RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15251
(720 letters)
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 787 bits (2034), Expect = 0.0
Identities = 295/712 (41%), Positives = 420/712 (58%), Gaps = 68/712 (9%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
ILIANRGEIACR++RTA+ +GIR V+VYSD DADALHV+MADEA + + ++YL
Sbjct: 2 FSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
+ KI+D A R+ QAIHPGYGFLSENA+FA AVE L+F+GPS+ AIR MG K +K+
Sbjct: 62 DIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKK 121
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+ +A VP +PGYHG Q+ L+ AE IGYP++IKA GGGGKGMR+V F L
Sbjct: 122 LAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEAL 181
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
SA+RE++++F D +V +EKY+ PRHIE+Q+ D++GN V+L ERDCS+QRRHQK+IEE
Sbjct: 182 ESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIEE 241
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
APAP ++ E R +G V A+AV Y AGTVEFI+D + G FYF+EMNTRLQVEHPV+
Sbjct: 242 APAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVD-ADGNFYFLEMNTRLQVEHPVT 300
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
E+ITG+DLV+WQ+ VASG++LP Q+D+ L GH+ E RIYAE+P GFLP G LT RP
Sbjct: 301 ELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRP 360
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P +R+++GV EGDE+S YDPMI+KL+V +R AL+++++AL+++++ G+ TNI
Sbjct: 361 PAGP-GVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGIATNI 419
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLKQIQDAKLEKA 487
FL L ++ F GD+ TGFI + ++L + + AAL Q A +A
Sbjct: 420 PFLRALMADPRFRGGDLDTGFIAREIEDLFAPAPASADALAAAALL-----AQPALERRA 474
Query: 488 KSNGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAKLEKAKSNRNVFSLLTGFRMNHSHV 547
+S+ + L+G+ +
Sbjct: 475 ESD------------PWAS------------------------------LSGWVVTGDAA 492
Query: 548 KTVQIQHLNKEYNVQVTLSAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGR 607
+ + + V++ R + D EL + +S G K
Sbjct: 493 ELRVLIDGEERVEVRLPAREGRERFYVDSDWDPEL-----ASAALS---------GRKRA 538
Query: 608 IRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQP 667
+R + G +++F GS + K L A + ++++PMPG V V V+
Sbjct: 539 VRVARA--GGGLTLFWGGGSPRIAELDK---LGGAKVAAASSGELLAPMPGTVVSVAVKE 593
Query: 668 GQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719
GQ V GD ++V+ AMKME + + G++ ++ A G + LV+
Sbjct: 594 GQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 622 bits (1607), Expect = 0.0
Identities = 214/445 (48%), Positives = 305/445 (68%), Gaps = 2/445 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
D ILIANRGEIA RI+R K++GI+ V+V+S D DALHV++ADEA + S +YL
Sbjct: 2 FDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N I+ A + AIHPGYGFLSENA+FA E + F+GPS+E IR MG K T+K
Sbjct: 62 NIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKA 121
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
M KA VPV+PG G +EE + A+ IGYP++IKA GGGG+GMR+VR A
Sbjct: 122 TMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAF 181
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
A+ E+++AF + V +EKY+++PRHIE+Q++ D +GN ++L ERDCS+QRRHQK++EE
Sbjct: 182 SMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEE 241
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
AP+P I+ E R ++G V+ A+A+ Y AGT+EF+ + +GEFYF+EMNTR+QVEHPV+
Sbjct: 242 APSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYE-KNGEFYFIEMNTRIQVEHPVT 300
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EMITGVDLV+ Q+ +A+G+ L +KQED+ RGH+ E RI AE+P + F+P G +T P
Sbjct: 301 EMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHP 360
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P +R+++ V G + +YD MI KL+V E R A+ +MK+ALS++ I G+ T I
Sbjct: 361 PG-GPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTI 419
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQH 452
+ L ++ +F GD + ++++
Sbjct: 420 PLHLRLLNDPNFQAGDYNIHYLEKK 444
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 574 bits (1481), Expect = 0.0
Identities = 219/447 (48%), Positives = 310/447 (69%), Gaps = 3/447 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
ILIANRGEIA R+MR +++GI+ V+VYS+ D +AL VK ADEAY + +YL
Sbjct: 2 FKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N +I+D+A ++ AIHPGYGFL+EN EFA A E ++F+GPSS+ I MG K +K+
Sbjct: 62 NIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKK 121
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+M KA VPV+PG ++ E E AE IGYP++IKA GGGG GMR+V +
Sbjct: 122 LMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAI 181
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
S Q +QSAF DS V +EKY++ PRHIE+QI+ D++GN ++L +R+CS+QRRHQK+IEE
Sbjct: 182 ESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIEE 241
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
AP+P ++ E R R+G V+ A+A+ Y NAGTVEF+ S+G FYF+EMNTRLQVEHP++
Sbjct: 242 APSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLY--SNGNFYFLEMNTRLQVEHPIT 299
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EM+TG+D+V+ Q+ +A+G+EL KQED+ +RGH+ E RI AE+P F P G + R
Sbjct: 300 EMVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRS 359
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P +R+++GV G E+ +YD MISKL+VW R A+ +M++AL +Y I G+ TNI
Sbjct: 360 P-GGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVGVKTNI 418
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQHKD 454
F + N++F++G++HT FI++
Sbjct: 419 PFHKAVMENENFVRGNLHTHFIEEETT 445
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 556 bits (1435), Expect = 0.0
Identities = 223/445 (50%), Positives = 308/445 (69%), Gaps = 2/445 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
ILIANRGEIA RI+R +++GI V+VYS+ DADALHV +ADEA + S D+YL
Sbjct: 2 FKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N I+ A + AIHPGYGFLSENA FA A L F+GPS+EAIR MG K T++
Sbjct: 62 NIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARR 121
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+M KA VPV+PG G + E + AE IGYP+++KA GGGG+GMR+VR+ A
Sbjct: 122 LMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAF 181
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
+A+ E+++AF + +V LEK+I+ PRHIEVQ++GD +GN ++L ERDCS+QRRHQK+IEE
Sbjct: 182 EAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEE 241
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
AP+P ++ E R ++G V+ A+ + Y AGTVEF+ D S+GEFYF+EMNTRLQVEHPV+
Sbjct: 242 APSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYD-SNGEFYFIEMNTRLQVEHPVT 300
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EM+TG+DLV+ Q+ +A+G+ L LKQED++ RGH+ E RI AE+P FLP G +T P
Sbjct: 301 EMVTGIDLVKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAP 360
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P +R+++GV +G V +YD MI K++V R A+ +M++AL + I G+ TNI
Sbjct: 361 PGGPG-VRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIKTNI 419
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQH 452
L + + F+ GD+ T F++ H
Sbjct: 420 PLLQEILRDPDFLAGDLDTHFLETH 444
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 544 bits (1403), Expect = 0.0
Identities = 214/445 (48%), Positives = 308/445 (69%), Gaps = 2/445 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
LD ILIANRGEIA RI+R K++GI+ V+V+S D DALHV +ADEA + S +YL
Sbjct: 2 LDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N I+ A + AIHPGYGFLSENA FA E + F+GPS+E+IR MG K ++ E
Sbjct: 62 NIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIE 121
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
M KA VP +PG G ++EE + A+RIGYP++IKA GGGG+GMR+VR+ + +
Sbjct: 122 TMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSI 181
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
+ E+++AF + V +EKYI++PRH+E+Q++ D+YGN +YL ERDCS+QRRHQK++EE
Sbjct: 182 SMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEE 241
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
AP+P ++ E R ++G V+ A ++ Y AGTVEF++D +GEFYFMEMNTR+QVEHPV+
Sbjct: 242 APSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLD-KNGEFYFMEMNTRIQVEHPVT 300
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EMITGVDL++ Q+ +A+G+ L LKQED+ +RGH+ E RI AE+P + FLP G +T P
Sbjct: 301 EMITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLP 360
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P +R ++ V G V +YD MI KL+ + + R +A+ +MK+ALS++ I G+ T I
Sbjct: 361 PG-GPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTTI 419
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQH 452
F + +++F G + ++++
Sbjct: 420 PFHQRILEDENFQHGGTNIHYLEKK 444
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 544 bits (1403), Expect = 0.0
Identities = 207/451 (45%), Positives = 299/451 (66%), Gaps = 3/451 (0%)
Query: 9 DSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLN 68
+LIANRGEIA RI+RT +K+GIR V++YS+ D DALHVKMADEAY + G ++YLN
Sbjct: 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLN 62
Query: 69 QAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEI 128
KI++IA ++ +AIHPGYG LSENA FA + ++F+GPS++ I MG K ++
Sbjct: 63 LEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRA 122
Query: 129 MIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLR 188
M A VPV+PG ++ E + A +IGYP+M+KA GGGG GM++V
Sbjct: 123 MQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFE 182
Query: 189 SAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA 248
S ++ + + F + ++ +EKYI+ PRHIE+Q++ D +GN VYL+ER+CSVQRRHQK+IEEA
Sbjct: 183 SNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIEEA 242
Query: 249 PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSE 308
P+P + E R +G VQ A+A+ Y NAGT+EF++D FYF+EMNTRLQVEHPV+E
Sbjct: 243 PSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFLEMNTRLQVEHPVTE 301
Query: 309 MITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPP 368
ITG+DLV+ QL +A+G++L Q+D++ GH+ E RIYAE+P + F P G +T L P
Sbjct: 302 EITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDP-KTFFPSPGKITDLTLP 360
Query: 369 EHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNIN 428
+ +R + V G V+ YDPMI+KL+ E R A++++ AL + ++ G+ TNI
Sbjct: 361 GG-EGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEGIKTNIP 419
Query: 429 FLINLCSNDHFIQGDIHTGFIDQHKDELLTR 459
L+ + + F G TGF+ + + T+
Sbjct: 420 LLLQVLEDPVFKAGGYTTGFLTKQLVKKSTK 450
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 543 bits (1400), Expect = 0.0
Identities = 223/441 (50%), Positives = 317/441 (71%), Gaps = 2/441 (0%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
ILIANRGEIA RI+R ++MGI V+VYS+ D DALHV++ADEA + SS D+YLN
Sbjct: 5 ILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQ 64
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
I+ V + QAIHPG+GFLSEN++FA + ++F+GP SE I MG KS ++EIMI
Sbjct: 65 NIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMI 124
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
KA VPV+PG GE +NEE +E A+ IGYP+M+KA GGGG+G+RIVR + +A
Sbjct: 125 KAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTA 184
Query: 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250
+ E+++AF D + +EK+I++P+HIE QI+GD YGN V+L ERDCS+QRR+QK++EEAP+
Sbjct: 185 KSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPS 244
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMI 310
P ++ E R ++G V+ A+AV Y NAGT+EF++D G FYFMEMNTR+QVEHP++EMI
Sbjct: 245 PVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLD-KDGNFYFMEMNTRIQVEHPITEMI 303
Query: 311 TGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEH 370
TGVDLV+ Q+ +A G++L +KQED+++ GHS E RI AE+P GF+P G + L P
Sbjct: 304 TGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGG 363
Query: 371 SDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFL 430
+R+++ V G + +YD MI KL+V+ ++R A+ KMK+AL ++ I G++TNI+F
Sbjct: 364 LG-VRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTNIDFQ 422
Query: 431 INLCSNDHFIQGDIHTGFIDQ 451
+ ++ FI+G T FI++
Sbjct: 423 FIILEDEEFIKGTYDTSFIEK 443
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 559 bits (1444), Expect = 0.0
Identities = 216/456 (47%), Positives = 303/456 (66%), Gaps = 11/456 (2%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-EGKSSLDTYLNQ 69
+L+ANRGEIA RI R A ++GIR V++YS+ D +LH ADEAY + EGK + YL+
Sbjct: 8 VLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDI 67
Query: 70 AKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM 129
+I+ +A ++ AIHPGYGFLSEN EFA A + F+GP++E +R +G K ++
Sbjct: 68 DEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAA 127
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
IKA VPVIPG G + E +E AE IGYP+M+KA GGGG+GMRIVR
Sbjct: 128 IKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFER 187
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
A+RE+++AF + +V LEKY+++PRHIEVQI+GD++GN V+LYERDCSVQRRHQK++E AP
Sbjct: 188 AKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAP 247
Query: 250 APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEM 309
APG+S E R R+ V++ARAV Y NAGTVEF++D G FYF+E+N R+QVEH V+E
Sbjct: 248 APGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNFYFIEVNPRIQVEHTVTEE 306
Query: 310 ITGVDLVQWQLMVASGQEL------PLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLT 363
+TG+D+VQ Q+++A G L QED++LRG++ + RI E+P F+P G +T
Sbjct: 307 VTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRIT 366
Query: 364 HLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422
R P +R++ G G E++ +YD ++ KL W A+ +M++AL +++I G
Sbjct: 367 AYRSPGGFG-VRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFRIRG 425
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLT 458
+ TNI FL N+ + F GD T FID+ EL
Sbjct: 426 VKTNIPFLENVLKHPDFRAGDYTTSFIDETP-ELFD 460
Score = 86.3 bits (215), Expect = 3e-17
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+P V +PMPG V VLV+ G VK GDP+ VI AMKME IT+ G ++ + AG
Sbjct: 1074 GNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD 1133
Query: 707 SIQKNQNLVKIVP 719
++ LV++ P
Sbjct: 1134 QVEAGDLLVELEP 1146
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as urea
[Central intermediary metabolism, Nitrogen metabolism].
Length = 1201
Score = 537 bits (1385), Expect = e-177
Identities = 210/475 (44%), Positives = 306/475 (64%), Gaps = 15/475 (3%)
Query: 9 DSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLN 68
D++LIANRGEIA RI+RT ++MGIR V+VYSD DA + HV ADEA L G + ++YL+
Sbjct: 2 DTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLD 61
Query: 69 QAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEI 128
KIL A ++ QAIHPGYGFLSENA FA A E ++FVGP+ E IR G+K T++E+
Sbjct: 62 IDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTAREL 121
Query: 129 MIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLR 188
A VP++PG G + + +E A+ IGYP+M+K+ GGGG GM+ +A
Sbjct: 122 AEAAGVPLLPG-TGLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFE 180
Query: 189 SAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA 248
+ +R +S F D+ V LE+++++ RH+EVQI GD G V L ERDCS+QRR+QK++EE
Sbjct: 181 TVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEET 240
Query: 249 PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSE 308
PAP + E R L + ++ AV Y +AGTVEFI D + EFYF+E+NTRLQVEHPV+E
Sbjct: 241 PAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTE 300
Query: 309 MITGVDLVQWQLMVASGQELPLKQ--EDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLR 366
M+TG+DLV+W + +A+G+ L RG + E R+YAENP + F P G LT ++
Sbjct: 301 MVTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQ 360
Query: 367 PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTN 426
P D +R++T V G EVS YDPM++K++V +R A+ K+ QAL++ ++ G++TN
Sbjct: 361 FP---DDVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETN 417
Query: 427 INFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLKQIQD 481
+++L ++ S++ F + T ++ T P E++ A + +QD
Sbjct: 418 LDYLRSILSSETFRSAQVSTRTLNSFVY-----TPPAIEVLSPGAQT----TVQD 463
Score = 61.2 bits (149), Expect = 1e-09
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 641 PEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEI 700
PE + V S G KVLV+ G V+ G P++++ AMKME +++ +G + +I
Sbjct: 1129 PEGAEQ-----VESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKI 1183
Query: 701 FYAAGQSIQKNQNLVKI 717
G + + +
Sbjct: 1184 LCQPGDMVDAGDIVAVL 1200
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 505 bits (1303), Expect = e-174
Identities = 205/444 (46%), Positives = 286/444 (64%), Gaps = 2/444 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+ +L+ANRGEIA RI+R A+++G+R V+ SD D D+L +MADEA + + +YL
Sbjct: 5 IRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYL 64
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N A IL A + AIHPGYGFLSENA FA AVE LIFVGP ++ IR MG K+ ++
Sbjct: 65 NPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARR 124
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+A VP +PG G + + +E A RIGYPLMIKA GGGG+G+R+ D+A A+L
Sbjct: 125 TARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAEL 184
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
AQRE+Q+AF D V LE++I RHIEVQI+GD V+L+ER+CS+QRR QKI+EE
Sbjct: 185 PLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKILEE 243
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
AP+P ++ R L ++ V++AR V Y AGT+E++ D + GEFYF+EMNTR+QVEHPV+
Sbjct: 244 APSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVT 303
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
E ITG+DLVQ L +A G+ L Q D+ LRG + E RI AE+P F P G + L
Sbjct: 304 EAITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVW 363
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P+ +R+++ + G V YD +++KL+V E+R AL + +AL + +I G+ T
Sbjct: 364 PQ-GPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTTA 422
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQ 451
L ++ G HT F++
Sbjct: 423 PLHRALLADADVRAGRFHTNFLEA 446
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
Length = 472
Score = 494 bits (1273), Expect = e-169
Identities = 211/463 (45%), Positives = 297/463 (64%), Gaps = 4/463 (0%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
ILIANRGEIA RI+R +MGIR V++YS+ D ALHVK ADEAY + G L YLN
Sbjct: 5 ILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSI-GADPLAGYLNPR 63
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
+++++AV + C A+HPGYGFLSENAE A + F+GPS+E IR MG K+ ++ MI
Sbjct: 64 RLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMI 123
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
KA VPV PG G + + + +AERIGYP+M+KA GGGG+G+R
Sbjct: 124 KAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRV 183
Query: 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250
E+ AF ++V LEK I +P+HIEVQI+ D +GN V+L+ERDCS+QRR+QK+IE AP+
Sbjct: 184 ISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPS 243
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMI 310
P ++ E R+ +G V+ A+AV Y NAGTVEF++D + GE YFMEMNTR+QVEH ++E I
Sbjct: 244 PQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLD-ADGEVYFMEMNTRVQVEHTITEEI 302
Query: 311 TGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEH 370
TG+D+V+ Q+ +ASG L KQED+Q RG + + RI AE+P FLP G +T P
Sbjct: 303 TGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAP-G 361
Query: 371 SDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFL 430
+R +T + G + +YD M +KL+VW AL++ ++AL ++ G+ T I +
Sbjct: 362 GPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTTIPYY 421
Query: 431 INLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALS 473
+ N F G +T F++ H EL ++ + L AA++
Sbjct: 422 QEILRNPEFRSGQFNTSFVESHP-ELTNYSIKRKPEELAAAIA 463
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 483 bits (1244), Expect = e-165
Identities = 201/446 (45%), Positives = 295/446 (66%), Gaps = 4/446 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+ ILIANRGEIA R +RT ++MG +++YS D DAL++K AD + G S ++YL
Sbjct: 4 IKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYL 63
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N I+ A + AI PGYGFLSEN F + + F+GPS E + M KS +KE
Sbjct: 64 NIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKE 123
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+M +A VPVIPG G ++ E + A+ IGYP+++KA GGGG+GMR+V D ++
Sbjct: 124 VMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLY 183
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
+A+ E+ SAF D + +EK+I +PRHIEVQI+GD++GN +++ ERDCS+QRRHQK+IEE
Sbjct: 184 LAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEE 243
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
+PA + + R RL T ++ A+A+ Y AGT EF++D S+ +FYFMEMNTRLQVEH VS
Sbjct: 244 SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLD-SNLDFYFMEMNTRLQVEHTVS 302
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EM++G+DL++W + +A G+ELP QE ++L+GH+ E RI AE+P + F P G +T
Sbjct: 303 EMVSGLDLIEWMIKIAEGEELP-SQESIKLKGHAIECRITAEDP-KKFYPSPGKITKWIA 360
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P + +R+++ G V +YD MI KL+VW E+R A+ KMK+AL ++++ G+ T I
Sbjct: 361 PGGRN-VRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTTI 419
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQHK 453
F + + N FI T ++++H
Sbjct: 420 PFHLEMMENADFINNKYDTKYLEEHF 445
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 494 bits (1274), Expect = e-161
Identities = 197/450 (43%), Positives = 290/450 (64%), Gaps = 10/450 (2%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-EGKSSLDTYLNQ 69
+L+ANRGEIA R+ R A ++GI+ V++YS+ D +LH ADE+Y + EGK ++ YL+
Sbjct: 10 VLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSI 69
Query: 70 AKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM 129
+I+ IA RS AIHPGYGFLSEN EFA A + F+GP E + +G K ++
Sbjct: 70 DEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAA 129
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
IKA VPVIPG G + E +E AE GYP+MIKA GGGG+GMR+VR A+
Sbjct: 130 IKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFER 189
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
A+ E+++AF + +V +EK +++P+HIEVQI+GD +GN V+L+ERDCSVQRRHQK++E AP
Sbjct: 190 AKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAP 249
Query: 250 APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEM 309
AP +S E R + V++AR + Y NAGTVEF++D G+FYF+E+N R+QVEH ++E
Sbjct: 250 APYLSPELRDEICDDAVKLARNIGYINAGTVEFLVD-EDGKFYFIEVNPRIQVEHTITEE 308
Query: 310 ITGVDLVQWQLMVASGQELP------LKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLT 363
ITG+D+V+ Q+ +A+G L +Q+D++ G++ + RI E+P GF+P G +T
Sbjct: 309 ITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRIT 368
Query: 364 HLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422
R +R++ G G ++ +YD ++ K+ W A+ KM +AL +++I G
Sbjct: 369 AYRSAG-GFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIRG 427
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFIDQH 452
+ TNI FL + ++ F G T FID
Sbjct: 428 VKTNIPFLEAVLNHPDFRSGRYTTSFIDTT 457
Score = 78.2 bits (193), Expect = 9e-15
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+P + +PMPG+V +V V+ G VK GD + VI AMKME I++ G ++E+ G
Sbjct: 1077 GNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD 1136
Query: 707 SIQKNQNLVKI 717
I LV +
Sbjct: 1137 QIDGGDLLVVV 1147
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 462 bits (1191), Expect = e-157
Identities = 212/479 (44%), Positives = 317/479 (66%), Gaps = 11/479 (2%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
ILIANRGEIA R++R + + I+ V++Y++ D + LHVK+ADEAYR+ G + YL+
Sbjct: 5 ILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRI-GTDPIKGYLDVK 63
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
+I++IA AIHPGYGFLSEN EFA AVE +IF+GP SE IR MG K+ ++ +M
Sbjct: 64 RIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMK 123
Query: 131 KAEVPVIPGYHG-EDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
K +P++PG ++ E + A +IGYP+++KA GGGG+G+R+V + S
Sbjct: 124 KNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFES 183
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
+RE+ + FN+ +V +EKY+ +PRHIE QI+GD YGN ++L ERDCS+QRRHQK+IE AP
Sbjct: 184 CKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAP 243
Query: 250 APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEM 309
P IS R +G T V A+AV Y NAGT+EF++D FYFMEMNTR+QVEH V+E
Sbjct: 244 CPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLD-DYNRFYFMEMNTRIQVEHGVTEE 302
Query: 310 ITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPE 369
ITG+DL+ Q+ +A+G+ L L+Q D++ RG + E RI AEN ++ F+P G +T P
Sbjct: 303 ITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPA- 361
Query: 370 HSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINF 429
++R+++ + + + +YD M++KL+V + LA+NK+++AL ++ I G+ T I F
Sbjct: 362 LGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTTIPF 421
Query: 430 LINLCSNDHFIQGDIHTGFIDQHKDELLTRTL-----PQTEIILQAALSLVLKQIQDAK 483
LI + F +G T +I+ H ELL +T + E+I AA++ LK+I++++
Sbjct: 422 LIAITKTREFRRGYFDTSYIETHMQELLEKTEDRHQENKEEVI--AAIAAALKKIRESR 478
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 445 bits (1145), Expect = e-142
Identities = 196/453 (43%), Positives = 291/453 (64%), Gaps = 12/453 (2%)
Query: 10 SILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAY---RLEGKSSLDTY 66
IL+ANRGEIA R+ R A ++GIR V++YS+ D +LH + ADE+Y ++ Y
Sbjct: 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAY 60
Query: 67 LNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSK 126
L+ +I+ +A + AIHPGYGFLSEN+EFA+A +IF+GP +E + +G K ++
Sbjct: 61 LSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAAR 120
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
+ IKA VPV+PG G + E +++ A IGYP++IKA GGGG+GMR+VR A+
Sbjct: 121 NLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADA 180
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
+ A+ E+++AF + +V +EK I+ PRHIEVQ++GD++GN V+L+ERDCSVQRRHQK++E
Sbjct: 181 FQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
APAP +S E R + V++A+AV Y NAGTVEF++D + G+FYF+E+N R+QVEH V
Sbjct: 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVD-NDGKFYFIEVNPRIQVEHTV 299
Query: 307 SEMITGVDLVQWQLMVASGQELPLK------QEDLQLRGHSFETRIYAENPYEGFLPGAG 360
+E ITG+D+VQ Q+ +A G LP QED++ G++ + R+ E+P F P G
Sbjct: 300 TEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTG 359
Query: 361 NLTHLRPPEHSDTIRIETG-VIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQ 419
+ R IR++ G G ++ +YD ++ K+ W A KM +AL +++
Sbjct: 360 RIEAYRSAG-GFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFR 418
Query: 420 IAGLDTNINFLINLCSNDHFIQGDIHTGFIDQH 452
I G+ TNI FL N+ + F+ G T FID
Sbjct: 419 IRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTT 451
Score = 72.9 bits (179), Expect = 3e-13
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 594 KYGYELVAEGEKGRIRSSVVCLDGSVSVFTKTGSYQ--FNLPGKSYSLEPEDSA------ 645
G E+ + EKG+ +++ +V G + F L G+ ++ D +
Sbjct: 1008 ADGEEIEVDIEKGK---TLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAA 1064
Query: 646 ------LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEE 699
+P+ V +PMPG++ +V V GQAV GDP++V+ AMKME I + G I+E
Sbjct: 1065 VRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKE 1124
Query: 700 IFYAAGQSIQKNQNLVKI 717
+ AG+ I L+ +
Sbjct: 1125 VLVKAGEQIDAKDLLLVL 1142
>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP
binding domain. Carbamoyl-phosphate synthase catalyzes
the ATP-dependent synthesis of carbamyl-phosphate from
glutamine or ammonia and bicarbonate. This important
enzyme initiates both the urea cycle and the
biosynthesis of arginine and/or pyrimidines. The
carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes
is a heterodimer of a small and large chain. The small
chain promotes the hydrolysis of glutamine to ammonia,
which is used by the large chain to synthesise carbamoyl
phosphate. See pfam00988. The small chain has a GATase
domain in the carboxyl terminus. See pfam00117. The ATP
binding domain (this one) has an ATP-grasp fold.
Length = 211
Score = 264 bits (678), Expect = 3e-84
Identities = 94/210 (44%), Positives = 129/210 (61%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K K M +A VP +PG G + EE + A+ IGYP++IKA GGGG GM I R+
Sbjct: 2 KVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEE 61
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
A E+ +AF + +VL+EK ++ P+HIE Q++ D +GN + + R+CS QRR
Sbjct: 62 ELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRT 121
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
QK IE AP+ ++ E R L V++AR + Y AGTVEF +DP SGE+YF+EMNTRLQ
Sbjct: 122 QKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRLQ 181
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELPLK 331
VEH ++E TG DL + +A G LP
Sbjct: 182 VEHALAEKATGYDLAKEAAKIALGYPLPEL 211
>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain,
N-terminal domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. This important enzyme initiates both the
urea cycle and the biosynthesis of arginine and/or
pyrimidines. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain. The small chain promotes the hydrolysis of
glutamine to ammonia, which is used by the large chain
to synthesise carbamoyl phosphate. See pfam00988. The
small chain has a GATase domain in the carboxyl
terminus. See pfam00117.
Length = 108
Score = 171 bits (437), Expect = 9e-51
Identities = 57/108 (52%), Positives = 76/108 (70%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+ +L+ANRGEIA RI+R +++GI V+V S+ D + HV++ADEAY L + ++YL
Sbjct: 1 IKKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYL 60
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
N +ILDIA + AIHPGYGFLSENAEFA A E + F+GPS EA
Sbjct: 61 NIERILDIAEKEGADAIHPGYGFLSENAEFAEACEEAGITFIGPSPEA 108
>gnl|CDD|214878 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain.
Biotin carboxylase is a component of the acetyl-CoA
carboxylase multi-component enzyme which catalyses the
first committed step in fatty acid synthesis in animals,
plants and bacteria. Most of the active site residues
reported in reference are in this C-terminal domain.
Length = 107
Score = 158 bits (403), Expect = 5e-46
Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 343 ETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDE 402
E RI AE+P GFLP G +T R P +R+++GV EG EV +YD MI+KL+VW E
Sbjct: 1 ECRINAEDPANGFLPSPGRITRYRFPGGPG-VRVDSGVYEGYEVPPYYDSMIAKLIVWGE 59
Query: 403 NRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFID 450
+R A+ ++++AL +++I G+ TNI FL L + F GD+ TGF++
Sbjct: 60 DREEAIARLRRALDEFRIRGVKTNIPFLRALLRHPDFRAGDVDTGFLE 107
>gnl|CDD|202395 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain.
Biotin carboxylase is a component of the acetyl-CoA
carboxylase multi-component enzyme which catalyzes the
first committed step in fatty acid synthesis in animals,
plants and bacteria. Most of the active site residues
reported in reference are in this C-terminal domain.
Length = 107
Score = 155 bits (395), Expect = 7e-45
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 343 ETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDE 402
E RIYAE+P GFLP G +T R P +R+++GV EGDEVS +YD MI+KL+V
Sbjct: 1 EARIYAEDPANGFLPSPGKITRYRFPG-GPGVRVDSGVYEGDEVSPYYDSMIAKLIVHGP 59
Query: 403 NRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFID 450
+R A+ ++++AL++ +I G+ TNI FL + + F G++ TGF++
Sbjct: 60 DREEAIARLRRALAETRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLE 107
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing carboxylation,
decarboxylation, or transcarboxylation. During this
process, biotin is covalently attached to a specific
lysine.
Length = 67
Score = 90.6 bits (226), Expect = 3e-22
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKN 711
V +PMPG V KVLV+ G V+ G P+ V+ AMKME +T+ +G+++EI G ++
Sbjct: 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAG 61
Query: 712 QNLVKI 717
Q LV I
Sbjct: 62 QLLVVI 67
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 80.5 bits (199), Expect = 6e-18
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 640 EPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEE 699
P +A + ++V SPM G V K V+ G VK G + +I AMKME I + G+++E
Sbjct: 61 APAPAAAAGGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKE 120
Query: 700 IFYAAGQSIQKNQNLVKIVP 719
I G ++ L I P
Sbjct: 121 ILVKNGDPVEYGDPLAVIEP 140
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 86.4 bits (215), Expect = 2e-17
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S P V SPMPG V KV V+ G VK GD ++V+ AMKME I + G ++EI G
Sbjct: 520 SAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD 579
Query: 707 SIQKNQNLVKIVP 719
+ L++I P
Sbjct: 580 RVNPGDVLMEIEP 592
>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
gene in MJ) [Amino acid transport and metabolism /
Nucleotide transport and metabolism].
Length = 400
Score = 80.8 bits (200), Expect = 3e-16
Identities = 71/308 (23%), Positives = 118/308 (38%), Gaps = 35/308 (11%)
Query: 17 GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIA 76
G AC+ ++ G VV V S+ ++AD+ Y + I
Sbjct: 18 GTQACKALKEE---GYGVVLVNSNPATIMTDPELADKVY------IEPITKE--PVEKII 66
Query: 77 VRSQCQAIHPGYG---------FLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
+ + AI P G L E G ++ G EAI K KE
Sbjct: 67 EKERPDAILPTLGGQTALNAALELKEKGVLEKY--GVEVV--GSDPEAIEIAEDKKLFKE 122
Query: 128 IMIKAEVPVIPGY-HGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
M + +PV H ++ +EI A+ IGYP+++K G GG G I +
Sbjct: 123 AMREIGIPVPSRIAHSVEEADEI----ADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEI 178
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYER-DCSVQRRH-QKI 244
+ R S +VL+E+ I + E +++ D N + + + H
Sbjct: 179 IEEGLRASPVE----EVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDS 234
Query: 245 IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEH 304
I APA ++ + L ++V R + ++F +DP GE Y +E+N R+
Sbjct: 235 ITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294
Query: 305 PVSEMITG 312
++ TG
Sbjct: 295 ALASKATG 302
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 67.5 bits (165), Expect = 2e-13
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 641 PEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEI 700
P+ +A + + SPMPG + KVLV G V P++++ AMKME I + ++G + I
Sbjct: 53 PQPAAAAGADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAI 112
Query: 701 FYAAGQSIQKNQNLVKI 717
GQ + L+ I
Sbjct: 113 HVTPGQVVNPGDGLITI 129
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681
+V+ G V + V PGQ V GD ++ I
Sbjct: 101 IVASSAGTVTAIHVTPGQVVNPGDGLITIG 130
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine residue
binds biotin in one group and lipoic acid in the other.
Note that the HMM does not currently recognise the
Glycine cleavage system H proteins.
Length = 73
Score = 64.2 bits (157), Expect = 5e-13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 652 VVSPMPG-----MVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+ SPM G + LV+ G VK G + + AMKME I + +G+++EI G
Sbjct: 3 IKSPMIGESVKEGTAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGD 62
Query: 707 SIQKNQNLVKI 717
+++ L KI
Sbjct: 63 TVEVGDPLAKI 73
>gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp
enzymes [Cell envelope biogenesis, outer membrane].
Length = 317
Score = 63.5 bits (155), Expect = 8e-11
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 42/212 (19%)
Query: 110 GPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY--HGEDQNEEILMEQAERIGYPLMIKAVR 167
G + A K +K + +PV P ++ + I+ E E +G+PL +K R
Sbjct: 94 GVLASAGA--MDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAR 151
Query: 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFN-DSKVLLEKYIQSPRHIEVQIIGDRY-- 224
G G V L+SA AF D VL E+ I R IEV ++G+ Y
Sbjct: 152 EGSSVGRSPVNV----EGDLQSALEL---AFKYDRDVLREQGITG-REIEVGVLGNDYEE 203
Query: 225 -----------GNYVYLYERDCSVQRRHQK------IIEEAPAPGISSEFRSRLGSTGVQ 267
G Y YE K + PA ++ E + ++
Sbjct: 204 QALPLGEIPPKGEEFYDYE---------AKYLSTGGAQYDIPAG-LTDEIHEEIKELALR 253
Query: 268 VARAVRYHNAGTVEFIMDPSSGEFYFMEMNTR 299
+A+ V+F +D GEF +E+NT
Sbjct: 254 AYKALGCLGLARVDFFVDDDEGEFVLLEVNTN 285
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 60.0 bits (146), Expect = 2e-10
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 21/187 (11%)
Query: 122 KSTSKEIMIKAEVPVIPGY--HGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K+ +E++ A +PV P + E+ + AE IG+P+++K G G G+ V
Sbjct: 5 KALMRELLRAAGLPVPPFFLVDDEEDLDAA----AEEIGFPVVLKPRDGAGSLGVFRVDS 60
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSP-RHIEVQIIGDRYGNYVYL----YERD 234
+A A L + E + + + L+E+YI H++ + G V+L Y
Sbjct: 61 AAELEAALAALAAEVE---DTREYLVEEYIDGDEYHVDGLVDD---GELVFLGVSRYLGP 114
Query: 235 CSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGT-VEFIMDPSSGEFYF 293
+ +E L +V +A+ N +EF + P G
Sbjct: 115 PPP--DFSEGVELGSVSPGEDPLPEALRELAERVLKALGLRNGVFHLEFFLTP-DGRPVL 171
Query: 294 MEMNTRL 300
+E+N R
Sbjct: 172 LEINPRP 178
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 59.1 bits (143), Expect = 2e-10
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSI 708
+ V +PMPG + ++LV+ GQ VK G ++++ AMKME I + G++++I G ++
Sbjct: 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTV 143
Query: 709 QKNQNLVKI 717
Q L+++
Sbjct: 144 DTGQPLIEL 152
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent carboxylases/decarboxylases,
the dihydrolipoyl acyltransferase component (E2) of
2-oxo acid dehydrogenases, and the H-protein of the
glycine cleavage system (GCS). These domains transport
CO2, acyl, or methylamine, respectively, between
components of the complex/protein via a biotinyl or
lipoyl group, which is covalently attached to a highly
conserved lysine residue.
Length = 73
Score = 56.3 bits (136), Expect = 3e-10
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G V K L + G VK GD + I AMK + + SG ++++ G ++ + LVKI
Sbjct: 14 GTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 62.3 bits (152), Expect = 6e-10
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKN 711
V +P+ G + KV+V GQ V GD ++++ AMKME I + +G + I G ++
Sbjct: 527 VTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVG 586
Query: 712 QNLVKIV 718
L+ +
Sbjct: 587 DTLLTLA 593
>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
Length = 304
Score = 60.5 bits (148), Expect = 7e-10
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 37/189 (19%)
Query: 125 SKEIMIKAEVPVIPGYH---GEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
+K + A +P P ED I +++G PL++K R G G+ V++
Sbjct: 102 TKLVWQAAGLPTPPWIVLTREEDLLAAI-----DKLGLPLVVKPAREGSSVGVSKVKEED 156
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR----------YGNYVY-- 229
A L A + D +VL+EKYI+ R + V ++G + Y Y
Sbjct: 157 ELQAALELAFK------YDDEVLVEKYIKG-RELTVAVLGGKALPVIEIVPAGEFYDYEA 209
Query: 230 LYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSG 289
Y + Q I PA G+ +E + L ++ RA+ G V+F++D G
Sbjct: 210 KYLAGGT-----QYIC---PA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLD-EDG 259
Query: 290 EFYFMEMNT 298
+ Y +E+NT
Sbjct: 260 KPYLLEVNT 268
>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This
family represents the C-terminal, catalytic domain of
the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
D-Alanine is one of the central molecules of the
cross-linking step of peptidoglycan assembly. There are
three enzymes involved in the D-alanine branch of
peptidoglycan biosynthesis: the pyridoxal
phosphate-dependent D-alanine racemase (Alr), the
ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Length = 201
Score = 56.1 bits (136), Expect = 7e-09
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 155 ERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFN-DSKVLLEKYIQSPR 213
E++GYP+ +K G G+ V +L+SA E AF D+KVL+E+ I R
Sbjct: 30 EKLGYPVFVKPANLGSSVGISKVTS----REELQSAIEE---AFQYDNKVLIEEAI-EGR 81
Query: 214 HIEVQIIGD-----------RYGNYVYLYERDCSVQRRHQKIIEEA-----PAPGISSEF 257
IE ++G+ R Y YE K I+ + PA + E
Sbjct: 82 EIECAVLGNEDLEVSPVGEIRLSGGFYDYE---------AKYIDSSAQIIVPAD-LPEEV 131
Query: 258 RSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
++ ++ +A+ ++F + GE Y E+NT
Sbjct: 132 EEQIQELALKAYKALGCRGLARIDFFLT-EDGEIYLNEVNT 171
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 58.9 bits (143), Expect = 9e-09
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 126 KEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLA 185
+E M + PV + E + A+ IGYP++++ GG G I +
Sbjct: 132 REAMKEIGEPVPESEIAH--SVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKE 189
Query: 186 QLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQR-----R 240
A S ++VL+EK + + IE +++ D N + + C+++
Sbjct: 190 IAERALSASPI----NQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGV 241
Query: 241 HQ-KIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTR 299
H I AP+ ++ + L +++ R + V+F ++P SG +Y +E+N R
Sbjct: 242 HTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPR 301
Query: 300 L 300
+
Sbjct: 302 V 302
Score = 53.5 bits (129), Expect = 3e-07
Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 35/245 (14%)
Query: 98 ANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI 157
A A+E + +G S E+I + E++ + +P + E +E A I
Sbjct: 646 AKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASEI 703
Query: 158 GYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEV 217
GYP++++ GG+ M IV + L A S + VL++KY++ ++V
Sbjct: 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDV 759
Query: 218 QIIGDRYGNYVYLY---ERDCSVQRRHQKIIEEA-----------PAPGISSEFRSRLGS 263
+ D G V + E H IEEA P +S+E R+
Sbjct: 760 DAVSD--GEEVLIPGIME--------H---IEEAGVHSGDSTCVLPPQTLSAEIVDRIKD 806
Query: 264 TGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVA 323
++A+ + ++F + GE Y +E+N R P TGV L++ V
Sbjct: 807 IVRKIAKELNVKGLMNIQFAVK--DGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVM 864
Query: 324 SGQEL 328
G++L
Sbjct: 865 LGKKL 869
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 55.4 bits (134), Expect = 8e-08
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 126 KEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLA 185
+++ + +P +PG +EE A+RIGYP++I+ GG+GM +V D
Sbjct: 675 YQLLDELGLPHVPG--LTATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYD----EP 728
Query: 186 QLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYL---YERDCSVQRRHQ 242
L + E+ S +L++++I + EV I D G V + E H
Sbjct: 729 ALEAYLAENAS--QLYPILIDQFI-DGKEYEVDAISD--GEDVTIPGIIE--------H- 774
Query: 243 KIIEEA-----------PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEF 291
IE+A P +S E + ++ +++A+ + + ++F++ + E
Sbjct: 775 --IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLA--NDEI 830
Query: 292 YFMEMNTRLQVEHPVSEMITGVDLVQ 317
Y +E+N R P TGV L +
Sbjct: 831 YVLEVNPRASRTVPFVSKATGVPLAK 856
Score = 54.2 bits (131), Expect = 2e-07
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 26/202 (12%)
Query: 110 GPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG 169
G + EAI+ + + +M + PV + E + AE+IG+P++++
Sbjct: 117 GTNIEAIQKGEDRERFRALMKELGEPV--PESEIVTSVEEALAFAEKIGFPIIVRPAYTL 174
Query: 170 GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY 229
GG G I + + S + LLE+ I + IE +++ DR GN +
Sbjct: 175 GGTGGGIAENLEELEQLFKQG--LQASPIHQ--CLLEESIAGWKEIEYEVMRDRNGNCIT 230
Query: 230 LYERDCSVQRRHQKIIEE-----------APAPGISSEFRSRLGSTGVQVARAVRYHNAG 278
+ C+++ I+ AP+ ++ + L S +++ A+
Sbjct: 231 V----CNMEN-----IDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGC 281
Query: 279 TVEFIMDPSSGEFYFMEMNTRL 300
++F +DP S ++Y +E+N R+
Sbjct: 282 NIQFALDPKSKQYYLIEVNPRV 303
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 54.4 bits (131), Expect = 1e-07
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSI 708
+ V +P+ G + KV V GQ V G+ ++++ AMKME I + +G + EI G ++
Sbjct: 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAV 576
Query: 709 QKNQNL 714
Q L
Sbjct: 577 SVGQVL 582
>gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed.
Length = 333
Score = 53.2 bits (129), Expect = 2e-07
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 43/198 (21%)
Query: 122 KSTSKEIMIKAEVPVIPGY--HGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K +K ++ A +PV P D E L E ++G P+ +K G G+ V++
Sbjct: 124 KILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKN 183
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD----------RYGNYVY 229
A L A D KVL+E+ I+ R IE ++G+ + Y
Sbjct: 184 EEELAAALDLAFEY------DRKVLVEQGIK-GREIECAVLGNDPKASVPGEIVKPDDFY 236
Query: 230 LYER---DCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV------RYHNAGTV 280
YE D S + PA +S E ++ ++ +A+ R V
Sbjct: 237 DYEAKYLDGSAE-------LIIPAD-LSEELTEKIRELAIKAFKALGCSGLAR------V 282
Query: 281 EFIMDPSSGEFYFMEMNT 298
+F + GE Y E+NT
Sbjct: 283 DFFLTE-DGEIYLNEINT 299
>gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. This
model describes D-Ala--D-Ala ligase, an enzyme that
makes a required precursor of the bacterial cell wall.
It also describes some closely related proteins
responsible for resistance to glycopeptide antibiotics
such as vancomycin. The mechanism of glyopeptide
antibiotic resistance involves the production of
D-alanine-D-lactate (VanA and VanB families) or
D-alanine-D-serine (VanC). The seed alignment contains
only chromosomally encoded D-ala--D-ala ligases, but a
number of antibiotic resistance proteins score above the
trusted cutoff of this model [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 315
Score = 51.9 bits (125), Expect = 4e-07
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 108 FVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP--GYHGEDQNEEILMEQ--AERIGYPLMI 163
+ G A K +K + +P + + L + AE +G+P+++
Sbjct: 92 YTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIV 151
Query: 164 KAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFN-DSKVLLEKYIQSPRHIEVQIIGD 222
K R G G+ V+ +L++A E AF D +VL+E++I R +EV I+G+
Sbjct: 152 KPAREGSSVGVSKVKS----EEELQAALDE---AFEYDEEVLVEQFI-KGRELEVSILGN 203
Query: 223 RYGNYV----------YLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV 272
+ Y YE + +I PAP + E ++ ++ +A+
Sbjct: 204 EEALPIIEIVPEIEGFYDYEAKYLDG-STEYVI---PAP-LDEELEEKIKELALKAYKAL 258
Query: 273 RYHNAGTVEFIMDPSSGEFYFMEMNT 298
V+F +D GE Y E+NT
Sbjct: 259 GCRGLARVDFFLDE-EGEIYLNEINT 283
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 49.0 bits (118), Expect = 8e-07
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 651 KVVSPMPGMV-------DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703
V SPM G V+ G VK G + +I AMK+ I + SG++ EI
Sbjct: 81 VVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVE 140
Query: 704 AGQSIQKNQNLVKIV 718
GQ ++ Q L I
Sbjct: 141 NGQPVEFGQPLFVIE 155
>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR
synthetase) [Nucleotide transport and metabolism].
Length = 375
Score = 51.5 bits (124), Expect = 8e-07
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 22 RIMRT-AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQ 80
R+M A ++GI+V+ + D DADA ++AD Y + + ++A ++
Sbjct: 14 RMMALAAARLGIKVIVL--DPDADAPAAQVADRVIVAA-------YDDPEALRELA--AK 62
Query: 81 CQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY 140
C I Y F + AE + + V PS +A+R + K+ + KA +PV +
Sbjct: 63 CDVI--TYEFENVPAEALEKLA--ASVKVFPSPDALRIAQDRLVEKQFLDKAGLPV-APF 117
Query: 141 HGEDQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFN 199
D EE+ A +G+P ++K RGG GKG +R A+ +LR+A
Sbjct: 118 QVVDSAEELD-AAAADLGFPAVLKTRRGGYDGKGQWRIRSDAD--LELRAAGLAEGGVP- 173
Query: 200 DSKVLLEKYIQSPRHIEVQIIGDR 223
+LE+++ R E+ +I R
Sbjct: 174 ----VLEEFVPFER--EISVIVAR 191
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 45.5 bits (109), Expect = 2e-06
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G + + LV+ G +V+ GD + + K + + +G++ +I G ++ Q + I
Sbjct: 15 GTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74
Score = 33.1 bits (77), Expect = 0.058
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
V +P G++ K+LV+ G V G I VI
Sbjct: 46 VEAPAAGVLAKILVEEGDTVPVGQVIAVI 74
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 70
Score = 44.8 bits (106), Expect = 3e-06
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQ 709
+KV + M G V K++V+ G V+ G ++++ +MKME I + +G +++I G +
Sbjct: 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVN 61
Query: 710 KNQNLVKI 717
+ L++I
Sbjct: 62 EGDVLLEI 69
>gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed.
Length = 372
Score = 47.8 bits (115), Expect = 1e-05
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 30/186 (16%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
A +G +V+ + D D D+ ++ADE + Y + A + ++A QC I
Sbjct: 21 AAPLGYKVIVL--DPDPDSPAAQVADEVIVAD-------YDDVAALRELA--EQCDVI-- 67
Query: 87 GYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144
Y F EN AE +A+ + P +A+ + T K+ + K +PV +
Sbjct: 68 TYEF--ENVPAEALDALAARVPVP--PGPDALAIAQDRLTEKQFLDKLGIPV-APFA-VV 121
Query: 145 QNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKV 203
+ E L +G P ++K RGG GKG ++R L +A
Sbjct: 122 DSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRS----AEDLEAAWAL----LGSVPC 173
Query: 204 LLEKYI 209
+LE+++
Sbjct: 174 ILEEFV 179
>gnl|CDD|205711 pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like.
Length = 50
Score = 42.5 bits (101), Expect = 1e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ P+ G V V V+ GQ+VK GD + +
Sbjct: 1 PVVNIAPPVSGRVVAVNVKEGQSVKKGDVLFTL 33
Score = 26.3 bits (59), Expect = 7.0
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 689 ITSGTSGIIEEIFYAAGQSIQKNQNLVKIVPS 720
I SG + + GQS++K L +
Sbjct: 5 IAPPVSGRVVAVNVKEGQSVKKGDVLFTLDSE 36
>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
Provisional.
Length = 326
Score = 47.6 bits (114), Expect = 1e-05
Identities = 61/325 (18%), Positives = 120/325 (36%), Gaps = 53/325 (16%)
Query: 33 RVVSVYSDID--ADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGY-- 88
RV+ DI A AL+ AD+ Y + + + Y++ ++LDI + + + P
Sbjct: 27 RVIGA--DISELAPALYF--ADKFYVVPKVTDPN-YID--RLLDICKKEKIDLLIPLIDP 79
Query: 89 --GFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQN 146
L++N + E + + S E I K + E + + +P Y E
Sbjct: 80 ELPLLAQNRD---RFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLE 136
Query: 147 EEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLE 206
+ + +PL +K G G+ V D +L ++++
Sbjct: 137 DFKAALAKGELQFPLFVKPRDGSASIGVFKVND----KEELEFLLEY------VPNLIIQ 186
Query: 207 KYIQSPRHIEVQIIGDRYGNYVYLYERD------CSVQRRHQKIIEEAPAPGISSEFRSR 260
++I+ G Y V D V R+ ++ + G++ +
Sbjct: 187 EFIE----------GQEYTVDVLC---DLNGEVISIVPRKRIEVRAGETSKGVTVKD-PE 232
Query: 261 LGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQL 320
L ++A A+ ++ + GE Y E+N R +P+S M G + W +
Sbjct: 233 LFKLAERLAEALGARGPLNIQCFVTD--GEPYLFEINPRFGGGYPLSYM-AGANEPDWII 289
Query: 321 -MVASGQELPLK---QEDLQLRGHS 341
+ G+ P+ +E L +R +
Sbjct: 290 RNLLGGENEPIIGEYKEGLYMRRYD 314
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 46.6 bits (111), Expect = 2e-05
Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 51/228 (22%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166
+ V SS+AI N G K + +++ KA +P E + + E IG+P+++K V
Sbjct: 74 VPVINSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKL--IEEIGFPVVLKPV 131
Query: 167 RGGGGKGMRIVRD--SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSP--RHIEVQIIGD 222
G G+ + + RD +A L + Q+ F +++YI+ P R I V ++GD
Sbjct: 132 FGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLF-----YVQEYIKKPGGRDIRVFVVGD 186
Query: 223 RYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTG---------------VQ 267
+Y R S +R+ L G ++
Sbjct: 187 EVIAAIY----------RIT-----------SGHWRTNLARGGKAEPCPLTEEIEELAIK 225
Query: 268 VARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDL 315
A+A+ G ++ + G E+N + ++ S TGV++
Sbjct: 226 AAKALGLDVVG-IDLLESEDRG-LLVNEVNPNPEFKN--SVKTTGVNI 269
>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, N5-carboxyaminoimidazole
ribonucleotide synthetase, which hydrolyzes ATP and
converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR.
In the presence of high concentrations of bicarbonate,
PurE is reported able to convert AIR to CAIR directly
and without ATP [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 352
Score = 46.9 bits (112), Expect = 2e-05
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG- 169
PS +A+ + + T K+ + K +PV P +D+ E L + +G+P+++KA GG
Sbjct: 88 PSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEE--LDAALQELGFPVVLKARTGGY 145
Query: 170 GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR 223
G+G +R+ A L A +E D + ++E+++ P E+ +I R
Sbjct: 146 DGRGQYRIRN----EADLPQAAKE----LGDRECIVEEFV--PFERELSVIVAR 189
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 47.0 bits (113), Expect = 4e-05
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 147 EEILMEQAERIGYPLMIKAVRGG---GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKV 203
EE L E AE IGYP++ VR GG+ M IV D +L RE+ D V
Sbjct: 694 EEAL-EVAEEIGYPVL---VRPSYVLGGRAMEIVYDE----EELERYMREAVKVSPDHPV 745
Query: 204 LLEKYIQSPRHIEVQIIGD 222
L++K+++ ++V I D
Sbjct: 746 LIDKFLEGAIEVDVDAICD 764
Score = 40.1 bits (95), Expect = 0.005
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 47/196 (23%)
Query: 126 KEIMIKAEVPVIPGY--HGEDQNEEILMEQAERIGYPLMIKAVR-----GGGGKGMRIVR 178
KE M K +PV H ++ E+ AE IGYP++I R GG G G I
Sbjct: 133 KEAMKKIGLPVPRSGIAHSMEEALEV----AEEIGYPVII---RPSFTLGGTGGG--IAY 183
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQ 238
+ + S ++VL+E+ + + E +++ D+ N + + CS
Sbjct: 184 NEEELEEIVERGLDLSPV----TEVLIEESLLGWKEYEYEVMRDKNDNCIIV----CS-- 233
Query: 239 RRHQKIIEE--------------APAPGISSEFRSRLGSTGVQVARAVRYHNAGT-VEFI 283
IE APA ++ + L + + R + G V+F
Sbjct: 234 ------IENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFA 287
Query: 284 MDPSSGEFYFMEMNTR 299
++P G + +EMN R
Sbjct: 288 LNPKDGRYIVIEMNPR 303
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 46.3 bits (109), Expect = 6e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSI 708
P + +PG + + V G VK G ++VI AMKME I + +G++ EI G +
Sbjct: 525 PGDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKV 584
Query: 709 QKNQNLVKI 717
Q L+++
Sbjct: 585 TPGQVLIRV 593
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 45.9 bits (109), Expect = 8e-05
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 142 GEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDS 201
G ++E + A+RIGYP++++ GG+ M IV L +A +
Sbjct: 721 GIARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDP----ER 776
Query: 202 KVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA-----------PA 250
VL++KY+ I+V + D GN V + IE+A P
Sbjct: 777 PVLVDKYLSDATEIDVDALADSEGNVVI-----GGIMEH----IEQAGVHSGDSACSLPT 827
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHP-VSEM 309
I S + + ++A+ + ++ + P SGE Y +E N R P VS+
Sbjct: 828 QTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITP-SGEVYIIEANPRASRTVPFVSKA 886
Query: 310 ITGVDLVQWQLMVASGQELP 329
I G L ++ +V SG+ L
Sbjct: 887 I-GHPLAKYASLVMSGKSLK 905
Score = 42.5 bits (100), Expect = 8e-04
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 19/247 (7%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIG-YPLMIKAVR 167
+G +AI+ + K+ M K + P +E E AE IG +PL+I+
Sbjct: 132 IGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDE--CFEIAEDIGEFPLIIRPAF 189
Query: 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNY 227
GG G I + F ++ S + S+VL+EK + + E++++ D N
Sbjct: 190 TLGGTGGGIAYNKEEFETICKAGLAASIT----SQVLVEKSLLGWKEYELEVMRDLADNV 245
Query: 228 VYLYERDCSVQR------RHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGT-V 280
V + CS++ I APA ++ + RL V + R + G+ V
Sbjct: 246 VII----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNV 301
Query: 281 EFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRG- 339
+F ++P GE +EMN R+ ++ TG + + ++ G L D+ L+
Sbjct: 302 QFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITLKTP 361
Query: 340 HSFETRI 346
SFE I
Sbjct: 362 ASFEPSI 368
>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain. This family does not
contain all known ATP-grasp domain members. This family
includes a diverse set of enzymes that possess
ATP-dependent carboxylate-amine ligase activity.
Length = 171
Score = 42.6 bits (101), Expect = 1e-04
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLR 188
K +P E E L+E + +GYP ++KA RGG GKG +VR A +
Sbjct: 2 QKLGLPTPRFAAAESLEE--LIEAGQELGYPCVLKARRGGYDGKGQYVVRS----EADIP 55
Query: 189 SAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGN-YVYLYERDCSVQRRHQK---I 244
A E V++E+++ P E+ ++ R + Y V+ +
Sbjct: 56 QAWEE----LGGGPVIVEEFV--PFDKELSVLVVRSVDGETAFYP---PVETIQEDGICR 106
Query: 245 IEEAPAP 251
APA
Sbjct: 107 ESVAPAR 113
>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2.
This enzyme is an alternative to PurN (TIGR00639)
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 380
Score = 43.2 bits (102), Expect = 3e-04
Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 23/203 (11%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+L+ GE+ + A+++G+ V++V +A A+ V A +Y + L+
Sbjct: 2 VLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVI-------NMLDGD 52
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIR-NM---GIKSTSK 126
+ + R + I P ++ +A F EG ++ P++ A + M GI+ +
Sbjct: 53 ALRAVIEREKPDYIVPEIEAIATDALFELEKEGYFVV---PNARATKLTMNREGIRRLAA 109
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
E + +P Y D +E L E E+IGYP ++K V GKG +VR +
Sbjct: 110 E---ELGLPTSR-YMFADSLDE-LREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKA 164
Query: 187 LRSAQRESQSAFNDSKVLLEKYI 209
AQ ++ +V++E++I
Sbjct: 165 WEYAQEGARGGAG--RVIVEEFI 185
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Length = 809
Score = 43.3 bits (102), Expect = 5e-04
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 35/198 (17%)
Query: 122 KSTSKEIMIKAEVPVIP----GYHGEDQNEEILMEQ-AERIGYPLMIKAVRGGGGKGMRI 176
K +K VPV+P G + E+ + E +P+ +K G G+
Sbjct: 569 KVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFE 628
Query: 177 VRDSANFLAQLRSAQRESQSAF-NDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY--LYER 233
V + +LR E AF D+ V +E+ R IEV +GD YV +ER
Sbjct: 629 VHNVE----ELRDKISE---AFLYDTDVFVEESRLGSREIEVSCLGDGSSAYVIAGPHER 681
Query: 234 DCSVQRRHQKII---EEAPAPGISS-----------EFRSRLGSTGVQVARAVRYHNAGT 279
R I E+ G SS E + ++ ++ R ++ +
Sbjct: 682 -----RGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCR 736
Query: 280 VEFIMDPSSGEFYFMEMN 297
++F +D G F+ EMN
Sbjct: 737 IDFFLD-EEGNFWLSEMN 753
>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. This model is designed to identify biotin
carboxyl carrier protein as a peptide of acetyl-CoA
carboxylase. Scoring below the trusted cutoff is a
related protein encoded in a region associated with
polyketide synthesis in the prokaryote Saccharopolyspora
hirsuta, and a reported chloroplast-encoded biotin
carboxyl carrier protein that may be highly derived from
the last common ancestral sequence. Scoring below the
noise cutoff are biotin carboxyl carrier domains of
other enzymes such as pyruvate carboxylase.The gene name
is accB or fabE [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 156
Score = 40.2 bits (94), Expect = 0.001
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 651 KVVSPMPGMV-------DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703
V SPM G K V+ G VK G + ++ AMK+ I + +G + EI
Sbjct: 82 FVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVE 141
Query: 704 AGQSIQKNQNLVKI 717
GQ ++ Q L+ I
Sbjct: 142 NGQPVEYGQPLIVI 155
>gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase. Alternate
name: glycinamide ribonucleotide synthetase (GARS). This
enzyme appears as a monofunctional protein in
prokaryotes but as part of a larger, multidomain protein
in eukaryotes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 422
Score = 41.5 bits (98), Expect = 0.001
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRG 168
GP+ EA + G K+ +K+ M + +P Y EE + G P+++KA
Sbjct: 92 FGPTKEAAQLEGSKAFAKDFMKRYGIP-TAEYEVFTDPEE-AKSYIQEKGAPIVVKADGL 149
Query: 169 GGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYI 209
GKG+ + + + + + + +V++E+++
Sbjct: 150 AAGKGVIVAKTNEEAIKAVEDILEQKFGDAG-ERVVIEEFL 189
>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin is
an insoluble storage polymer for carbon, nitrogen, and
energy, found in most Cyanobacteria. The polymer has a
backbone of L-aspartic acid, with most Asp side chain
carboxyl groups attached to L-arginine. The polymer is
made by this enzyme, cyanophycin synthetase, and
degraded by cyanophycinase. Heterologously expressed
cyanophycin synthetase in E. coli produces a closely
related, water-soluble polymer with some Arg replaced by
Lys. It is unclear whether enzymes that produce soluble
cyanophycin-like polymers in vivo in non-Cyanobacterial
species should be designated as cyanophycin synthetase
itself or as a related enzyme. This model makes the
designation as cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions [Cellular
processes, Biosynthesis of natural products].
Length = 864
Score = 42.1 bits (99), Expect = 0.001
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI---VR 178
K +KEI+ A VPV G Q+ E E A+ +GYP++IK G G+G+ I R
Sbjct: 214 KDLTKEILSDAGVPVPEG--TVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTR 271
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR 223
D + +A ES S V++E++I R + ++G +
Sbjct: 272 DEIE--SAYEAAVEES------SGVIVERFITG-RDHRLLVVGGK 307
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 40.8 bits (96), Expect = 0.001
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 112 SSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGG 171
SS I G K + + KA VP Y D+ ++ AE +GYP+++K V G G
Sbjct: 78 SSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREA--ALKLAEALGYPVVLKPVIGSWG 135
Query: 172 KGMRIVRDSANFLAQLRSAQRESQSAFNDSKV---LLEKYIQSP-RHIEVQIIGDR 223
+ + ++RD + L E + S+ +++YI P R I V +IGD
Sbjct: 136 RLVALIRDKDELESLL-----EHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDE 186
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 40.5 bits (95), Expect = 0.003
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G + + L + G VK GD ++ + K + + +G++ +I G ++ + +I
Sbjct: 17 GTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARI 76
>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 40.2 bits (95), Expect = 0.003
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRG 168
GP+ A + G K+ +K+ M K +P Y + E + G P+++KA
Sbjct: 91 FGPTKAAAQLEGSKAFAKDFMKKYGIP-TAEY-EVFTDPEEAKAYIDEKGAPIVVKADGL 148
Query: 169 GGGKGMRIVRDSANFLAQLRSAQRE--SQSAFND--SKVLLEKY 208
GKG+ + L + +A E +AF ++V++E++
Sbjct: 149 AAGKGVIVAMT----LEEAEAAVDEMLEGNAFGSAGARVVIEEF 188
>gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide
formyltransferase (GAR transformylase) [Nucleotide
transport and metabolism].
Length = 394
Score = 40.0 bits (94), Expect = 0.003
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 27/213 (12%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+++ GE+ + A+++G+ V++V +A A+ V A +Y + L+
Sbjct: 15 VMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVI-------DMLDGD 65
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIR-NM---GIKSTSK 126
+ + R + I P ++ +A EG ++ P++ A + M GI+ +
Sbjct: 66 ALRAVVEREKPDYIVPEIEAIATDALVELEEEGYTVV---PNARATKLTMNREGIRRLAA 122
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
E + +P Y D + E L E+IG+P ++K V GKG +VR +
Sbjct: 123 E---ELGLPTSK-YRFAD-SLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKA 177
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQI 219
AQ+ + +V++E+++ + +I
Sbjct: 178 WEYAQQGGRGG--SGRVIVEEFV----KFDFEI 204
>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 38.2 bits (90), Expect = 0.016
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 126 KEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI-VRDSANFL 184
K ++ A VPV G + E E AE IGYP+++K + G G+G+ + +
Sbjct: 219 KRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIE 276
Query: 185 AQLRSAQRESQSAFNDSKVLLEKYIQ 210
A A +ES S V++E+YI
Sbjct: 277 AAYAVASKES------SDVIVERYIP 296
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 37.5 bits (88), Expect = 0.021
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMK--MEYVITSGTSGIIEEIFYAAGQSIQKNQNLV 715
G + + LV+ G VK G P+ + K +E I S +G + ++ G + +
Sbjct: 17 GEIVEWLVKVGDTVKEGQPLAEVETDKATVE--IPSPVAGTVAKLLVEEGDVVPVGSVIA 74
Query: 716 KI 717
I
Sbjct: 75 VI 76
Score = 32.5 bits (75), Expect = 0.77
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVI 680
SP+ G V K+LV+ G V G I VI
Sbjct: 50 SPVAGTVAKLLVEEGDVVPVGSVIAVI 76
>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
(A) domain. Phosphoribosylglycinamide synthetase
catalyzes the second step in the de novo biosynthesis of
purine. The reaction catalyzed by
Phosphoribosylglycinamide synthetase is the ATP-
dependent addition of 5-phosphoribosylamine to glycine
to form 5'phosphoribosylglycinamide. This domain is
related to the ATP-grasp domain of biotin
carboxylase/carbamoyl phosphate synthetase (see
pfam02786).
Length = 193
Score = 36.5 bits (85), Expect = 0.024
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
KS +K+ M + +P Y EE G+P ++KA GKG+ + D+
Sbjct: 3 KSFAKDFMKRHGIP-TAEYETFTDPEE-AKSYIREAGFPAVVKADGLAAGKGVIVAMDNE 60
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKY 208
+ + + + V++E++
Sbjct: 61 EAIKAVDEILEQKKFGEAGEPVVIEEF 87
>gnl|CDD|185090 PRK15136, PRK15136, multidrug efflux system protein EmrA;
Provisional.
Length = 390
Score = 36.6 bits (85), Expect = 0.037
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681
+K+VSPM G V + VQ G + P+M ++
Sbjct: 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247
>gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional.
Length = 343
Score = 36.6 bits (85), Expect = 0.040
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 154 AERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPR 213
A + YP+ +K R G G+ V + + SA++ DSKVL+E+ +
Sbjct: 161 AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAV-VGS 213
Query: 214 HIEVQIIGDRYGNYVYLYERDCSVQ---RRHQKIIEEAPAPG-----------ISSEFRS 259
+ ++G+ V ++ R HQ E P G IS+E RS
Sbjct: 214 EVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQ---ENEPEKGSENSTIIVPADISAEERS 270
Query: 260 RLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNT 298
R+ T + RA+ V+ + G E+NT
Sbjct: 271 RVQETAKAIYRALGCRGLARVDMFLQE-DGTVVLNEVNT 308
>gnl|CDD|222128 pfam13437, HlyD_3, HlyD family secretion protein. This is a family
of largely bacterial haemolysin translocator HlyD
proteins.
Length = 102
Score = 34.3 bits (79), Expect = 0.041
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMK 684
+ +P+ G+V ++ V+ GQ V GDP+ I+
Sbjct: 1 VIRAPIDGVVAELDVEEGQVVAAGDPLAEIVDPD 34
Score = 28.9 bits (65), Expect = 3.0
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 688 VITSGTSGIIEEIFYAAGQSIQKNQNLVKIVP 719
VI + G++ E+ GQ + L +IV
Sbjct: 1 VIRAPIDGVVAELDVEEGQVVAAGDPLAEIVD 32
>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Provisional.
Length = 71
Score = 33.2 bits (76), Expect = 0.041
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQ 709
V + + V +V+V G + GD ++++ +MKME + + +G + ++ + G IQ
Sbjct: 5 VRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQ 62
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
V++ + G V KV V G ++ GD I VI
Sbjct: 42 VLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 36.7 bits (85), Expect = 0.045
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 159 YPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQ 218
YP+++K G G G+R+ A A + +R A L++ Y++ + V+
Sbjct: 143 YPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAA-----LVQAYVEGDEY-SVE 196
Query: 219 IIGDRYGNYVYLYERDCSVQRRHQ-------KIIEEAPAPGISSEFRSRLGSTGVQVARA 271
+ G+ V + R+H +I + PAP +S+ R R+ T ++ A
Sbjct: 197 TLTVARGHQVL------GITRKHLGPPPHFVEIGHDFPAP-LSAPQRERIVRTVLRALDA 249
Query: 272 VRYH-NAGTVEFIMDPSSGEFYFMEMNTRL 300
V Y E + +E+N RL
Sbjct: 250 VGYAFGPAHTELRV--RGDTVVIIEINPRL 277
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 35.9 bits (83), Expect = 0.058
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVI 689
+ + +P G V + VQ GQ V G P+M ++ + YV
Sbjct: 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQMYVE 244
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
Length = 577
Score = 36.2 bits (84), Expect = 0.064
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRG 168
V P S IR + K K K +P+ P + D + E + + GYPLM+K+ R
Sbjct: 109 VQPKSSTIRIIQDKYAQKVHFSKHGIPL-PEFMEID-DLESAEKAGDLFGYPLMLKSRRL 166
Query: 169 G-GGKGMRIVRDSANFLAQLRS 189
G+G + + + + + +
Sbjct: 167 AYDGRGNAVAKTEEDLSSAVAA 188
>gnl|CDD|236454 PRK09288, purT, phosphoribosylglycinamide formyltransferase 2;
Validated.
Length = 395
Score = 35.9 bits (84), Expect = 0.077
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 146 NEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSA--FNDSKV 203
+ E L E IGYP ++K V GKG +VR + A +Q +V
Sbjct: 137 SLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSP----EDIEKAWEYAQEGGRGGAGRV 192
Query: 204 LLEKYI 209
++E++I
Sbjct: 193 IVEEFI 198
>gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain. No functional
information or experimental verification of function is
known in this family. This family appears to be an
ATP-grasp domain (Pers. obs. A Bateman).
Length = 159
Score = 34.3 bits (79), Expect = 0.086
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 34/160 (21%)
Query: 151 MEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS--AQR----ESQSA---FNDS 201
E+ ++K G GG+G+R V + + + Q E S +
Sbjct: 23 AEEPTEEEKKYIVKPRDGCGGEGVRFVENGREDEEFIENVIIQEFIEGEPLSVSVLSDGE 82
Query: 202 KVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRL 261
KVL P + Q+I + +VY S +++ E A +
Sbjct: 83 KVL-------PLSVNRQLIDNAGSGFVYAGNVTPSRTELKEELEEL--AEEVVEALPGLN 133
Query: 262 GSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
G G V+ ++ + G Y +E+N R+
Sbjct: 134 GYVG--------------VDLVL--TDGGPYVIEVNPRIT 157
>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 35.4 bits (83), Expect = 0.11
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRG 168
GP+ A + G K+ +K+ M + +P Y EE L + G P+++KA
Sbjct: 90 FGPTKAAAQLEGSKAFAKDFMARYGIPT-AAYETFTDAEEAL-AYLDEKGAPIVVKADGL 147
Query: 169 GGGKGMRIVRDSANFLAQLRSAQRE--SQSAFNDS--KVLLE 206
GKG+ + L + ++A + + + F D+ +V++E
Sbjct: 148 AAGKGVVVAMT----LEEAKAAVDDMLAGNKFGDAGARVVIE 185
>gnl|CDD|237579 PRK13987, PRK13987, cell division topological specificity factor
MinE; Provisional.
Length = 91
Score = 32.7 bits (75), Expect = 0.12
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKM 50
L ILI +RG+I+ ++ K+ ++V+S Y +ID + + +KM
Sbjct: 21 LKLILIHDRGDISPDVLEMIKEDILKVISKYVEIDNEDVDIKM 63
>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated.
Length = 80
Score = 32.3 bits (74), Expect = 0.14
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 652 VVSPMPGMVDK-------VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704
+VSP+PG + V+ G AV GD + +I MK + + +G + E
Sbjct: 6 IVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVED 65
Query: 705 GQSIQKNQNLVKI 717
G+ ++ Q L +I
Sbjct: 66 GEPVEAGQVLARI 78
>gnl|CDD|180678 PRK06748, PRK06748, hypothetical protein; Validated.
Length = 83
Score = 32.1 bits (73), Expect = 0.15
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM-KMEYVITSGTSGIIEEIFYAAGQSIQK 710
V SP G V+K+ V+ V + + +I + K + I G SG IE + GQ+I
Sbjct: 7 VYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIAD 66
Query: 711 NQNLVKI 717
+ L+ +
Sbjct: 67 QKLLITV 73
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 34.2 bits (79), Expect = 0.23
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVII 681
+ + +P+ G V + V+ GQ V G P+M ++
Sbjct: 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALV 240
Score = 29.2 bits (66), Expect = 6.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ + G V +V V+ Q VK GD + I
Sbjct: 56 IAPQVSGRVTEVNVKDNQLVKKGDVLFRI 84
>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase;
Provisional.
Length = 426
Score = 34.1 bits (78), Expect = 0.28
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 110 GPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGG 169
GP S + G K +K +M +A++P + + + ++E + P++IKA
Sbjct: 97 GPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEML--PIVIKADGLA 154
Query: 170 GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPR-HIEVQIIGDRY 224
GKG+ + + L+ ++ + + ++V++E++++ I GD Y
Sbjct: 155 AGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEASIFAISDGDSY 210
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 34.1 bits (78), Expect = 0.30
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQ 709
G V +VLV+PG V+ G ++ + + K + S +GII+EI G ++
Sbjct: 14 GEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLP 65
>gnl|CDD|238329 cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation
pathway in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria.
4HBT forms a homotetramer with four active sites. There
is no evidence to suggest that 4HBT is related to the
type I thioesterases functioning in primary or secondary
metabolic pathways. Each subunit of the 4HBT tetramer
adopts a so-called hot-dog fold similar to those of
beta-hydroxydecanoyl-ACP dehydratase, (R)-specific
enoyl-CoA hydratase, and type II, thioesterase (TEII).
Length = 110
Score = 31.0 bits (71), Expect = 0.58
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 361 NLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLA 407
+ +LRP D + +ET V+ S ++ ++ E+ L
Sbjct: 58 EIDYLRPLRLGDRLTVETRVLRLGRKSFTFE-----QEIFREDGELL 99
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 32.7 bits (75), Expect = 0.63
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G V + + G VK + I +I K+ I + SG+I +IF G +++ L +I
Sbjct: 59 GTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEI 118
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer membrane
[Transport and binding proteins, Unknown substrate].
Length = 322
Score = 32.3 bits (74), Expect = 0.87
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 638 SLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPI 677
SLE D A + + + G + K+ V+ GQ VK G +
Sbjct: 20 SLEAVDEA-----DLAAEVAGKITKISVREGQKVKKGQVL 54
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 32.5 bits (74), Expect = 0.93
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 87 GYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQN 146
G+ + +N +A++V + P EA+ + + + + AE PVI G +
Sbjct: 161 GWQEIPDNDYYASSVSYQTPLLPAPDVEAV------TRAVQTLKAAERPVIYYGIGARKA 214
Query: 147 EEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFND 200
E L +E++ PL+ G I+ D + A L SA R +Q N+
Sbjct: 215 GEELEALSEKLKIPLIST------GLAKGIIED--RYPAYLGSAYRVAQKPANE 260
>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
Length = 364
Score = 32.1 bits (73), Expect = 0.98
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 134 VPVIP--GYHGED---QNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLR 188
+P++P G+ D E I + E +GYP+++K G G+ + + Q+
Sbjct: 142 IPLVPFIGFRKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNE----NQIE 197
Query: 189 SAQRESQSAFN-DSKVLLEKYIQSPRHIEVQIIGD 222
E AF D V++EK+I++ R IE +IG+
Sbjct: 198 KCIEE---AFKYDLTVVIEKFIEA-REIECSVIGN 228
>gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase;
Provisional.
Length = 486
Score = 32.3 bits (74), Expect = 1.0
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 109 VGPSSEAIRNMGIKSTSKEIMIKAEVPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAV 166
G SS+ R K ++E+M K IPG + + E + E G + IK
Sbjct: 97 FGASSKCARIEKSKVWARELMWKYS---IPGRLRYKVFYDVEEAAKFIEYGG-SVAIKPA 152
Query: 167 RGGGGKGMRIVRDSANFLAQ-LRSAQRES------QSAFN---DSKVLLEKYIQSPRHIE 216
R GGKG++++ D +L+Q R A +S SA+ + K+L+E+ + +
Sbjct: 153 RQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGVEYT- 211
Query: 217 VQIIGD 222
+Q++ D
Sbjct: 212 LQVLTD 217
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 31.3 bits (71), Expect = 1.6
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQN 713
SP PG + V+ G V+ G + +I AMK+ I + SG I EI G+ + +
Sbjct: 211 SPAPG--EPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTP 268
Query: 714 LVKIVP 719
L I P
Sbjct: 269 LFVIEP 274
>gnl|CDD|152415 pfam11980, DUF3481, Domain of unknown function (DUF3481). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 80
amino acids in length. This domain is found associated
with pfam00754, pfam00431, pfam00629. This domain has
two completely conserved residues (Y and E) that may be
functionally important.
Length = 84
Score = 29.1 bits (65), Expect = 1.6
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 660 VDKVLVQPGQAVKTGDPIMV-IIAM 683
VD V VQPG +KT DPI+ IIAM
Sbjct: 4 VDTVSVQPGNMLKTLDPILYTIIAM 28
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 31.5 bits (72), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
V SP G+V ++ V+ G V+TG IM+
Sbjct: 46 VPSPQAGVVKEIKVKVGDKVETGALIMIF 74
Score = 30.4 bits (69), Expect = 4.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
V +P G V ++ V G VKTG IM
Sbjct: 250 VPAPFAGTVKEIKVNVGDKVKTGSLIMRF 278
>gnl|CDD|218801 pfam05896, NQRA, Na(+)-translocating NADH-quinone reductase subunit
A (NQRA). This family consists of several bacterial
Na(+)-translocating NADH-quinone reductase subunit A
(NQRA) proteins. The Na(+)-translocating NADH:
ubiquinone oxidoreductase (Na(+)-NQR) generates an
electrochemical Na(+) potential driven by aerobic
respiration.
Length = 257
Score = 30.6 bits (70), Expect = 2.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 657 PGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVI-TSGTSGIIEEI 700
GM K+LV+ G VK G P+ K V T+ SG + I
Sbjct: 37 VGMKPKMLVKEGDKVKAGQPLFE--DKKNPGVKFTAPASGTVVAI 79
>gnl|CDD|235426 PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase
subunit A; Provisional.
Length = 448
Score = 30.9 bits (71), Expect = 2.3
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 18/72 (25%)
Query: 640 EPED--SALSDPSKV-VSPMP--GMVDKVLVQPGQAVKTGDPIMVIIAMKMEY------V 688
PE P V + G+ K+ V+ G VK G P+ E
Sbjct: 16 APEQVIEDGPAPKTVALLGEDYVGLRPKMKVKEGDKVKKGQPL-------FEDKKNPGVK 68
Query: 689 ITSGTSGIIEEI 700
TS SG + I
Sbjct: 69 FTSPASGTVVAI 80
>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 30.9 bits (70), Expect = 2.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 689 ITSGTSGIIEEIFYAAGQSIQKNQNLVKIVPS 720
+ SGI+ I G ++ LV++ P+
Sbjct: 5 VQPQVSGIVIRILVKEGDRVKAGDVLVRLDPT 36
Score = 30.9 bits (70), Expect = 2.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
++V + G+V ++LV+ G VK GD ++ +
Sbjct: 3 AEVQPQVSGIVIRILVKEGDRVKAGDVLVRL 33
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 30.9 bits (71), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVI 680
SP+ G+V ++ V+ G V G ++VI
Sbjct: 166 SPVAGVVKEIKVKVGDKVSVGSLLVVI 192
Score = 30.6 bits (70), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVI 680
SP G+V ++ V+ G V G + VI
Sbjct: 49 SPAAGVVKEIKVKVGDTVSVGGLLAVI 75
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 30.4 bits (69), Expect = 3.3
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 111 PSSEAIRNMGIKSTSKEIMIKAEVPVIPGY----HGEDQNEEILMEQAERI 157
P EA R++G SK ++ KA+V V PG HG+ L+E +RI
Sbjct: 327 PIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRI 377
>gnl|CDD|239535 cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with
a hot dog fold that belongs to a conserved family of
proteins found in prokaryotes and archaea but not in
eukaryotes. FkbR2 has sequence similarity to
(R)-specific enoyl-CoA hydratase, the peroxisomal
Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
fatty acid synthase beta subunit. The function of FkbR2
is unknown.
Length = 146
Score = 29.5 bits (67), Expect = 3.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 361 NLTHLRPPEHSDTIRIETGVIEGDE 385
+ P H DT+ E+ V+ E
Sbjct: 85 EVRFPAPVFHGDTLYAESEVLSKRE 109
>gnl|CDD|240175 cd05154, ACAD10_11_like, Acyl-CoA dehydrogenase (ACAD) 10 and 11,
N-terminal domain, and similar proteins. This subfamily
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of bacterial and eukaryotic proteins with
similarity to the N-terminal domains of vertebrate
ACAD10 and ACAD11. ACADs are a family of flavoproteins
that are involved in the beta-oxidation of fatty
acyl-CoA derivatives. ACAD deficiency can cause
metabolic disorders including muscle fatigue,
hypoglycemia, and hepatic lipidosis, among them. There
are at least 11 distinct ACADs, some of which show
distinct substrate specificities to either
straight-chain or branched-chain fatty acids. ACAD10 is
widely expressed in human tissues and is highly
expressed in liver, kidney, pancreas, and spleen. ACAD10
and ACAD11 contain a long N-terminal domain with
similarity to phosphotransferases with a PK fold, which
is absent in other ACADs. They may exhibit multiple
functions in acyl-CoA oxidation pathways.
Length = 223
Score = 29.9 bits (68), Expect = 3.7
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 248 APAPGISSEFR--SRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEM 296
A ++ E+R L TGV V + + +V + P FY ME
Sbjct: 37 PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSV--LGTP----FYVMER 81
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 30.0 bits (68), Expect = 4.0
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 97 FANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAER 156
F E + + ++IR K + +++ KA +PV P D +E AE
Sbjct: 96 FLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRD-PDEAAEFVAEH 153
Query: 157 IGYPLMIKAVRGGGGKG-MRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRH- 214
+G+P+++K + G GG+G + L+ L E+ + +++++YI +
Sbjct: 154 LGFPVVLKPLDGSGGRGVFLVEDADPELLSLL-----ETLTQEGRKLIIVQEYIPKAKRD 208
Query: 215 IEVQIIGDR 223
++G
Sbjct: 209 DRRVLVGGG 217
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 30.3 bits (69), Expect = 4.0
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSI 708
G V LVQ G V+ GD ++ + K+ + + +G + G+++
Sbjct: 17 GKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETL 67
>gnl|CDD|216566 pfam01551, Peptidase_M23, Peptidase family M23. Members of this
family are zinc metallopeptidases with a range of
specificities. The peptidase family M23 is included in
this family, these are Gly-Gly endopeptidases. Peptidase
family M23 are also endopeptidases. This family also
includes some bacterial lipoproteins such as Escherichia
coli murein hydrolase activator NlpD, for which no
proteolytic activity has been demonstrated. This family
also includes leukocyte cell-derived chemotaxin 2
(LECT2) proteins. LECT2 is a liver-specific protein
which is thought to be linked to hepatocyte growth
although the exact function of this protein is unknown.
Length = 96
Score = 28.3 bits (64), Expect = 4.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 661 DKVLVQPGQAVKTGDPI 677
K+LV+ GQ VK G I
Sbjct: 53 SKILVKVGQRVKAGQVI 69
>gnl|CDD|199870 cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate
desuccinylase (ASTE)/aspartoacylase (ASPA)-like
subfamily; subgroup includes Pseudomonas aeruginosa
AotO. An uncharacterized subgroup of the
Succinylglutamate desuccinylase (ASTE)/aspartoacylase
(ASPA) subfamily which is part of the the M14 family of
metallocarboxypeptidases. This subgroup includes
Pseudomonas aeruginosa AotO and related proteins. ASTE
catalyzes the fifth and last step in arginine catabolism
by the arginine succinyltransferase pathway, and
aspartoacylase (ASPA, also known as aminoacylase 2, and
ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid
(NAA) into aspartate and acetate. NAA is abundant in the
brain, and hydrolysis of NAA by ASPA may help maintain
white matter. ASPA is an NAA scavenger in other tissues.
Mutations in the gene encoding ASPA cause Canavan
disease (CD), a fatal progressive neurodegenerative
disorder involving dysmyelination and spongiform
degeneration of white matter in children. This enzyme
binds zinc which is necessary for activity. Measurement
of elevated NAA levels in urine is used in the diagnosis
of CD. The gene encoding P. aeruginosa AotO was
characterized as part of an operon encoding an arginine
and ornithine transport system, however it is not
essential for arginine and ornithine uptake.
Length = 359
Score = 29.9 bits (68), Expect = 4.9
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 646 LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM----KMEYVITSGTSGII 697
L+ + +P G+V PG V+ GD + I+ + + G++
Sbjct: 286 LAGYEMLYAPAGGLVV-YRAAPGDWVEAGDLLAEILDPLGDGSGTTAVRAPQDGVL 340
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 30.1 bits (68), Expect = 5.1
Identities = 25/150 (16%), Positives = 41/150 (27%), Gaps = 16/150 (10%)
Query: 22 RIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQC 81
+ ++ I + + D V++A R G D L K +R++
Sbjct: 507 FVFEMLEEEAIEELLASGFSEEDIRVVRVAP--VRYVGGGQ-DAELEVLKSDSEEIRAEF 563
Query: 82 QAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGY- 140
A + NAV V EAI S I+ GY
Sbjct: 564 --------EEPHEARYGNAVGARPGEVVAIRVEAIGPRDKPVLSPLEEIERVFAPFLGYR 615
Query: 141 ----HGEDQNEEILMEQAERIGYPLMIKAV 166
G + + G + A+
Sbjct: 616 EAYFAGLWAETPVYEREKLAGGDEVEGPAI 645
>gnl|CDD|225101 COG2190, NagE, Phosphotransferase system IIA components
[Carbohydrate transport and metabolism].
Length = 156
Score = 29.1 bits (66), Expect = 5.2
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 656 MPGMVDKVLVQPGQAVKTGDPIMVI----IAMKMEYVIT----SGTSGIIEEIFYAAGQS 707
+ G + LV+ G VK GDP++ I K IT + + + + G
Sbjct: 84 LNGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGE 143
Query: 708 IQKNQNLVKIV 718
++ + L+ ++
Sbjct: 144 VKAGETLLLVI 154
>gnl|CDD|133100 cd06242, M14-like_1_5, Peptidase M14-like domain; uncharacterized
subgroup. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by an N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The A/B
enzymes can be further divided based on their substrate
specificity; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 268
Score = 29.3 bits (66), Expect = 5.9
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 536 LLTGFRMNHSHVK-----TVQIQHLNKEYNVQVTLSAHTYRV 572
L TG+ N H K T I+ ++N + + AH Y
Sbjct: 114 LATGYDPNRDHTKLARQQTRDIKEAFSKFNPHIAIDAHEYGA 155
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase,
formyltetrahydrofolate-dependent. This model describes
phosphoribosylglycinamide formyltransferase (GAR
transformylase), one of several proteins in
formyl_transf (Pfam family pfam00551). This enzyme uses
formyl tetrahydrofolate as a formyl group donor to
produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a
different GAR transformylase, uses ATP and formate
rather than formyl tetrahydrofolate. Experimental proof
includes complementation of E. coli purN mutants by
orthologs from vertebrates (where it is a domain of a
multifunctional protein), Bacillus subtilis, and
Arabidopsis. No archaeal example was detected. In
phylogenetic analyses, the member from Saccharomyces
cerevisiae shows a long branch length but membership in
the family, while the formyltetrahydrofolate
deformylases form a closely related outgroup [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 190
Score = 29.3 bits (66), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 127 EIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGK 172
I+ +A+VP++P E + I + E YPL I G K
Sbjct: 147 PIIAQAKVPILPEDTEETLEQRIH--KQEHRIYPLAIAWFAQGRLK 190
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 29.7 bits (67), Expect = 6.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 114 EAIRNMGIKSTSKEIMIKAEVPVIPGY----HGEDQNEEILMEQAERI 157
E R++G SK+++ +A+V V PG +G++ L+E RI
Sbjct: 340 EPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRI 387
>gnl|CDD|151819 pfam11379, DUF3182, Protein of unknown function (DUF3182). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 355
Score = 29.2 bits (66), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 160 PLMIKAVRGGGGKGMRIVRDSANFLAQL 187
P+ +K R GG+G ++V D+ A L
Sbjct: 138 PVRLKPPRACGGRGQQVVADADALDAAL 165
>gnl|CDD|218297 pfam04864, Alliinase_C, Allinase. Allicin is a thiosulphinate that
gives rise to dithiines, allyl sulphides and ajoenes,
the three groups of active compounds in Allium species.
Allicin is synthesised from sulfoxide cysteine
derivatives by alliinase (EC:4.4.1.4), whose C-S lyase
activity cleaves C(beta)-S(gamma) bonds. It is thought
that this enzyme forms part of a primitive plant defence
system.
Length = 362
Score = 29.3 bits (66), Expect = 8.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 625 TGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMP 657
TGS Q L Y+L P + S P KVV+ P
Sbjct: 73 TGSTQL-LQAAVYALSPNATPTSPPVKVVAAAP 104
>gnl|CDD|236946 PRK11649, PRK11649, putative peptidase; Provisional.
Length = 439
Score = 29.2 bits (66), Expect = 9.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 662 KVLVQPGQAVKTGDPI 677
K+LV+PGQ VK GD I
Sbjct: 364 KLLVKPGQKVKRGDRI 379
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 29.0 bits (65), Expect = 9.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 58 EGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIR 117
EG ++ + K L+ A + I P S E AV+G L F+ SEAI+
Sbjct: 324 EGSITMSNLEDMKKYLNAAYPQEYAQIAPQLKNCSLEKELDTAVQGTGLAFI-VYSEAIK 382
Query: 118 NM 119
NM
Sbjct: 383 NM 384
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.267 0.0887 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,180,936
Number of extensions: 3592392
Number of successful extensions: 3498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3407
Number of HSP's successfully gapped: 148
Length of query: 720
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 616
Effective length of database: 6,324,786
Effective search space: 3896068176
Effective search space used: 3896068176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)