+.-.++++++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~G------Dat~~-~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-GMKVFYG------DATRM-DLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-CCeEEEE------eCCCH-HHHHhcCCCcCCEEEEE
Confidence 4689999999999999999999999999997766533222222 2223222 22333 34555666678888866
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVI 137 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p 137 (720)
.+--..|......+++. .|+...+.+.+|..... .+.++|+...
T Consensus 472 ~~d~~~n~~i~~~ar~~-----~p~~~iiaRa~d~~~~~-~L~~~Gad~v 515 (621)
T PRK03562 472 IDDPQTSLQLVELVKEH-----FPHLQIIARARDVDHYI-RLRQAGVEKP 515 (621)
T ss_pred eCCHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHH-HHHHCCCCEE
Confidence 65322233333444433 13333444556654433 4455676654
No 328
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=77.86 E-value=3 Score=42.84 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=30.4
Q ss_pred eEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 685 MEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 685 m~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
-|.-|+||.+|.+.. .++-||.|++||+|+.|..
T Consensus 163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 378899999999987 7899999999999999863
No 329
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=77.70 E-value=4.1 Score=40.27 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=39.3
Q ss_pred ecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEE
Q psy15251 664 LVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLV 715 (720)
Q Consensus 664 ~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~ 715 (720)
.+++|+.|++||.+..++-- ....+.-|.+ .++.+++||.|..|+.|+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 46899999999999999854 5666677776 367899999999999654
No 330
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=77.45 E-value=12 Score=42.01 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=56.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc-------cccccEEEEeCCCCCcccccCHHHHHHHHHHc
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALH-------VKMADEAYRLEGKSSLDTYLNQAKILDIAVRS 79 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~-------~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~ 79 (720)
..||+.|++....+..+.+.+.++|.+++++.++....... ....+..+.+ +..|...+.+++++.
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~-------~~~d~~e~~~~l~~~ 371 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVIL-------DGADFFDIESYAKEL 371 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEE-------eCCCHHHHHHHHHhc
Confidence 35799999988899999999999999997775543222111 1112333322 234667777788888
Q ss_pred CCCEEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 80 QCQAIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 80 ~~daI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
++|.++-+. .......+.|+|++
T Consensus 372 ~~dliiG~s-------~~~~~a~~~~ip~~ 394 (429)
T cd03466 372 KIDVLIGNS-------YGRRIAEKLGIPLI 394 (429)
T ss_pred CCCEEEECc-------hhHHHHHHcCCCEE
Confidence 888776321 12345566777764
No 331
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.18 E-value=18 Score=36.04 Aligned_cols=113 Identities=9% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
-++++|.|-|.++..+++.+.+.|.++++.+.+++... .+++.. + ..+.+.+.+. ..++|.++|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~---~~~~~~---g-----~~~v~~~~l~----~~~~Dv~vp~ 92 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVA---RAAELF---G-----ATVVAPEEIY----SVDADVFAPC 92 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH---HHHHHc---C-----CEEEcchhhc----cccCCEEEec
Confidence 46899999999999999999999999886533322111 111110 0 0111222222 2368989887
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCccc
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYH 141 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~ 141 (720)
.. ++..-...+.+.+...+.-.... -+.| ....++|++.||...|-+.
T Consensus 93 A~---~~~I~~~~~~~l~~~~v~~~AN~--~~~~-~~~~~~L~~~Gi~~~Pd~~ 140 (200)
T cd01075 93 AL---GGVINDDTIPQLKAKAIAGAANN--QLAD-PRHGQMLHERGILYAPDYV 140 (200)
T ss_pred cc---ccccCHHHHHHcCCCEEEECCcC--ccCC-HhHHHHHHHCCCEEeCcee
Confidence 52 11111222333333333211110 0112 4567788999999988443
No 332
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.96 E-value=4.4 Score=41.53 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCccC--CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 1 MTIASC--VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 1 m~~~~~--~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|.|++. ..|++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 1 ~~~~~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 1 MSLNLFDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCccccCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 444443 3479999985 889999999999999998877543
No 333
>PRK05693 short chain dehydrogenase; Provisional
Probab=76.73 E-value=7.6 Score=40.33 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
||++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999985 789999999999999998887543
No 334
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=76.67 E-value=8.8 Score=42.25 Aligned_cols=87 Identities=21% Similarity=0.388 Sum_probs=62.5
Q ss_pred HHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEE--eCCHHHHHHHHHHHHHHHHhcCC-------C
Q psy15251 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI--VRDSANFLAQLRSAQRESQSAFN-------D 200 (720)
Q Consensus 130 ~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~--v~~~~el~~~~~~~~~~~~~~f~-------~ 200 (720)
++.-+|.+|++. |..+++....+..+. -+||||..|+||.|+.+ .-+.+|+.+..+++.+.-.+..+ .
T Consensus 340 e~~lL~nv~T~~--c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST 416 (488)
T COG2308 340 EEPLLPNVPTYW--CGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQLST 416 (488)
T ss_pred cccccCCCCeee--cCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhChhhhcccccccccc
Confidence 455688889888 888888887777664 69999999999888876 45677888877777765433222 2
Q ss_pred CcEEEeccccCCceEEEEEE
Q psy15251 201 SKVLLEKYIQSPRHIEVQII 220 (720)
Q Consensus 201 ~~~lvEeyI~g~~~~~v~v~ 220 (720)
-+.+++.-+. ++|+..-+|
T Consensus 417 ~Pt~v~~~l~-pr~vdlR~f 435 (488)
T COG2308 417 VPTFVDGGLA-PRHVDLRPF 435 (488)
T ss_pred cceEECCeec-cccccceeE
Confidence 3566666666 677665554
No 335
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=76.66 E-value=61 Score=39.45 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCC-CCcEEEEEecC
Q psy15251 252 GISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPS-SGEFYFMEMNT 298 (720)
Q Consensus 252 ~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~-~g~~~~iEiNp 298 (720)
.++++...+|.+.+.++-+.+|. +-.+||-++ . +|++|++-.-|
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai~-~~~g~l~ILQaRP 332 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAKD-GDDGKLYIVQARP 332 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEE-CCCCcEEEEEeec
Confidence 48888999999999999999877 789999998 4 58899998543
No 336
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.55 E-value=8.7 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.011 Sum_probs=29.4
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 6 CVLDSILIAN-RGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 6 ~~~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.+.+++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457899998 5889999999999999998888654
No 337
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.54 E-value=8.7 Score=38.88 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=31.3
Q ss_pred CccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 3 IASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 3 ~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|....||++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 34456789999985 889999999999999998887543
No 338
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=76.48 E-value=16 Score=41.34 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=57.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---cCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKK---MGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~---~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
.+++||+|.|+.+..+++++++ .|++++.+.++....... ..+ + .-+.+.+.+.+++++.++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~--~~g--v--------pVlg~~~dl~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTG--VRG--V--------PVLGKLDDLEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCccccc--cCC--C--------CccCCHHHHHHHHHhcCCCEE
Confidence 4789999999999999999975 479998876543222111 111 1 113466788999999999988
Q ss_pred EeCCCCCcc--cHHHHHHHHHCCCeE
Q psy15251 85 HPGYGFLSE--NAEFANAVEGNRLIF 108 (720)
Q Consensus 85 ~pg~g~lsE--~~~~a~~~~~~gl~~ 108 (720)
+........ ...+.+.|+..|+.+
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V 221 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDV 221 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEE
Confidence 755432211 123455666666643
No 339
>PRK08177 short chain dehydrogenase; Provisional
Probab=76.28 E-value=12 Score=37.57 Aligned_cols=76 Identities=9% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHH---HcCCCE
Q psy15251 8 LDSILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAV---RSQCQA 83 (720)
Q Consensus 8 ~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~---~~~~da 83 (720)
|+++||.| .|.++..+++.+.+.|+++++++.++..........+..+.. -+..+.+.+.++.+ ..++|.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------~D~~d~~~~~~~~~~~~~~~id~ 74 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEK------LDMNDPASLDQLLQRLQGQRFDL 74 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEE------cCCCCHHHHHHHHHHhhcCCCCE
Confidence 46899998 578899999999999999988875543321111111111111 13345444444444 346888
Q ss_pred EEeCCC
Q psy15251 84 IHPGYG 89 (720)
Q Consensus 84 I~pg~g 89 (720)
|+-..|
T Consensus 75 vi~~ag 80 (225)
T PRK08177 75 LFVNAG 80 (225)
T ss_pred EEEcCc
Confidence 875544
No 340
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.24 E-value=7.3 Score=43.87 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=53.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccc-cccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVK-MADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~-~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
.+++++|+|.|..+..+++.+.+.|+++++++.+++....... .-+..+..+ +..+.+.+ ..+.-.++|+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~g------d~~~~~~L-~~~~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHG------DGTDQELL-EEEGIDEADAFI 302 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEEC------CCCCHHHH-HhcCCccCCEEE
Confidence 4689999999999999999999999999999665542211111 112222222 33444333 334445678887
Q ss_pred eCCCCCcccHHHHHHHHHCC
Q psy15251 86 PGYGFLSENAEFANAVEGNR 105 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~g 105 (720)
...+.-..|...+..+.+.+
T Consensus 303 ~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 303 ALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred ECCCCcHHHHHHHHHHHHhC
Confidence 65543222333333344443
No 341
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.87 E-value=5.5 Score=43.80 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEee
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s 39 (720)
..++++|+|.|.++..+++.++++|.++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~ 198 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDI 198 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 356899999999999999999999998776643
No 342
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=75.77 E-value=12 Score=41.31 Aligned_cols=33 Identities=30% Similarity=0.659 Sum_probs=28.8
Q ss_pred CCCCeeecCCcceeeEE-------ecCCCCeeeCCCeEEE
Q psy15251 647 SDPSKVVSPMPGMVDKV-------LVQPGQAVKTGDPIMV 679 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~-------~v~~G~~V~~g~~l~~ 679 (720)
..+..|.|-..|.|.++ .|++||.|++||+|+.
T Consensus 187 ~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 187 EEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 45678999999999887 4899999999999983
No 343
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=75.63 E-value=18 Score=41.00 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKM---GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~---G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
.+++||+|.|+.+..+++.+++. |++++.+.++.... ...+ .-+.+.+.+.++++++++|-|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~---------g~~V------pvlG~~~dL~~~v~~~~IdeV 207 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKPG---------GVSN------DWAGNLQQLVEDAKAGKIHNV 207 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCccc---------cCCC------CcCCCHHHHHHHHHhCCCCEE
Confidence 46899999999999999998764 89999886543210 0111 123567889999999999988
Q ss_pred EeCCCCCcc--cHHHHHHHHHCCCeE
Q psy15251 85 HPGYGFLSE--NAEFANAVEGNRLIF 108 (720)
Q Consensus 85 ~pg~g~lsE--~~~~a~~~~~~gl~~ 108 (720)
+......++ ...+.+.|++.++.+
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V 233 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSV 233 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeE
Confidence 765533221 224455677777654
No 344
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.58 E-value=6.6 Score=40.62 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCCccC-CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 1 MTIASC-VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 1 m~~~~~-~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|+|.++ +.|++||.|. |.++..+++.+.+.|+++++++.+
T Consensus 1 ~~~~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 1 MTTMFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CCccccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444333 3579999985 789999999999999998888644
No 345
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.35 E-value=13 Score=42.00 Aligned_cols=92 Identities=8% Similarity=0.060 Sum_probs=54.4
Q ss_pred CccCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCC
Q psy15251 3 IASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQ 82 (720)
Q Consensus 3 ~~~~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 82 (720)
|.++..|++||+|-|..++.+++.|++ |.++++.+...........+.+..+ ++. ...+.+ .++|
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~~-------~~~~~~------~~~d 65 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IAA-------LSDSRW------QNLD 65 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ecc-------CChhHh------hCCC
Confidence 566677899999999999999999995 9988776422211110011111111 110 111111 3578
Q ss_pred EEEeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 83 AIHPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 83 aI~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
.|+...|.-..++.+ ..+.+.|+++++
T Consensus 66 ~vV~SPgI~~~~p~~-~~a~~~gi~v~~ 92 (454)
T PRK01368 66 KIVLSPGIPLTHEIV-KIAKNFNIPITS 92 (454)
T ss_pred EEEECCCCCCCCHHH-HHHHHCCCceec
Confidence 888777655445544 444677898874
No 346
>PRK08017 oxidoreductase; Provisional
Probab=75.22 E-value=12 Score=38.19 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
+|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999997 9999999999999999988876543
No 347
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=75.22 E-value=13 Score=40.25 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=45.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC-CCCC-ccc-cc---ccEEEEeCCCCCcccccCHHHHHHHHHHcC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI-DADA-LHV-KM---ADEAYRLEGKSSLDTYLNQAKILDIAVRSQ 80 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~-d~~~-~~~-~~---aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~ 80 (720)
|+++||.|+ |.++..+++.+.+.|++++++.... .... ... .. .+..+.. -+..|.+.+.++.+..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~Dl~d~~~~~~~~~~~~ 74 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEK------VDICDRAELARVFTEHQ 74 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEE------CCCcChHHHHHHHhhcC
Confidence 468999985 8899999999999999866543221 1110 000 00 0111111 24566777777777777
Q ss_pred CCEEEeCCC
Q psy15251 81 CQAIHPGYG 89 (720)
Q Consensus 81 ~daI~pg~g 89 (720)
+|.|+-.-+
T Consensus 75 ~D~Vih~A~ 83 (355)
T PRK10217 75 PDCVMHLAA 83 (355)
T ss_pred CCEEEECCc
Confidence 898774433
No 348
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=75.07 E-value=8.7 Score=37.98 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=42.5
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEE-E-EeeeeEEEEEcCCCeEEEEEEcCCCCccc
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMV-I-IAMKMEYVITSGTSGIIEEIFYAAGQSIQ 709 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~-~-eamkm~~~i~a~~~G~v~~~~~~~g~~v~ 709 (720)
.++..+.||..|+|..+.- .-+....|+.+.+ + =+=...|-++||.+|+|.++...+|+...
T Consensus 32 ~~~~~ivSPaDG~v~~i~~-~~~~~~~g~~~~i~I~Lsp~DyHr~haP~~G~v~~~~~~~G~~~~ 95 (189)
T TIGR00164 32 QGPEAVLSPADGRIDVVER-ARRPFPDGDGLKISIFMSPFDVHVNRAPAGGKVTYVKHIDGSFVP 95 (189)
T ss_pred CCCCEEEeCCCcEEEEEEe-eccccCCCcEEEEEEEcCCcccceEEcccccEEEEEEEECCeEee
Confidence 3556799999999987631 1222333443332 1 24466799999999999999999997543
No 349
>PRK06523 short chain dehydrogenase; Provisional
Probab=74.96 E-value=15 Score=37.66 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=32.5
Q ss_pred CCCccCC-CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 1 MTIASCV-LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 1 m~~~~~~-~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
|+|...+ -|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~~~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 1 MSFFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCcCcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 6665443 478999985 7899999999999999988886543
No 350
>PRK07109 short chain dehydrogenase; Provisional
Probab=74.84 E-value=6 Score=42.75 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|+|.....+++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 1 ~~~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 1 MMLKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5555555689999985 789999999999999998887543
No 351
>PRK08264 short chain dehydrogenase; Validated
Probab=74.84 E-value=17 Score=36.50 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCC-cEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcC-CCE
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGI-RVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQ-CQA 83 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~-~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~-~da 83 (720)
..+++||.|+ |.++..+++.+.+.|+ +++++..+.+.... ..+....+. .+..+.+.+.++.+..+ +|+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~ 76 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQ-----LDVTDPASVAAAAEAASDVTI 76 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEE-----ecCCCHHHHHHHHHhcCCCCE
Confidence 3468999984 8899999999999999 87777544332211 111221111 24556677777766653 788
Q ss_pred EEeCCCC
Q psy15251 84 IHPGYGF 90 (720)
Q Consensus 84 I~pg~g~ 90 (720)
|+-..|.
T Consensus 77 vi~~ag~ 83 (238)
T PRK08264 77 LVNNAGI 83 (238)
T ss_pred EEECCCc
Confidence 8765554
No 352
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=74.79 E-value=12 Score=40.53 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=49.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCccc---ccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHV---KMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~---~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
.++|||.|+ |.++..+++.+.+.|++++++..+........ ...+....+ ..+..+.+.+.++.++.++|.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence 368999995 88999999999999999988754332211110 011111111 125567788888888888898
Q ss_pred EEeCCC
Q psy15251 84 IHPGYG 89 (720)
Q Consensus 84 I~pg~g 89 (720)
|+-.-+
T Consensus 79 vih~A~ 84 (349)
T TIGR02622 79 VFHLAA 84 (349)
T ss_pred EEECCc
Confidence 775443
No 353
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.73 E-value=9.9 Score=38.29 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 6 CVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 6 ~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
.+++++||.|+ |.++..+++.+.+.|++++++..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 34679999984 88999999999999999766543
No 354
>KOG0369|consensus
Probab=74.62 E-value=2.3 Score=48.61 Aligned_cols=66 Identities=24% Similarity=0.486 Sum_probs=59.9
Q ss_pred CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEE-------EcCCCeEEEEEEcCCCCcccCCCeEEEEec
Q psy15251 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVI-------TSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719 (720)
Q Consensus 647 ~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i-------~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 719 (720)
...+.|-|||||+|+++.|++|+.|+|||+|+++. - .||.+|+|+++.+..|+.|+.|+++++||+
T Consensus 1104 ~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS-------AMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1104 GVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS-------AMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred CCcccccCCCCCceEEEEEecCceecCCCceEeee-------cceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 56678999999999999999999999999999862 2 259999999999999999999999999974
No 355
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=74.60 E-value=35 Score=34.88 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.+++|||.|+ |.++..+++.+.+.|++++++..++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 3579999994 8999999999999999988775443
No 356
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=74.08 E-value=93 Score=37.87 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCcEEEEEecC
Q psy15251 252 GISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298 (720)
Q Consensus 252 ~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiNp 298 (720)
.++++...+|.+.+.++-+.+|. +-.+||-++..+|++|++..=|
T Consensus 286 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWa~~~~~g~l~iLQaRP 330 (782)
T TIGR01418 286 SLSDEEILELAKLAVLIEKHYGR--PMDIEWAKDGFDGEIFIVQARP 330 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCeEEEEEeec
Confidence 58899999999999999999886 7899999983278999998543
No 357
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=73.94 E-value=12 Score=42.38 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=54.3
Q ss_pred ccCCCCEEEEEcCcHHHHH-HHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCC
Q psy15251 4 ASCVLDSILIANRGEIACR-IMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQ 82 (720)
Q Consensus 4 ~~~~~~~iLI~~~G~~a~~-iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 82 (720)
.....++++|+|-|..+.. +++.|+++|++|.+.+..... ....+...-+.+- .. .+.+.+ .++|
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~--~~~~l~~~gi~~~-----~~-~~~~~~------~~~d 68 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA--VTQRLLELGAIIF-----IG-HDAENI------KDAD 68 (461)
T ss_pred CcCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh--HHHHHHHCCCEEe-----CC-CCHHHC------CCCC
Confidence 3344579999999999999 799999999998776433221 1111211111110 00 121211 2578
Q ss_pred EEEeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 83 AIHPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 83 aI~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
.|+...|.-..++.+ ..+.+.|+++++
T Consensus 69 ~vv~spgi~~~~~~~-~~a~~~~i~i~~ 95 (461)
T PRK00421 69 VVVYSSAIPDDNPEL-VAARELGIPVVR 95 (461)
T ss_pred EEEECCCCCCCCHHH-HHHHHCCCcEEe
Confidence 888777654445554 445678898874
No 358
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=73.80 E-value=7.3 Score=36.06 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcHH----HHHHHHHHHHcCCcEEEEeeCCC-----CCCcccccccEEEEeCCCCCcccccCH---HHHHH
Q psy15251 7 VLDSILIANRGEI----ACRIMRTAKKMGIRVVSVYSDID-----ADALHVKMADEAYRLEGKSSLDTYLNQ---AKILD 74 (720)
Q Consensus 7 ~~~~iLI~~~G~~----a~~iira~~~~G~~~v~v~s~~d-----~~~~~~~~aD~~~~i~~~~~~~~~~~~---~~i~~ 74 (720)
..|+|-++|.+.. +.++.+.+.+.||+++-|.+.-+ ..-.+.+++|---.++ --+-+... ..+.+
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~ID---iVdvFR~~e~~~~i~~ 91 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPID---IVDVFRRSEAAPEVAR 91 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCc---EEEEecChhhhHHHHH
Confidence 4689999997654 99999999999999999955212 1111222222100000 00111222 23444
Q ss_pred HHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 75 IAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 75 ~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
-+-+.++..+|-..|. +|.+..+.++++|+.++
T Consensus 92 eal~~~~kv~W~QlGi--~n~ea~~~~~~aG~~vV 124 (140)
T COG1832 92 EALEKGAKVVWLQLGI--RNEEAAEKARDAGLDVV 124 (140)
T ss_pred HHHhhCCCeEEEecCc--CCHHHHHHHHHhCcHHH
Confidence 4555678889887775 45667788888887543
No 359
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=73.73 E-value=14 Score=37.10 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=28.7
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
+.+++||.|. |.++..+++.+.+.|++++++..++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3468999984 8899999999999999987775443
No 360
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.56 E-value=12 Score=38.35 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
+.|++||.|+ |.++..+++.+.+.|++++++..++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 4689999985 8899999999999999988875544
No 361
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=73.49 E-value=6.2 Score=43.53 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=67.2
Q ss_pred EEEEcCcHHHHHHHHHHHHcCC--cEEEEeeCCCCCCcccc----cccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 11 ILIANRGEIACRIMRTAKKMGI--RVVSVYSDIDADALHVK----MADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 11 iLI~~~G~~a~~iira~~~~G~--~~v~v~s~~d~~~~~~~----~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
|||+|.|.++..+++.+.+.+- ++++.+.+.+....... ..-+.+.+ +..|.+.+.+++++. |.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~l~~~~~~~--dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQV-------DVNDPESLAELLRGC--DVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE---------TTTHHHHHHHHTTS--SEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEE-------ecCCHHHHHHHHhcC--CEE
Confidence 7999999999999999998874 55555433322111110 01122332 456777887877655 888
Q ss_pred EeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q psy15251 85 HPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY 140 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~ 140 (720)
+-..+.. .+..++++|.+.|+.++-++.-.- .-....+.++++|+....+.
T Consensus 72 in~~gp~-~~~~v~~~~i~~g~~yvD~~~~~~----~~~~l~~~a~~~g~~~l~~~ 122 (386)
T PF03435_consen 72 INCAGPF-FGEPVARACIEAGVHYVDTSYVTE----EMLALDEEAKEAGVTALPGC 122 (386)
T ss_dssp EE-SSGG-GHHHHHHHHHHHT-EEEESS-HHH----HHHHCHHHHHHTTSEEE-S-
T ss_pred EECCccc-hhHHHHHHHHHhCCCeeccchhHH----HHHHHHHHHHhhCCEEEeCc
Confidence 8777643 457899999999999997543111 11223455567787776643
No 362
>PLN02572 UDP-sulfoquinovose synthase
Probab=73.48 E-value=17 Score=40.96 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~ 38 (720)
++++|||.|+ |-++..+++.|.+.|+++++++
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 5678999985 8999999999999999998875
No 363
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.02 E-value=6.3 Score=41.88 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=34.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALH 47 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~ 47 (720)
||+.+|-.+.+..+++++-+.|+++++|++.+|.+...
T Consensus 3 kivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR 40 (307)
T COG0223 3 RIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGR 40 (307)
T ss_pred EEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCccCC
Confidence 89999999999999999999999999999998876543
No 364
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=72.88 E-value=33 Score=38.76 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCEEEEEcC----cHHHHHHHHHHHHcCC--cEEEEeeCCCCC---Ccccc------cccEEEEeCCCCCcccccCHHHH
Q psy15251 8 LDSILIANR----GEIACRIMRTAKKMGI--RVVSVYSDIDAD---ALHVK------MADEAYRLEGKSSLDTYLNQAKI 72 (720)
Q Consensus 8 ~~~iLI~~~----G~~a~~iira~~~~G~--~~v~v~s~~d~~---~~~~~------~aD~~~~i~~~~~~~~~~~~~~i 72 (720)
.++|.|+|. +..+.++++.+++.|| +++.|....+.- ..+.. -.|-.+..- +-.....+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~v------p~~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVV------PAKYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEec------CHHHHHHH
Confidence 478999987 4479999999999998 577775432211 11111 124333321 11334556
Q ss_pred HHHHHHcCCCEEE-eCCCCCcc-------cHHHHHHHHHCCCeEeCCCHHHHHHh
Q psy15251 73 LDIAVRSQCQAIH-PGYGFLSE-------NAEFANAVEGNRLIFVGPSSEAIRNM 119 (720)
Q Consensus 73 ~~~a~~~~~daI~-pg~g~lsE-------~~~~a~~~~~~gl~~~Gp~~~~i~~~ 119 (720)
++.|.+.++.+++ ...||-.. ...+.+.+++.|+.++||+---+-..
T Consensus 81 l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~ 135 (447)
T TIGR02717 81 VEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINT 135 (447)
T ss_pred HHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecC
Confidence 6667778888664 34444311 13566778889999999875444333
No 365
>PRK10537 voltage-gated potassium channel; Provisional
Probab=72.59 E-value=11 Score=41.76 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
.++++|+|.|..+..+++.+++.|++++++..+..... . ..+..+..+ +..+. ..++-+.-.++++++..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~--~-~~g~~vI~G------D~td~-e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHR--L-PDDADLIPG------DSSDS-AVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhh--c-cCCCcEEEe------CCCCH-HHHHhcCcccCCEEEEc
Confidence 35799999999999999999999999999865422111 1 111122222 33343 44555556678888876
Q ss_pred CCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPV 136 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~ 136 (720)
.+.-.+|......+++.+ |+...+..+.|.. ..+.++++|...
T Consensus 310 t~dD~~Nl~ivL~ar~l~-----p~~kIIa~v~~~~-~~~~L~~~GaD~ 352 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMS-----SDVKTVAAVNDSK-NLEKIKRVHPDM 352 (393)
T ss_pred CCChHHHHHHHHHHHHhC-----CCCcEEEEECCHH-HHHHHHhcCCCE
Confidence 553334444444444432 3333333343433 345556676654
No 366
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=72.47 E-value=11 Score=37.63 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=51.0
Q ss_pred EEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 11 ILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 11 iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
|||+| .|-++..+++.+.+.|+.++.+..............+-.+.. -+..+.+.+.++.+..++|.|+-..+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~------~dl~~~~~~~~~~~~~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVI------GDLTDKEQLEKLLEKANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEE------SETTSHHHHHHHHHHHTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEE------eeccccccccccccccCceEEEEeec
Confidence 68998 588999999999999999886654433332211111222221 26678899999999999998885554
Q ss_pred C
Q psy15251 90 F 90 (720)
Q Consensus 90 ~ 90 (720)
.
T Consensus 75 ~ 75 (236)
T PF01370_consen 75 F 75 (236)
T ss_dssp S
T ss_pred c
Confidence 4
No 367
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=72.25 E-value=25 Score=36.81 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=73.7
Q ss_pred ccCCCCEEEEEcCcHHHHHHHHHHHHc--CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCC
Q psy15251 4 ASCVLDSILIANRGEIACRIMRTAKKM--GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQC 81 (720)
Q Consensus 4 ~~~~~~~iLI~~~G~~a~~iira~~~~--G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 81 (720)
++++..||.|+|.|.++..+++.+.+. ++++++++.. +... ...++++ +-. ...+.+.+.++ .++
T Consensus 2 ~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr-~~~~-a~~~a~~-~g~-----~~~~~~~eell-----~~~ 68 (271)
T PRK13302 2 SSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-DPQR-HADFIWG-LRR-----PPPVVPLDQLA-----THA 68 (271)
T ss_pred CCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC-CHHH-HHHHHHh-cCC-----CcccCCHHHHh-----cCC
Confidence 344456899999999999999999873 8888777542 2111 1122222 100 01235566553 258
Q ss_pred CEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCC--CCCccc
Q psy15251 82 QAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVP--VIPGYH 141 (720)
Q Consensus 82 daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp--~p~~~~ 141 (720)
|+|+-.... .-..++...+.+.|..++.-+..++. +-..+.+.+++.|.+ +|+++.
T Consensus 69 D~Vvi~tp~-~~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~l~v~sGa~ 126 (271)
T PRK13302 69 DIVVEAAPA-SVLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQIIVPTGAL 126 (271)
T ss_pred CEEEECCCc-HHHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCEEEEcchHH
Confidence 988866532 12345556666788877754444332 346778889999987 566654
No 368
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=72.17 E-value=21 Score=38.56 Aligned_cols=98 Identities=17% Similarity=0.043 Sum_probs=51.5
Q ss_pred EEEEEcCcHH-----HHHHHHHHHHcCCcEEEEeeCCCCCCcccc-cccEEEEeCCCCC--cc----------cccCHHH
Q psy15251 10 SILIANRGEI-----ACRIMRTAKKMGIRVVSVYSDIDADALHVK-MADEAYRLEGKSS--LD----------TYLNQAK 71 (720)
Q Consensus 10 ~iLI~~~G~~-----a~~iira~~~~G~~~v~v~s~~d~~~~~~~-~aD~~~~i~~~~~--~~----------~~~~~~~ 71 (720)
||+|.++|.. +..+++.+++.|++++++............ ..-..+.++.... .. .......
T Consensus 3 ~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (357)
T PRK00726 3 KILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQ 82 (357)
T ss_pred EEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHH
Confidence 6777754332 346899999999999888654321111111 1223334432110 00 1223345
Q ss_pred HHHHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 72 ILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 72 i~~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
+.++.++.++|.||...... +.....++...+++++
T Consensus 83 ~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 83 ARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEE
Confidence 56678888999999653221 1222233445667765
No 369
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=72.16 E-value=17 Score=36.82 Aligned_cols=33 Identities=24% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
-+++||+|+|..|.+=++.+.+.|-++.++.++
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 458999999999999999999999998888543
No 370
>KOG0238|consensus
Probab=71.92 E-value=3.3 Score=46.08 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=29.3
Q ss_pred EEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 687 YVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 687 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
..+.||..|.|.++++++||.|..||.|+.++
T Consensus 602 ~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 602 GVIVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred CceecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 44899999999999999999999999988875
No 371
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.84 E-value=8 Score=39.65 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=47.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCccc-ccccE-EEEeCCCCCcccccCHHHHHHHHHH-----
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHV-KMADE-AYRLEGKSSLDTYLNQAKILDIAVR----- 78 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~-~~aD~-~~~i~~~~~~~~~~~~~~i~~~a~~----- 78 (720)
+.+++||.|+ |.++..+++.+.+.|++++++..+........ ...+. ...+. -+..+.+.+.++..+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATV-----ADVADPAQVERVFDTAVERF 84 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEE-----ccCCCHHHHHHHHHHHHHHh
Confidence 4579999985 78899999999999999888864332111100 01111 11111 144566655554443
Q ss_pred cCCCEEEeCCCC
Q psy15251 79 SQCQAIHPGYGF 90 (720)
Q Consensus 79 ~~~daI~pg~g~ 90 (720)
.++|+|+-..+.
T Consensus 85 ~~~d~vi~~ag~ 96 (264)
T PRK12829 85 GGLDVLVNNAGI 96 (264)
T ss_pred CCCCEEEECCCC
Confidence 368988866553
No 372
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=71.67 E-value=5.8 Score=43.03 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIR-VVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~-~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
.++|||+|.|..+..+++.+.++|+. +++++.|.-..+ .+.-+.+.-..+.. ..-.-.+.+.+.+++.+.+.-+-
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~s---NL~RQ~l~~~~d~~-~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWS---NLQRQQLYTEEDAK-QKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccc---ccCccccccHHHcc-CCccHHHHHHHHHHHHCCCcEEE
Confidence 56899999999999999999999995 444533321111 01111111000000 00012344445556655543222
Q ss_pred CC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCC
Q psy15251 87 GY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP 138 (720)
Q Consensus 87 g~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~ 138 (720)
.+ ..++ ...+...+....+.+.+.+... .+....+++.+.|+|..-
T Consensus 100 ~~~~~~~-~~~~~~~~~~~DlVid~~D~~~-----~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 100 PVVTDVT-VEELEELVKEVDLIIDATDNFD-----TRLLINDLSQKYNIPWIY 146 (338)
T ss_pred EEeccCC-HHHHHHHhcCCCEEEEcCCCHH-----HHHHHHHHHHHcCCCEEE
Confidence 22 2222 1234455666677666544332 234466788889988754
No 373
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=71.58 E-value=7.7 Score=35.97 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
..+++||+|.|..+..++.++.++|++-+.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEE
Confidence 46899999999999999999999999966664
No 374
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=71.54 E-value=46 Score=34.52 Aligned_cols=117 Identities=13% Similarity=0.207 Sum_probs=68.2
Q ss_pred CCcccccCHHHHHHHHHHcCCCEEE--eCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCC
Q psy15251 61 SSLDTYLNQAKILDIAVRSQCQAIH--PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP 138 (720)
Q Consensus 61 ~~~~~~~~~~~i~~~a~~~~~daI~--pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~ 138 (720)
...+++.+.+..++-+++.++-+|. |+.|... ..|...+++.|+.| .. -..|-+.+++.|+-+.+
T Consensus 89 ~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliD--G~fR~~LEe~Gmgy---~~--------EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 89 CATDPFRDMDRFLDELKELGFSGVQNFPTVGLID--GQFRQNLEETGMGY---DR--------EVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp -TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--H---HH--------HHHHHHHHHHTT-EE--
T ss_pred cCcCCCCcHHHHHHHHHHhCCceEEECCcceeec--cHHHHHHHhcCCCH---HH--------HHHHHHHHHHCCCeeee
Confidence 3457889999999999999988875 7777654 78999999999864 22 23566788999999999
Q ss_pred cccCCCCCHHHHHHHHHHhCCcEEEeec--CCCCCcceEEeCCHHHHHHHHHHHHHHHH
Q psy15251 139 GYHGEDQNEEILMEQAERIGYPLMIKAV--RGGGGKGMRIVRDSANFLAQLRSAQRESQ 195 (720)
Q Consensus 139 ~~~~~~~s~~e~~~~~~~ig~PvvvKp~--~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~ 195 (720)
+.. +.+++.+.+ +.|--+++=-. --+|..|.....+.++..+.++++.+.++
T Consensus 156 yvf----~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~ 209 (268)
T PF09370_consen 156 YVF----NEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAAR 209 (268)
T ss_dssp EE-----SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHH
T ss_pred eec----CHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHH
Confidence 754 889988776 55655555333 23366788878888888888888776654
No 375
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.43 E-value=12 Score=41.94 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=60.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccc---------cccEEEEeCCCCCcccccCHHHHHHHHH
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVK---------MADEAYRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~---------~aD~~~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
.-||+.|.+....+..+.+.+.++|.+++.+.+..+......+ ...+.+. ..|...+.+.++
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~d~~el~~~i~ 368 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVF---------VGDLWDLESLAK 368 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEE---------CCCHHHHHHHhh
Confidence 3579999998899999999999999999988664333321111 1112222 247788888999
Q ss_pred HcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 78 RSQCQAIHPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 78 ~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
+.++|.++.+. .....+++.|+|++.
T Consensus 369 ~~~pdliig~~-------~~~~~a~~~~ip~i~ 394 (428)
T cd01965 369 EEPVDLLIGNS-------HGRYLARDLGIPLVR 394 (428)
T ss_pred ccCCCEEEECc-------hhHHHHHhcCCCEEE
Confidence 99999887432 223556667888763
No 376
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=71.40 E-value=4.8 Score=44.94 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=31.8
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK 684 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk 684 (720)
..+.||..|+|.++++++|+.|..|++|+.|+.-+
T Consensus 42 ~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 46899999999999999999999999999997543
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.32 E-value=13 Score=38.01 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
|+|.. ..|++||.|. |.++..+++.+.+.|+++++++.+.
T Consensus 1 m~~~l-~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 1 MSMTF-SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CCcCC-CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 55543 2479999985 7899999999999999988886543
No 378
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=71.27 E-value=18 Score=41.08 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCC----CcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDAD----ALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~----~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
-|++.|.+.+..+..+++.++++|.+++.+.+..... .....+.+..+.+ +..|.+.+.+.+++.++|.
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~-------~~~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVML-------DDANPRELLKLLLEYKADL 398 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEE-------eCCCHHHHHHHHhhcCCCE
Confidence 4788888888889999999999999998885432211 1101123333332 2247788999999999999
Q ss_pred EEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 84 IHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 84 I~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
++.+. .......+.|+|++
T Consensus 399 ~ig~~-------~~~~~a~k~giP~i 417 (456)
T TIGR01283 399 LIAGG-------KERYTALKLGIPFC 417 (456)
T ss_pred EEEcc-------chHHHHHhcCCCEE
Confidence 88432 11234457888876
No 379
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=71.20 E-value=18 Score=38.24 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=42.9
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 10 SILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
++||.|+ |-++..+++.+.+.|+++++++..+..........-+.+. .+..+.+.+.++++ ++|.|+
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-------~D~~~~~~l~~~~~--~~d~vi 69 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVE-------GDLRDPASLRKAVA--GCRALF 69 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEE-------eeCCCHHHHHHHHh--CCCEEE
Confidence 7899985 8999999999999999998887544322111101111221 25566667766665 467665
No 380
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.15 E-value=11 Score=37.95 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=27.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.+++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999984 688999999999999998888544
No 381
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=71.11 E-value=33 Score=34.78 Aligned_cols=35 Identities=9% Similarity=0.145 Sum_probs=29.2
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
..|++||.|. |.++..+++.+.+.|+++++++.+.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 3478999985 6899999999999999998886543
No 382
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=70.87 E-value=21 Score=38.55 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=37.1
Q ss_pred EEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHh---cCCCCcEEEecccc
Q psy15251 161 LMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQS---AFNDSKVLLEKYIQ 210 (720)
Q Consensus 161 vvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~---~f~~~~~lvEeyI~ 210 (720)
|+||+..|.-|.||..|++.+|+...=.+-+..-.. ...-..+||||=|.
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 799999999999999999999998755544432211 11125899999886
No 383
>PRK06179 short chain dehydrogenase; Provisional
Probab=70.81 E-value=26 Score=36.05 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHc-----CC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRS-----QC 81 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~-----~~ 81 (720)
.+++||.|+ |.++..+++.+.+.|++++++..+.+...... --+.+.. +..|.+.+.++.+.. .+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~--~~~~~~~-------D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP--GVELLEL-------DVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC--CCeeEEe-------ecCCHHHHHHHHHHHHHhCCCC
Confidence 358999984 78999999999999999888865433222111 0122222 445555555555442 47
Q ss_pred CEEEeCCCC
Q psy15251 82 QAIHPGYGF 90 (720)
Q Consensus 82 daI~pg~g~ 90 (720)
|.++-..|.
T Consensus 75 d~li~~ag~ 83 (270)
T PRK06179 75 DVLVNNAGV 83 (270)
T ss_pred CEEEECCCC
Confidence 887755553
No 384
>TIGR03586 PseI pseudaminic acid synthase.
Probab=70.55 E-value=66 Score=34.73 Aligned_cols=142 Identities=11% Similarity=0.201 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCcccHHH
Q psy15251 18 EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEF 97 (720)
Q Consensus 18 ~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~lsE~~~~ 97 (720)
+.|.++++++++.|...|=+.+... ...........|...+. .|.. ....+..++.. + ...+...+
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~~~-~~l~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~e----l----~~e~~~~L 82 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTYTP-DTITLDSDRPEFIIKGG----LWDG-RTLYDLYQEAH----T----PWEWHKEL 82 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeccH-HHhhccccccccccccC----CcCC-ccHHHHHHHhh----C----CHHHHHHH
Confidence 4599999999999998665543211 11111111111111100 1111 12233333321 1 11123567
Q ss_pred HHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEe
Q psy15251 98 ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIV 177 (720)
Q Consensus 98 a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v 177 (720)
.+.|++.|+.|+-.+.+. . .-+++.+.|++.-+--.+.+++..- .+.+.+.|-|+++| .|+
T Consensus 83 ~~~~~~~Gi~~~stpfd~-------~-svd~l~~~~v~~~KI~S~~~~n~~L-L~~va~~gkPvils-------tG~--- 143 (327)
T TIGR03586 83 FERAKELGLTIFSSPFDE-------T-AVDFLESLDVPAYKIASFEITDLPL-IRYVAKTGKPIIMS-------TGI--- 143 (327)
T ss_pred HHHHHHhCCcEEEccCCH-------H-HHHHHHHcCCCEEEECCccccCHHH-HHHHHhcCCcEEEE-------CCC---
Confidence 888999999998543222 1 1266778888765533334566554 44556679999997 455
Q ss_pred CCHHHHHHHHHHHHH
Q psy15251 178 RDSANFLAQLRSAQR 192 (720)
Q Consensus 178 ~~~~el~~~~~~~~~ 192 (720)
.+.+|+..+++.+.+
T Consensus 144 ~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 144 ATLEEIQEAVEACRE 158 (327)
T ss_pred CCHHHHHHHHHHHHH
Confidence 378999999888764
No 385
>PRK07236 hypothetical protein; Provisional
Probab=70.55 E-value=7.5 Score=42.79 Aligned_cols=33 Identities=6% Similarity=-0.156 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
++..+|+|+|+|..++.++..|++.|++++++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 345799999999999999999999999988884
No 386
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=70.52 E-value=18 Score=36.94 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
+.+|++|.|-|.++..+++.+.+.|.+++.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~ 61 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVS 61 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 45799999999999999999999999999773
No 387
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=70.43 E-value=61 Score=33.28 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCC-cEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHc---CCCEEEeCCCCCccc
Q psy15251 19 IACRIMRTAKKMGI-RVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRS---QCQAIHPGYGFLSEN 94 (720)
Q Consensus 19 ~a~~iira~~~~G~-~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~---~~daI~pg~g~lsE~ 94 (720)
-|+++++-+|+++- ..|=+. -+.|..+.+ .|....++.+++. +...+ | ..+++
T Consensus 77 eAv~~a~lare~~~~~~iKlE----------Vi~d~~~Ll---------pd~~~tv~aa~~L~~~Gf~vl-p---yc~dd 133 (248)
T cd04728 77 EAVRTARLAREALGTDWIKLE----------VIGDDKTLL---------PDPIETLKAAEILVKEGFTVL-P---YCTDD 133 (248)
T ss_pred HHHHHHHHHHHHhCCCeEEEE----------EecCccccc---------cCHHHHHHHHHHHHHCCCEEE-E---EeCCC
Confidence 37888888888752 222110 012333322 4777888888888 77644 3 23467
Q ss_pred HHHHHHHHHCCCeEeCC--C-HHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCC
Q psy15251 95 AEFANAVEGNRLIFVGP--S-SEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGG 171 (720)
Q Consensus 95 ~~~a~~~~~~gl~~~Gp--~-~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg 171 (720)
+.+++.+++.|...+-| + ..+=.-..|+...+.+.+..++|+.-.- .+.+++++.++.+ +|.=-|+ -+
T Consensus 134 ~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~eg--GI~tpeda~~Ame-lGAdgVl------V~ 204 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDA--GIGTPSDAAQAME-LGADAVL------LN 204 (248)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeC--CCCCHHHHHHHHH-cCCCEEE------EC
Confidence 99999999999877744 1 0111123466777777776777776553 3889999887664 5643222 13
Q ss_pred cceEEeCCHHHHHHHHHHHHHHHHhcCCCC
Q psy15251 172 KGMRIVRDSANFLAQLRSAQRESQSAFNDS 201 (720)
Q Consensus 172 ~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~ 201 (720)
-++....|+.....+|..+....+.+|..+
T Consensus 205 SAIt~a~dP~~ma~af~~Av~aGr~a~~ag 234 (248)
T cd04728 205 TAIAKAKDPVAMARAFKLAVEAGRLAYLAG 234 (248)
T ss_pred hHhcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 455566788888899988887777665443
No 388
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.42 E-value=2.6 Score=46.26 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CeeecCCcceeeEEe--cCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEE----------------------------E
Q psy15251 650 SKVVSPMPGMVDKVL--VQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIE----------------------------E 699 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~--v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~----------------------------~ 699 (720)
+.+.-|+.|.|+.-+ -..|..+-+|.+|..-. -.+|+||.+|+|. .
T Consensus 297 G~l~~PV~G~il~rFG~~~~gg~~wkG~vi~a~~----Ga~V~A~AdG~VvyA~~l~GYG~vvIldhG~gy~slyg~~~~ 372 (420)
T COG4942 297 GQLAWPVTGRILRRFGQADGGGLRWKGMVIGASA----GATVKAIADGRVVYADWLRGYGLVVILDHGGGYHSLYGGNQS 372 (420)
T ss_pred CCcCCCCCCcHHHHhcccCCCCccccceEEecCC----CCeeeeecCceEEechhhccCceEEEEEcCCccEEEecccce
Q ss_pred EEcCCCCcccCCCeEEEEecC
Q psy15251 700 IFYAAGQSIQKNQNLVKIVPS 720 (720)
Q Consensus 700 ~~~~~g~~v~~g~~l~~i~~~ 720 (720)
|.|++|+.|.+|++|+.+..+
T Consensus 373 i~v~~G~~V~AGepIa~~G~s 393 (420)
T COG4942 373 ILVNPGQFVKAGEPIALVGSS 393 (420)
T ss_pred eeecCCCEeecCCchhhccCC
No 389
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=70.24 E-value=22 Score=37.44 Aligned_cols=134 Identities=14% Similarity=0.159 Sum_probs=80.1
Q ss_pred EEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCC
Q psy15251 11 ILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYG 89 (720)
Q Consensus 11 iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g 89 (720)
|||.| +|..+..+.+.+. -++++++++... + +..|.+.+.++.++.++|.|+-.-.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-------------~---------Ditd~~~v~~~i~~~~PDvVIn~AA 59 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE-------------L---------DITDPDAVLEVIRETRPDVVINAAA 59 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCcc-------------c---------cccChHHHHHHHHhhCCCEEEECcc
Confidence 89998 5788999999888 668887774321 1 4468889999999999999886542
Q ss_pred C----Cccc-------------HHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHH
Q psy15251 90 F----LSEN-------------AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILME 152 (720)
Q Consensus 90 ~----lsE~-------------~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~ 152 (720)
+ ..|+ ..++++|.+.|.+++..|.+-+-. ++|. .-..+...|.|-... -.+.-.-+.
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFD-G~~~---~~Y~E~D~~~P~nvY--G~sKl~GE~ 133 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFD-GEKG---GPYKETDTPNPLNVY--GRSKLAGEE 133 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEec-CCCC---CCCCCCCCCCChhhh--hHHHHHHHH
Confidence 2 1121 134677888888877666555431 2331 112334455555444 222222233
Q ss_pred HHHHh-CCcEEEeecCCCCCcc
Q psy15251 153 QAERI-GYPLMIKAVRGGGGKG 173 (720)
Q Consensus 153 ~~~~i-g~PvvvKp~~g~Gg~G 173 (720)
++... ..=+|+..+.-.|..|
T Consensus 134 ~v~~~~~~~~I~Rtswv~g~~g 155 (281)
T COG1091 134 AVRAAGPRHLILRTSWVYGEYG 155 (281)
T ss_pred HHHHhCCCEEEEEeeeeecCCC
Confidence 34333 3336776665555544
No 390
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=70.13 E-value=21 Score=38.41 Aligned_cols=76 Identities=7% Similarity=-0.089 Sum_probs=48.7
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCC--cccccc-------cEEEEeCCCCCcccccCHHHHHHHHH
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADA--LHVKMA-------DEAYRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~--~~~~~a-------D~~~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
.+++||.|+ |-++..+++.+.+.|++++++....+... ....+. .....+ ..+..|.+.+.++.+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-----YGDLSDASSLRRWLD 80 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEE-----EecCCCHHHHHHHHH
Confidence 568999995 88999999999999999988854322110 000111 011111 125567778888888
Q ss_pred HcCCCEEEeCC
Q psy15251 78 RSQCQAIHPGY 88 (720)
Q Consensus 78 ~~~~daI~pg~ 88 (720)
..++|.|+-.-
T Consensus 81 ~~~~d~Vih~A 91 (340)
T PLN02653 81 DIKPDEVYNLA 91 (340)
T ss_pred HcCCCEEEECC
Confidence 77888776443
No 391
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.01 E-value=14 Score=38.03 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.|++||.|+ +.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999985 7899999999999999988885443
No 392
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=69.97 E-value=18 Score=37.85 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=46.3
Q ss_pred CCCeeecCCcceeeEE-ecCCCCeee---------------------CCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCC
Q psy15251 648 DPSKVVSPMPGMVDKV-LVQPGQAVK---------------------TGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAG 705 (720)
Q Consensus 648 ~~~~v~ap~~g~v~~~-~v~~G~~V~---------------------~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g 705 (720)
++..|.||..|+|..+ .+++++.+. .|..+..-=+=+..|-++||.+|+|.+...-+|
T Consensus 68 ~~~~ivSPaDG~v~~~~~i~~~~~~~vKg~~y~l~~lL~~~~~~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG 147 (265)
T PRK03934 68 DPNIFISPCDSLITECGSLEEDKALQIKGMEYSIEELLGESNSELVNGFDYINFYLSPKDYHRYHAPCDLEILEARYIPG 147 (265)
T ss_pred CCCEEEECCCcEEEEEEEECCCCEEEECCccccHHHHcCCcchhhcCCcEEEEEEECcceEEEEeccCCcEEEEEEEcCC
Confidence 4467999999999988 566665332 244444444557789999999999999999999
Q ss_pred Cccc
Q psy15251 706 QSIQ 709 (720)
Q Consensus 706 ~~v~ 709 (720)
+...
T Consensus 148 ~~~~ 151 (265)
T PRK03934 148 KLYP 151 (265)
T ss_pred eeec
Confidence 8544
No 393
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.97 E-value=12 Score=38.47 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
|+..+...|++||.|+ |.++..+++.+.+.|+++++++.
T Consensus 1 ~~~~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 1 MMNQRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CcccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4333334578999985 78999999999999999887754
No 394
>KOG0368|consensus
Probab=69.94 E-value=57 Score=41.43 Aligned_cols=137 Identities=13% Similarity=0.083 Sum_probs=75.3
Q ss_pred eEEEEEEECCEEEEEEEEE-eCcEEEEEEeCCCeeEEEEeecccccccCCceeEEEeeecCe-EEEEEEEECCeEEEEE-
Q psy15251 547 VKTVQIQHLNKEYNVQVTL-SAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGR-IRSSVVCLDGSVSVFT- 623 (720)
Q Consensus 547 ~~~~~~~~~~~~~~v~v~~-~~~~~~v~i~~~~~~~v~~~~~~~~~~~~~~~~l~~~~i~g~-~~~~~~~~~~~~~~~~- 623 (720)
.-.+.+.+++...++.+.. .+|.+-+.+ +|+.+.+-. .+. ...++ +. ||+. ..... +.+-..+-.
T Consensus 624 ~~~y~l~mngs~~~v~v~~L~dggLli~~-~Gks~t~y~-----kee-v~~~r--lt-Idn~t~~fe~--enDpt~LrsP 691 (2196)
T KOG0368|consen 624 SGTYVLRMNGSEVTVGVHQLSDGGLLISL-DGKSYTIYW-----KEE-VDGYR--LT-IDNNTCLFEK--ENDPTVLRSP 691 (2196)
T ss_pred CceEEEEEcCcEEEEEEEEecCCcEEEEE-CCceEEEEE-----eec-cceEE--EE-ECCeEEEEec--CCCcceecCC
Confidence 3477888899999999988 888899999 899887753 111 12222 34 6655 22211 111111111
Q ss_pred -cCceEEEEecCCCCCCCCCCCC--C----CCCCeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeee-EEEEEcCCCe
Q psy15251 624 -KTGSYQFNLPGKSYSLEPEDSA--L----SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKM-EYVITSGTSG 695 (720)
Q Consensus 624 -~~g~~~~~~~~~~~~~~~~~~~--~----~~~~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm-~~~i~a~~~G 695 (720)
.+....+.+.+-.+.. .+.. . --.-.+.|+-+|.|. ..+++|+.+++|++|+.++-.+= ...=--|+.|
T Consensus 692 s~GKLl~ylVedG~hv~--~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~lDdpSkv~~a~pf~G 768 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVE--AGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLTLDDPSKVQHALPFHG 768 (2196)
T ss_pred CCccceEEEecCCCcee--cCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEeecCChhhhcccCCccc
Confidence 1111111111111100 0000 0 011257899999764 55999999999999999986642 2222347777
Q ss_pred EEE
Q psy15251 696 IIE 698 (720)
Q Consensus 696 ~v~ 698 (720)
..-
T Consensus 769 ~~p 771 (2196)
T KOG0368|consen 769 SFP 771 (2196)
T ss_pred ccc
Confidence 643
No 395
>PRK12939 short chain dehydrogenase; Provisional
Probab=69.87 E-value=15 Score=37.19 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=28.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
..+++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999985 899999999999999998888543
No 396
>PRK08267 short chain dehydrogenase; Provisional
Probab=69.81 E-value=13 Score=38.09 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=28.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIAN-RGEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
||++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 47899998 47899999999999999988886443
No 397
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=69.62 E-value=32 Score=39.92 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
+-+++||.|+ |.++..+++.|.+.|++++++..+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4578999985 8899999999999999998886543
No 398
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=69.55 E-value=39 Score=33.19 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=46.1
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIAN-RGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||-|+| .|-.+.+|++.+.+.|++++++.-++...... -+..+. ..+..|.+.+.+.. .+.|+|+..+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i~------q~Difd~~~~a~~l--~g~DaVIsA~ 70 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTIL------QKDIFDLTSLASDL--AGHDAVISAF 70 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---ccceee------cccccChhhhHhhh--cCCceEEEec
Confidence 555555 68899999999999999999996554433211 111121 12445655553333 5688999888
Q ss_pred CCC
Q psy15251 89 GFL 91 (720)
Q Consensus 89 g~l 91 (720)
++.
T Consensus 71 ~~~ 73 (211)
T COG2910 71 GAG 73 (211)
T ss_pred cCC
Confidence 865
No 399
>PRK06398 aldose dehydrogenase; Validated
Probab=69.44 E-value=37 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.|++||.|+ +.++..+++.+.+.|++++++..+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 479999985 689999999999999998887543
No 400
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=69.31 E-value=14 Score=38.56 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=44.6
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||+|+ |.++..+++.+.+.|++++++... ..+..+.+.+.++.+..++|.|+-..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------------~~d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------------ccCCCCHHHHHHHHHhCCCCEEEECC
Confidence 5899985 999999999999999998877421 11445777888888887889887544
Q ss_pred C
Q psy15251 89 G 89 (720)
Q Consensus 89 g 89 (720)
+
T Consensus 59 ~ 59 (287)
T TIGR01214 59 A 59 (287)
T ss_pred c
Confidence 3
No 401
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=69.26 E-value=31 Score=35.93 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHH----cC-CCE
Q psy15251 10 SILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVR----SQ-CQA 83 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~----~~-~da 83 (720)
+|||.|+ |.++..+++.|.+.|+++.++..+++.... ..-+.+ .-++.|.+.+..+.+. .+ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~-------~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHV-------KFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCccc-------cccCCCHHHHHHHHhcccCcCCceeE
Confidence 4889986 899999999999999999888655443211 001111 2367888877776643 34 777
Q ss_pred EE
Q psy15251 84 IH 85 (720)
Q Consensus 84 I~ 85 (720)
++
T Consensus 71 v~ 72 (285)
T TIGR03649 71 VY 72 (285)
T ss_pred EE
Confidence 75
No 402
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=69.23 E-value=17 Score=33.10 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.5
Q ss_pred EEEEEcC-cHHHHHHHHHHHH-cCCcEEEEeeCCC
Q psy15251 10 SILIANR-GEIACRIMRTAKK-MGIRVVSVYSDID 42 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~-~G~~~v~v~s~~d 42 (720)
||.|.|. |..+..+++.+.+ .|++++++.....
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 7999998 9999999999998 7999888865444
No 403
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=69.17 E-value=31 Score=42.19 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcHHHHHH-HHHHHHcCCcEEEEeeCCCCCCccccccc--EEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 7 VLDSILIANRGEIACRI-MRTAKKMGIRVVSVYSDIDADALHVKMAD--EAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~i-ira~~~~G~~~v~v~s~~d~~~~~~~~aD--~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
.+++++|+|-|.++... ++.|++.|++|.+.+...... ...+.+ -.+..+ . +.+.+ .++|.
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~--~~~L~~~gi~~~~g-------~-~~~~~------~~~d~ 66 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKT--VEKLKAKGARFFLG-------H-QEEHV------PEDAV 66 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChH--HHHHHHCCCEEeCC-------C-CHHHc------CCCCE
Confidence 35689999999999998 999999999987764322211 111111 112211 0 11111 24677
Q ss_pred EEeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 84 IHPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 84 I~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
|+...|.-..++.+.. +.+.|+++++
T Consensus 67 vV~SpgI~~~~p~~~~-a~~~gi~v~~ 92 (809)
T PRK14573 67 VVYSSSISKDNVEYLS-AKSRGNRLVH 92 (809)
T ss_pred EEECCCcCCCCHHHHH-HHHCCCcEEe
Confidence 7766665445565544 4557777763
No 404
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=69.13 E-value=5.2 Score=42.76 Aligned_cols=33 Identities=36% Similarity=0.763 Sum_probs=26.0
Q ss_pred eeecCCcceee-------------------------EEecCCCCeeeCCCeEEEEEee
Q psy15251 651 KVVSPMPGMVD-------------------------KVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 651 ~v~ap~~g~v~-------------------------~~~v~~G~~V~~g~~l~~~eam 683 (720)
.|+||+.|.|. ++.+++|+.|.+|++|+.|-.+
T Consensus 136 ~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~~ 193 (328)
T PF12700_consen 136 QIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIADL 193 (328)
T ss_dssp HEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEEE
T ss_pred ccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeeccC
Confidence 39999999999 9999999999999999888544
No 405
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=69.07 E-value=21 Score=38.45 Aligned_cols=75 Identities=9% Similarity=-0.037 Sum_probs=48.4
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCC--cccccc--------cEEEEeCCCCCcccccCHHHHHHHHH
Q psy15251 9 DSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADA--LHVKMA--------DEAYRLEGKSSLDTYLNQAKILDIAV 77 (720)
Q Consensus 9 ~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~--~~~~~a--------D~~~~i~~~~~~~~~~~~~~i~~~a~ 77 (720)
|+|||.|+ |-++..+++.+.+.|++++++....+... ....+. .....+ ..+..|.+.+.++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~l~~~~~ 75 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLH-----YGDLTDSSNLRRIID 75 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEE-----EeccCCHHHHHHHHH
Confidence 58999985 88999999999999999988854322100 000000 001111 125667788888888
Q ss_pred HcCCCEEEeCC
Q psy15251 78 RSQCQAIHPGY 88 (720)
Q Consensus 78 ~~~~daI~pg~ 88 (720)
..++|.|+-.-
T Consensus 76 ~~~~d~ViH~A 86 (343)
T TIGR01472 76 EIKPTEIYNLA 86 (343)
T ss_pred hCCCCEEEECC
Confidence 88889877443
No 406
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=69.00 E-value=9.5 Score=45.80 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCC
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDID 42 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d 42 (720)
+.+++|.|+|.|..+..|+..+...|++|++++.+++
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4688999999999999999999999999999965543
No 407
>PRK06483 dihydromonapterin reductase; Provisional
Probab=68.90 E-value=19 Score=36.33 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
|.|++||.|+ +.++..+++.+.+.|+++++++.++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 4679999985 7899999999999999998886443
No 408
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=68.70 E-value=43 Score=34.41 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=27.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
.+||||+|.|.++..+++.+.++|+..+.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lv 54 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLL 54 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999999999877663
No 409
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=68.63 E-value=5.8 Score=44.32 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=32.2
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK 684 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamk 684 (720)
..+.||..|+|.++++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 46899999999999999999999999999998654
No 410
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=68.53 E-value=5.2 Score=36.48 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CcceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 656 MPGMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 656 ~~g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
+.|+=-+++|++||+|++||+|+.+.-
T Consensus 77 L~G~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 77 LNGEGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred cCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 556668899999999999999998874
No 411
>PRK06182 short chain dehydrogenase; Validated
Probab=68.51 E-value=16 Score=37.75 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=46.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHc-----CC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRS-----QC 81 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~-----~~ 81 (720)
.+++||.|+ |.++..+++.+.+.|++++++..+.+........--..+.. +..|.+.+.+++++. ++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~-------Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSL-------DVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEe-------eCCCHHHHHHHHHHHHHhcCCC
Confidence 468999985 78999999999999999988864433211000000112222 445555555544432 68
Q ss_pred CEEEeCCCC
Q psy15251 82 QAIHPGYGF 90 (720)
Q Consensus 82 daI~pg~g~ 90 (720)
|.++-..|.
T Consensus 76 d~li~~ag~ 84 (273)
T PRK06182 76 DVLVNNAGY 84 (273)
T ss_pred CEEEECCCc
Confidence 888866553
No 412
>PLN00200 argininosuccinate synthase; Provisional
Probab=68.47 E-value=39 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCEEEEE-cCcHHHHHHHHHHHHc-CCcEEEEeeC
Q psy15251 7 VLDSILIA-NRGEIACRIMRTAKKM-GIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~-~~G~~a~~iira~~~~-G~~~v~v~s~ 40 (720)
|++||+|+ .+|--..-++..+++. |+++++++-+
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~~G~eViav~id 39 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRENYGCEVVCFTAD 39 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 45677666 4555566666666665 9999988644
No 413
>PRK06057 short chain dehydrogenase; Provisional
Probab=68.32 E-value=16 Score=37.45 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
..+++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4589999996 889999999999999998888544
No 414
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=68.30 E-value=11 Score=41.55 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=57.0
Q ss_pred CCCEEEEEcC--cHHHHHHHHHHHHcCCcEEEEee-C--------CC-CCCcccccccEEEEeCCCC---Ccccc-cCHH
Q psy15251 7 VLDSILIANR--GEIACRIMRTAKKMGIRVVSVYS-D--------ID-ADALHVKMADEAYRLEGKS---SLDTY-LNQA 70 (720)
Q Consensus 7 ~~~~iLI~~~--G~~a~~iira~~~~G~~~v~v~s-~--------~d-~~~~~~~~aD~~~~i~~~~---~~~~~-~~~~ 70 (720)
.-+|||+.|. ......+++.+.+.|..+|+-.. . .+ ..-+...+|+.....+.+. ...+. ...+
T Consensus 232 ~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~ 311 (380)
T TIGR02263 232 DNCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGK 311 (380)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHH
Confidence 3479999992 22246788899999999876621 0 00 1122334565553322111 11121 2467
Q ss_pred HHHHHHHHcCCCEEEeCC-----CCCcccHHHHHHHHHCCCeEe
Q psy15251 71 KILDIAVRSQCQAIHPGY-----GFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 71 ~i~~~a~~~~~daI~pg~-----g~lsE~~~~a~~~~~~gl~~~ 109 (720)
.|.+++++.++|+|+--. -+..|...+.+.+++.|||++
T Consensus 312 ~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 312 YLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 799999999999988321 011233444455555555544
No 415
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=68.27 E-value=16 Score=39.39 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.2
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEe
Q psy15251 9 DSILIANR-GEIACRIMRTAKKM-GIRVVSVY 38 (720)
Q Consensus 9 ~~iLI~~~-G~~a~~iira~~~~-G~~~v~v~ 38 (720)
++|||.|+ |-++..+++.|.+. |++++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 47999996 99999999999876 79988885
No 416
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.11 E-value=11 Score=45.35 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCC
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDID 42 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d 42 (720)
+.+++|.|+|.|..+..|+..+...|++|++++.+++
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4678999999999999999999999999999865544
No 417
>PRK06194 hypothetical protein; Provisional
Probab=67.90 E-value=21 Score=37.13 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
..+++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999985 789999999999999998887543
No 418
>PRK00208 thiG thiazole synthase; Reviewed
Probab=67.73 E-value=65 Score=33.14 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=82.2
Q ss_pred ccCHHHHHHHHHHc---CCCEEEeCCCCCcccHHHHHHHHHCCCeEeCC--C-HHHHHHhcCHHHHHHHHHHCCCCCCCc
Q psy15251 66 YLNQAKILDIAVRS---QCQAIHPGYGFLSENAEFANAVEGNRLIFVGP--S-SEAIRNMGIKSTSKEIMIKAEVPVIPG 139 (720)
Q Consensus 66 ~~~~~~i~~~a~~~---~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp--~-~~~i~~~~DK~~~r~~l~~~Gvp~p~~ 139 (720)
+.|....++.++.. +...+ | ..++++.+++.++++|..++-| + ..+-.-..|+...+.+.+..++|+.-.
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vl-p---yc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 106 LPDPIETLKAAEILVKEGFVVL-P---YCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEE-E---EeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 35778888888888 77643 3 2347799999999999877744 0 011112345666777777777887665
Q ss_pred ccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCCCc
Q psy15251 140 YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSK 202 (720)
Q Consensus 140 ~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~~~ 202 (720)
-- +.+++++.++.+ +|.=-|+ -+-+|....|+....++|..+....+.+|..+.
T Consensus 182 aG--I~tpeda~~Ame-lGAdgVl------V~SAItka~dP~~ma~af~~Av~aGr~a~~ag~ 235 (250)
T PRK00208 182 AG--IGTPSDAAQAME-LGADAVL------LNTAIAVAGDPVAMARAFKLAVEAGRLAYLAGR 235 (250)
T ss_pred CC--CCCHHHHHHHHH-cCCCEEE------EChHhhCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 43 888999887664 5643222 134555667888989999888877776664433
No 419
>PRK06180 short chain dehydrogenase; Provisional
Probab=67.28 E-value=18 Score=37.57 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
++++||.|+ |.++..+++.+.+.|++++++..++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence 578999985 7899999999999999998886543
No 420
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=67.27 E-value=69 Score=33.83 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=80.1
Q ss_pred CCCEEEEEcCc----HHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCC
Q psy15251 7 VLDSILIANRG----EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQ 82 (720)
Q Consensus 7 ~~~~iLI~~~G----~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 82 (720)
...++||++++ ..+.-...++.+.|--.|.+.+..+....-..+..+.+.. .+.+.....+......+|
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~-------~~~~~~~~~~~~~~~~~~ 103 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVI-------EVEGKKLLEERELVERAD 103 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEe-------ecccchhhHHhhhhccCC
Confidence 35689999876 3355667778888888777776665443334445555543 233333233334446677
Q ss_pred EEEeCCCCCcc--cHHHHHHHHHCC-CeEeCCCHHHHHHhc---------------CHHHHHHHHHHCCCCCCCcccCCC
Q psy15251 83 AIHPGYGFLSE--NAEFANAVEGNR-LIFVGPSSEAIRNMG---------------IKSTSKEIMIKAEVPVIPGYHGED 144 (720)
Q Consensus 83 aI~pg~g~lsE--~~~~a~~~~~~g-l~~~Gp~~~~i~~~~---------------DK~~~r~~l~~~Gvp~p~~~~~~~ 144 (720)
+|..|.|+-.+ -..+.+.+.... .+.+ -+++.+..+. ++-++++++ |..+++.. .
T Consensus 104 avviGpGlG~~~~~~~~~~~~l~~~~~p~V-iDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~---g~~~~~~~---~ 176 (284)
T COG0063 104 AVVIGPGLGRDAEGQEALKELLSSDLKPLV-LDADALNLLAELPDLLDERKVVLTPHPGEFARLL---GTEVDEIE---V 176 (284)
T ss_pred EEEECCCCCCCHHHHHHHHHHHhccCCCEE-EeCcHHHHHHhCcccccCCcEEECCCHHHHHHhc---CCcccccc---c
Confidence 77766554322 223333333333 4443 3566655322 222333333 32333311 3
Q ss_pred CCHHHHHHHHHHhCCcEEEeec
Q psy15251 145 QNEEILMEQAERIGYPLMIKAV 166 (720)
Q Consensus 145 ~s~~e~~~~~~~ig~PvvvKp~ 166 (720)
+..+.+++++++++-=+|+|-.
T Consensus 177 ~r~~~a~~~a~~~~~vvVLKG~ 198 (284)
T COG0063 177 DRLEAARELAAKYGAVVVLKGA 198 (284)
T ss_pred chHHHHHHHHHHcCCEEEEeCC
Confidence 4577888889998888899854
No 421
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.98 E-value=8.6 Score=37.24 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=33.6
Q ss_pred CCCEEEEEcCcHH-HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEE
Q psy15251 7 VLDSILIANRGEI-ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAY 55 (720)
Q Consensus 7 ~~~~iLI~~~G~~-a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~ 55 (720)
.-+++||+|.|+. +..+++.+.+.|.+++++....+........+|-.+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVI 92 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVI 92 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEE
Confidence 3489999999996 888999999999986666433222222344455444
No 422
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=66.96 E-value=19 Score=32.77 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=46.1
Q ss_pred EEEEEcC--cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCC-CcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 10 SILIANR--GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKS-SLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 10 ~iLI~~~--G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~-~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
|||+++. .......++.+++.|+++.++....+........--..+.++-.. ..-.+...-.+..++++.++|.||.
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~ 80 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHC 80 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEE
Confidence 3455543 334778999999999999999774443111111111233332111 1223333446788899999999995
Q ss_pred CC
Q psy15251 87 GY 88 (720)
Q Consensus 87 g~ 88 (720)
..
T Consensus 81 h~ 82 (139)
T PF13477_consen 81 HT 82 (139)
T ss_pred ec
Confidence 44
No 423
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.94 E-value=14 Score=37.21 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEE
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSV 37 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v 37 (720)
|++++||.|+ |.++..+++.+.+.|++++++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4579999985 799999999999999998877
No 424
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=66.92 E-value=15 Score=41.24 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeC----CCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSD----IDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQ 82 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~----~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 82 (720)
..||+.|.+++.-+..++..++++|.+++.+.+. .+.......+.+..+.+ +..|...+.+++++.++|
T Consensus 299 ~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~-------~~~d~~e~~~~i~~~~pD 371 (421)
T cd01976 299 EGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLY-------DDVTHYELEEFVKRLKPD 371 (421)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEE-------cCCCHHHHHHHHHHhCCC
Confidence 3589999987777788888999999999987542 11011111222333333 224677888999999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 83 AIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 83 aI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
.++.+.- -....++.|+|+.
T Consensus 372 liig~~~-------~~~~a~k~giP~~ 391 (421)
T cd01976 372 LIGSGIK-------EKYVFQKMGIPFR 391 (421)
T ss_pred EEEecCc-------chhhhhhcCCCeE
Confidence 9885431 1345677888873
No 425
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.87 E-value=28 Score=39.59 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=54.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc-cccccE-EEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALH-VKMADE-AYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~-~~~aD~-~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
.|+++|+|-|..+..+++.|++.|.++++.+.+....... ..+.+. .+..+ ..+.+.+ .++|.|+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~------~~~d~vV 74 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVET-------EASAQRL------AAFDVVV 74 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeC-------CCChHHc------cCCCEEE
Confidence 5799999999999999999999999988775432211111 111111 11111 1122222 3578888
Q ss_pred eCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 86 PGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 86 pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
...|.-..++. ...+.+.|+++++
T Consensus 75 ~SpgI~~~~p~-~~~a~~~~i~i~~ 98 (468)
T PRK04690 75 KSPGISPYRPE-ALAAAARGTPFIG 98 (468)
T ss_pred ECCCCCCCCHH-HHHHHHcCCcEEE
Confidence 77765444444 4455778999884
No 426
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=66.83 E-value=10 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.-++|.|+|-|.|+..+++.++.+|.++++++...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 46899999999999999999999999988875443
No 427
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=66.81 E-value=27 Score=33.10 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=49.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHH---cCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 9 DSILIANRGEIACRIMRTAKK---MGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 9 ~~iLI~~~G~~a~~iira~~~---~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
++.++++.+..+..+.+.+++ .|++++.+.++..... .....+..+ + .+.+.+.+++++.++|-|+
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~-~~~~~~~~~-l---------g~~~~l~~~~~~~~id~v~ 146 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPSDR-GPEIDGVPV-L---------GDLDDLPELVREHDIDEVI 146 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGT-T-EETTEEE-E-----------GGGHHHHHHHHT--EEE
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchhhc-cCcccCcee-E---------cCHHHHHHHHHhCCCCEEE
Confidence 455777788888777777766 7999888865543322 111222222 2 3567889999999999887
Q ss_pred eCCCCCcc--cHHHHHHHHHCCCeE
Q psy15251 86 PGYGFLSE--NAEFANAVEGNRLIF 108 (720)
Q Consensus 86 pg~g~lsE--~~~~a~~~~~~gl~~ 108 (720)
-......+ ...+.+.|++.++.+
T Consensus 147 ial~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 147 IALPWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp E--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEE
Confidence 66543211 224566778877764
No 428
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.67 E-value=20 Score=36.77 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=28.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
..|++||.|+ +.++..+++.+.+.|++++++..+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3588999985 788999999999999998888554
No 429
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.64 E-value=16 Score=36.80 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=27.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.+++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 478999984 889999999999999998887543
No 430
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.53 E-value=27 Score=39.26 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=53.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc--cccc--cEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALH--VKMA--DEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~--~~~a--D~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
.|+++|+|.|.++..+++.+.+.|++|++++.+....... .++. ...+..+ ++.+ . ...++|+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~------~~~~--~-----~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLG------EYPE--E-----FLEGVDL 71 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeC------Ccch--h-----HhhcCCE
Confidence 5799999999999999999999999988875433111100 0000 1111111 1111 1 1235898
Q ss_pred EEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 84 IHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 84 I~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
|+-..|....++ ....+++.|++++
T Consensus 72 vv~~~g~~~~~~-~~~~a~~~~i~~~ 96 (450)
T PRK14106 72 VVVSPGVPLDSP-PVVQAHKKGIEVI 96 (450)
T ss_pred EEECCCCCCCCH-HHHHHHHCCCcEE
Confidence 887766433344 5666677899887
No 431
>PLN02214 cinnamoyl-CoA reductase
Probab=66.45 E-value=29 Score=37.57 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 6 CVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 6 ~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.+++++||.|+ |-++..+++.+.+.|++|+++...
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 35679999996 899999999999999999887544
No 432
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.36 E-value=15 Score=41.81 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc--cccc--cEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALH--VKMA--DEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~--~~~a--D~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
.++++|+|.|.+++.+++.+++.|+++++++..+...... ..+. .-.+..+. +.+ ...++|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~--------~~~------~~~~~D~ 81 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGP--------GPT------LPEDTDL 81 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECC--------Ccc------ccCCCCE
Confidence 4689999999999999999999999988775332111110 1111 11222221 000 1245888
Q ss_pred EEeCCCCCcccHHHHHHHHHCCCeEeCCCHHH
Q psy15251 84 IHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115 (720)
Q Consensus 84 I~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~ 115 (720)
|+-+.|.-..+ .+...+.+.|+++++ ..+.
T Consensus 82 Vv~s~Gi~~~~-~~~~~a~~~gi~v~~-~~e~ 111 (480)
T PRK01438 82 VVTSPGWRPDA-PLLAAAADAGIPVWG-EVEL 111 (480)
T ss_pred EEECCCcCCCC-HHHHHHHHCCCeecc-hHHH
Confidence 88777754444 445556788999863 3443
No 433
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.16 E-value=24 Score=40.14 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=51.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccE---EEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADE---AYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~---~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
+++++|+|-|..++.+++.+++.|+.+.+.+.+... ...+.++ .+..+ ..+.+.+ .++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~---~~~~l~~~gi~~~~~-------~~~~~~~------~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA---RHKLIEVTGVADIST-------AEASDQL------DSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH---HHHHHHhcCcEEEeC-------CCchhHh------cCCCEE
Confidence 578999999999999999999999976665422211 1111121 12111 0111212 256778
Q ss_pred EeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 85 HPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
+-..|.-..++.+. .+.+.|+++++
T Consensus 79 V~Spgi~~~~p~~~-~a~~~gi~v~~ 103 (473)
T PRK00141 79 VTSPGWRPDSPLLV-DAQSQGLEVIG 103 (473)
T ss_pred EeCCCCCCCCHHHH-HHHHCCCceee
Confidence 86665444455544 45778998774
No 434
>PRK05865 hypothetical protein; Provisional
Probab=65.83 E-value=70 Score=39.18 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=66.0
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||.|+ |.++..+++.+.+.|++++++......... . -. ..+. .+..|.+.+.++.+ ++|+|+-..
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~-~-~v-~~v~-------gDL~D~~~l~~al~--~vD~VVHlA 69 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWP-S-SA-DFIA-------ADIRDATAVESAMT--GADVVAHCA 69 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcc-c-Cc-eEEE-------eeCCCHHHHHHHHh--CCCEEEECC
Confidence 7999985 999999999999999999888543211100 0 00 1222 25566677766664 578776543
Q ss_pred CCCc---c-c----HHHHHHHHHCCC-eEeCCCHHHHHHhcCHHHHHHHHHHCCCCCC
Q psy15251 89 GFLS---E-N----AEFANAVEGNRL-IFVGPSSEAIRNMGIKSTSKEIMIKAEVPVI 137 (720)
Q Consensus 89 g~ls---E-~----~~~a~~~~~~gl-~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p 137 (720)
+... + | ..+.+++.+.|+ .++-.+... |..+.+++.+.|+++.
T Consensus 70 a~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~v 121 (854)
T PRK05865 70 WVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEWV 121 (854)
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCEE
Confidence 3211 1 1 123556666664 233222221 7788888888888763
No 435
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=65.83 E-value=6.7 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=32.1
Q ss_pred CeeecCCcceeeEEecCCCCe-eeCCCeEEEEEeee
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQA-VKTGDPIMVIIAMK 684 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~-V~~g~~l~~~eamk 684 (720)
..+.||..|+|.++++++|+. |..|++|++||...
T Consensus 43 ~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 43 MEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred eEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 469999999999999999999 99999999997643
No 436
>PRK07577 short chain dehydrogenase; Provisional
Probab=65.76 E-value=41 Score=33.59 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=44.5
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHH----HHHHcCCCE
Q psy15251 9 DSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILD----IAVRSQCQA 83 (720)
Q Consensus 9 ~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~----~a~~~~~da 83 (720)
|++||.|+ |.++..+++.+.+.|++++++..+..... ..+.+.. +..+.+.+.+ +....++|.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-----~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~d~ 71 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDF-----PGELFAC-------DLADIEQTAATLAQINEIHPVDA 71 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccccc-----CceEEEe-------eCCCHHHHHHHHHHHHHhCCCcE
Confidence 68899985 78999999999999999988865443311 1123322 3344444333 333447888
Q ss_pred EEeCCCC
Q psy15251 84 IHPGYGF 90 (720)
Q Consensus 84 I~pg~g~ 90 (720)
++-..+.
T Consensus 72 vi~~ag~ 78 (234)
T PRK07577 72 IVNNVGI 78 (234)
T ss_pred EEECCCC
Confidence 8765543
No 437
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=65.70 E-value=1e+02 Score=31.85 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=82.5
Q ss_pred CHHHHHHHHHH---cCCCEEEeCCCCCcccHHHHHHHHHCCCeEe---CCCHHHHHHhcCHHHHHHHHHHCCCCCCCccc
Q psy15251 68 NQAKILDIAVR---SQCQAIHPGYGFLSENAEFANAVEGNRLIFV---GPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYH 141 (720)
Q Consensus 68 ~~~~i~~~a~~---~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~---Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~ 141 (720)
|....+++++. .++. |+| +.+.++.+++.+++.|...+ |.+.-+=.-+.|+...+.+.+...+|+.-..-
T Consensus 122 D~~etl~Aae~Lv~eGF~-VlP---Y~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAG 197 (267)
T CHL00162 122 DPIGTLKAAEFLVKKGFT-VLP---YINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAG 197 (267)
T ss_pred ChHHHHHHHHHHHHCCCE-Eee---cCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCC
Confidence 34445555544 4443 555 45578999999999997643 34444445567999999999999999877654
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHHHHHHHHHHHHHHHHhcCCC
Q psy15251 142 GEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFND 200 (720)
Q Consensus 142 ~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~f~~ 200 (720)
+.+.+++..+. ++|.--|+ ...+|.+..|+.++..+++.+....+.+|-.
T Consensus 198 --Igt~sDa~~Am-ElGaDgVL------~nSaIakA~dP~~mA~a~~~AV~AGR~A~~A 247 (267)
T CHL00162 198 --IGTPSEASQAM-ELGASGVL------LNTAVAQAKNPEQMAKAMKLAVQAGRLAYLA 247 (267)
T ss_pred --cCCHHHHHHHH-HcCCCEEe------ecceeecCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 77888887654 56654332 1245677889999999999888776655533
No 438
>PRK06125 short chain dehydrogenase; Provisional
Probab=65.56 E-value=9.9 Score=39.02 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=49.0
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCccc-cc----ccEEEEeCCCCCcccccCHHHHHH
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHV-KM----ADEAYRLEGKSSLDTYLNQAKILD 74 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~-~~----aD~~~~i~~~~~~~~~~~~~~i~~ 74 (720)
|+|... .|++||.|. +.++..+++.+.+.|+++++++.+.+...... .+ ......+. -+..+.+.+.+
T Consensus 1 ~~~~~~-~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-----~D~~~~~~~~~ 74 (259)
T PRK06125 1 MDLHLA-GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHA-----LDLSSPEAREQ 74 (259)
T ss_pred CCcCCC-CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEE-----ecCCCHHHHHH
Confidence 566433 478999986 68999999999999999888865432111100 00 11111111 13455666666
Q ss_pred HHHHc-CCCEEEeCCC
Q psy15251 75 IAVRS-QCQAIHPGYG 89 (720)
Q Consensus 75 ~a~~~-~~daI~pg~g 89 (720)
+.++. .+|.++-..|
T Consensus 75 ~~~~~g~id~lv~~ag 90 (259)
T PRK06125 75 LAAEAGDIDILVNNAG 90 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 66654 4787765544
No 439
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=65.03 E-value=15 Score=39.37 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=39.5
Q ss_pred CeeecCCcceeeEEecCCCCeeeCCCeEEEEEeeeeEEEEEcCCCeEEEEEEcCCCCcccCCCeEEEEe
Q psy15251 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIV 718 (720)
Q Consensus 650 ~~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eamkm~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 718 (720)
..|.|+..|+|+.+ |+...---.+++|+-..-...+.+..+ ++.|++||.|++||.|+++.
T Consensus 230 ~pV~Aaa~G~Vv~a----g~~~~gyGn~ViI~H~~g~~S~Yahl~----~i~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 230 QAIIATADGRVVYA----GNALRGYGNLIIIKHNDDYLSAYAHND----TMLVREQQEVKAGQKIATMG 290 (319)
T ss_pred CeEEeccCeEEEEE----eeccCCcceEEEEEeCCceEEEeeCCC----ccccCCcCEECCCCeEEeEc
Confidence 46888888888666 322222134566665555566666543 45678888888888888764
No 440
>PRK06847 hypothetical protein; Provisional
Probab=64.96 E-value=11 Score=41.23 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
.+++|+|+|+|..++.++..|++.|++++++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 36799999999999999999999999988774
No 441
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=64.79 E-value=15 Score=36.50 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=39.5
Q ss_pred EEEEEcCcHH--HHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCC
Q psy15251 10 SILIANRGEI--ACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKS 61 (720)
Q Consensus 10 ~iLI~~~G~~--a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~ 61 (720)
-|+|.|+|+. -..++..+|+.|..++++.+++++.. .+.+|-.+.+|...
T Consensus 90 viaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsL--ak~aDvvl~ip~~~ 141 (202)
T COG0794 90 VIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSL--AKAADVVLVIPVKT 141 (202)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChH--HHhcCeEEEccCcc
Confidence 3566678876 56889999999999999987777654 56799999887543
No 442
>PRK06953 short chain dehydrogenase; Provisional
Probab=64.75 E-value=24 Score=35.25 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIAN-RGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|+++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECC
Confidence 46889988 5789999999999999998888544
No 443
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=64.62 E-value=35 Score=34.01 Aligned_cols=119 Identities=9% Similarity=0.047 Sum_probs=60.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCc-EEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEe
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIR-VVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~-~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~p 86 (720)
-++|||+|.|..+..+++.+.++|+. +++++. |.-..+ .+.-+.+. .+ ..-...-.+.+.+.+++.+.+.-+-
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~--d~ve~s-NL~Rq~l~-~~--~diG~~Ka~~~~~~l~~~np~v~i~ 94 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDD--DHVDLS-NLQRQILF-TE--EDVGRPKVEVAAQRLRELNSDIQVT 94 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecC--CEEccc-chhhhhcc-Ch--hhCCChHHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999995 444432 211110 00001110 00 0000122344455555555443222
Q ss_pred CC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCC
Q psy15251 87 GY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP 138 (720)
Q Consensus 87 g~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~ 138 (720)
.+ ..+. ...+...+....+.+...+.- ..+....+++.++++|..-
T Consensus 95 ~~~~~i~-~~~~~~~~~~~D~Vi~~~d~~-----~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 95 ALKERVT-AENLELLINNVDLVLDCTDNF-----ATRYLINDACVALGTPLIS 141 (202)
T ss_pred EehhcCC-HHHHHHHHhCCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEE
Confidence 22 1221 123344555666655443222 1344566778888887654
No 444
>PRK07062 short chain dehydrogenase; Provisional
Probab=64.54 E-value=23 Score=36.33 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=32.1
Q ss_pred CCCccCCCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 1 MTIASCVLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
|++...+-|++||.|+ +.++..+++.+.+.|+++++++.+.
T Consensus 1 m~~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 1 MMQIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE 42 (265)
T ss_pred CCccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5544344578999985 6789999999999999988886543
No 445
>PRK07856 short chain dehydrogenase; Provisional
Probab=64.50 E-value=42 Score=34.16 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 478999985 6899999999999999998886544
No 446
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.33 E-value=27 Score=39.89 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCccccccc--EEEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMAD--EAYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD--~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
..++++|+|-|.+++.+++.++..|.++++.+..+.. . ..+.+ -.+..+ ....+.+ .++|.|
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~--~-~~l~~~g~~~~~~-------~~~~~~l------~~~D~V 74 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA--L-RPHAERGVATVST-------SDAVQQI------ADYALV 74 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH--H-HHHHhCCCEEEcC-------cchHhHh------hcCCEE
Confidence 4579999999999999999999999988775422111 1 11111 111111 0111111 246888
Q ss_pred EeCCCCCcccHHHHHHHHHCCCeEeC
Q psy15251 85 HPGYGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 85 ~pg~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
+-..|.-..++. ...+.+.|+++++
T Consensus 75 V~SpGi~~~~p~-~~~a~~~gi~v~~ 99 (488)
T PRK03369 75 VTSPGFRPTAPV-LAAAAAAGVPIWG 99 (488)
T ss_pred EECCCCCCCCHH-HHHHHHCCCcEee
Confidence 866665444544 4555678999874
No 447
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=63.96 E-value=6.5 Score=34.57 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
..+++||+|+|..|.+-++.+.+.|-++.++..+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3579999999999999999999999998887544
No 448
>PRK04527 argininosuccinate synthase; Provisional
Probab=63.73 E-value=91 Score=34.59 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCEEEEE-cCcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIA-NRGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~-~~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.+|++|+ .+|--..-++..+++.|+++++++-+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d 35 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQERGYAVHTVFAD 35 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEE
Confidence 3466665 45555556666788899999998654
No 449
>PRK08163 salicylate hydroxylase; Provisional
Probab=63.64 E-value=11 Score=41.35 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=28.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEee
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s 39 (720)
..+|+|+|+|..++.++..|++.|+++.++..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 35899999999999999999999999888744
No 450
>PRK09135 pteridine reductase; Provisional
Probab=63.61 E-value=30 Score=34.89 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=28.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
.+++||.|+ |.++..+++.+.+.|+++++++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 478999985 78899999999999999988864
No 451
>PRK07774 short chain dehydrogenase; Provisional
Probab=63.53 E-value=25 Score=35.64 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.7
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.|++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999986 889999999999999999888644
No 452
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=63.51 E-value=9.9 Score=41.89 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEee
Q psy15251 6 CVLDSILIANRGEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 6 ~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s 39 (720)
++...|+|+|+|..++.++..+.+.|++++++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~ 37 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEG 37 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeC
Confidence 4456899999999999999999999999888843
No 453
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=63.45 E-value=31 Score=37.29 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=28.5
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
++||||.|+ |-++..+++.+.+.|++|++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 468999996 99999999999999999988853
No 454
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=63.33 E-value=1.3e+02 Score=30.23 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=69.4
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCC
Q psy15251 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGF 90 (720)
Q Consensus 11 iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~ 90 (720)
||-..+-+-++.+++++-+-|++++=+.-+ +..-.+.|..++++.. ++++ |-|-
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~------------------------sp~a~e~I~~l~~~~p-~~lI-GAGT 71 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEITLR------------------------TPAALEAIRALAKEFP-EALI-GAGT 71 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeEEEecC------------------------CCCHHHHHHHHHHhCc-ccEE-cccc
Confidence 555667788999999999999998766211 1112345566666666 5554 5553
Q ss_pred CcccHHHHHHHHHCCCeEeCCC---HHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCc
Q psy15251 91 LSENAEFANAVEGNRLIFVGPS---SEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYP 160 (720)
Q Consensus 91 lsE~~~~a~~~~~~gl~~~Gp~---~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~P 160 (720)
.. ++.-.+.+.++|-.|+-.+ ++.+ +.+.++|+|+.|+. .++.|+..+. +.|+-
T Consensus 72 VL-~~~q~~~a~~aGa~fiVsP~~~~ev~----------~~a~~~~ip~~PG~----~TptEi~~Al-e~G~~ 128 (211)
T COG0800 72 VL-NPEQARQAIAAGAQFIVSPGLNPEVA----------KAANRYGIPYIPGV----ATPTEIMAAL-ELGAS 128 (211)
T ss_pred cc-CHHHHHHHHHcCCCEEECCCCCHHHH----------HHHHhCCCcccCCC----CCHHHHHHHH-HcChh
Confidence 22 4667777888887775422 3333 46678899999984 4777776544 44543
No 455
>PRK12744 short chain dehydrogenase; Provisional
Probab=63.33 E-value=42 Score=34.26 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCccCCCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEee
Q psy15251 1 MTIASCVLDSILIAN-RGEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 1 m~~~~~~~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s 39 (720)
|.+...+.|++||.| .|.++..+++.+.+.|++++++..
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 443333347899998 578999999999999999777643
No 456
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.32 E-value=33 Score=34.67 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
-+++||.|+ |.++..+++.+.+.|++++++..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 478999985 78999999999999999877753
No 457
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=63.32 E-value=10 Score=41.17 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC-cEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGI-RVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~-~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
..+||||+|.|.++..++..+.+.|+ ++++++.+.-..+ .+--+.+.-..+.. ....-.+...+.+++.+.+.-+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~s---NL~RQ~l~~~~dig-~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWS---NLQRQQLYTESDVK-NNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHH---HcCccccccHHHhc-CCCcHHHHHHHHHHHHCCCcEE
Confidence 35689999999999999999999999 5555543321111 01111111000000 0001123344455555554322
Q ss_pred eCC-CCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCC
Q psy15251 86 PGY-GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP 138 (720)
Q Consensus 86 pg~-g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~ 138 (720)
-.+ ..+.+ ..+...+....+.+.+.+... .+....+++.+.|+|..-
T Consensus 99 ~~~~~~~~~-~~~~~~~~~~DlVid~~Dn~~-----~r~~ln~~~~~~~iP~i~ 146 (339)
T PRK07688 99 EAIVQDVTA-EELEELVTGVDLIIDATDNFE-----TRFIVNDAAQKYGIPWIY 146 (339)
T ss_pred EEEeccCCH-HHHHHHHcCCCEEEEcCCCHH-----HHHHHHHHHHHhCCCEEE
Confidence 222 22221 223444555666655433222 244566778888988654
No 458
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=63.32 E-value=46 Score=37.59 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHH---HcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCE
Q psy15251 7 VLDSILIANRGEIACRIMRTAK---KMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQA 83 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~---~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~da 83 (720)
..+++||+|.|+.+..+++.++ ..|++++.+.++...... ....+ +. -+.+ +.+.+.+++.++|.
T Consensus 124 ~~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~-~~i~g--~p--------Vlg~-~~l~~~i~~~~id~ 191 (456)
T TIGR03022 124 WGRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASG-RLLTG--LP--------VVGA-DDALRLYARTRYAY 191 (456)
T ss_pred CCceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCccccc-cccCC--Cc--------ccCh-hHHHHHHHhCCCCE
Confidence 3578999999999999999987 468998888654321111 11111 10 1123 66788899999997
Q ss_pred EEeCCCCCcc--cHHHHHHHHHCCC
Q psy15251 84 IHPGYGFLSE--NAEFANAVEGNRL 106 (720)
Q Consensus 84 I~pg~g~lsE--~~~~a~~~~~~gl 106 (720)
|+...+...+ ...+...|++.++
T Consensus 192 ViIAip~~~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 192 VIVAMPGTQAEDMARLVRKLGALHF 216 (456)
T ss_pred EEEecCCccHHHHHHHHHHHHhCCC
Confidence 7654442211 1233444555555
No 459
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=63.29 E-value=33 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.1
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 9 DSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 9 ~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
+++||.|. |.++..+++.+.+.|++++++...
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 58999984 789999999999999998777543
No 460
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=63.19 E-value=27 Score=39.81 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=59.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCccc---c-cccEEEEeCCCCCcccccCHHHHHHHHHHcCCC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHV---K-MADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQ 82 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~---~-~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~d 82 (720)
.-||+.|.+.+.....+++.++++|++++.+.+......... . +.+..+.+ +..+...+.+.+++.++|
T Consensus 323 ~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~-------~d~~~~e~~~~i~~~~pD 395 (475)
T PRK14478 323 EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMI-------DDANPRELYKMLKEAKAD 395 (475)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEE-------eCCCHHHHHHHHhhcCCC
Confidence 357899988888899999999999999998876543221100 1 12222322 224567788888999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 83 AIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 83 aI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
.++.+.. -.....+.|+|++
T Consensus 396 liig~s~-------~~~~a~k~giP~~ 415 (475)
T PRK14478 396 IMLSGGR-------SQFIALKAGMPWL 415 (475)
T ss_pred EEEecCc-------hhhhhhhcCCCEE
Confidence 9885421 1345667899987
No 461
>PRK07063 short chain dehydrogenase; Provisional
Probab=63.06 E-value=20 Score=36.80 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
..|++||.|+ +.++..+++.+.+.|+++++++.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999985 689999999999999998887643
No 462
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=62.98 E-value=1.1e+02 Score=31.82 Aligned_cols=84 Identities=7% Similarity=0.058 Sum_probs=50.1
Q ss_pred EEEEEcC-cHHHHHHHHHHHHc-CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 10 SILIANR-GEIACRIMRTAKKM-GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~-G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
||.|+|. |.++..+++.+.+. +++++++........... +. + ....|.+.+.+++ ++|+|+-.
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---~~-~------~i~~~~dl~~ll~-----~~DvVid~ 67 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---GA-L------GVAITDDLEAVLA-----DADVLIDF 67 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---CC-C------CccccCCHHHhcc-----CCCEEEEC
Confidence 8999997 99999999999874 788888753322211111 10 1 1123455555442 58887732
Q ss_pred CCCCcccHHHHHHHHHCCCeEe
Q psy15251 88 YGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
.-. +-....+..+.+.|++++
T Consensus 68 t~p-~~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 68 TTP-EATLENLEFALEHGKPLV 88 (257)
T ss_pred CCH-HHHHHHHHHHHHcCCCEE
Confidence 211 112456777888888764
No 463
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.98 E-value=24 Score=35.64 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc-cccc--cEEEEeCCCCCcccccCHHHHHHHHHHc----
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALH-VKMA--DEAYRLEGKSSLDTYLNQAKILDIAVRS---- 79 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~-~~~a--D~~~~i~~~~~~~~~~~~~~i~~~a~~~---- 79 (720)
.+++||.|+ |.++..+++.+.+.|++++++..+++..... ..+. .....+. -+..+.+.+.+++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVA-----ADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEE-----CCCCCHHHHHHHHHHHHHHh
Confidence 368999985 7899999999999999988886544321110 1111 1111111 2456666666665544
Q ss_pred -CCCEEEeCCCC
Q psy15251 80 -QCQAIHPGYGF 90 (720)
Q Consensus 80 -~~daI~pg~g~ 90 (720)
++|+|+-..+.
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 58888866553
No 464
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=62.90 E-value=44 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=24.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIRVVSV 37 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~~v~v 37 (720)
||||+|.|.++..+++.+-+.|+.-+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~i 28 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITL 28 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 5899999999999999999999964444
No 465
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.81 E-value=21 Score=36.78 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=28.2
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.+++||.|+ |.++..+++.+.+.|+++++++.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999985 579999999999999998888654
No 466
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=62.69 E-value=19 Score=32.03 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=54.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHc--CCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeC
Q psy15251 10 SILIANRGEIACRIMRTAKKM--GIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPG 87 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~--G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg 87 (720)
|+.|+|.|.++...++.+.+. +.+++++++........ .+. .+ ....|.+.+ ++....++|+|+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~--~~~-~~------~~~~~~~~~---~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEA--FAE-KY------GIPVYTDLE---ELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHH--HHH-HT------TSEEESSHH---HHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHH--HHH-Hh------cccchhHHH---HHHHhhcCCEEEEe
Confidence 789999999999999999887 66767665332111111 110 00 001345544 45555688988755
Q ss_pred CCCCcccHHHHHHHHHCCCeEeC
Q psy15251 88 YGFLSENAEFANAVEGNRLIFVG 110 (720)
Q Consensus 88 ~g~lsE~~~~a~~~~~~gl~~~G 110 (720)
... ......+..+.+.|++++.
T Consensus 70 tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 70 TPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp SSG-GGHHHHHHHHHHTTSEEEE
T ss_pred cCC-cchHHHHHHHHHcCCEEEE
Confidence 432 2356778888888887664
No 467
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.55 E-value=31 Score=35.50 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=31.5
Q ss_pred CCCccCC--CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 1 MTIASCV--LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 1 m~~~~~~--~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|+|.... .|++||.|+ +.++..+++.+.+.|++++++..+
T Consensus 1 ~~~~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 1 MSENLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred CCccccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 5665543 378999985 678999999999999998887543
No 468
>PRK05875 short chain dehydrogenase; Provisional
Probab=62.51 E-value=21 Score=36.96 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=28.6
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
.|++||.|. |.++..+++.+.+.|+++++++.+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 479999995 789999999999999998887643
No 469
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.50 E-value=1.8e+02 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCc
Q psy15251 10 SILIANRGEIACRIMRTAKKMGIR 33 (720)
Q Consensus 10 ~iLI~~~G~~a~~iira~~~~G~~ 33 (720)
||+|+..|..+.|++..+...|+.
T Consensus 3 ki~vlt~g~yG~R~~~nl~~~~f~ 26 (224)
T COG1810 3 KILVLTDGEYGKRAVNNLACKGFK 26 (224)
T ss_pred EEEEEeeccchHHHHHhHhhhccc
Confidence 899999999999999999877743
No 470
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=62.34 E-value=9.1 Score=32.68 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=20.5
Q ss_pred ceeeEEecCCCCeeeCCCeEEEEEe
Q psy15251 658 GMVDKVLVQPGQAVKTGDPIMVIIA 682 (720)
Q Consensus 658 g~v~~~~v~~G~~V~~g~~l~~~ea 682 (720)
|.-++|++++|+.|++||+|+.++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 6668899999999999999999984
No 471
>PRK05868 hypothetical protein; Validated
Probab=62.29 E-value=12 Score=41.22 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEee
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s 39 (720)
|++|+|+|+|..++.++..|++.|+++.++..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 56999999999999999999999999888743
No 472
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.26 E-value=42 Score=38.46 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=32.1
Q ss_pred CCCccCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 1 MTIASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|.|... .++|+|+|-|..+..+++.|+++|+++.+.+..
T Consensus 1 ~~~~~~-~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 1 MFGDLQ-GPMVLVLGLGESGLAMARWCARHGARLRVADTR 39 (498)
T ss_pred CccccC-CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCC
Confidence 555543 578999999999999999999999998776543
No 473
>PRK12742 oxidoreductase; Provisional
Probab=62.16 E-value=31 Score=34.54 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=45.3
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcc--cccccEEEEeCCCCCcccccCHHHHHHHHHHcC-CC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALH--VKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQ-CQ 82 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~--~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~-~d 82 (720)
+.|++||.|+ |.++..+++.+.+.|+++++++......... ...--..+. -+..+.+.+.++..+.+ +|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~-------~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQ-------TDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEe-------cCCCCHHHHHHHHHHhCCCc
Confidence 4579999985 7899999999999999987664321110000 000011222 13455666666666544 78
Q ss_pred EEEeCCC
Q psy15251 83 AIHPGYG 89 (720)
Q Consensus 83 aI~pg~g 89 (720)
.++-..|
T Consensus 78 ~li~~ag 84 (237)
T PRK12742 78 ILVVNAG 84 (237)
T ss_pred EEEECCC
Confidence 7775444
No 474
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=62.15 E-value=27 Score=36.94 Aligned_cols=60 Identities=13% Similarity=0.304 Sum_probs=43.7
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCC
Q psy15251 10 SILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY 88 (720)
Q Consensus 10 ~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~ 88 (720)
||||.|+ |-++..+++.+.+.| +++++.... . .+ ..+..|.+.+.++.+..++|+|+-.-
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--~---------~~-------~~Dl~d~~~~~~~~~~~~~D~Vih~A 62 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHS--T---------DY-------CGDFSNPEGVAETVRKIRPDVIVNAA 62 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEEEecccc--c---------cc-------cCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 7999996 999999999999999 776663211 0 01 12557788888888888899887443
No 475
>PRK06436 glycerate dehydrogenase; Provisional
Probab=61.96 E-value=37 Score=36.23 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=28.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVY 38 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v~ 38 (720)
-|+|.|+|-|.++..+++.++.+|+++++++
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 5899999999999999999999999987774
No 476
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.95 E-value=36 Score=34.59 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
|.|++||.|+ |.++..+++.+.+.|+++++++.
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 3468999984 78999999999999999888864
No 477
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=61.89 E-value=47 Score=37.47 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=45.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---cCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKK---MGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAI 84 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~---~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI 84 (720)
.+++||+|.|+.+..+.+..++ .|++++.+.++.+... .... ..-+.+.+.+.++++++++|.|
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~i~g----------vpVlG~~~dl~~~v~~~~Id~V 190 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---YVPS----------EHVIENGDGLVEYVLRHRIDEI 190 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---ccCC----------CcccCCHHHHHHHHHhCCCCEE
Confidence 4689999999999988443332 5899988864332222 1111 1123466788999999999988
Q ss_pred EeCC
Q psy15251 85 HPGY 88 (720)
Q Consensus 85 ~pg~ 88 (720)
+...
T Consensus 191 iIAl 194 (442)
T TIGR03013 191 VIAL 194 (442)
T ss_pred EEEC
Confidence 7544
No 478
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.84 E-value=23 Score=40.56 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDID 42 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d 42 (720)
+-.|++|+|.|.+++..+++++.+|-++++++..+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467999999999999999999999998777755443
No 479
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=61.83 E-value=97 Score=33.49 Aligned_cols=141 Identities=19% Similarity=0.259 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccE-EEEeCCCCCcccccCHHHHHHHHHHcCCCEEEeCCCCCcccHH
Q psy15251 18 EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADE-AYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAE 96 (720)
Q Consensus 18 ~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~-~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~pg~g~lsE~~~ 96 (720)
+.|.++|+++++.|...|=+.+.. ........... .|.... .+. -..+.+..++... ...+...
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~-~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l--------~~e~~~~ 80 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFK-AEDLVSKNAPKAEYQKIN-----TGA-EESQLEMLKKLEL--------SEEDHRE 80 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCC-HHHhhCcccccccccccC-----CcC-CCcHHHHHHHhCC--------CHHHHHH
Confidence 459999999999998876554321 11111111111 111110 111 1233444444321 1112467
Q ss_pred HHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEE
Q psy15251 97 FANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI 176 (720)
Q Consensus 97 ~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~ 176 (720)
+.+.|++.|+.|+-.+.+. . .-+++.+.|+|.-+--...+++..- .+.+.+.|-|+++| .||
T Consensus 81 L~~~~~~~Gi~~~stpfd~-------~-svd~l~~~~v~~~KIaS~~~~n~pL-L~~~A~~gkPvilS-------tGm-- 142 (329)
T TIGR03569 81 LKEYCESKGIEFLSTPFDL-------E-SADFLEDLGVPRFKIPSGEITNAPL-LKKIARFGKPVILS-------TGM-- 142 (329)
T ss_pred HHHHHHHhCCcEEEEeCCH-------H-HHHHHHhcCCCEEEECcccccCHHH-HHHHHhcCCcEEEE-------CCC--
Confidence 8899999999998543222 1 2256677888876644444666654 44556779999997 455
Q ss_pred eCCHHHHHHHHHHHHH
Q psy15251 177 VRDSANFLAQLRSAQR 192 (720)
Q Consensus 177 v~~~~el~~~~~~~~~ 192 (720)
.+.+|+..+++.+.+
T Consensus 143 -atl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 143 -ATLEEIEAAVGVLRD 157 (329)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 389999999988864
No 480
>PRK00509 argininosuccinate synthase; Provisional
Probab=61.82 E-value=64 Score=35.79 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCEEEEE-cCcHHHHHHHHHHHHc-CCcEEEEeeC
Q psy15251 8 LDSILIA-NRGEIACRIMRTAKKM-GIRVVSVYSD 40 (720)
Q Consensus 8 ~~~iLI~-~~G~~a~~iira~~~~-G~~~v~v~s~ 40 (720)
++||+|+ .+|--..-++..+++. |+++++++-+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d 36 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTAD 36 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEe
Confidence 4566665 4555566666667665 9999988654
No 481
>KOG1198|consensus
Probab=61.77 E-value=72 Score=34.74 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcC-CcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHH--HcCCC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMG-IRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAV--RSQCQ 82 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G-~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~--~~~~d 82 (720)
.-++|||.|+ |..+..+++-|+..| ..++++.+...-...-.-=||+.+ +|.+.+-+..+.+ ..++|
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vv---------dy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVV---------DYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEee---------cCCCHHHHHHHHhhcCCCcc
Confidence 3457888875 578999999999999 566665554443333233366665 5666443333333 34799
Q ss_pred EEEeCCCC
Q psy15251 83 AIHPGYGF 90 (720)
Q Consensus 83 aI~pg~g~ 90 (720)
.|+=..|-
T Consensus 228 vVlD~vg~ 235 (347)
T KOG1198|consen 228 VVLDCVGG 235 (347)
T ss_pred EEEECCCC
Confidence 99866653
No 482
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=61.69 E-value=20 Score=36.64 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=28.9
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 478999985 8899999999999999998885443
No 483
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=61.63 E-value=77 Score=33.79 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=49.7
Q ss_pred EEEEEcCcHH-----HHHHHHHHHHcCCcEEEEeeCCCCCCcc-cccccEEEEeCCCCCccc------------ccCHHH
Q psy15251 10 SILIANRGEI-----ACRIMRTAKKMGIRVVSVYSDIDADALH-VKMADEAYRLEGKSSLDT------------YLNQAK 71 (720)
Q Consensus 10 ~iLI~~~G~~-----a~~iira~~~~G~~~v~v~s~~d~~~~~-~~~aD~~~~i~~~~~~~~------------~~~~~~ 71 (720)
||+|+.+|.. +..+++.+++.|+++.++..+....... ...--..+.++....... ......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQ 81 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHH
Confidence 6777766543 2478999999999998885422111110 111112223321110000 112335
Q ss_pred HHHHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 72 ILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 72 i~~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
+.++.++.++|.||...++.+ .....+....+++++
T Consensus 82 l~~~i~~~~pDvVi~~~~~~~--~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGGYVS--GPAGLAAKLLGIPLF 117 (348)
T ss_pred HHHHHHhcCCCEEEEcCCccc--HHHHHHHHHcCCCEE
Confidence 667788999999987544321 122223344566554
No 484
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=61.59 E-value=57 Score=34.88 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=50.8
Q ss_pred EEEEEcCcHH-----HHHHHHHHHHcCCcEEEEeeCCCCCCcccccc-cEEEEeCCCCC--ccc----------ccCHHH
Q psy15251 10 SILIANRGEI-----ACRIMRTAKKMGIRVVSVYSDIDADALHVKMA-DEAYRLEGKSS--LDT----------YLNQAK 71 (720)
Q Consensus 10 ~iLI~~~G~~-----a~~iira~~~~G~~~v~v~s~~d~~~~~~~~a-D~~~~i~~~~~--~~~----------~~~~~~ 71 (720)
+|+|.++|.. +..+++.+.+.|++++++.............- -+.+.++.... ... ......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHH
Confidence 4777765533 55788999999999988865432111111110 12233322110 000 111234
Q ss_pred HHHHHHHcCCCEEEeCCCCCcccHHHHHHHHHCCCeEe
Q psy15251 72 ILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFV 109 (720)
Q Consensus 72 i~~~a~~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~ 109 (720)
+.+++++.++|.||-...+.+ .....++...+++++
T Consensus 81 ~~~~i~~~~pDvI~~~~~~~~--~~~~~~a~~~~~p~v 116 (350)
T cd03785 81 ARKILKKFKPDVVVGFGGYVS--GPVGLAAKLLGIPLV 116 (350)
T ss_pred HHHHHHhcCCCEEEECCCCcc--hHHHHHHHHhCCCEE
Confidence 667788999999985443322 222334455566654
No 485
>PRK07074 short chain dehydrogenase; Provisional
Probab=61.48 E-value=29 Score=35.41 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=28.7
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|.|++||.|+ |.++..+++.+.+.|++++++..+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDID 35 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999986 789999999999999998887543
No 486
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.32 E-value=1.2e+02 Score=30.88 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=66.2
Q ss_pred cCcHHHHHHHHHHHHcCCcEEEEeeCCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHH---HcCCCEEEeCCCCC
Q psy15251 15 NRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAV---RSQCQAIHPGYGFL 91 (720)
Q Consensus 15 ~~G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~---~~~~daI~pg~g~l 91 (720)
...+.+..+++++.+.|++++=+.-+. + ...+.|.++.+ +...+ ++.|.|-.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~t--p----------------------~a~~~i~~l~~~~~~~~p~-~~vGaGTV 78 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRG--D----------------------FAHEVFAELVKYAAKELPG-MILGVGSI 78 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC--C----------------------cHHHHHHHHHHHHHhhCCC-eEEeeEeC
Confidence 455779999999999999987763210 0 11222333322 22234 44566533
Q ss_pred cccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEe
Q psy15251 92 SENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIK 164 (720)
Q Consensus 92 sE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvK 164 (720)
. +.+-++...++|..|+-.+. -|+ ..-+.+.++|+|..|+. .++.|+..+. +.|+.+ ||
T Consensus 79 l-~~e~a~~a~~aGA~FiVsP~------~~~-~v~~~~~~~~i~~iPG~----~TpsEi~~A~-~~Ga~~-vK 137 (222)
T PRK07114 79 V-DAATAALYIQLGANFIVTPL------FNP-DIAKVCNRRKVPYSPGC----GSLSEIGYAE-ELGCEI-VK 137 (222)
T ss_pred c-CHHHHHHHHHcCCCEEECCC------CCH-HHHHHHHHcCCCEeCCC----CCHHHHHHHH-HCCCCE-EE
Confidence 2 36667778888888864331 122 22346678899999984 4788887654 567654 44
No 487
>PRK08643 acetoin reductase; Validated
Probab=61.31 E-value=23 Score=36.09 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 7 VLDSILIAN-RGEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 7 ~~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|.|++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 357889988 4789999999999999998888644
No 488
>PRK06841 short chain dehydrogenase; Provisional
Probab=61.04 E-value=30 Score=35.22 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999984 8899999999999999988876543
No 489
>PRK05717 oxidoreductase; Validated
Probab=60.86 E-value=24 Score=36.08 Aligned_cols=40 Identities=20% Similarity=0.032 Sum_probs=31.3
Q ss_pred CCCccCC--CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeC
Q psy15251 1 MTIASCV--LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSD 40 (720)
Q Consensus 1 m~~~~~~--~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~ 40 (720)
|+.+..+ .|++||.|+ |.++..+++.+.+.|.++++++..
T Consensus 1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 4444433 478999985 789999999999999998888543
No 490
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=60.80 E-value=10 Score=40.87 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=33.6
Q ss_pred HHCCCCCCCcccCCCCCHHHHHHHHHHhCCcEEEeecCCCCCcceEEeCCHH-HHHHHHHHHHH
Q psy15251 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA-NFLAQLRSAQR 192 (720)
Q Consensus 130 ~~~Gvp~p~~~~~~~~s~~e~~~~~~~ig~PvvvKp~~g~Gg~Gv~~v~~~~-el~~~~~~~~~ 192 (720)
++.-+|.+|++. +-+.++.....+.+. -+|+||+.|.||+|+.+-.+.. |..+.++++..
T Consensus 262 eellL~~VpT~~--cg~~~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~ 322 (330)
T PF04174_consen 262 EELLLPNVPTWW--CGDPEDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILA 322 (330)
T ss_dssp S--SSEE---EE--TTSHHHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHH
T ss_pred CCcccCCCCcEe--CCCHHHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHh
Confidence 445577788887 888888888887775 7999999999999998854332 66666666654
No 491
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=60.78 E-value=12 Score=42.91 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCCccCCCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEee
Q psy15251 1 MTIASCVLDSILIANRGEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 1 m~~~~~~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s 39 (720)
|||... -.|+|+|+|.+++.+++.|.+.|++|.++..
T Consensus 1 ~~~~~~--~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 1 MTMMET--YDLLVIGGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred CCCCCc--CCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 777543 4799999999999999999999999999854
No 492
>PRK12743 oxidoreductase; Provisional
Probab=60.56 E-value=31 Score=35.26 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=28.2
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEee
Q psy15251 7 VLDSILIANR-GEIACRIMRTAKKMGIRVVSVYS 39 (720)
Q Consensus 7 ~~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s 39 (720)
|+|++||.|+ +.++..+++.+.+.|+++++++.
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4679999985 67899999999999999887753
No 493
>PLN02775 Probable dihydrodipicolinate reductase
Probab=60.53 E-value=2.1e+02 Score=30.23 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=43.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEee-CCCCCCcccccccEEEEeCCCCCcccccCHHHHHHHHHHcCCCEEE
Q psy15251 8 LDSILIAN-RGEIACRIMRTAKKMGIRVVSVYS-DIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85 (720)
Q Consensus 8 ~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s-~~d~~~~~~~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~daI~ 85 (720)
.-+|+|.| .|..+..+++++.+.+++.|.... .++.......+.+.-+.+. ...|.+.++...+...+|.|+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~------~~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLV------GPSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeee------cCccHHHHHHHhhccCCCEEE
Confidence 34899998 588899999998889999887532 1211111112232222221 125677777666666788443
No 494
>PRK08219 short chain dehydrogenase; Provisional
Probab=60.51 E-value=20 Score=35.65 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=45.4
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCcEEEEeeCCCCCCccc-ccccEEEEeCCCCCcccccCHHHHHHHHHHc-CCCEE
Q psy15251 8 LDSILIANR-GEIACRIMRTAKKMGIRVVSVYSDIDADALHV-KMADEAYRLEGKSSLDTYLNQAKILDIAVRS-QCQAI 84 (720)
Q Consensus 8 ~~~iLI~~~-G~~a~~iira~~~~G~~~v~v~s~~d~~~~~~-~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~-~~daI 84 (720)
++++||.|+ |.++..+++.+.+. ++++++..+........ ...+..+. .-+..|.+.+.++.... ++|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~------~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPF------PVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEE------ecCCCCHHHHHHHHHhcCCCCEE
Confidence 568999985 78899999999888 99888854322110000 11111111 12555667777766654 58887
Q ss_pred EeCCC
Q psy15251 85 HPGYG 89 (720)
Q Consensus 85 ~pg~g 89 (720)
+-.-|
T Consensus 76 i~~ag 80 (227)
T PRK08219 76 VHNAG 80 (227)
T ss_pred EECCC
Confidence 75444
No 495
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=60.49 E-value=48 Score=34.95 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=30.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCcEEEEeeCCC
Q psy15251 7 VLDSILIANRGEIACRIMRTAKKMGIRVVSVYSDID 42 (720)
Q Consensus 7 ~~~~iLI~~~G~~a~~iira~~~~G~~~v~v~s~~d 42 (720)
++++|+|+|.|.++..+++.+++.|+.+.++..+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 356999999999999999999999999877755544
No 496
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=60.40 E-value=67 Score=32.87 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=28.9
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCcEEEEeeCC
Q psy15251 8 LDSILIAN-RGEIACRIMRTAKKMGIRVVSVYSDI 41 (720)
Q Consensus 8 ~~~iLI~~-~G~~a~~iira~~~~G~~~v~v~s~~ 41 (720)
.|++||.| .|.++..+++.+.+.|+++++++.+.
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899998 47899999999999999998886544
No 497
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=60.38 E-value=36 Score=39.25 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HcCCcEEEEeeCCCCCCccc-----ccccEEEEeCCCCCcccccCHHHHHHHHHHcCC
Q psy15251 8 LDSILIANRGEIACRIMRTAK-KMGIRVVSVYSDIDADALHV-----KMADEAYRLEGKSSLDTYLNQAKILDIAVRSQC 81 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~-~~G~~~v~v~s~~d~~~~~~-----~~aD~~~~i~~~~~~~~~~~~~~i~~~a~~~~~ 81 (720)
-||+.|.+....+..+.+.+. ++|++++.+.+......... .++|+.+.. .|...+.+.+++.++
T Consensus 295 Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~---------dD~~ei~~~i~~~~p 365 (511)
T TIGR01278 295 GKRAFVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLIT---------DDFQEVADAIAALEP 365 (511)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEEe---------CCHHHHHHHHHhcCC
Confidence 579999999999999999997 99999976633211001000 123333321 245567777777777
Q ss_pred CEEE
Q psy15251 82 QAIH 85 (720)
Q Consensus 82 daI~ 85 (720)
|.|+
T Consensus 366 dlii 369 (511)
T TIGR01278 366 ELVL 369 (511)
T ss_pred CEEE
Confidence 7776
No 498
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=60.20 E-value=1e+02 Score=31.68 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=39.4
Q ss_pred cCHHHHHHHHH---HcCCCEEEeCCCCCcccHHHHHHHHHCCCeEeCCCHHHHHHhcCHHHHHHHHHHCCCCCC
Q psy15251 67 LNQAKILDIAV---RSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVI 137 (720)
Q Consensus 67 ~~~~~i~~~a~---~~~~daI~pg~g~lsE~~~~a~~~~~~gl~~~Gp~~~~i~~~~DK~~~r~~l~~~Gvp~p 137 (720)
.+.+.+.+.++ ..++|+|+-.+.-+.-...+..+-++.|+|++-.+. ..+...|+.+|++..
T Consensus 165 i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNq---------at~W~~Lr~~G~~~~ 229 (239)
T TIGR02990 165 ISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQ---------ATAWRCLRLCGDPDM 229 (239)
T ss_pred cCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHH---------HHHHHHHHHcCCCCC
Confidence 56677777777 456899886655443223344555668999883222 234567888888764
No 499
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=60.05 E-value=70 Score=35.62 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=27.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q psy15251 8 LDSILIANRGEIACRIMRTAKKMGIRVVSV 37 (720)
Q Consensus 8 ~~~iLI~~~G~~a~~iira~~~~G~~~v~v 37 (720)
-+++||+|.|+.+.-+++.+.+.|+.-+.+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~I 207 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITI 207 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999988777
No 500
>PRK12784 hypothetical protein; Provisional
Probab=60.03 E-value=11 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.3
Q ss_pred eeecCCcceeeEEecCCCCeeeCCCeEEEEEee
Q psy15251 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM 683 (720)
Q Consensus 651 ~v~ap~~g~v~~~~v~~G~~V~~g~~l~~~eam 683 (720)
.|.--++|.|..+.|++||.|..+-.|+.+|-.
T Consensus 45 ~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 45 KVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred EEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 456668999999999999999999999999854
Done!