RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15251
(720 letters)
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 217 bits (555), Expect = 4e-66
Identities = 45/293 (15%), Positives = 100/293 (34%), Gaps = 26/293 (8%)
Query: 126 KEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLA 185
M K + E + A +G+P +I+ GG G I +
Sbjct: 6 DVAMKKIGLETARSGIAHTMEE--ALAVAADVGFPCIIRPSFTMGGSGGGIAYNRE---- 59
Query: 186 QLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY--LYERDCSVQRRHQK 243
+ ++L+++ + + E++++ D+ N + E ++
Sbjct: 60 EFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGD 119
Query: 244 IIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGT-VEFIMDPSSGEFYFMEMNTRLQV 302
I APA ++ + + + + V R + G+ V+F ++P +G +EMN R+
Sbjct: 120 SITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSR 179
Query: 303 EHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQLRGHSFETRIYAENPYEGFLPGAGNL 362
++ TG + + +A G L D I F P ++
Sbjct: 180 SSALASKATGFPIAKVAAKLAVGYTLDELMND-----------ITGGRTPASFEP---SI 225
Query: 363 THLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKLVVWDENRTLALNKMKQAL 415
++ E D ++ + +++ + +L K + L
Sbjct: 226 DYVVTKIP--RFNFEKFAGANDRLTTQMK-SVGEVMAIGRTQQESLQKALRGL 275
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 199 bits (507), Expect = 3e-60
Identities = 106/217 (48%), Positives = 153/217 (70%), Gaps = 3/217 (1%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGE-DQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDS 180
K ++ M KA VP +PG G + + A+RIGYP++IKA GGGG+GMR+VR
Sbjct: 2 KVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGD 61
Query: 181 ANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRR 240
A + + E+++AF++ V +EKY+++PRH+E+Q++ D GN +YL ERDCS+QRR
Sbjct: 62 AELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRR 121
Query: 241 HQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRL 300
HQK++EEAPAPGI+ E R +G + + Y AGT EF+ + +GEFYF+EMNTR+
Sbjct: 122 HQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRI 179
Query: 301 QVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQL 337
QVEHPV+EMITGVDL++ QL +A+GQ L +KQE++ +
Sbjct: 180 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHV 216
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 197 bits (502), Expect = 2e-59
Identities = 105/215 (48%), Positives = 156/215 (72%), Gaps = 1/215 (0%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K+ SKE+M KA VPV+PG G ++ E A IGYP+++KA GGGG+G+RI R+
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
+ A RE++ AF +LLEK+I++P+HIE Q++GD++GN ++L ERDCS+QRR+
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRN 120
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
QK++E AP+ ++ E R G+ + A+ + Y+NAGT+EFI D G YF+EMNTR+Q
Sbjct: 121 QKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMNTRIQ 179
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQ 336
VEHPVSEM+TG+D+V+WQ+ +A+G+ L +KQED++
Sbjct: 180 VEHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVK 214
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 160 bits (405), Expect = 2e-45
Identities = 28/234 (11%), Positives = 71/234 (30%), Gaps = 36/234 (15%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
+S +++ +A + V Y E E I +++K GG+G I +
Sbjct: 2 RSLEGKLLREAGLRVPKKY-----------ESPEDIDGTVIVKFPGARGGRGYFIASSTE 50
Query: 182 NFLAQLRSAQRESQSAF-NDSKVLLEKYIQSPR------------HIEVQIIGDRYGNYV 228
F + ++ + + +E+Y+ +E+ + RY + +
Sbjct: 51 EFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNI 110
Query: 229 YLYERDCSVQRRHQKIIEE-----APAPGISSEFRSRLGSTGVQVARAVR------YHNA 277
R + + I I ++ G ++ +
Sbjct: 111 DGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGP 170
Query: 278 GTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLK 331
++ + + + E EM+ R+ + ++ GQ + +
Sbjct: 171 FCLQSLCNE-NLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQRIARE 223
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 149 bits (376), Expect = 3e-41
Identities = 93/269 (34%), Positives = 136/269 (50%), Gaps = 35/269 (13%)
Query: 120 GIKSTSKEIMIKAEVPVIPG------------------------YHGEDQNEEILMEQAE 155
G K +S + A+VP IP G + E +++A+
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 156 RIGYPLMIKAVRGGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHI 215
RIG+P+MIKA GGGGKG+R V +F+A A E S + + K RH+
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLAGRARHL 116
Query: 216 EVQIIGDRYGNYVYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYH 275
EVQ++ D+YG + L+ RDCSVQRRHQKIIEEAP +E + V++ + V Y
Sbjct: 117 EVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYV 176
Query: 276 NAGTVEFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDL 335
+AGTVE++ G+FYF+E+N RLQVEHP +EM++GV+L QL +A G + +
Sbjct: 177 SAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIR 236
Query: 336 QLRG------HSFETRIYAENPY-EGFLP 357
L G + ++ + P
Sbjct: 237 TLYGMNPHSASEIDFEFKTQDATKKQRRP 265
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 144 bits (364), Expect = 1e-39
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Query: 126 KEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSANFLA 185
+ + + ++ E+ +E+A+ IGYPL+++A GG+ M IV D A
Sbjct: 3 QHAVERLKLKQPAN--ATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEA---- 56
Query: 186 QLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRHQKII 245
LR + + S ND+ VLL+ ++ ++V I D G V + +++
Sbjct: 57 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSG 114
Query: 246 EEAP---APGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQV 302
+ A A +S E + + ++A ++ V+F + E Y +E+N R
Sbjct: 115 DSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKN--NEVYLIEVNPRAAR 172
Query: 303 EHPVSEMITGVDLVQWQLMVASGQ 326
P TGV L + V +G+
Sbjct: 173 TVPFVSKATGVPLAKVAARVMAGK 196
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Aquifex aeolicus [TaxId: 63363]}
Length = 114
Score = 138 bits (348), Expect = 4e-39
Identities = 56/113 (49%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
++ +L+ANRGEIA RI+R K++GI V++Y+++++ A HVK+ADEAY + G LDTYL
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMI-GTDPLDTYL 60
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMG 120
N+ +I+++A+ AIHPGYGFL+ENAEFA E + F+GP + I MG
Sbjct: 61 NKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMG 113
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 133 bits (335), Expect = 2e-37
Identities = 59/113 (52%), Positives = 75/113 (66%)
Query: 8 LDSILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYL 67
LD I+IANRGEIA RI+R K++GI+ V+V+S D D HV +ADE + S+ +YL
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 68 NQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIRNMG 120
N I+ A + AIHPGYGFLSENA FA VE + IF+GP +E IR MG
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 170
Score = 134 bits (338), Expect = 4e-37
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 7 VLDSILIANRGEIACRIMRTAKKMGIR-----------VVSVYSDIDADALHVKMADEAY 55
V+ ILIAN G A + +R+ +K ++ D++A+A +++MAD+
Sbjct: 45 VISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYI 104
Query: 56 RLEGKSSLDTYLNQAKILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNR--LIFVGPSS 113
+ G ++ + Y N I+DIA R+ A+ G+G SEN + ++ +IF+GP
Sbjct: 105 EVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPG 164
Query: 114 EAIRNM 119
A+R++
Sbjct: 165 NAMRSL 170
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 129 bits (324), Expect = 2e-34
Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 33/231 (14%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
++ ++ + KA + V Y E + I P+++K GGKG + +D
Sbjct: 2 RNLERKWLKKAGIRVPEVY-----------EDPDDIEKPVIVKPHGAKGGKGYFLAKDPE 50
Query: 182 NFLAQLRSA---------QRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVY--- 229
+F + + + + Y S E++++
Sbjct: 51 DFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDA 110
Query: 230 LYERDCSVQRRHQKIIEE----APAPGISSEFRSRLGSTGVQVARAVR-----YHNAGTV 280
+ Q I + + G +V +A +
Sbjct: 111 IGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCL 170
Query: 281 EFIMDPSSGEFYFMEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELPLK 331
E + P EF E++ R+ + + +++ V++G+ + ++
Sbjct: 171 EGVFTP-DLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAME 220
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain
{Escherichia coli [TaxId: 562]}
Length = 116
Score = 117 bits (295), Expect = 7e-32
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 338 RGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKL 397
RGH+ E RI AE+P FLP G +T P +R E+ + G V +YD MI KL
Sbjct: 1 RGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFG-VRWESHIYAGYTVPPYYDSMIGKL 58
Query: 398 VVWDENRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKD 454
+ + ENR +A+ +MK AL + I G+ TN++ I + ++++F G + ++++
Sbjct: 59 ICYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLG 115
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 123
Score = 110 bits (275), Expect = 3e-29
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 338 RGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKL 397
G++ E RI AE+P + F P + IR+E G EV+ +YD MI+KL
Sbjct: 2 NGYAIECRINAEDPKKNFAPSTR-VIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKL 60
Query: 398 VVWDENRTLALNKMKQALSQYQIAGLDTNINFLINLCSNDHFIQGDIHTGFIDQHKDEL 456
+ W A+ +M+ AL Y+I G+ T I LIN+ F G T ++++H +
Sbjct: 61 ITWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVF 119
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 110 bits (276), Expect = 1e-28
Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 17/203 (8%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K + + KA +P D+ E + E GYP+++K G G +
Sbjct: 1 KWATSVALAKAGLPQPKTALATDREE--ALRLMEAFGYPVVLKP--VIGSWGRLLAXXXX 56
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPR-HIEVQIIGDRYGNYVYLYERDCSVQRR 240
+E F +++Y++ P I V ++G+R +Y
Sbjct: 57 XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTA 116
Query: 241 HQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRL 300
E P + + A G V + S E+N +
Sbjct: 117 RGGQAENCPLTEEVARLSVK----------AAEAVGGGVVAVDLFESERGLLVNEVNHTM 166
Query: 301 QVEHPVSEMITGVDLVQWQLMVA 323
+ ++ S TGVD+ L A
Sbjct: 167 EFKN--SVHTTGVDIPGEILKYA 187
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 116
Score = 100 bits (251), Expect = 5e-26
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 338 RGHSFETRIYAENPYEGFLPGAGNLTHLRPPEHSDTIRIETGVIEGDEVSVHYDPMISKL 397
+GH RI +E+P +GF P G L L + V + D +
Sbjct: 1 KGHCTACRITSEDPNDGFKPSGGTLHELNFRSS-SNVWGYFSVGNNGNIHSFSDSQFGHI 59
Query: 398 VVWDENRTLALNKMKQALSQYQIAG-LDTNINFLINLCSNDHFIQGDIHTGFID 450
+ ENR + M AL + I G T + +LI L + F I TG++D
Sbjct: 60 FAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLD 113
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 99.4 bits (246), Expect = 2e-24
Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 23/216 (10%)
Query: 112 SSEAIRNMGIKSTSKEIMIKAE----VPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVR 167
S E+I N K M+ P E +P+++K
Sbjct: 2 SLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN--HREMLTLPTFPVVVKIGH 59
Query: 168 GGGGKGMRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNY 227
G G V + +F E +I + I VQ I NY
Sbjct: 60 AHSGMGKVKVENHYDFQDIASVVALTQT------YATAEPFIDAKYDIRVQKI---GNNY 110
Query: 228 VYLYERDCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPS 287
S + +S ++ + + V+ +
Sbjct: 111 KAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLW----VDACSEMFGGLDICAVKAVHGK- 165
Query: 288 SGEFYFMEMNT---RLQVEHPVSEMITGVDLVQWQL 320
G+ Y E+ L EH V + DLV ++
Sbjct: 166 DGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 201
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 88.6 bits (218), Expect = 1e-20
Identities = 27/216 (12%), Positives = 63/216 (29%), Gaps = 17/216 (7%)
Query: 114 EAIRNMGIKSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKG 173
E IR + + + ++P + ++ E IGYP ++K V GKG
Sbjct: 3 EGIRRLAAE--------ELQLPTSTYRFADSESL--FREAVADIGYPCIVKPVMSSSGKG 52
Query: 174 MRIVRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYER 233
+R + + +V++E ++ I + + G +
Sbjct: 53 QTFIRSAEQLAQAW--KYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVG 110
Query: 234 DCSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYF 293
+++ + ++ E + V + E F
Sbjct: 111 HRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFG-----VELFVCGDEVIF 165
Query: 294 MEMNTRLQVEHPVSEMITGVDLVQWQLMVASGQELP 329
E++ R V+ + + + G +
Sbjct: 166 SEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVG 201
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 88.3 bits (217), Expect = 1e-20
Identities = 25/208 (12%), Positives = 66/208 (31%), Gaps = 15/208 (7%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
+ T K++ K +P P +++E +R+G ++K GG + +
Sbjct: 2 RLTQKQLFDKLHLPTAPWQLLAERSE--WPAVFDRLGELAIVKRRTGGYDGRGQWRLRAN 59
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQRRH 241
A + ++E+ I + + R + ++ +
Sbjct: 60 ETEQLP---------AECYGECIVEQGINFSGEVSLVG--ARGFDGSTVFYPLTHNLHQD 108
Query: 242 QKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFMEMNTRLQ 301
+ P +++ ++R + + + Y +E + P E+ R+
Sbjct: 109 GILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTP--QGLLINELAPRVH 166
Query: 302 VEHPVSEMITGVDLVQWQLMVASGQELP 329
++ + + L + LP
Sbjct: 167 NSGHWTQNGASISQFELHLRAITDLPLP 194
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 80.3 bits (197), Expect = 1e-17
Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 16/226 (7%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K+ +K+ + + ++P Y + E L G P++IKA GKG+ +
Sbjct: 2 KAFTKDFLARHKIPT-AEYQNFTEVEPAL-AYLREKGAPIVIKADGLAAGKGVIVAMTLE 59
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR-----YGNYVYLYERDCS 236
A + + ++++E+++ + ++ + + D
Sbjct: 60 EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKD 119
Query: 237 VQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDP-----SSGEF 291
+ +PAP ++ + R + T + G
Sbjct: 120 TGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNP 179
Query: 292 YFMEMNTRL-QVEHPVSEMITGVDLVQWQLMVASGQELPLKQEDLQ 336
+E N R +E + DLV+ L + L ++ +
Sbjct: 180 KVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESK---LDEKTSE 222
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 79.8 bits (195), Expect = 2e-17
Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 23/217 (10%)
Query: 122 KSTSKEIMIKAEVPVIPGY-----HGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRI 176
K SK + A +PV P E + + + +G P+++K R G GM
Sbjct: 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60
Query: 177 VRDSANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCS 236
V LR A + + + S V I+G+ + +
Sbjct: 61 VVAENALQDALRLAFQHDEEVLIE-------KWLSGPEFTVAILGEEILPSIRIQPSGTF 113
Query: 237 VQRRHQK---IIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYF 293
+ + G+ + + L + ++ + G ++ ++D G+FY
Sbjct: 114 YDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYL 172
Query: 294 MEMNTRLQVEH----PVSEMITGV---DLVQWQLMVA 323
+E NT + P++ G+ LV L +A
Sbjct: 173 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 209
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 79.3 bits (194), Expect = 3e-17
Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 21/192 (10%)
Query: 122 KSTSKEIMIKAEVPVIPG--YHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRD 179
K+ +KE++ + E N + +G + +KA G G+ V +
Sbjct: 2 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN 61
Query: 180 SANFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDRYGNYVYLYERDCSVQR 239
+ + L + + + + + R +EV +IG+ + Q
Sbjct: 62 AEEYTEALSDSFQYDYKVLIE------EAVNGARELEVGVIGNDQPLVSEIGAHTVPNQG 115
Query: 240 RHQKI------------IEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPS 287
+ +S E + + + + ++F++D
Sbjct: 116 SGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE- 174
Query: 288 SGEFYFMEMNTR 299
+ Y E NT
Sbjct: 175 NNVPYLGEPNTL 186
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 73.2 bits (178), Expect = 3e-15
Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 18/220 (8%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
K +K M K + + + EE+ E+ ++ P +IKA GKG+ I+
Sbjct: 2 KVYAKRFMKKYGIRT-ARFEVAETPEELR-EKIKKFSPPYVIKADGLARGKGVLILDSKE 59
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPRHIEVQIIGDR-------YGNYVYLYERD 234
+ + V++++++ + ++ R +Y L + D
Sbjct: 60 ETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGD 119
Query: 235 CSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFM 294
P + + L + Y G + + G+ Y +
Sbjct: 120 RGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYIL 179
Query: 295 EMNTRL-----QVEHPVSEMITGVDLVQWQLMVASGQELP 329
E N RL +V ++ V L G ++
Sbjct: 180 EYNVRLGDPETEVIVTLNPE----GFVNAVLEGYRGGKME 215
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 66.1 bits (161), Expect = 3e-14
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 647 SDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+ ++ +P+ G V K+LV+ G VK G ++V+ AMKME I + T G +E++
Sbjct: 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD 65
Query: 707 SIQKNQNLVKI 717
++Q Q L+KI
Sbjct: 66 AVQGGQGLIKI 76
Score = 31.8 bits (72), Expect = 0.034
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 645 ALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
A+ +++ +P G V+KVLV+ AV+ G ++ I
Sbjct: 41 AMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 61.3 bits (147), Expect = 3e-11
Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 15/185 (8%)
Query: 122 KSTSKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAVRGGGGKGMRIVRDSA 181
KS + + A + + + + A YP+ +K R G G++ V +
Sbjct: 2 KSLTYIVAKNAGIATPAFWVINKDDRPV----AATFTYPVFVKPARSGSSFGVKKVNSAD 57
Query: 182 NFLAQLRSAQRESQSAFNDSKVLLEKYIQSPR-------HIEVQIIGDRYGNYVYLYERD 234
+ SA++ + V + + EV I +YG + E +
Sbjct: 58 ELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVE 117
Query: 235 CSVQRRHQKIIEEAPAPGISSEFRSRLGSTGVQVARAVRYHNAGTVEFIMDPSSGEFYFM 294
+ I A +E R R+ T ++ + + V+ + +G
Sbjct: 118 PEKGSENAVITVPADLS---AEERGRIQETVKKIYKTLGCRGLARVDMFLQD-NGRIVLN 173
Query: 295 EMNTR 299
E+NT
Sbjct: 174 EVNTL 178
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 55.0 bits (132), Expect = 3e-10
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 652 VVSPMPGMV-------DKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAA 704
V SPM G K ++ GQ V GD + ++ AMKM I + SG ++ I +
Sbjct: 7 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66
Query: 705 GQSIQKNQNLVKI 717
GQ ++ ++ LV I
Sbjct: 67 GQPVEFDEPLVVI 79
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 52.1 bits (125), Expect = 3e-09
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G + K V+PG V D + + K I S G + EI G Q L+ +
Sbjct: 16 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 75
Score = 34.0 bits (78), Expect = 0.006
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 652 VVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
+ SP+ G V ++LV G G ++ +
Sbjct: 47 IPSPVKGKVLEILVPEGTVATVGQTLITL 75
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 52.1 bits (125), Expect = 4e-09
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V + V+ G V D I + + K ITS G+I++++Y + LV I
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 50.6 bits (121), Expect = 9e-09
Identities = 11/65 (16%), Positives = 34/65 (52%)
Query: 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLV 715
G V ++LV+ G ++ ++V+ + K + S +G+++ + G +++ ++
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAII 70
Query: 716 KIVPS 720
++ P+
Sbjct: 71 ELEPA 75
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 49.4 bits (118), Expect = 2e-08
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 651 KVVSPMPGM----VDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+V P G V +V+V+ G V ++ + K + + +G+++E+ G
Sbjct: 4 EVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD 63
Query: 707 SIQKNQNLVKI 717
++ ++
Sbjct: 64 KVKTGSLIMIF 74
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 48.6 bits (116), Expect = 5e-08
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 652 VVSPMPGMVD-----KVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQ 706
+ P G + V V G + D ++ + K + + +G+++E+ G
Sbjct: 5 LKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD 64
Query: 707 SIQKNQNLVKI 717
I + +V +
Sbjct: 65 KISEGGLIVVV 75
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 48.2 bits (115), Expect = 5e-08
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
V +PG AV + ++ I K+ + + GI++ + G ++ Q L ++
Sbjct: 17 ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 47.5 bits (113), Expect = 1e-07
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 658 GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIEEIFYAAGQSIQKNQNLVKI 717
G V +PG+AVK + I+ I K+ + + G+I EI G ++ + L K+
Sbjct: 16 GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 41.0 bits (96), Expect = 4e-05
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 647 SDPSKVVSPMP--------GMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGIIE 698
S P + +P G V + + G+ + GD + I K G +
Sbjct: 1 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLA 60
Query: 699 EIFYAAG-QSIQKNQNLVKIVPS 720
+I G + + L IV
Sbjct: 61 KILVPEGTRDVPLGTPLCIIVEK 83
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 35.1 bits (79), Expect = 0.019
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 632 LPGKSYSLEPEDSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVI 680
LPG+ A +V + G++ K L + G VK G + I
Sbjct: 6 LPGR---TNAFRIA-----EVRPQVNGIILKRLFKEGSDVKAGQQLYQI 46
Score = 30.8 bits (68), Expect = 0.40
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 689 ITSGTSGIIEEIFYAAGQSIQKNQNLVKIVPS 720
+ +GII + + G ++ Q L +I P+
Sbjct: 18 VRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 49
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 31.4 bits (71), Expect = 0.099
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 11 ILIANRGEIACRIMRTAKKMGIRVVSVYSDIDADALHVKMADEAYRLEGKSSLDTYLNQA 70
+++ GE+ + +++G+ V++V DA A+HV A ++ + L+
Sbjct: 14 VMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHV--AHRSH-------VINMLDGD 64
Query: 71 KILDIAVRSQCQAIHPGYGFLSENAEFANAVEGNRLIFVGPSSEAIR 117
+ + + I P + + +E + V P + A +
Sbjct: 65 ALRRVVELEKPHYIVPEIEAI--ATDMLIQLE-EEGLNVVPCARATK 108
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 28.9 bits (64), Expect = 0.92
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 39 SDIDADALHVKMADEAYRLEGKSSLDTYLNQAK----ILDI-AVRS-QCQAIHPGYGFLS 92
+D DAL +M + +S LD +L QA +L R+ + G L
Sbjct: 3 NDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELL 62
Query: 93 ENAEFANAVEGNRLIFVGPSSEAIRNMGIKSTSKEIMIKAEVPV--IPGYHGEDQNEEIL 150
EF + + + S G+ ++ + G H + ++
Sbjct: 63 R--EFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM 120
Query: 151 MEQAE 155
E
Sbjct: 121 RGLVE 125
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 29.8 bits (67), Expect = 1.1
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 643 DSALSDPSKVVSPMPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSG----TSGIIE 698
D+ + P M D VL+ + DP+ + AMK+ + +G +G I
Sbjct: 183 DAGIGSPKDAAYAMELGADGVLLNTAVS-GADDPVKMARAMKL--AVEAGRLSYEAGRIP 239
Query: 699 EIFYAAGQS 707
Y S
Sbjct: 240 LKQYGTASS 248
>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue
factor {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 28.4 bits (63), Expect = 1.2
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 540 FRMNHSHVKTVQIQHL-----NKEYNVQVTLSAHTYRVSIRGDPSSELCI 584
+ KT + L + Y V + V+ + S C+
Sbjct: 67 YWSGKKTAKTNTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVECM 116
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 29.2 bits (64), Expect = 1.8
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 125 SKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGYPLMIKAV 166
SK++M V V + + NE +E A+R+ ++
Sbjct: 9 SKKLMSDNGVKVQRFFVADTANE--ALEAAKRLNAKEIVLKA 48
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 29.1 bits (64), Expect = 1.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 125 SKEIMIKAEVPVIPGYHGEDQNEEILMEQAERIGY-PLMIKAVRGGGGKG 173
+K++ + +P GY E E A +IG P ++K GG+G
Sbjct: 8 AKQLFARYGLPAPVGYACTTPRE--AEEAASKIGAGPWVVKCQVHAGGRG 55
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 26.5 bits (59), Expect = 2.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 12 LIANRGEIACR-IMRTAKKMGIRVV 35
L AN E A + I TAK MGI VV
Sbjct: 46 LNANSLEAAMKIIEGTAKSMGIEVV 70
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 27.4 bits (61), Expect = 4.2
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 656 MPGMVDKVLVQPGQAVKTGDPIMVIIAMKMEYVITSGTSGII----------EEIFYAAG 705
+ G K + + GQ VK GD +I + + S + +E+ +G
Sbjct: 80 LKGEGFKRIAEEGQRVKVGDT---VIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG 136
Query: 706 QSIQKNQNLVKI 717
+++I
Sbjct: 137 SVTVGETPVIRI 148
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 27.8 bits (61), Expect = 4.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 315 LVQWQLMVASGQELPLKQEDLQLRGHSFETRI 346
LV+ +L + +G + LK E S + R
Sbjct: 98 LVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRP 129
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 26.8 bits (59), Expect = 8.9
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 302 VEHPVSEMITGVDLVQWQLMVAS--GQELPLKQEDLQLRGHSFETRIYAENPYEGF 355
V H + + G D + WQ G+ + ++ + LR H + +E YE F
Sbjct: 128 VNHIKNNALAGQDYIFWQFYKCEECGKYVDIENLEAHLREHGIKLHEKSEEHYEVF 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,563,445
Number of extensions: 120473
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 52
Length of query: 720
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 628
Effective length of database: 1,144,436
Effective search space: 718705808
Effective search space used: 718705808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)