RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15251
(720 letters)
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 948 bits (2453), Expect = 0.0
Identities = 269/713 (37%), Positives = 408/713 (57%), Gaps = 67/713 (9%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+ +L+ANRGEIACR+MR+A+ +GI V+V+SDID A HV AD A L G D+YL
Sbjct: 28 IQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYL 87
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
+I+ A+ S QAIHPGYGFLSENA+FA A E L+F+GP + AI MG KS +K
Sbjct: 88 RGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKA 147
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
+M +A VP++PGYHGE Q+ E +A RIGYP+++KA GGGGKGM++V A L
Sbjct: 148 LMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEAL 207
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
SAQRE+++AF D+++L+EKY+ PRH+E+Q+ DR+G+ +YL ERDCS+QRRHQK++EE
Sbjct: 208 SSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEE 267
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
APAPG+ +E R +G V+ A+A+ Y AGTVEF++D G+F+FMEMNTRLQVEHPV+
Sbjct: 268 APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQFFFMEMNTRLQVEHPVT 326
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
E ITG+DLV WQ+ VA G+ LPL QE + L GH+ E R+YAE+P FLP +G L R
Sbjct: 327 EAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYRE 386
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
R+++GV EGDEVS YDPM++KL+ W E R A ++ L++ + GL TN+
Sbjct: 387 AAAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNL 446
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLKQIQDAKLEKA 487
FL + + F ++ TGFI +H+D+LL E QAA L
Sbjct: 447 AFLRRILGHPAFAAAELDTGFIARHQDDLLPAPQALPEHFWQAAAEAWL----------- 495
Query: 488 KSNGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAKLEKAKSNRNVFSLLTGFRMNHSHV 547
+ + + +S G+R +
Sbjct: 496 -------------------------------QSEPGHRRDDDPHSPWSRNDGWRSALARE 524
Query: 548 KTVQIQHLNKEYNVQVTLSAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGR 607
+ ++ ++ V++ ++ + + + GD +LV+ +
Sbjct: 525 SDLMLRCRDERRCVRLRHASPS-QYRLDGD--------------------DLVSRVDGVT 563
Query: 608 IRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQP 667
RS+ + + + + + ++A + + +PM G + +VLV+P
Sbjct: 564 RRSAALRRGRQLFLEWEGELLAIEAVDP---IAEAEAAHAHQGGLSAPMNGSIVRVLVEP 620
Query: 668 GQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKIVPS 720
GQ V+ G ++V+ AMKME+ I + +G+++ ++ + G+ +++ LV++ +
Sbjct: 621 GQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 920 bits (2379), Expect = 0.0
Identities = 258/733 (35%), Positives = 395/733 (53%), Gaps = 79/733 (10%)
Query: 9 DSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLN 68
+ ILIANRGEIACR+++TA+KMGI V++YSD D ALHV+MADEA + + +Y+
Sbjct: 3 NKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIV 62
Query: 69 QAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEI 128
K++ + QA+HPGYGFLSEN++FA A+E +IFVGP AI MG K TSK+I
Sbjct: 63 IDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKI 122
Query: 129 MIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLR 188
+A V +PGY G ++ + ++ + +IGYP+MIKA GGGGKGMRI + +
Sbjct: 123 AQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQ 182
Query: 189 SAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEA 248
S++ E+ ++F D ++ +EK++ PRHIE+Q++ D +GN +YL ER+CS+QRR+QK++EEA
Sbjct: 183 SSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEA 242
Query: 249 PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSE 308
P+P + R +G V +A+AV Y +AGTVEFI+D FYF+EMNTRLQVEHPV+E
Sbjct: 243 PSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFLEMNTRLQVEHPVTE 301
Query: 309 MITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPP 368
+ITGVDLV+ + VA+G+ L + Q D++L G + E R+YAE+PY GFLP G LT RPP
Sbjct: 302 LITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPP 361
Query: 369 EHS-------------------DTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALN 409
+ +R +TGV EG E+S++YDPMI+KL W R A+
Sbjct: 362 AETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIE 421
Query: 410 KMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLT-RTLPQTEIIL 468
M+ AL +++ G+ N+ FL + + FI GD+ T FI + E LP+T++
Sbjct: 422 AMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPETDLRR 481
Query: 469 QAALSLVLKQIQDAKLEKAKSNGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAKLEKAK 528
AA + + ++ + + + ++G NH + L+
Sbjct: 482 VAAAAAAMHRVAEIRR----------TRVSGRMDNHERRVGTEWVVTLQ----------- 520
Query: 529 SNRNVFSLLTGFRMNHSHVKTVQIQHLNKEYNVQVTLSAHTYRVSIRGDPSSELCIKNAS 588
++ V + VS S + S
Sbjct: 521 ---------------------------GADFPVTIAADHDGSTVSFDDGSSMRV----TS 549
Query: 589 LTQVSKYGYELVAEGEKGRIRSSVVCLDGSVSVFTKTGSYQFNLPGKSY----SLEPEDS 644
L+ +G + V + G + T+ + ++ L PE
Sbjct: 550 DWTPGDQLANLMVDGA--PLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKL 607
Query: 645 ALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704
++ PMPG++ KV V+ GQ V+ G + I AMKME ++ + G++ +I +A
Sbjct: 608 PPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASA 667
Query: 705 GQSIQKNQNLVKI 717
G S+ + +++
Sbjct: 668 GNSLAVDDVIMEF 680
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 791 bits (2046), Expect = 0.0
Identities = 190/511 (37%), Positives = 309/511 (60%), Gaps = 9/511 (1%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
+++LIANRGEIA RIM+T K+MGI+ V+VYSD D + HV AD + L G+++ +TYL
Sbjct: 31 FETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYL 90
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
+ KI++ A ++ QAI PGYGFLSENA+F++ ++FVGPS +AIR +G+K +++E
Sbjct: 91 DIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSARE 150
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
I +A+VP++PG G ++ + E A+++ YP+M+K+ GGGG G++ V +
Sbjct: 151 IAERAKVPLVPG-SGLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVF 209
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
+ Q + +S F D+ V +E+++ + RH+E+Q++GD +G + + ERDCS+QRR+QK+IEE
Sbjct: 210 ETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEE 269
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
PAP + R+++ + ++ ++Y AGTVEFI D EFYF+E+N RLQVEHP++
Sbjct: 270 TPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPIT 329
Query: 308 EMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRP 367
EM+TG+DLV+W L +A+ +++ G S E R+YAENP + F P G LT +
Sbjct: 330 EMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSF 389
Query: 368 PEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNI 427
P R++T V +G VS YDP ++K++V ++R A+ K+ QAL++ + G TNI
Sbjct: 390 PSW---ARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITNI 446
Query: 428 NFLINLCSNDHFIQGDIHTGFIDQHKDELL--TRTLPQTEIILQAALSLVLKQIQDAKLE 485
++L ++ S+ F + + T +D + P +Q
Sbjct: 447 DYLRSIASSKMFKEAKVATKVLDSFDYKPCAFEVLAPGANTSVQDYPGRTGYWRIGVPPS 506
Query: 486 KAKSNGNVFSLLTGFRMNHSHVKTAALSLVL 516
+ +S R+ ++ K+ AL + L
Sbjct: 507 GPMDS---YSFRLANRVVGNNSKSPALEITL 534
Score = 92.0 bits (229), Expect = 3e-19
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 640 EPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEE 699
+ + D + S G K + G V+ GD +++I AMK E V+ + SG + +
Sbjct: 1158 QDVEEYPDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYK 1217
Query: 700 IFYAAGQSIQKNQNLVKIV 718
I + G ++ + IV
Sbjct: 1218 ILHKNGDMVEAGDLVAVIV 1236
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 696 bits (1798), Expect = 0.0
Identities = 200/446 (44%), Positives = 296/446 (66%), Gaps = 3/446 (0%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+L+ANRGEIA RI+R K++GI V++Y+++++ A HVK+ADEAY + G LDTYLN+
Sbjct: 5 VLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMI-GTDPLDTYLNKQ 63
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
+I+++A+ AIHPGYGFL+ENAEFA E + F+GP + I MG K+ SKE+M
Sbjct: 64 RIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMK 123
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
KA VPV+PG G ++ E A IGYP+++KA GGGG+G+RI R+ + A
Sbjct: 124 KAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQA 183
Query: 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250
RE++ AF +LLEK+I++P+HIE Q++GD++GN ++L ERDCS+QRR+QK++E AP+
Sbjct: 184 SREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPS 243
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMI 310
++ E R G+ + A+ + Y+NAGT+EFI D G YF+EMNTR+QVEHPVSEM+
Sbjct: 244 LILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIAD-QEGNLYFIEMNTRIQVEHPVSEMV 302
Query: 311 TGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEH 370
TG+D+V+WQ+ +A+G+ L +KQED++ G++ E RI AE+P + F P + P
Sbjct: 303 TGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPG- 361
Query: 371 SDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFL 430
IR+E G EV+ +YD MI+KL+ W A+ +M+ AL Y+I G+ T I L
Sbjct: 362 GFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTTIPLL 421
Query: 431 INLCSNDHFIQGDIHTGFIDQHKDEL 456
IN+ F G T ++++H +
Sbjct: 422 INIMKEKDFKAGKFTTKYLEEHPEVF 447
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 689 bits (1782), Expect = 0.0
Identities = 213/442 (48%), Positives = 303/442 (68%), Gaps = 1/442 (0%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+LIANRGEIA RI+R + +GI+ V++YS+ D DALH ++ADEAY + S D+YLN
Sbjct: 4 VLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIP 63
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
IL IA + C +HPGYGFL+ENA+FA E +L F+GPS ++I+ MGIK +K MI
Sbjct: 64 NILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMI 123
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
KA VPV+PG G ++ + A++IGYP++IKA GGGGKG+R+ RD R
Sbjct: 124 KANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMT 183
Query: 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250
++E+Q+AF + + +EK+I++ RHIE+QI+GD YGN ++L ERDC++QRR QK++EEAP+
Sbjct: 184 EQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPS 243
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMI 310
P + E R +G+ V+ A+AV Y NAGT+EFI D + +FYFMEMNTR+QVEHPV+EM+
Sbjct: 244 PILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMV 303
Query: 311 TGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEH 370
TG+DLV+ QL VA G LP KQED++L GH+ E RI AENPY+ F+P G + P
Sbjct: 304 TGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGG 363
Query: 371 SDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFL 430
+RIE+ + +YD M++KL++ + R A+ +ALS++ + G+DT I F
Sbjct: 364 YG-VRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTTIPFH 422
Query: 431 INLCSNDHFIQGDIHTGFIDQH 452
I L +ND F G +T F++Q+
Sbjct: 423 IKLLNNDIFRSGKFNTNFLEQN 444
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 677 bits (1750), Expect = 0.0
Identities = 202/442 (45%), Positives = 289/442 (65%), Gaps = 4/442 (0%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
ILIANRGEIA R +RT K+MG + + VYS+ D DAL++K AD + + S ++YLN
Sbjct: 9 ILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIP 68
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMI 130
I+ A ++ AI PGYGFLSEN F + + F+GPS EA+ M KS +K++M
Sbjct: 69 AIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQ 128
Query: 131 KAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSA 190
+A VPVIPG G E + A+ IGYP+++KA GGGG+GMR+V + + SA
Sbjct: 129 RAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSA 188
Query: 191 QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPA 250
+ E+ +AF D + +EKYIQ+PRHIEVQ+IGD +GN +++ ERDCS+QRRHQK+IEE+PA
Sbjct: 189 ESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPA 248
Query: 251 PGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMI 310
+ + R+RL T ++ A+A+ Y AGT EF++D + +FYF+EMNTRLQVEH VSEM+
Sbjct: 249 ILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTRLQVEHCVSEMV 307
Query: 311 TGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEH 370
+G+D+++ + VA G LP QE ++L GHS E RI AE+ + FLP G +T PP
Sbjct: 308 SGIDIIEQMIKVAEGYALP-SQESIKLNGHSIECRITAEDS-KTFLPSPGKITKYIPPA- 364
Query: 371 SDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFL 430
+R+E+ + V +YD MI KLVVW E+R A+ KMK AL + I+G+ T +F
Sbjct: 365 GRNVRMESHCYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISGIKTTKDFH 424
Query: 431 INLCSNDHFIQGDIHTGFIDQH 452
+++ N FI + T ++ +H
Sbjct: 425 LSMMENPDFINNNYDTNYLARH 446
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 681 bits (1759), Expect = 0.0
Identities = 157/512 (30%), Positives = 242/512 (47%), Gaps = 72/512 (14%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIR-----------VVSVYSDIDADALHVKMADEAY 55
V+ ILIAN G A + +R+ +K ++ D++A+A +++MAD+
Sbjct: 46 VISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYI 105
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVE--GNRLIFVGPSS 113
+ G ++ + Y N I+DIA R+ A+ G+G SEN + ++IF+GP
Sbjct: 106 EVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPG 165
Query: 114 EAIRNMGIKSTSKEIMIKAEVPVIPG------------------------YHGEDQNEEI 149
A+R++G K +S + A+VP IP G + E
Sbjct: 166 NAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPED 225
Query: 150 LMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYI 209
+++A+RIG+P+MIKA GGGGKG+R V +F + ++ + S + + K
Sbjct: 226 GLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDF----IALYHQAANEIPGSPIFIMKLA 281
Query: 210 QSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVA 269
RH+EVQ++ D+YG + L+ RDCSVQRRHQKIIEEAP +E + V++
Sbjct: 282 GRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLG 341
Query: 270 RAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELP 329
+ V Y +AGTVE++ G+FYF+E+N RLQVEHP +EM++GV+L QL +A G +
Sbjct: 342 KLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMH 401
Query: 330 -----------------------------LKQEDLQLRGHSFETRIYAENPYEGFLPGAG 360
KQ +GH RI +E+P +GF P G
Sbjct: 402 RISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGG 461
Query: 361 NLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQI 420
L L S + V + D + + ENR + M AL + I
Sbjct: 462 TLHELNFRS-SSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSI 520
Query: 421 AG-LDTNINFLINLCSNDHFIQGDIHTGFIDQ 451
G T + +LI L + F I TG++D
Sbjct: 521 RGDFRTTVEYLIKLLETEDFEDNTITTGWLDD 552
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 673 bits (1740), Expect = 0.0
Identities = 205/446 (45%), Positives = 294/446 (65%), Gaps = 5/446 (1%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+ +YL
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
N I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG K ++
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 121
Query: 128 IMIKAEVPVIPGYHGE-DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQ 186
M KA VP +PG G + + A+RIGYP++IKA GGGG+GMR+VR A
Sbjct: 122 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181
Query: 187 LRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIE 246
+ + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+QRRHQK++E
Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 241
Query: 247 EAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPV 306
EAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNTR+QVEHPV
Sbjct: 242 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 299
Query: 307 SEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLTHLR 366
+EMITGVDL++ QL +A+GQ L +KQE++ +RGH+ E RI AE+P FLP G +T
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFH 358
Query: 367 PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTN 426
P +R E+ + G V +YD MI KL+ + ENR +A+ +MK AL + I G+ TN
Sbjct: 359 APG-GFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTN 417
Query: 427 INFLINLCSNDHFIQGDIHTGFIDQH 452
++ I + ++++F G + ++++
Sbjct: 418 VDLQIRIMNDENFQHGGTNIHYLEKK 443
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 666 bits (1721), Expect = 0.0
Identities = 193/456 (42%), Positives = 281/456 (61%), Gaps = 12/456 (2%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-EGKSSLDTYLNQ 69
+L+ANRGEIA R+ R ++GIR V++YS D + H ADEAY + EGK ++ YL+
Sbjct: 9 VLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDI 68
Query: 70 AKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM 129
I++IA AIHPGYGFLSEN +FA +IF+GP+ + G K ++
Sbjct: 69 EGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAA 128
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
+ A +PVIPG G E ++ AE GYP++IKA GGGG+GMRIVR +
Sbjct: 129 VNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFER 188
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
A+ E+++AF +V +EK I++P+HIEVQI+GD GN V+LYERDCSVQRRHQK++E AP
Sbjct: 189 AKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAP 248
Query: 250 APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEM 309
+ +S E R R+ VQ+ R+V Y NAGTVEF++ EFYF+E+N R+QVEH ++EM
Sbjct: 249 SVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--DEFYFIEVNPRIQVEHTITEM 306
Query: 310 ITGVDLVQWQLMVASGQELPL------KQEDLQLRGHSFETRIYAENPYEGFLPGAGNLT 363
ITG+D+VQ Q+++A G L KQED+++ G++ ++R+ E+P F+P G +
Sbjct: 307 ITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIM 366
Query: 364 HLRPPEHSDTIRIETGVI-EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422
R +R++ G +G ++ +YD ++ KL W A KM + L +++I G
Sbjct: 367 AYRSGG-GFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIRG 425
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLT 458
+ TNI FL N+ + F+ G+ T FID EL
Sbjct: 426 IKTNIPFLENVVQHPKFLSGEYDTSFIDTTP-ELFV 460
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 655 bits (1692), Expect = 0.0
Identities = 174/538 (32%), Positives = 250/538 (46%), Gaps = 67/538 (12%)
Query: 7 VLDSILIANRGEIACRIMRTAKK---------MGIRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 55 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 114
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N I+DIA R QA+ G+G SEN + + N + F+GP SEA
Sbjct: 115 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 174
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPGY---------------------------HGEDQNEE 148
+ +G K S + +VP +P G ++ +
Sbjct: 175 MWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVD 234
Query: 149 ILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKY 208
+E AERIG+PLMIKA GGGGKG+R + +F R Q E S + L K
Sbjct: 235 EGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMKL 290
Query: 209 IQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQV 268
Q RH+EVQI+ D+YGN V L+ RDCS+QRRHQKI+EEAPA + +++
Sbjct: 291 AQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRL 350
Query: 269 ARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQEL 328
A+ V Y +AGTVE++ G F+F+E+N RLQVEHP +EMI V+L QL +A G L
Sbjct: 351 AKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPL 409
Query: 329 PLKQEDLQL----------------------RGHSFETRIYAENPYEGFLPGAGNLTHLR 366
++ L RGH RI +ENP EGF P +G + L
Sbjct: 410 HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 469
Query: 367 PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG-LDT 425
S + V + D W ENR A++ M AL + I G T
Sbjct: 470 FRS-SKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRT 528
Query: 426 NINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQTEIILQAALSLVLKQIQDAK 483
+ +LINL + F DI TG++D E + P + + +
Sbjct: 529 TVEYLINLLETESFQNNDIDTGWLDYLIAEKVQAEKPDIMLGVLEHHHHHHLEHHHHH 586
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 648 bits (1674), Expect = 0.0
Identities = 172/506 (33%), Positives = 244/506 (48%), Gaps = 67/506 (13%)
Query: 7 VLDSILIANRGEIACRIMRTAKK---------MGIRVVSVYS--DIDADALHVKMADEAY 55
V++ +LIAN G A + MR+ ++ IR V + + D+ A+A ++KMAD
Sbjct: 39 VIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYV 98
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEA 115
+ G + + Y N I+DIA R QA+ G+G SEN + + N + F+GP SEA
Sbjct: 99 PVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEA 158
Query: 116 IRNMGIKSTSKEIMIKAEVPVIPGY---------------------------HGEDQNEE 148
+ +G K S + +VP +P G ++ +
Sbjct: 159 MWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVD 218
Query: 149 ILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKY 208
+E AERIG+PLMIKA GGGGKG+R + +F R Q E S + L K
Sbjct: 219 EGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMKL 274
Query: 209 IQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQV 268
Q RH+EVQI+ D+YGN V L+ RDCS+QRRHQKI+EEAPA + +++
Sbjct: 275 AQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRL 334
Query: 269 ARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQEL 328
A+ V Y +AGTVE++ G F+F+E+N RLQVEHP +EMI V+L QL +A G L
Sbjct: 335 AKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPL 393
Query: 329 PLKQEDLQL----------------------RGHSFETRIYAENPYEGFLPGAGNLTHLR 366
++ L RGH RI +ENP EGF P +G + L
Sbjct: 394 HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 453
Query: 367 PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG-LDT 425
S + V + D W ENR A++ M AL + I G T
Sbjct: 454 FRS-SKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRT 512
Query: 426 NINFLINLCSNDHFIQGDIHTGFIDQ 451
+ +LINL + F DI TG++D
Sbjct: 513 TVEYLINLLETESFQNNDIDTGWLDY 538
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 667 bits (1724), Expect = 0.0
Identities = 178/467 (38%), Positives = 283/467 (60%), Gaps = 16/467 (3%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAY-------RLEGKSSL 63
IL+ANR EIA R+ R A ++GI+ V+++++ D ALH ADE+Y +
Sbjct: 17 ILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPI 76
Query: 64 DTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKS 123
++YL+ +++ +A S AIHPGYG LSE+ EF +A +IF+GP ++ +R +G K
Sbjct: 77 ESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKV 136
Query: 124 TSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANF 183
++ + I VPV+P + + + A IGYP+M+KA GGGG+GMR++R A+
Sbjct: 137 AARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADL 196
Query: 184 LAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQK 243
++ A+RE+ +AF +V LEK ++ RH+E QI+GD +GN V+L+ERDCSVQRR+QK
Sbjct: 197 AKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQK 256
Query: 244 IIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVE 303
++E APAP +S R L + +++A A Y AGTVE++MD +G+FYF+E+N R+QVE
Sbjct: 257 VVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVE 316
Query: 304 HPVSEMITGVDLVQWQLMVASGQELPL------KQEDLQLRGHSFETRIYAENPYEGFLP 357
H V+E++TG+D+V+ Q+ + G + QED++L GH+ + R+ E+P F+P
Sbjct: 317 HTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIP 376
Query: 358 GAGNLTHLRPPEHSDTIRIETGVI-EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALS 416
G +T R IR++ G G ++ +YDP++ K+ W N A+++M +AL
Sbjct: 377 DYGRITAYRSAS-GFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALR 435
Query: 417 QYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQ 463
+++I G+ TN+ FL + + F T FID EL + Q
Sbjct: 436 EFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTP-ELFQQVKRQ 481
Score = 87.0 bits (216), Expect = 9e-18
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+ + V +PMPG++ +V V GQAV GD ++ I AMKME I + G I E+ AG
Sbjct: 1093 GNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD 1152
Query: 707 SIQKNQNLVKI 717
I L
Sbjct: 1153 QIDAKDLLAVY 1163
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 657 bits (1697), Expect = 0.0
Identities = 192/461 (41%), Positives = 288/461 (62%), Gaps = 12/461 (2%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRL-EGKSSLDTYLNQ 69
+L+ANRGEIA RI R A ++ I V++YS+ D +LH ADE+Y + ++YLN
Sbjct: 7 LLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNI 66
Query: 70 AKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM 129
+I+D+A ++ AIHPGYGFLSEN +FA + F+GP E + G K ++
Sbjct: 67 ERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTA 126
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
IKA++PVIPG G ++ E+ E AE G+PLMIKA GGGGKGMRIVR+ +
Sbjct: 127 IKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHR 186
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
A+ E++ +F +S+V +E+YI +P+HIEVQ+IGD +GN V+L+ERDCSVQRRHQK++E AP
Sbjct: 187 AKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAP 246
Query: 250 APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEM 309
+ G+S R R+ +Q+ ++Y NAGTVEF++ EF+F+E+N R+QVEH ++EM
Sbjct: 247 SVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSG--DEFFFIEVNPRVQVEHTITEM 304
Query: 310 ITGVDLVQWQLMVASGQELP------LKQEDLQLRGHSFETRIYAENPYEGFLPGAGNLT 363
+TG+D+V+ Q++VA+G +L +Q+D+ G++ + RI E+P F+P G +
Sbjct: 305 VTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTII 364
Query: 364 HLRPPEHSDTIRIETGVI-EGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAG 422
R +R++ G +G E+S +YD ++ KL + A KM ++L + +I G
Sbjct: 365 AYRSSG-GFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRG 423
Query: 423 LDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQ 463
+ TNI FLIN+ N F GD T FI++ EL
Sbjct: 424 VKTNIPFLINVMKNKKFTSGDYTTKFIEETP-ELFDIQPSL 463
Score = 91.6 bits (228), Expect = 3e-19
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
S+PS + + MPG V +V V G+ VK P+++ AMKME I + G+I+++ G
Sbjct: 1075 SNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1134
Query: 707 SIQKNQNLVKIVPS 720
+I L++I +
Sbjct: 1135 TIATGDLLIEIEKA 1148
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 158 bits (402), Expect = 5e-46
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 115 AIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGM 174
+ + G K SK + KAEV IPG+ G ++ E + A IGYP+MIKA GGGGKGM
Sbjct: 2 SSGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGM 61
Query: 175 RIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIG 221
RI D R + +E+ S+F D ++L+EK+I +PRHI G
Sbjct: 62 RIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 117 bits (296), Expect = 1e-28
Identities = 67/425 (15%), Positives = 143/425 (33%), Gaps = 51/425 (12%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
IL A RG++ + AK++GI + + +A + +ADE ++ N
Sbjct: 12 ILGAGRGQLGL--YKAAKELGIHTI-AGTMPNAHKPCLNLADEISYMD-------ISNPD 61
Query: 71 KILDIAVRSQCQA-IHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIM 129
++ + A ++ VG + EA G K KE
Sbjct: 62 EVEQKVKDLNLDGAATCCLDTGIVSL----ARICDKENLVGLNEEAAIMCGDKYKMKEAF 117
Query: 130 IKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRS 189
K V + ++NE L E + P+++KA G KG+ I + +
Sbjct: 118 KKYNVNTARHFVVRNENE--LKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNE 175
Query: 190 AQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAP 249
++ ++E++I+ Q + + +++ H +
Sbjct: 176 TMNLTKR----DYCIVEEFIEGY-EFGAQAFVYK-NDVLFVMP--------HGDETYMSH 221
Query: 250 APG---------ISSEFRSRLGSTGVQVARAVRYHN-AGTVEFIMDPSSGEFYFMEMNTR 299
+ + + + + +A+ +N A V+ I+ E Y +E+ R
Sbjct: 222 TAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKD--NEVYIIELTGR 279
Query: 300 LQ--VEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLP 357
+ + E+ G++ + +A + + + R+ E G L
Sbjct: 280 VGANCLPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMIIETEKSGILK 339
Query: 358 GAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPM--ISKLVVWDENRTLALNKMKQAL 415
N + D + I E DE+ + I +++V +E +K+ +
Sbjct: 340 EILN----SNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVII 395
Query: 416 SQYQI 420
+ I
Sbjct: 396 NNINI 400
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 108 bits (271), Expect = 6e-26
Identities = 47/327 (14%), Positives = 90/327 (27%), Gaps = 31/327 (9%)
Query: 11 ILI--ANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLN 68
+LI A R K RV + D A + MAD+ Y + K Y++
Sbjct: 7 LLITSAGRRAKLVEYFVKEFK-TGRVSTA--DCSPLASALYMADQHY-IVPKIDEVEYID 62
Query: 69 QAKILDIAVRSQCQAIHPGYGF-LSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKE 127
+L + A+ L A+ + + + A K T E
Sbjct: 63 --HLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYE 120
Query: 128 IMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQL 187
++ + Y EE A + P+ +K G +R V
Sbjct: 121 YCLRQGIAHARTYATMASFEEA--LAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLF 178
Query: 188 RSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEE 247
++ +++++ + + V D V S+ + + +
Sbjct: 179 S----------KNTDLIVQELLVGQ-ELGVDAYVDLISGKVT------SIFIKEKLTMRA 221
Query: 248 APAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVS 307
S R + V + +G Y E+N R +P +
Sbjct: 222 GETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLSEINPRFGGGYPHA 279
Query: 308 EMITGVDLVQWQLMVASGQELPLKQED 334
GV+ + +
Sbjct: 280 YE-CGVNFPAQLYRNLMHEINVPQIGQ 305
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 108 bits (272), Expect = 3e-25
Identities = 60/432 (13%), Positives = 115/432 (26%), Gaps = 59/432 (13%)
Query: 26 TAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85
K D + D Y + +I+ +A AI
Sbjct: 57 VIKDKDYFKSLA--DFE-------HPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAIT 107
Query: 86 PGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQ 145
A A E L G +A N K+ ++ KA V I
Sbjct: 108 TNNELFIAPM--AKACERLGL--RGAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTL 163
Query: 146 NEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFN------ 199
+ E IG PL++K G+ ++ D+ + +S
Sbjct: 164 ED--FRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTF 221
Query: 200 DSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII---EEAPAPG---- 252
++ + E+++Q + Y + + I ++ P G
Sbjct: 222 EAPFIAEEFLQGEYGDW-----YQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTET 276
Query: 253 -------ISSEFRSRLGSTGVQVARAVRYHNAGT-VEFIMDPSSGEFYFMEMNTRLQVEH 304
+ E + ++ + + N T E + + E +E R
Sbjct: 277 SHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARF-AGW 334
Query: 305 PVSEMI---TGVDLVQWQLMVASGQE---LPLKQEDLQLRGHSFETRIYAENPYEGFLPG 358
+ I G+D+ Q L V + LP D + + G +P
Sbjct: 335 NMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEPYYVADCHLYPQHFKQNGQIPE 394
Query: 359 AGNLTHLRPPEHSDTIRIETGVIE-------GDEVSV---HYDPMISKLVVWDENRTLAL 408
+ + D + I G V + I+ + N
Sbjct: 395 TAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFELKGSNSQDVA 454
Query: 409 NKMKQALSQYQI 420
++Q ++
Sbjct: 455 ESIRQIQQHAKL 466
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 95.6 bits (238), Expect = 7e-24
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 644 SALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703
S+ ++PM G ++KV V+ G VK GD +MV+IAMKME+ I S G ++++FY
Sbjct: 9 SSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYR 68
Query: 704 AGQSIQKNQNLVKIVP 719
G ++ LV+
Sbjct: 69 EGAQANRHTPLVEFEE 84
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 93.8 bits (234), Expect = 1e-23
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 644 SALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYA 703
+ + ++ +P+ G V K+LV+ G VK G ++V+ AMKME I + T G +E++
Sbjct: 3 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62
Query: 704 AGQSIQKNQNLVKI 717
++Q Q L+KI
Sbjct: 63 ERDAVQGGQGLIKI 76
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 90.4 bits (225), Expect = 2e-22
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 649 PSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSI 708
+ V +PMPG V +VLV+ G V+ G ++V+ AMKME I S G+++ I G+++
Sbjct: 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAV 64
Query: 709 QKNQNLVKI 717
Q L+++
Sbjct: 65 DTGQPLIEL 73
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 89.0 bits (221), Expect = 1e-21
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 638 SLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGII 697
E S + SPMPG+V V V+PG AV G I VI AMKM+ +T+G +G +
Sbjct: 14 GTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTV 73
Query: 698 EEIFYAAGQSIQKNQNLVKI 717
+ + AG ++ + LV++
Sbjct: 74 KSVHCQAGDTVGEGDLLVEL 93
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 86.5 bits (215), Expect = 5e-21
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKN 711
V M G + KV V+ G ++ G + ++ +MKME I + SGI++E+ G + +
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEG 61
Query: 712 QNLVKIVPS 720
L+++ S
Sbjct: 62 DVLLELSNS 70
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 89.7 bits (223), Expect = 1e-18
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 594 KYGYELVAEGEKGRIRSSVVCLDGSVSVFTKTG--SYQFNLPGKSYSLEPEDSAL----- 646
K E E E+G+ + + VS + G F L G+ S+ +D+
Sbjct: 583 KIAEEFEVELERGK--TLHIKALA-VSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEMH 639
Query: 647 -------SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEE 699
++ +PMPG V + V G V G P+ V+ AMKME V+TS G + +
Sbjct: 640 FHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRK 699
Query: 700 IFYAAGQSIQKNQNLVKI 717
+ +++ + +++I
Sbjct: 700 VHVTKDMTLEGDDLILEI 717
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 77.0 bits (190), Expect = 2e-17
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+DP+ + SP G + + V+ G V+ G + MKM + G ++ I G
Sbjct: 3 NDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGA 61
Query: 707 SIQKNQNLVKI 717
++ + ++
Sbjct: 62 VLEAGCVVARL 72
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 74.8 bits (184), Expect = 1e-16
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 634 GKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGT 693
+ E E +DP+ + SP G + + V+ G V+ G + MKM +
Sbjct: 6 SGTCVFEKE----NDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQE 61
Query: 694 SGIIEEIFYAAGQSIQKNQNLVKIVP 719
G ++ I G ++ + ++
Sbjct: 62 RGRVKYIK-RPGAVLEAGCVVARLEL 86
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 79.9 bits (198), Expect = 2e-16
Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 30/191 (15%)
Query: 122 KSTSKEIMIKAEVPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K +K + + VP P D + ++G PL +K G + V+
Sbjct: 108 KFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKT 167
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR----------YGNYVY 229
+ A L A +D V++EK I+ I GD Y Y
Sbjct: 168 ADALPAALSEAAT------HDKIVIVEKSIEGGGEYTACIAGDLDLPLIKIVPAGEFYDY 221
Query: 230 L--YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPS 287
Y + + ++ +I P + +E + L + + + G +F++D +
Sbjct: 222 HAKYVANDT---QY--LI---PCG-LPAEQETELKRIARRAFDVLGCTDWGRADFMLDAA 272
Query: 288 SGEFYFMEMNT 298
G YF+E+NT
Sbjct: 273 -GNAYFLEVNT 282
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 72.9 bits (180), Expect = 4e-14
Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 32/189 (16%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K+ SK+I+ + P + + E++ ++ +++G+PL++K GG G++IV D
Sbjct: 98 KNISKKILRYEGIET-PDWIELTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKD 156
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR----------YGNYVYL- 230
++ L + DS+V++EKYI+ I I + + Y
Sbjct: 157 ELISMLETVFEW------DSEVVIEKYIKG-EEITCSIFDGKQLPIISIRHAAEFFDYNA 209
Query: 231 -YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSG 289
Y+ + E + +E + R+ + +A++ V+ ++ G
Sbjct: 210 KYDDAST---------IEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMMVK--DG 257
Query: 290 EFYFMEMNT 298
Y ME+NT
Sbjct: 258 IPYVMEVNT 266
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 73.1 bits (180), Expect = 6e-14
Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 23/192 (11%)
Query: 122 KSTSKEIMIKAEVPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K+ +KE++ + E N + +G + +KA G G+ V +
Sbjct: 136 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN 195
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQR 239
+ + L + + D KVL+E+ + R +EV +IG+ + Q
Sbjct: 196 AEEYTEALSDSFQ------YDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQG 249
Query: 240 R-------HQKIIEEA------PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDP 286
+ K ++ + PA +S E + + + + ++F++D
Sbjct: 250 SGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE 308
Query: 287 SSGEFYFMEMNT 298
+ Y E NT
Sbjct: 309 -NNVPYLGEPNT 319
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 70.2 bits (173), Expect = 3e-13
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 34/194 (17%)
Query: 122 KSTSKEIMIKAEVPV-----IPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI 176
K SK + A +PV + E + + + +G P+++K R G GM
Sbjct: 97 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 156
Query: 177 VRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR----------YGN 226
V LR A + +D +VL+EK++ V I+G+
Sbjct: 157 VVAENALQDALRLAFQ------HDEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSGTF 209
Query: 227 YVYL--YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIM 284
Y Y + D + ++ PA + + + L + ++ + G ++ ++
Sbjct: 210 YDYEAKFLSDET---QY--FC---PAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVML 260
Query: 285 DPSSGEFYFMEMNT 298
D G+FY +E NT
Sbjct: 261 DS-DGQFYLLEANT 273
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 69.9 bits (172), Expect = 5e-13
Identities = 34/195 (17%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
KS + + A + + + + A YP+ +K R G G++ V +
Sbjct: 133 KSLTYIVAKNAGIATPAFWVINKDDRPV----AATFTYPVFVKPARSGSSFGVKKVNSAD 188
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYV------------Y 229
+ SA++ DSK+L+E+ + S + ++G+ V +
Sbjct: 189 ELDYAIESARQY------DSKILIEQAV-SGCEVGCAVLGNSAALVVGEVDQIRLQYGIF 241
Query: 230 LYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV------RYHNAGTVEFI 283
++ ++ + + PA +S+E R R+ T ++ + + R V+
Sbjct: 242 RIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCRGLAR------VDMF 294
Query: 284 MDPSSGEFYFMEMNT 298
+ +G E+NT
Sbjct: 295 LQD-NGRIVLNEVNT 308
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 68.4 bits (168), Expect = 1e-12
Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 43/195 (22%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K SK ++ +A VPV+P + + E P +K G G+ V
Sbjct: 119 KDLSKRVLAQAGVPVVP-WVAVRKGEPP----VVPFDPPFFVKPANTGSSVGISRVERFQ 173
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY-------------GNYV 228
+ A L A R D K ++EK + R +EV ++G+ + Y
Sbjct: 174 DLEAALALAFRY------DEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYD 227
Query: 229 YLYERDCSVQRRHQKIIEEA-----PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFI 283
Y K PAP + + + ++ + + V+F
Sbjct: 228 Y-----------ETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFF 275
Query: 284 MDPSSGEFYFMEMNT 298
+ GE Y E+NT
Sbjct: 276 LA--EGELYLNELNT 288
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 67.3 bits (165), Expect = 5e-12
Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 35/193 (18%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K +K + + Y ++ +P ++K G G+ +V++
Sbjct: 150 KYLTKLYAKDLGIKTLD-YVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVKEEK 208
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYV-----------YL 230
+ L SA +VL+E +IQ + + +
Sbjct: 209 ELIYALDSAFEY------SKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFLD 262
Query: 231 YERDCSVQRRHQKIIEEA-----PAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMD 285
++ QK ++ + A +S+ +L ++ + +F +
Sbjct: 263 FK---------QKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI 312
Query: 286 PSSGEFYFMEMNT 298
E Y E+N
Sbjct: 313 --ENEVYLNEINP 323
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas
oryzae PV} PDB: 3r5f_A* 3rfc_A*
Length = 386
Score = 66.5 bits (163), Expect = 8e-12
Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 33/194 (17%)
Query: 122 KSTSKEIMIKAEVPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K +K ++ A + V P + + ++G PL +K G G+ VR
Sbjct: 160 KDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRT 219
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY-------------GN 226
+ F A L A D KVL+E + + R IE ++G+
Sbjct: 220 ADAFAAALALALAY------DHKVLVEAAV-AGREIECAVLGNAVPHASVCGEVVVHDAF 272
Query: 227 YVYL--YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIM 284
Y Y Y + + +I PA I ++ + R+ VQ +A+ V+ +
Sbjct: 273 YSYATKYISEHGAEI----VI---PAD-IDAQTQQRIQQIAVQAYQALGCAGMARVDVFL 324
Query: 285 DPSSGEFYFMEMNT 298
G E+NT
Sbjct: 325 CA-DGRIVINEVNT 337
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP
binding protein, csgid, A binding, cell shape; HET: ADP;
2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Length = 364
Score = 66.1 bits (162), Expect = 1e-11
Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 49/202 (24%)
Query: 122 KSTSKEIMIKAEVPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K +K ++ A + + P +++ E R+G PL +K G G+ V +
Sbjct: 141 KDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVAN 200
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD-----------RYGNYV 228
A + + A D KV++E+ I R IE ++G+ +
Sbjct: 201 EAQYQQAVALAFEF------DHKVVVEQGI-KGREIECAVLGNDNPQASTCGEIVLNSEF 253
Query: 229 YLYERDCSVQRRHQKIIEEA------PAPGISSEFRSRLGSTGVQVARAV------RYHN 276
Y Y+ K I++ PA I SE ++ + +Q + + R
Sbjct: 254 YAYD---------TKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMAR--- 300
Query: 277 AGTVEFIMDPSSGEFYFMEMNT 298
V+ + E E+NT
Sbjct: 301 ---VDVFLTA-DNEVVINEINT 318
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 65.3 bits (160), Expect = 2e-11
Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 43/198 (21%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
KS + + A + + + +++ YP+ +K R G G+ V
Sbjct: 133 KSLTYLVARSAGIATPNFWTVTADEKIP----TDQLTYPVFVKPARSGSSFGVSKVAREE 188
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYV------------Y 229
+ + +A+ DSKVL+E+ + I ++G+ +
Sbjct: 189 DLQGAVEAAREY------DSKVLIEEAV-IGTEIGCAVMGNGPELITGEVDQITLSHGFF 241
Query: 230 LYE---RDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV------RYHNAGTV 280
S + PA IS+ RS + T V RA+ R V
Sbjct: 242 KIHQESTPESGSDNSAVTV---PAD-ISTTSRSLVQDTAKAVYRALGCRGLSR------V 291
Query: 281 EFIMDPSSGEFYFMEMNT 298
+ + G+ E+NT
Sbjct: 292 DLFLTE-DGKVVLNEVNT 308
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 64.9 bits (159), Expect = 3e-11
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 27/189 (14%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
+++G+ V++V DA A+HV A ++ + L+ + + + I P
Sbjct: 30 CQRLGVEVIAVDRYADAPAMHV--AHRSHVIN-------MLDGDALRRVVELEKPHYIVP 80
Query: 87 GYGFLSEN--AEFANAVEGNRLIFVGPSSEAIR----NMGIKSTSKEIMIKAEVPVIPGY 140
E + +E + V P + A + GI+ + + ++P Y
Sbjct: 81 ----EIEAIATDMLIQLE-EEGLNVVPCARATKLTMNREGIR---RLAAEELQLPTST-Y 131
Query: 141 HGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFND 200
D E IGYP ++K V GKG +R + + AQ+ +
Sbjct: 132 RFADSESL-FREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGR--AGA 188
Query: 201 SKVLLEKYI 209
+V++E +
Sbjct: 189 GRVIVEGVV 197
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 64.6 bits (158), Expect = 3e-11
Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 47/201 (23%)
Query: 122 KSTSKEIMIKAE-VPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
K T+ +++ A +P + + E L E E++ YP+ +K G G+
Sbjct: 162 KITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAE 221
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY-------------G 225
+ + + A + DS+VL+E+ + R IEV I+G+
Sbjct: 222 NRTDLKQAIALALK------YDSRVLIEQGV-DAREIEVGILGNTDVKTTLPGEIVKDVA 274
Query: 226 NYVYL--YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV------RYHNA 277
Y Y Y + I PA I ++ R + R
Sbjct: 275 FYDYEAKYIDNKI-----TMAI---PAE-IDPVIVEKMRDYAATAFRTLGCCGLSR---- 321
Query: 278 GTVEFIMDPSSGEFYFMEMNT 298
+F + G+ Y E+NT
Sbjct: 322 --CDFFLTE-DGKVYLNELNT 339
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 64.1 bits (157), Expect = 5e-11
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 49/203 (24%)
Query: 122 KSTSKEIMIKAEVPVIPG-----YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI 176
K K++ +P +P E IL +++ YP+ +K G G+
Sbjct: 130 KLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISK 189
Query: 177 VRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY------------ 224
+ A ++ A + D K+++E+ + + R IEV ++G+ Y
Sbjct: 190 CNNEAELKEGIKEAFQF------DRKLVIEQGV-NAREIEVAVLGNDYPEATWPGEVVKD 242
Query: 225 -GNYVYL--YERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV------RYH 275
Y Y Y+ Q I PA + + + L + ++ +A R
Sbjct: 243 VAFYDYKSKYKDGKV-----QLQI---PAD-LDEDVQLTLRNMALEAFKATDCSGLVR-- 291
Query: 276 NAGTVEFIMDPSSGEFYFMEMNT 298
+F + + Y E N
Sbjct: 292 ----ADFFVTE-DNQIYINETNA 309
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella
burnetii}
Length = 372
Score = 62.6 bits (153), Expect = 1e-10
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 44/200 (22%)
Query: 122 KSTSKEIMIKAEVPVIPG---YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVR 178
K +K ++ +PV+ + L +KAV G V+
Sbjct: 141 KDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVK 200
Query: 179 DSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD-----------RYGNY 227
F ++ R D ++++E I R IE ++G+ +
Sbjct: 201 TETEFTKAVKEVFRY------DDRLMVEPRI-RGREIECAVLGNGAPKASLPGEIIPHHD 253
Query: 228 VYLYE---RDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAV------RYHNAG 278
Y Y+ D + +S ++ + + V R
Sbjct: 254 YYSYDAKYLDPN------GATTTTSVD-LSESVTKQIQQIAIDAFKMVHCSGMAR----- 301
Query: 279 TVEFIMDPSSGEFYFMEMNT 298
V+F + P + + E+NT
Sbjct: 302 -VDFFVTP-NNKVLVNEINT 319
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 62.3 bits (152), Expect = 2e-10
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
A+++G+ VV+V +A A+ V A +Y +++ + + R + AI P
Sbjct: 38 AQRLGVEVVAVDRYANAPAMQV--AHRSYVGN-------MMDKDFLWSVVEREKPDAIIP 88
Query: 87 GYGFLSE----NAEFANAVEGNRLIFVGPSSEAIR----NMGIKSTSKEIMIKAEVPVIP 138
E N + E FV P++ A ++ + ++ +A+VP
Sbjct: 89 ------EIEAINLDALFEFE-KDGYFVVPNARATWIAMHRERLR---ETLVKEAKVPTSR 138
Query: 139 GYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF 198
Y +E L E E+IGYP KA+ GKG V+ + A+ +++
Sbjct: 139 -YMYATTLDE-LYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAK--TKARG 194
Query: 199 NDSKVLLEKYI 209
+ K+++E++I
Sbjct: 195 SAEKIIVEEHI 205
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 60.0 bits (146), Expect = 1e-09
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K +K+++ +PV + ++ ER+G P+ +K RGG G+ V
Sbjct: 152 KEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWD 211
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGN 226
A + A+R D KV++E I S R +E ++ G
Sbjct: 212 QLPAAVARARRH------DPKVIVEAAI-SGRELECGVLEMPDGT 249
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 58.6 bits (141), Expect = 2e-09
Identities = 42/316 (13%), Positives = 81/316 (25%), Gaps = 50/316 (15%)
Query: 17 GEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIA 76
I M + + V+ S+D+ + D
Sbjct: 14 ERIEDSTAVEGLAMFKSAFDGFKNYYEITGFVRPEFSCLFTLPVDSMDSMEKYLEKSDAF 73
Query: 77 VRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPV 136
+ I P FL +G SS AI K + + + EV V
Sbjct: 74 L-----IIAPEDDFLLYTLTKKAEKYC---ENLGSSSRAIAVTSDKWELYKKL-RGEVQV 124
Query: 137 IPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQS 196
+ +IK G+G+ +
Sbjct: 125 PQTS-------------LRPLDCKFIIKPRTACAGEGIGFSDEV---------------- 155
Query: 197 AFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSE 256
+ +++I+ ++ V + + + E+ + R ++ PA IS E
Sbjct: 156 ---PDGHIAQEFIEG-INLSVSLAVGEDVKCLSVNEQIINNFRYAGAVV---PAR-ISDE 207
Query: 257 FRSRLGSTGVQVARAVRYHN-AGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDL 315
+ + V+ V N V+ + + Y +E+N RL G +
Sbjct: 208 VKREVVEEAVRAVECVEGLNGYVGVDIVYS---DQPYVIEINARLTTPVVAFSRAYGASV 264
Query: 316 VQWQLMVASGQELPLK 331
Sbjct: 265 ADLLAGGEVKHVRRQM 280
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 2e-09
Identities = 63/481 (13%), Positives = 131/481 (27%), Gaps = 174/481 (36%)
Query: 10 SILIANRGEIACRIMRTAKKMGIRV--VSV----------------YSDIDADALHVKMA 51
+ + + C + KM ++ +++ ID +
Sbjct: 164 TWVALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 52 DEAYRL---EGKSSLDTYLNQAK------ILDIAVRS---------QCQAIHPGYGFLSE 93
+L ++ L L +L V++ C+ + +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKIL-----LTTR 273
Query: 94 NAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQ 153
+ + + + S + K +++K + D + L +
Sbjct: 274 FKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLK----YL------DCRPQDLPRE 321
Query: 154 AERIGYPL---MIKA-VRGG----------GGKGMRIVRDSANFLAQLRSAQRESQSAF- 198
P +I +R G + + +S L L A E + F
Sbjct: 322 VLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPA--EYRKMFD 376
Query: 199 ------NDSKV---LLEKYIQSPRHIEVQII-----------GDRYGNYVYLYERDCSVQ 238
+ + LL +V ++ + + + ++
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 239 RR-------HQKIIE-----------EAPAPGISSEFRSRLGSTGVQVARAVRYH--NAG 278
+ H+ I++ + P + F S +G +H N
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----------HHLKNIE 485
Query: 279 TVE----F---IMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLK 331
E F +D F F+E ++ H D W ASG L
Sbjct: 486 HPERMTLFRMVFLD-----FRFLEQ----KIRH---------DSTAWN---ASGSILNTL 524
Query: 332 QEDLQL-RGH------SFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRI----ETGV 380
Q L+ + + +E + A FLP +L +++D +RI E
Sbjct: 525 Q-QLKFYKPYICDNDPKYERLVNA---ILDFLPKIE--ENLICSKYTDLLRIALMAEDEA 578
Query: 381 I 381
I
Sbjct: 579 I 579
Score = 54.9 bits (131), Expect = 9e-08
Identities = 60/384 (15%), Positives = 119/384 (30%), Gaps = 109/384 (28%)
Query: 370 HSDTIRIETGVIE---GDEVSVHYDPMISKLVVWD-----------------------EN 403
H D ETG + D +SV D + D +
Sbjct: 6 HMDF---ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 404 RTLAL-----NKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDELLT 458
TL L +K ++ + ++ L N FL++ + + +I+Q D L
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYN 121
Query: 459 -------RTLPQTEIILQAALSLVLKQIQDAKLEKAKSNGNVFSLLTGFRMNHSHVKTAA 511
+ + + L+ L+Q L + + NV + G + S KT
Sbjct: 122 DNQVFAKYNVSRLQPYLK------LRQ----ALLELRPAKNVL--IDG--VLGSG-KT-- 164
Query: 512 LSLVLKQIQDAKLEKAKSNRNVFSLLTGFRMNHSHVKTVQIQHLNKEYNVQVTLSAHTYR 571
+ L K++ +F L + + + ++ L K Q+ + +
Sbjct: 165 -WVALDVCLSYKVQCKMDF-KIFWL----NLKNCNSPETVLEMLQKLL-YQIDPNWTS-- 215
Query: 572 VSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGRIRSSVVCLD-----GSVSVF---- 622
R D SS + ++ S+ + L+ K +V L + + F
Sbjct: 216 ---RSDHSSNIKLRIHSIQAELR---RLLK--SKPYENCLLV-LLNVQNAKAWNAFNLSC 266
Query: 623 -----TKTGSYQFNLPGKSY---SLEPEDSALSDP------SKVVSPMPGMVDKVLVQPG 668
T+ L + SL+ L+ K + + L P
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQDL--PR 320
Query: 669 QAVKTGDP--IMVIIAMKMEYVIT 690
+ + +P + +I + + T
Sbjct: 321 EVLT-TNPRRLSIIAESIRDGLAT 343
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 55.9 bits (135), Expect = 1e-08
Identities = 51/294 (17%), Positives = 90/294 (30%), Gaps = 43/294 (14%)
Query: 22 RIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQC 81
+ A+ +G+ + AL + + + LEG +
Sbjct: 15 MLFERAEALGLPYKK----VYVPALPMVLGERPKELEG-------------VT------- 50
Query: 82 QAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYH 141
S A + I V E I G K + + KA +P
Sbjct: 51 -VALERCVSQSRGLAAARYLTALG-IPVVNRPEVIEACGDKWATSVALAKAGLPQPKTAL 108
Query: 142 GEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDS 201
D E + E GYP+++K V G G+ + +E F
Sbjct: 109 ATD--REEALRLMEAFGYPVVLKPVIGSWGRL--LAXXXXXXXXXXXXXXKEVLGGFQHQ 164
Query: 202 KVLLEKYIQSP-RHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSR 260
+++Y++ P R I V ++G+R + R + H +
Sbjct: 165 LFYIQEYVEKPGRDIRVFVVGER---AIAAIYR----RSAHWITNTARGGQAENCPLTEE 217
Query: 261 LGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVD 314
+ V+ A AV V+ E+N ++ ++ S TGVD
Sbjct: 218 VARLSVKAAEAVGGGVVA-VDLFESE--RGLLVNEVNHTMEFKN--SVHTTGVD 266
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 56.1 bits (136), Expect = 2e-08
Identities = 50/262 (19%), Positives = 87/262 (33%), Gaps = 35/262 (13%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
A ++ I+V V ++ A + D + + + +A C +
Sbjct: 43 ANRLNIQVN-VLDADNSPAKQISAHDGHVTGS-------FKEREAVRQLA--KTCDVV-- 90
Query: 87 GYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144
E+ V I PS +AIR + K KE + K +P+ +
Sbjct: 91 TAEI--EHVDTYALEEVASEVKIE--PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVE 146
Query: 145 QNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKV 203
L + E++GYPLM+K+ G+G V + E+ A D +
Sbjct: 147 NTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDI--------PEALEALKDRPL 198
Query: 204 LLEKYIQSPRHIEVQIIGDRYGNYVY-LYERDCSVQRRHQKIIEEAPAPGISSEFRSRLG 262
EK+ + V ++ + Y E +VQ + APA +S +
Sbjct: 199 YAEKWAYFKMELAVIVVKTKDEVLSYPTVE---TVQEDSICKLVYAPARNVSDAINQKAQ 255
Query: 263 STGVQVARAVRYHNAGT--VEF 282
+ A G VE
Sbjct: 256 ELARKAVAAFDG--KGVFGVEM 275
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 48.8 bits (117), Expect = 1e-07
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 652 VVSPMPGMV-------DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704
V SPM G K ++ GQ V GD + ++ AMKM I + SG ++ I +
Sbjct: 7 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66
Query: 705 GQSIQKNQNLVKI 717
GQ ++ ++ LV I
Sbjct: 67 GQPVEFDEPLVVI 79
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 52.2 bits (126), Expect = 3e-07
Identities = 57/263 (21%), Positives = 98/263 (37%), Gaps = 40/263 (15%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
+G+ + +A A V + G+ +L++ +L A +
Sbjct: 18 GYPLGLSFRFLDPSPEACAGQV-----GELVVGE-----FLDEGALLRFA--EGLALV-- 63
Query: 87 GYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144
Y F EN E A +EG ++ P ++A+ + K VP P
Sbjct: 64 TYEF--ENVPVEAARRLEGRLPLY--PPAKALEVAQDRLREKTFFQGLGVPTPP--FHPV 117
Query: 145 QNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKV 203
E L E +R+G P ++K RGG GKG +VR + A A +
Sbjct: 118 DGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTE----EEALEA----LKALGGRGL 169
Query: 204 LLEKYIQSPRHIEVQIIGDRYGNYVY--LYERDCSVQRRHQKIIEEAPAPGISSEFRSRL 261
+LE ++ R + + + R G + L E + + APAPG S + +
Sbjct: 170 ILEGFVPFDREVSLLAVRGRTGEVAFYPLVE---NRHWGGILRLSLAPAPGASEALQKKA 226
Query: 262 GSTGVQVARAVRYHNAGT--VEF 282
+ ++ A+ Y G +EF
Sbjct: 227 EAYALRAMEALDY--VGVLALEF 247
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 49.5 bits (118), Expect = 3e-06
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 112 SSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGG 171
S + M K +K+++ KA V E+ + A ++IK G
Sbjct: 480 SYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL-EKAVASYALFENRAVVIKPKSTNYG 538
Query: 172 KGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ 210
G+ I + A + D +V++E Y+
Sbjct: 539 LGITIFQQGVQNREDFAKALEIAFR--EDKEVMVEDYLV 575
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 47.9 bits (115), Expect = 8e-06
Identities = 62/279 (22%), Positives = 104/279 (37%), Gaps = 45/279 (16%)
Query: 27 AKKMGIRVVSVYS-DIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85
AK+MG ++ V ++ V AD Y + I +A +
Sbjct: 33 AKEMGYKIA-VLDPTKNSPCAQV--ADIEIVAS-------YDDLKAIQHLA--EISDVV- 79
Query: 86 PGYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGE 143
Y F EN +E + + S+ + + T K + KA +PV +
Sbjct: 80 -TYEF--ENIDYRCLQWLEKHAYLP--QGSQLLSKTQNRFTEKNAIEKAGLPVAT--YRL 132
Query: 144 DQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSK 202
QN+E L E + YP ++K GG GKG ++R A + A + N ++
Sbjct: 133 VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSE----ADVDEA----RKLANAAE 184
Query: 203 VLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQK-IIEE--APAPGISSEFRS 259
+LEK++ + + V +I G + + H I+ E PA I+ E
Sbjct: 185 CILEKWVPFEKEVSVIVIRSVSGETKV-FP---VAENIHVNNILHESIVPAR-ITEELSQ 239
Query: 260 RLGSTGVQVARAVRYHNAGT--VEFIMDPSSGEFYFMEM 296
+ + +A + GT VE GE Y E+
Sbjct: 240 KAIAYAKVLADELEL--VGTLAVEMFATA-DGEIYINEL 275
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 48.3 bits (116), Expect = 9e-06
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 151 MEQAERIGYPLMIKAVRGG---GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEK 207
+E+A+ IGYPL+ VR GG+ M IV D A LR + + S ND+ VLL+
Sbjct: 702 VEKAKEIGYPLV---VRASYVLGGRAMEIVYDE----ADLRRYFQTAVSVSNDAPVLLDH 754
Query: 208 YIQSPRHIEVQIIGDRYGNYVYL 230
++ ++V I D G V +
Sbjct: 755 FLDDAVEVDVDAICD--GEMVLI 775
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 47.6 bits (114), Expect = 9e-06
Identities = 62/280 (22%), Positives = 98/280 (35%), Gaps = 43/280 (15%)
Query: 27 AKKMGIRVVSVYS-DIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85
A+ MG RV V D + A V AD Y ++A + ++A C+A+
Sbjct: 54 AQSMGYRVA-VLDPDPASPAGAV--ADRHL-------RAAYDDEAALAELA--GLCEAV- 100
Query: 86 PGYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGE 143
F EN A + + R FV P+ + + K + + VPV +
Sbjct: 101 -STEF--ENVPAASLDFLA--RTTFVAPAGRCVAVAQDRIAEKRFIEASGVPV-APHVVI 154
Query: 144 DQNEEI--LMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFND 200
+ + L + A P ++K R G GKG V + + R A +A
Sbjct: 155 ESAAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTA----REARDA----HAALGG 206
Query: 201 SKVLLEKYIQSPRHIEVQIIGDRYGNYVY--LYERDCSVQRRHQKIIEEAPAPGISSEFR 258
+LEK + + I G L + +V + PAP +
Sbjct: 207 VPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQ---NVHHNGILALTIVPAPAADTARV 263
Query: 259 SRLGSTGVQVARAVRYHNAGT--VEFIMDPSSGEFYFMEM 296
V++A + Y G VEF + G F EM
Sbjct: 264 EEAQQAAVRIADTLGY--VGVLCVEFFVLE-DGSFVANEM 300
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 47.3 bits (112), Expect = 1e-05
Identities = 45/315 (14%), Positives = 101/315 (32%), Gaps = 62/315 (19%)
Query: 20 ACRIMRTAKKMGIRVVSVYSDIDADA-LHVKMADEAYRLEGKSSLDTYLNQAKILDIAVR 78
+ I++ AK G V + K+AD+ ++ S + Q K+ ++
Sbjct: 29 SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELN-- 86
Query: 79 SQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIP 138
+I +G N + G + +R +S +++ +A + V
Sbjct: 87 ----SIVVPHGSFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPK 141
Query: 139 GYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAF 198
Y E E I +++K GG+G I + F + ++
Sbjct: 142 KY-----------ESPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTD 190
Query: 199 ND-SKVLLEKYIQSPRHIEVQIIGDRYGNYVY--LYERD--CSVQRRHQKIIEE---APA 250
D + +E+Y+ +Y Y L + + +R++ I+ PA
Sbjct: 191 EDIANAHIEEYVVGTNF---------CIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPA 241
Query: 251 P-----GISSEF--------------RSRLGSTGVQVARAVRYHNAG------TVEFIMD 285
I+ + ++ G ++ + ++ + +
Sbjct: 242 KDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCN 301
Query: 286 PSSGEFYFMEMNTRL 300
+ E EM+ R+
Sbjct: 302 E-NLELVVFEMSARV 315
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 46.8 bits (112), Expect = 2e-05
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 27 AKKMGIRVVSVYS-DIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIH 85
A+KMG +VV V D +V A E + + Y ++ + + +C I
Sbjct: 31 AQKMGYKVV-VLDPSEDCPCRYV--AHEFIQAK-------YDDEKALNQLG--QKCDVI- 77
Query: 86 PGYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGE 143
Y F EN A+ + I +AI+ + + T KE + A V+P +
Sbjct: 78 -TYEF--ENISAQQLKLLCEKYNIP--QGYQAIQLLQDRLTEKETLKSAGTKVVPFISVK 132
Query: 144 DQNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSK 202
+ + + + E +GYP ++K GG GKG ++ + + +E S+
Sbjct: 133 ESTD--IDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDL--------QEGFKLIETSE 182
Query: 203 VLLEKYI 209
+ EKY+
Sbjct: 183 CVAEKYL 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 4e-05
Identities = 69/424 (16%), Positives = 125/424 (29%), Gaps = 123/424 (29%)
Query: 268 VARAVRYHNAGTVEFIMDPSSGEF--YFMEMN------TRLQVEHPVSEMITGVDLVQ-- 317
V+ V G + +++ EF ++E N +L E+ + ++ +L++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND-TTLVKTKELIKNY 126
Query: 318 WQLMVASGQELPLKQEDLQLRGHSF-ETRIYAENPYEGFLPGAGN----LTHLRPPEHSD 372
+ + + K R ++ A F G GN LR
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----F-GGQGNTDDYFEELR------ 174
Query: 373 TIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLDTNINFLIN 432
++ Y ++ L+ + LS+ LD
Sbjct: 175 ------------DLYQTYHVLVGDLI----------KFSAETLSELIRTTLD-------- 204
Query: 433 LCSNDHFIQG-DIHTGFIDQHKDELLTR--TLPQTEIILQAALSLVLKQIQDAKLEKAKS 489
+ F QG +I E L P + +L +S L I +L +
Sbjct: 205 --AEKVFTQGLNIL---------EWLENPSNTPDKDYLLSIPISCPL--IGVIQL----A 247
Query: 490 NGNVFSLLTGFRMNHSHVKTAALSLVLKQIQDAK-LEKAKS----NRNVFSLLT-----G 539
+ V + L GF + + + A + + S +V +T G
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 540 FRMNHSHVKTVQIQHLNKEYNVQVTLSAHTYRVSIR---GDPSSELCIKNASLTQVSKYG 596
R + + Y +L S+ G PS L I N + QV Y
Sbjct: 308 VR---CY----------EAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY- 352
Query: 597 YELVAEGEKGRIRSSVVCLDGSVSVFTKTGSYQFNLPGKSYSLEPEDSAL--------SD 648
V + V +S+ G+ + G SL + L D
Sbjct: 353 ---VNKTNSHLPAGKQV----EISLV--NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 649 PSKV 652
S++
Sbjct: 404 QSRI 407
Score = 42.3 bits (99), Expect = 6e-04
Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 94/275 (34%)
Query: 218 QIIG---DRYGNYVY---LYER-DCSVQRRH----QKIIEEAPAPGISSEFRSRLGSTGV 266
Q G D Y ++ R D + + I+ P ++ F G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLTIHF-------GG 1678
Query: 267 QVARAVR-YHNAGTVEFIMDPS-SGEFYFMEMN---TRLQVEHPVSEM---------ITG 312
+ + +R ++A E I+D E F E+N T + +T
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 313 VDLVQWQLMVASGQELPLKQEDLQLRGHSF-ETRIY------AENPYEGFLP--GAGNLT 363
++ ++ + + G L D GHS E Y A + +
Sbjct: 1739 MEKAAFEDLKSKG----LIPADATFAGHSLGE---YAALASLA-----DVMSIESLVEVV 1786
Query: 364 HLR-------PPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALS 416
R P R E G ++++ + + E AL + + +
Sbjct: 1787 FYRGMTMQVAVP------RDELGRSNYGMIAINPGRVAASFS--QE----ALQYVVERVG 1834
Query: 417 -----------------QYQIAG----LDTNINFL 430
QY AG LDT N L
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Score = 42.0 bits (98), Expect = 8e-04
Identities = 57/356 (16%), Positives = 96/356 (26%), Gaps = 151/356 (42%)
Query: 132 AEVPV-IPGYHGEDQNEEILMEQ-------AERIGY-P-LMIKAVRGGGGKGMRIV---- 177
+P+ P I + Q A+ +G+ P + ++G G +V
Sbjct: 232 LSIPISCPL---------IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 178 ----RDSANFLAQLRSAQR-------ESQSAF----------NDS--------------- 201
+F +R A A+ DS
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 202 ---KVLLEKYIQS-----P--RHIEVQII-GDRYGNYV------YLYERDCSVQRRHQKI 244
+ ++ Y+ P + +E+ ++ G + N V LY + +K
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NLVVSGPPQSLY----GLNLTLRKA 396
Query: 245 IEEAPAPGISS--EFRSRLGSTGVQ---VARAVRYHN---AGTVEFIM-DPSSGEFYFME 295
+AP+ S F R + VA +H+ + I D F
Sbjct: 397 --KAPSGLDQSRIPFSERKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFN- 451
Query: 296 MNTRLQVEHPVSEMITGVDL-------------------VQWQLMVASGQELPLKQEDLQ 336
+Q+ PV + G DL V+W+
Sbjct: 452 -AKDIQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK----------- 497
Query: 337 LRGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETG----VIEGDEVSV 388
T I P G G G LTH R + G VI + +
Sbjct: 498 ------ATHILDFGP--GGASGLGVLTH----------RNKDGTGVRVIVAGTLDI 535
Score = 41.2 bits (96), Expect = 0.001
Identities = 57/327 (17%), Positives = 102/327 (31%), Gaps = 118/327 (36%)
Query: 317 QWQLMVASGQEL----PLKQE-----DLQLR---GHSFETRIYAENPYEGFLPGAGNLTH 364
Q Q M G +L Q+ D + G S I NP LT
Sbjct: 1627 QEQGM---GMDLYKTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVN--------LTI 1674
Query: 365 LRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQALSQYQIAGLD 424
E IR +Y MI + +V + +T + K ++
Sbjct: 1675 HFGGEKGKRIR------------ENYSAMIFETIVDGKLKTEKIFK-----------EIN 1711
Query: 425 TNINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQ-TEIILQAALSLVLKQIQDAK 483
+ T + + + LL+ T Q T Q AL+L+ K A
Sbjct: 1712 EHS------------------TSYTFRSEKGLLSAT--QFT----QPALTLMEK----AA 1743
Query: 484 LEKAKSNGNV--FSLLTGFRMNHS------HVKTA-------ALSLV-----LKQIQDAK 523
E KS G + + G HS A + +V Q+ +
Sbjct: 1744 FEDLKSKGLIPADATFAG----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 524 LEKAKSNRNVFSLLTGFRM----NHSHVKTVQIQHLNKE---------YNV---QVTLSA 567
E +SN + ++ G R+ + ++ V ++ + K YNV Q +
Sbjct: 1800 DELGRSNYGMIAINPG-RVAASFSQEALQYV-VERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 568 HTYRVSIRGDPSSELCIKNASLTQVSK 594
+ + + + ++ + ++ K
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQK 1884
Score = 34.6 bits (79), Expect = 0.16
Identities = 52/335 (15%), Positives = 97/335 (28%), Gaps = 124/335 (37%)
Query: 426 NINFLINLCSNDHFIQGDIHTGFIDQHKDELLTRTLPQ-TEIILQ-----AALSLVLKQI 479
++ ++ + + F Q +++ + LP+ TE LV K +
Sbjct: 15 SLEHVLLVPTASFF--------IASQLQEQF-NKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 480 Q--DAKLEKAKSNGN---VFSLLTGFR---MNHSHVKTAALSLVLKQIQDAKLEKAK--- 528
+ +E +K + LT F + + + A L+ Q D L K K
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL--QENDTTLVKTKELI 123
Query: 529 ---------SNRNVFS-----LLTGFRMNHSHVKTV---Q---------IQHLNKEYNVQ 562
+ R L ++ + + Q ++ L Y
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL---YQ-- 178
Query: 563 VTLSAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGRIRSSVVCLDGSVSVF 622
TY V + +L +A EL+ VF
Sbjct: 179 ------TYHVLVG-----DLIKFSAETLS------ELIRTTLDAE------------KVF 209
Query: 623 TKTGSYQFNLPG--KSYSLEPEDSAL-SDPSKVVS-PMPGMVD--------KVL-VQPGQ 669
T+ N+ ++ S P+ L S P +S P+ G++ K+L PG+
Sbjct: 210 TQG----LNILEWLENPSNTPDKDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 670 AVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704
G +G + + A
Sbjct: 263 LRS----------------YLKGATGHSQGLVTAV 281
Score = 29.6 bits (66), Expect = 4.9
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 62/144 (43%)
Query: 593 SKYGY---ELVAE----------GEKGR-IRSSV------VCLDGSVS---VFTKTGSYQ 629
YG+ ++V GEKG+ IR + +DG + +F +
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK-----E 1709
Query: 630 FNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI-IA----MK 684
N SY+ E LS QP A + ++ A +K
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQ-------------FTQP--A------LTLMEKAAFEDLK 1748
Query: 685 MEYVITSGTSGIIEEIFYAAGQSI 708
+ G+I AG S+
Sbjct: 1749 SK--------GLIPADATFAGHSL 1764
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine
nucleotide biosynthetic pathway, structural genomics,
NPPSFA; 2.35A {Aquifex aeolicus}
Length = 365
Score = 44.9 bits (107), Expect = 6e-05
Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 37/186 (19%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
+K+G + V + +A ++AD +I + C I
Sbjct: 20 GRKLGFKFH-VL-EDKENAPACRVADR------------CFRTGQISEFV--DSCDII-- 61
Query: 87 GYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144
Y F E+ E E + P+ +A+ + K + K PV +
Sbjct: 62 TYEF--EHIKDEVLEKCESK----LIPNPQALYVKKSRIREKLFLKKHGFPVPE-FLVIK 114
Query: 145 QNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKV 203
++E +++ + P++IKA + G GKG ++ ++ +
Sbjct: 115 RDE--IIDALKSFKLPVVIKAEKLGYDGKGQYRIKKL----EDANQV---VKNHDKEESF 165
Query: 204 LLEKYI 209
++E+++
Sbjct: 166 IIEEFV 171
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 44.7 bits (105), Expect = 7e-05
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 24/171 (14%)
Query: 152 EQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQS 211
E + I P+++K GGKG + +D +F + + + + +++Y+
Sbjct: 120 EDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DLKNIQIQEYVLG 178
Query: 212 PR------------HIEVQIIGDRY-GNYVYLYERDCSVQRRHQ---KIIEEAPAPG-IS 254
+E+ I RY N + Q P +
Sbjct: 179 VPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLR 238
Query: 255 SEFRSRLGSTGVQVARAVRYHNAG-----TVEFIMDPSSGEFYFMEMNTRL 300
+ G +V +A G +E + P EF E++ R+
Sbjct: 239 ESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DLEFVVFEISARI 288
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 44.1 bits (103), Expect = 1e-04
Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 12/125 (9%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAE----VPVIPGYHGEDQNEEILMEQAERIGYPLM 162
I S ++ N K M++ P M + YP++
Sbjct: 211 IPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSS--TTYPVV 268
Query: 163 IKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD 222
+K G G V + +F + E +I + + VQ IG
Sbjct: 269 VKMGHAHSGMGKVKVDNQHDFQDIASVVAL------TKTYATAEPFIDAKYDVRVQKIGQ 322
Query: 223 RYGNY 227
Y Y
Sbjct: 323 NYKAY 327
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 43.2 bits (101), Expect = 2e-04
Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 12/127 (9%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAEV----PVIPGYHGEDQNEEILMEQAERIGYPLM 162
+ S E+I N K M+ P M +P++
Sbjct: 99 LPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTL--PTFPVV 156
Query: 163 IKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGD 222
+K G G V + +F S A + E +I + I VQ IG+
Sbjct: 157 VKIGHAHSGMGKVKVENHYDFQD------IASVVALTQTYATAEPFIDAKYDIRVQKIGN 210
Query: 223 RYGNYVY 229
Y Y+
Sbjct: 211 NYKAYMR 217
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 43.7 bits (103), Expect = 2e-04
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 112 SSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERI-GYPLMIKAVRGGG 170
+ M K +K+I+ + P G D+ E + +I P+++K
Sbjct: 475 NYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKE--ALNYFSQIQDKPIVVKPKSTNF 532
Query: 171 GKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQ 210
G G+ I + SAN LA A + + DS +L+E+YI+
Sbjct: 533 GLGISIFKTSAN-LASYEKAIDIAFT--EDSAILVEEYIE 569
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 42.1 bits (98), Expect = 4e-04
Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 44/207 (21%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAE--VPVIPGYHGEDQNEEILMEQAERIGYPLMIK 164
+ S ++ N K +IK + E +P+++K
Sbjct: 116 LPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVK 175
Query: 165 AVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRY 224
G G V + +F S A + E +I S I +Q IG Y
Sbjct: 176 LGHAHAGMGKIKVENQLDFQDIT------SVVAMAKTYATTEAFIDSKYDIRIQKIGSNY 229
Query: 225 GNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQ--------------VAR 270
Y+ R IS +++ GS ++ +
Sbjct: 230 KAYM----------RT-----------SISGNWKANTGSAMLEQVAMTERYRLWVDSCSE 268
Query: 271 AVRYHNAGTVEFIMDPSSGEFYFMEMN 297
+ V+ + G Y +E+
Sbjct: 269 MFGGLDICAVKAVHS-KDGRDYIIEVM 294
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 41.7 bits (99), Expect = 6e-04
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 24/158 (15%)
Query: 27 AKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQAKILDIAVRSQCQAIHP 86
AKKMG V+ + + A V ADE + + +I D+
Sbjct: 20 AKKMGFYVIVLDPTPRSPAGQV--ADEQIVAG-------FFDSERIEDLV--KGSDVT-- 66
Query: 87 GYGFLSEN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGED 144
Y E+ + + N + PS + + K KE + K +PV +D
Sbjct: 67 TYDL--EHIDVQTLKKLY-NEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKD 123
Query: 145 QNEEILMEQAERIGYPLMIKAVRGG-GGKGMRIVRDSA 181
L G+P++ KA +GG G+G+ I+++
Sbjct: 124 -----LESDVREFGFPVVQKARKGGYDGRGVFIIKNEK 156
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp,
purine biosynthesis, antimicrobial, ATP-binding,
decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli}
SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A*
1b6s_A*
Length = 355
Score = 41.4 bits (98), Expect = 8e-04
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 93 EN--AEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEIL 150
E F + + + + T K++ K +P P
Sbjct: 51 ERWPETALTRQLARHPAF--VNRDVFPIIADRLTQKQLFDKLHLPTAP--WQLLAERSEW 106
Query: 151 MEQAERIGYPLMIKAVRGG-GGKGMRIVRDSA 181
+R+G ++K GG G+G +R +
Sbjct: 107 PAVFDRLGELAIVKRRTGGYDGRGQWRLRANE 138
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 664 LVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V+ G V D I + + K ITS G+I++++Y + LV I
Sbjct: 25 YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
Score = 32.3 bits (74), Expect = 0.091
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVI 680
S G++ K+ G P++ I
Sbjct: 52 SRYDGVIKKLYYNLDDIAYVGKPLVDI 78
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 35.3 bits (82), Expect = 0.006
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 664 LVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V+ G V+ ++ ++ K+ I S G I +I Y GQ + L++I
Sbjct: 22 DVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQI 75
Score = 32.2 bits (74), Expect = 0.080
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 654 SPMPGMVDKVLVQPGQAVKTGDPIMVI 680
SP+ G + K+L + GQ V G ++ I
Sbjct: 49 SPVRGKIVKILYREGQVVPVGSTLLQI 75
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 37.2 bits (87), Expect = 0.019
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G + K V+PG V D + + K I S G + EI G Q L+ +
Sbjct: 17 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 76
Score = 32.6 bits (75), Expect = 0.51
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ SP+ G V ++LV G G ++ +
Sbjct: 48 IPSPVKGKVLEILVPEGTVATVGQTLITL 76
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 33.8 bits (78), Expect = 0.022
Identities = 10/64 (15%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 656 MPGMVD--KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQN 713
+P +V+ +V+V+ G V ++ + K + + +G+++E+ G ++
Sbjct: 7 VPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSL 66
Query: 714 LVKI 717
++
Sbjct: 67 IMIF 70
Score = 30.8 bits (70), Expect = 0.32
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 638 SLEPEDSAL---SDPS--KVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ E S + D + +V +P G+V ++ V G VKTG IM+
Sbjct: 23 KVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 70
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 36.2 bits (84), Expect = 0.031
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
KV+ P+ G + + Q G VK GD + I
Sbjct: 59 KVLPPLAGRIVSLNKQLGDEVKAGDVLFTI 88
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 651 KVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIA 682
V SP+ G V + G ++ +A
Sbjct: 172 AVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 32.6 bits (75), Expect = 0.061
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 663 VLVQPGQAVKTGDPIMVIIAMK--MEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V+V+ G V ++ + K ME + + +G+++E+ G ++ ++
Sbjct: 20 VMVKVGDKVAAEQSLITVEGDKASME--VPAPFAGVVKELKVNVGDKVKTGSLIMIF 74
Score = 31.4 bits (72), Expect = 0.16
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 638 SLEPEDSAL---SDPS--KVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ E S + D + +V +P G+V ++ V G VKTG IM+
Sbjct: 27 KVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 74
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 35.1 bits (81), Expect = 0.077
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 638 SLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
S+E ++ V + + G + K+ V+ GQ VK GD + I
Sbjct: 26 SIESINTV-----DVGAQVSGKITKLYVKLGQQVKKGDLLAEI 63
Score = 29.8 bits (67), Expect = 3.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAV---KTGDPIMVIIAM-KME 686
+K+ SP+ G V V GQ V +T I+ + + KM
Sbjct: 155 TKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKMR 195
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 32.2 bits (74), Expect = 0.085
Identities = 10/57 (17%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 663 VLVQPGQAVKTGDPIMVIIAMK--MEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
+LV+ G ++ ++V+ + K ME + S +G+++ + G +++ ++++
Sbjct: 18 LLVKTGDLIEVEQGLVVLESAKASME--VPSPKAGVVKSVSVKLGDKLKEGDAIIEL 72
Score = 31.4 bits (72), Expect = 0.17
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 638 SLEPEDSAL---SDPS--KVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+E E + S + +V SP G+V V V+ G +K GD I+ +
Sbjct: 25 LIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIEL 72
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 31.8 bits (73), Expect = 0.094
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 663 VLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V V G + D ++ + K + + +G+++E+ G I + +V +
Sbjct: 21 VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV 75
Score = 30.7 bits (70), Expect = 0.28
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 638 SLEPEDSAL---SDPS--KVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
++ +D+ + +D + V + + G+V +V V+ G + G I+V+
Sbjct: 28 TIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV 75
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 34.5 bits (78), Expect = 0.12
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 646 LSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM------KMEYVITSGTSGIIEE 699
L + K +P GMV+ L + G +K DP++ ++ + + V+ G+
Sbjct: 287 LKNYRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVP-- 343
Query: 700 IFYAAGQSIQKNQNLVKIV 718
I + A S+ + L K++
Sbjct: 344 ILHFASASVHQGTELYKVM 362
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 32.7 bits (75), Expect = 0.36
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 638 SLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
L+ V + + G + + V G VK + VI
Sbjct: 25 KLDALRKV-----DVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 62
Score = 29.6 bits (67), Expect = 3.6
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 650 SKVVSPMPGMVDKVLVQPGQAV---KTGDPIMVIIAM-KME 686
+++V+PM G V ++ GQ V + I+ + M M
Sbjct: 154 TRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAML 194
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold,
rossmann-fold, structural genomics, PSI-2, structure
initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Length = 261
Score = 32.2 bits (72), Expect = 0.46
Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 23/208 (11%)
Query: 161 LMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQII 220
L+ KA+ G + + S L A + + + E + H + ++
Sbjct: 59 LIEKALERGAS--VTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDF-VL 115
Query: 221 GDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTV 280
DR L R + + R + + + +LG + + +GT+
Sbjct: 116 NDR------LINRFTTEEARRACLGMLSLVGSGTVRASVKLGFYDIDLKLIEYGEQSGTL 169
Query: 281 EFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQL--- 337
DPS F+F E L +I L++W G+E ED++
Sbjct: 170 AKFFDPSDKTFHFREAGDVLDRALVPHGLIDKPTLLEW--YRRRGKETRFDDEDVRALLS 227
Query: 338 ----RGHSFETRIYAENPYEGFLPGAGN 361
+ T E E LP A N
Sbjct: 228 HDVVNARGYVT---LEKAVE--LPDAPN 250
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 31.7 bits (72), Expect = 0.78
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ +P+ G++ ++ G + + + I
Sbjct: 210 LKAPIDGVITAFDLRAGMNIAKDNVVAKI 238
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 650 SKVVSPMPGMVDKVLV-QPGQAVKTGDPIMVI 680
+ V + G +DKV G V+ G P++ +
Sbjct: 122 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDL 153
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 31.3 bits (72), Expect = 1.3
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 125 SKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA-VRGGG-GKG 173
+KEI+ + VPV PG E AE G ++IKA V GG GK
Sbjct: 8 AKEILARYGVPVPPGKVAYTPEE--AKRIAEEFGKRVVIKAQVHVGGRGKA 56
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national
on protein structural and functional analyses; 2.00A
{Pyrococcus horikoshii}
Length = 238
Score = 30.2 bits (69), Expect = 2.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 125 SKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166
+K+++ +PV + +E +E A+ IGYP+++K +
Sbjct: 25 AKQVLKAYGLPVPEEKLAKTLDE--ALEYAKEIGYPVVLKLM 64
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase
activity1, lyase-transferase complex; 2.20A {Vibrio
vulnificus}
Length = 183
Score = 29.6 bits (67), Expect = 2.4
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 662 KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGI----------IEEIFYAAGQSIQKN 711
+ + GQ VK GD +I + + S + I+E+ +G +
Sbjct: 119 TRIAEEGQTVKAGDT---VIEFDLALLEEKAKSTLTPVVISNMDEIKELNKLSGSVVVGE 175
Query: 712 QNLVKIV 718
++++
Sbjct: 176 TPVLRVT 182
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.6
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 23/50 (46%)
Query: 206 EKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISS 255
EK Q+ + ++ + LY D APA I +
Sbjct: 18 EK--QALKKLQ---------ASLKLYADD------------SAPALAIKA 44
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 29.7 bits (68), Expect = 3.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165
+F GP+ +A G K+ +K +M + +P Y + E L E +G P+++K
Sbjct: 88 LF-GPTQKAAMIEGSKAFAKGLMERYGIP-TARYRVFREPLEAL-AYLEEVGVPVVVKD 143
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 3.4
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 82 QAIHPGYGFLSENAEFANAVEGNR--LIFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPG 139
+ P +S E ++ + + L+ + E N+ I+ EI+ +
Sbjct: 139 AKVPPLIRIVS-GLELSDTKQKGKKFLVI---AYEPFENIAIELPPNEILFSENNDMDNN 194
Query: 140 YHGEDQNEE 148
G D+ +
Sbjct: 195 NDGVDELNK 203
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 29.8 bits (66), Expect = 3.5
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 648 DPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAM----KMEYVITSGTSGIIEEIFYA 703
+ S G+ ++++ G+ V+ GD + + + + + SG++ I
Sbjct: 256 GDCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVL--ISRH 312
Query: 704 AGQSIQKNQNLVKI 717
I+ I
Sbjct: 313 FPGMIKSGDCAAVI 326
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P
receptor, CI-MPR; P-lectin, protein transport,S binding
protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP:
b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Length = 432
Score = 29.9 bits (66), Expect = 3.6
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 408 LNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIH--------TGFIDQHKDELLTR 459
LN + + Y + D + + IN+C + ++ D
Sbjct: 148 LNPLIKTSGAYLVDDSDPDTSLFINVCRDIEVLRASSPQVRVCPTGAAACLVRGDRAFDV 207
Query: 460 TLPQTEIILQAALSLVLKQIQDAKLEKAKSNGNVFSLLTGFRMNHSHVKTAALSLV 515
PQ + L + LVL +++ + +G+ ++ F + L
Sbjct: 208 GRPQEGLKLVSNDRLVLSYVKEGAGQPDFCDGHSPAVTITFVCPSERREGTIPKLT 263
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 27.2 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G V +PG+AVK + I+ I K+ + + G+I EI G ++ + L K+
Sbjct: 16 GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75
>3k8r_A Uncharacterized protein; unknown function, structural genomics,
joint center for STRU genomics, JCSG; 2.75A
{Rhodospirillum rubrum atcc 11170}
Length = 124
Score = 28.4 bits (63), Expect = 3.8
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 18 EIACRIMRTAKKMGIRVVSVYSDIDADALHVKMAD 52
+ A R+A R D + + V + +
Sbjct: 11 DAALERGRSAHANEPRAAKARYDRSSARVIVDLEN 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 4.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 13 IANRGEIACRIMRTA--KKMG-IRVVSVYSDIDADALHVKM----------ADEAYRLEG 59
I ++ E A RIM T + MG ++ I+ V + D Y E
Sbjct: 585 IDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMYS-ES 643
Query: 60 KSSLDTYLN 68
K SL+T N
Sbjct: 644 KLSLETLFN 652
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe
protein, PSI, protein structure initiative; 2.01A
{Porphyromonas gingivalis} SCOP: b.129.2.1
Length = 104
Score = 28.0 bits (62), Expect = 4.3
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 351 PYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPM 393
PY G++ G H+ IR G GD V V P+
Sbjct: 64 PYTGYIVRMGLPCHILGL--RQDIRRAIGKQPGDSVYVTLLPL 104
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript
evidence; PUF repeats, RNA binding protein-RNA complex;
HET: EPE; 2.90A {Caenorhabditis elegans}
Length = 382
Score = 29.2 bits (65), Expect = 4.4
Identities = 15/125 (12%), Positives = 47/125 (37%), Gaps = 11/125 (8%)
Query: 217 VQIIGDRYGNYV--YLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRY 274
++ + + NYV Y+ + ++ II++ + S + + S ++ A +
Sbjct: 222 YRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIE--GAFLF 279
Query: 275 HNAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMIT---GVDLVQWQLMVASGQELPLK 331
+ +M+ E + + + ++ G +VQ + + + + +
Sbjct: 280 APPALLHEMME----EIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKE 335
Query: 332 QEDLQ 336
+ +L
Sbjct: 336 ERELP 340
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3
PDB: 1viv_A
Length = 186
Score = 28.8 bits (65), Expect = 4.4
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 11 ILIANRGEIA--CRIMRTAKKMGIRVVSVYSDID------ADA-LHVKMADEAYRLEGKS 61
I+ + GE AK + V ++ + + AD + + + +
Sbjct: 84 IIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYK 143
Query: 62 SL 63
++
Sbjct: 144 TI 145
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 27.2 bits (61), Expect = 4.5
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V +PG AV + ++ I K+ + + GI++ + G ++ Q L ++
Sbjct: 17 ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase,
signal transduction, sugar transport; 1.98A {Escherichia
coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F*
1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Length = 161
Score = 28.4 bits (64), Expect = 4.7
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 662 KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGI----------IEEIFYAAGQSIQKN 711
K + + GQ VK GD +I + + S + I+E+ +G
Sbjct: 97 KRIAEEGQRVKVGDT---VIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGE 153
Query: 712 QNLVKI 717
+++I
Sbjct: 154 TPVIRI 159
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell
out membrane, hydrolase, membrane, metal-binding; 2.00A
{Pseudomonas aeruginosa} PDB: 3it7_A*
Length = 182
Score = 28.7 bits (64), Expect = 5.1
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 661 DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTS 694
D++ V GQ V + V + G+S
Sbjct: 83 DQIQVSNGQQVSADTKLGVYAGNINTALCEGGSS 116
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 28.6 bits (64), Expect = 5.4
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 625 TGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPI 677
G Y+ SY S SD ++V+ + QPG AV +G +
Sbjct: 64 AGRYRC-----SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDV 111
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 28.6 bits (64), Expect = 5.6
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 648 DPSKVVSPMP--------GMVDKVLVQPGQAVKTGDPIMVI----IAMKMEYVITSGTSG 695
DP K++ MP G + K L + G+AV GD + I + ++ + G
Sbjct: 2 DPIKIL--MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLD----ASDDG 55
Query: 696 IIEEIFYAAG-QSIQKNQNLVKIVP 719
I+ +I G ++I+ + IV
Sbjct: 56 ILAKIVVEEGSKNIRLGSLIGLIVE 80
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta
dimeric protein with A fold resembling A hotdog, PSI;
1.70A {Shewanella oneidensis} SCOP: d.38.1.5
Length = 155
Score = 28.4 bits (63), Expect = 5.7
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 551 QIQHLNKEYNVQVTLSAHTYRVSIRGDPSSELCIKNASLTQVSKYGYELVAEGEKGRIRS 610
Q Q LN + ++ + + Y + P ++ + +L + G K +++
Sbjct: 80 QQQLLNVDGDIVLADAHIRYLAPVTSAPEVKVRWPDTNL--------SPLQRGRKAKVKL 131
Query: 611 SVVCLDGSVSVFTKTGSY 628
V G Y
Sbjct: 132 EVQLFCDGKLCAQFDGLY 149
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus
kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Length = 451
Score = 29.0 bits (66), Expect = 5.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165
IF GPS A G K+ +KE+M K +P + EE E+ G P++IKA
Sbjct: 110 IF-GPSQRAALIEGSKAFAKELMKKYGIP-TADHAAFTSYEEAK-AYIEQKGAPIVIKA 165
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 29.0 bits (66), Expect = 6.8
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165
IF GP+ EA + G K+ +K M K +P Y E+ E E++G P+++KA
Sbjct: 89 IF-GPNKEAAKLEGSKAFAKTFMKKYGIP-TARYEVFTDFEKAK-EYVEKVGAPIVVKA 144
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 28.6 bits (65), Expect = 7.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 107 IFVGPSSEAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKA 165
+F GPS A G K +K++M K ++P Y +E + G P++IKA
Sbjct: 89 VF-GPSKAAAIIEGSKQFAKDLMKKYDIP-TAEYETFTSFDEAK-AYVQEKGAPIVIKA 144
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic
component, PSI- 11023L, structural genomics, protein
structure initiative; HET: BDR; 1.90A {Hahella
chejuensis}
Length = 276
Score = 28.4 bits (64), Expect = 7.6
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 3 IASCVLDSILIANRGEIACR-IMRTAKKMGIRVVSVYSDIDADA 45
++ D++++A + + I V+ V SD+ DA
Sbjct: 55 LSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDA 98
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 28.8 bits (65), Expect = 7.7
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKM 50
LD + +R R + K GI ++ D+D D + M
Sbjct: 377 LDENIRKSRTAREARYLALVKDFGIPAPYIF-DVDLDNKRIMM 418
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Length = 282
Score = 28.6 bits (64), Expect = 7.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 661 DKVLVQPGQAVKTGDPI 677
K+ V+ GQ V G +
Sbjct: 230 SKIDVKLGQQVPRGGVL 246
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 28.5 bits (64), Expect = 8.2
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 126 KEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKG---MRIVRDSAN 182
++ EV ++ H +DQ E L+ RG G G M V + A
Sbjct: 103 ARTLLPGEV-LVTAQHLDDQCETFLL------------ALKRGSGPAGLSAMAEVSEFAG 149
>2bi0_A Hypothetical protein RV0216; conserved hypothetical, hotdog-fold,
structural proteomics in europe, spine, structural
genomics; 1.9A {Mycobacterium tuberculosis} SCOP:
d.38.1.4 d.38.1.4
Length = 337
Score = 28.5 bits (63), Expect = 8.3
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 15/124 (12%)
Query: 292 YFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQE--------------DLQL 337
YF +++ + ++ Q +V + L L + +
Sbjct: 14 YFDDLSKGQVFDWAPGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVTGMPGPLAHPGLV 73
Query: 338 RGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKL 397
+ A + L L R P DT+ T V+ S + L
Sbjct: 74 CDVAIGQSTLATQRVKANL-FYRGLRFHRFPAVGDTLYTRTEVVGLRANSPKPGRAPTGL 132
Query: 398 VVWD 401
Sbjct: 133 AGLR 136
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 28.4 bits (64), Expect = 9.4
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 278 GTVEFIMDPSSGEFYFMEMNTRL 300
G F++DP+ GEF ++ + ++
Sbjct: 180 GVNCFMLDPAIGEFILVDRDVKI 202
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 27.9 bits (62), Expect = 9.4
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 617 GSVSVFTKTGSYQFNLPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDP 676
+ G YQ Y + SD ++V + G + G+
Sbjct: 69 DHMDANK-AGRYQC-----QYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGEN 122
Query: 677 I 677
I
Sbjct: 123 I 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,818,492
Number of extensions: 678772
Number of successful extensions: 1975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1846
Number of HSP's successfully gapped: 143
Length of query: 720
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 620
Effective length of database: 3,909,693
Effective search space: 2424009660
Effective search space used: 2424009660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)