BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15255
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
Length = 1097
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGRSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+KICD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCM 181
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4
Length = 1097
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+K+CD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCM 181
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3
Length = 1105
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 48/184 (26%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNI 60
++ +++ E RQM+A LLR++ S+ F E+Y
Sbjct: 54 LDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYP-------------------------- 87
Query: 61 RRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120
NL PE +Q ++K ++IL ++ + ++R+K+CD A +A
Sbjct: 88 ---------------------NLPPE-VQRDVKIELILAVKLETHASMRKKLCDIFAVLA 125
Query: 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180
RNLID++G N WPE L+FL +S N L E AL +F P IFGNQ+ L +IK++L
Sbjct: 126 RNLIDESGTNHWPEGLKFLIDSIHSKNVVLWEVALHVFWHFPGIFGNQDRHDLDIIKRLL 185
Query: 181 QQCL 184
QC+
Sbjct: 186 DQCI 189
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2
Length = 1105
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 50 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDND 106
LL N ++ AA + R L+ ++P +Q ++K ++IL ++ +
Sbjct: 52 FLLDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYPNLPADVQRDVKIELILAVKLETHA 111
Query: 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166
++R+K+CD A +ARNLID+ G N WPE L+FL S N L E AL +F P IFG
Sbjct: 112 SMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVFWHFPGIFG 171
Query: 167 NQESTYLVVIKQMLQQCL 184
QE L +IK++L QC+
Sbjct: 172 TQERHDLDIIKRLLDQCI 189
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sal3 PE=3 SV=1
Length = 1095
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT 148
+ +L+SQ++ +R K+CD AE+AR++ D G WPE + +F NS +
Sbjct: 96 KQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQGE--WPELINVIFNAVNSPDE 153
Query: 149 TLKESALRLFTSVPEIFGNQEST 171
+ +ES R TS+P + Q+S
Sbjct: 154 SFRESVFRTITSLPRLLSGQDSA 176
>sp|P32337|IMB3_YEAST Importin subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSE1 PE=1 SV=2
Length = 1089
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162
D+IR K+ DA AE + DD WPE LQ L + S N +ES+ R+ T+VP
Sbjct: 116 DSIRHKLSDAIAECVQ---DDLPA--WPELLQALIESLKSGNPNFRESSFRILTTVP 167
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum
GN=DDB_G0291650 PE=3 SV=1
Length = 1067
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID--DAGN---NLWP 85
++Y+ + + L + I+L++T ++ +R + R L++ D+GN L P
Sbjct: 26 QLYADYKNHQPDQLVNSFIVLIRTSQDELLR----SYPPVLLRTLVNGNDSGNILKGLKP 81
Query: 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS 145
E L LK++++ ++ ++IR I + A +A L+ + WPE L F+ + ++S
Sbjct: 82 ETLVT-LKTELMFAVREEPKNHIRHSILNVIAILAIQLVPEQK---WPEILSFIIESSSS 137
Query: 146 DNTTLKESALRLFTSV 161
L+ES+ L ++
Sbjct: 138 PEENLRESSFYLIGAI 153
>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1
SV=2
Length = 598
Score = 37.0 bits (84), Expect = 0.080, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 63 KICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDA 115
K+C+ E ++ + L ++ QNNL QI ++ Q D NIRR++ DA
Sbjct: 79 KVCEKVKEKGLTNYNEVADELVADYFQNNLIKQIDVVKQEYDMKNIRRRVYDA 131
>sp|P97259|MGT5A_CRIGR Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Cricetulus
griseus GN=MGAT5 PE=2 SV=1
Length = 740
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 32/129 (24%)
Query: 59 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAE 118
++ ++ A AE RN++D + + +LK + +LL DNI ++I ++
Sbjct: 52 DLSKRYIKALAEENRNVVDGPYAGVMTAY---DLKKTLAVLL-----DNILQRIGKLESK 103
Query: 119 VARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQ 178
V NL++ G ANS N+T T+VP + ++ + +I
Sbjct: 104 V-DNLVNGTG--------------ANSTNST---------TAVPSLVSLEKISVADIING 139
Query: 179 MLQQCLLPP 187
+ ++C+LPP
Sbjct: 140 VQEKCVLPP 148
>sp|Q08834|MGT5A_RAT Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Rattus
norvegicus GN=Mgat5 PE=1 SV=1
Length = 740
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 32/129 (24%)
Query: 59 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAE 118
++ ++ A AE RN++D + + +LK + +LL DNI ++I ++
Sbjct: 52 DLSKRYIKALAEENRNVVDGPYAGVMTAY---DLKKTLAVLL-----DNILQRIGKLESK 103
Query: 119 VARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQ 178
V NL++ G ANS N+T T+VP + ++ +I
Sbjct: 104 V-DNLVNGTG--------------ANSTNST---------TAVPSLVSLEKINVADIING 139
Query: 179 MLQQCLLPP 187
+ ++C+LPP
Sbjct: 140 VQEKCVLPP 148
>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2
Length = 445
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 63 KICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDA 115
K+C+ E + ++ ++L E ++NN CD NIRR++ DA
Sbjct: 176 KVCEKVEEKGKTTYNEVADDLVSEEMKNNAYDN------NCDQKNIRRRVYDA 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,807,783
Number of Sequences: 539616
Number of extensions: 2328177
Number of successful extensions: 5469
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5447
Number of HSP's gapped (non-prelim): 37
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)