BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15255
         (199 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
           Cargo (Kap60p) And Rangtp
          Length = 960

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 71  VARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 130
           + R  +D+ GN+L P      +K +I+ L+ +  N N++ +I +A + +A    D    +
Sbjct: 65  IKRKWVDENGNHLLPANNVELIKKEIVPLMISLPN-NLQVQIGEAISSIA----DSDFPD 119

Query: 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSV 161
            WP  L  L    ++D+    +  L +  S+
Sbjct: 120 RWPTLLSDLASRLSNDDMVTNKGVLTVAHSI 150


>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
 pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
          Length = 968

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 71  VARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 130
           + R  +D+ GN+L P      +K +I+ L+ +  N N++ +I +A + +A    D    +
Sbjct: 65  IKRKWVDENGNHLLPANNVELIKKEIVPLMISLPN-NLQVQIGEAISSIA----DSDFPD 119

Query: 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSV 161
            WP  L  L    ++D+    +  L +  S+
Sbjct: 120 RWPTLLSDLASRLSNDDMVTNKGVLTVAHSI 150


>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
           NTNHA
 pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
           NTNHA
          Length = 1196

 Score = 26.9 bits (58), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 130 NLWPEFLQFLFQCANSDNTTLKE 152
           N++P+F+ F+ QC N+ N   KE
Sbjct: 762 NIYPKFISFMEQCINNINIKTKE 784


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,976,476
Number of Sequences: 62578
Number of extensions: 170418
Number of successful extensions: 390
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 13
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)