Query psy15255
Match_columns 199
No_of_seqs 157 out of 923
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 16:20:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171|consensus 99.9 3.1E-24 6.6E-29 193.6 17.8 178 4-197 44-227 (1075)
2 KOG2023|consensus 99.9 2.1E-24 4.5E-29 185.6 12.5 183 5-199 56-279 (885)
3 KOG1241|consensus 99.8 3.3E-19 7.1E-24 155.6 15.4 193 2-199 42-282 (859)
4 KOG2171|consensus 99.8 5.5E-19 1.2E-23 160.0 14.1 165 19-198 8-181 (1075)
5 COG5215 KAP95 Karyopherin (imp 99.7 9E-16 2E-20 131.1 17.8 193 2-199 46-286 (858)
6 KOG1241|consensus 99.3 2.5E-11 5.5E-16 106.9 12.4 174 17-198 4-196 (859)
7 KOG2023|consensus 99.1 1.3E-09 2.9E-14 95.2 12.7 126 66-198 66-196 (885)
8 PF12755 Vac14_Fab1_bd: Vacuol 99.0 2.2E-09 4.8E-14 73.5 9.4 87 109-197 3-89 (97)
9 KOG2274|consensus 99.0 1.4E-08 3E-13 91.3 16.0 151 4-166 45-207 (1005)
10 KOG1992|consensus 98.8 2.7E-07 5.9E-12 82.6 15.8 180 2-186 44-299 (960)
11 PF12348 CLASP_N: CLASP N term 98.8 6.8E-07 1.5E-11 70.4 16.8 174 6-197 16-198 (228)
12 PF03810 IBN_N: Importin-beta 98.7 3.1E-08 6.7E-13 64.8 4.6 53 2-54 21-77 (77)
13 COG5215 KAP95 Karyopherin (imp 98.6 1.6E-06 3.5E-11 75.3 14.4 161 30-198 26-200 (858)
14 KOG1993|consensus 98.6 1.7E-06 3.8E-11 77.3 14.3 115 1-125 38-156 (978)
15 PRK09687 putative lyase; Provi 98.5 3.8E-06 8.3E-11 68.4 13.8 119 47-197 94-213 (280)
16 KOG1991|consensus 98.5 2.4E-06 5.3E-11 77.9 13.0 62 1-63 42-108 (1010)
17 PRK09687 putative lyase; Provi 98.4 1E-05 2.3E-10 65.9 13.2 124 46-197 57-180 (280)
18 PF13646 HEAT_2: HEAT repeats; 98.2 9.5E-06 2.1E-10 54.0 8.1 81 96-197 4-84 (88)
19 PF13513 HEAT_EZ: HEAT-like re 98.2 4.1E-06 8.8E-11 51.1 5.4 49 148-197 1-49 (55)
20 KOG0211|consensus 98.2 3.4E-05 7.4E-10 70.2 12.3 171 11-196 193-375 (759)
21 PF01602 Adaptin_N: Adaptin N 98.1 0.00031 6.7E-09 61.8 17.6 161 8-198 53-214 (526)
22 PF12717 Cnd1: non-SMC mitotic 98.1 1.6E-05 3.5E-10 60.5 8.0 86 105-199 1-86 (178)
23 PF12717 Cnd1: non-SMC mitotic 98.1 0.00013 2.7E-09 55.6 12.5 112 57-183 1-113 (178)
24 PRK13800 putative oxidoreducta 98.1 0.00019 4.2E-09 67.4 15.6 51 137-197 841-891 (897)
25 PF13646 HEAT_2: HEAT repeats; 98.1 0.00012 2.7E-09 48.5 10.7 85 47-159 3-88 (88)
26 COG5657 CSE1 CAS/CSE protein i 98.0 0.00036 7.9E-09 63.7 16.1 110 3-123 44-154 (947)
27 PRK13800 putative oxidoreducta 98.0 0.00015 3.2E-09 68.2 13.4 134 9-197 726-859 (897)
28 PF02985 HEAT: HEAT repeat; I 98.0 1.4E-05 3.1E-10 42.8 4.0 30 135-164 1-30 (31)
29 KOG1824|consensus 97.9 0.00016 3.5E-09 66.3 12.2 141 39-197 853-1028(1233)
30 cd00020 ARM Armadillo/beta-cat 97.9 4.9E-05 1.1E-09 52.9 7.0 100 96-198 12-113 (120)
31 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.00031 6.8E-09 48.1 10.4 70 84-156 21-90 (97)
32 PF12460 MMS19_C: RNAPII trans 97.9 0.00049 1.1E-08 59.2 13.9 135 43-182 271-413 (415)
33 PF01602 Adaptin_N: Adaptin N 97.8 0.00045 9.7E-09 60.7 13.4 114 37-163 108-221 (526)
34 PF08389 Xpo1: Exportin 1-like 97.8 0.00021 4.5E-09 52.0 9.6 126 58-198 2-146 (148)
35 PF13513 HEAT_EZ: HEAT-like re 97.8 1.7E-05 3.7E-10 48.3 3.1 55 106-161 1-55 (55)
36 KOG1240|consensus 97.8 0.00062 1.3E-08 63.9 13.7 176 10-197 475-677 (1431)
37 COG5181 HSH155 U2 snRNP splice 97.8 0.0015 3.2E-08 57.9 15.2 153 42-197 603-862 (975)
38 KOG1242|consensus 97.8 0.00097 2.1E-08 58.6 14.0 144 40-198 171-317 (569)
39 PF10508 Proteasom_PSMB: Prote 97.8 0.0011 2.3E-08 58.6 14.4 148 41-198 75-224 (503)
40 cd00020 ARM Armadillo/beta-cat 97.8 0.00013 2.8E-09 50.8 7.0 108 44-163 8-120 (120)
41 PF10508 Proteasom_PSMB: Prote 97.8 0.00071 1.5E-08 59.7 13.1 143 8-163 88-231 (503)
42 KOG2956|consensus 97.8 0.0012 2.7E-08 56.5 13.8 154 3-176 337-491 (516)
43 KOG0213|consensus 97.7 0.0024 5.1E-08 57.8 15.4 153 42-197 798-1057(1172)
44 KOG0166|consensus 97.7 0.00066 1.4E-08 59.2 11.7 147 39-197 233-385 (514)
45 COG5101 CRM1 Importin beta-rel 97.7 0.0042 9E-08 55.3 16.0 185 3-193 54-251 (1053)
46 PF12348 CLASP_N: CLASP N term 97.7 0.0016 3.5E-08 51.1 12.6 115 42-168 93-211 (228)
47 KOG2274|consensus 97.5 0.0013 2.9E-08 60.2 11.6 133 8-167 15-161 (1005)
48 PF08167 RIX1: rRNA processing 97.5 0.019 4.1E-07 43.1 16.0 143 32-184 14-164 (165)
49 PTZ00429 beta-adaptin; Provisi 97.5 0.0082 1.8E-07 55.3 16.4 130 9-164 80-209 (746)
50 KOG1967|consensus 97.5 0.001 2.2E-08 61.0 10.1 101 96-198 872-975 (1030)
51 KOG0211|consensus 97.5 0.0034 7.4E-08 57.5 13.3 125 56-197 530-656 (759)
52 KOG1248|consensus 97.4 0.0085 1.8E-07 56.5 15.4 153 36-199 690-850 (1176)
53 KOG1967|consensus 97.3 0.0015 3.3E-08 59.9 9.3 108 83-198 906-1017(1030)
54 KOG1943|consensus 97.2 0.011 2.3E-07 55.4 13.8 146 39-197 337-492 (1133)
55 KOG1824|consensus 97.2 0.013 2.8E-07 54.4 14.1 135 40-185 171-308 (1233)
56 PF04510 DUF577: Family of unk 97.2 0.0086 1.9E-07 44.9 10.8 112 43-166 3-120 (174)
57 KOG1059|consensus 97.2 0.02 4.3E-07 51.7 14.7 168 11-198 158-358 (877)
58 KOG0166|consensus 97.2 0.011 2.3E-07 51.8 12.5 174 9-198 122-301 (514)
59 PF04510 DUF577: Family of unk 97.1 0.013 2.8E-07 44.0 11.0 96 93-193 5-102 (174)
60 PF12460 MMS19_C: RNAPII trans 97.1 0.03 6.5E-07 48.3 15.1 148 43-198 189-387 (415)
61 KOG0212|consensus 97.1 0.0021 4.5E-08 56.3 7.8 66 130-196 80-145 (675)
62 PF13251 DUF4042: Domain of un 97.1 0.0038 8.3E-08 47.6 8.5 137 60-197 2-166 (182)
63 PTZ00429 beta-adaptin; Provisi 97.1 0.012 2.6E-07 54.2 12.9 91 96-197 110-200 (746)
64 PF12719 Cnd3: Nuclear condens 97.1 0.0082 1.8E-07 49.4 10.7 96 96-198 32-136 (298)
65 KOG0213|consensus 97.1 0.0076 1.6E-07 54.6 10.7 104 84-195 461-572 (1172)
66 COG5096 Vesicle coat complex, 97.0 0.012 2.5E-07 53.9 11.9 104 81-197 83-187 (757)
67 TIGR02270 conserved hypothetic 97.0 0.016 3.4E-07 49.9 12.2 112 45-197 88-199 (410)
68 KOG1060|consensus 97.0 0.035 7.6E-07 50.6 14.4 129 48-196 40-200 (968)
69 PF04826 Arm_2: Armadillo-like 96.9 0.0085 1.8E-07 48.2 9.1 136 46-198 15-156 (254)
70 PF13251 DUF4042: Domain of un 96.9 0.015 3.3E-07 44.4 10.0 152 13-164 2-175 (182)
71 KOG1949|consensus 96.9 0.021 4.6E-07 51.5 12.1 147 42-197 173-323 (1005)
72 KOG1242|consensus 96.8 0.045 9.7E-07 48.5 13.5 127 44-187 217-345 (569)
73 PF05004 IFRD: Interferon-rela 96.8 0.17 3.8E-06 41.9 16.2 176 11-198 57-250 (309)
74 PF08389 Xpo1: Exportin 1-like 96.8 0.0095 2.1E-07 43.2 7.8 86 107-197 3-107 (148)
75 KOG1020|consensus 96.7 0.011 2.4E-07 57.1 9.3 94 96-198 821-914 (1692)
76 COG5656 SXM1 Importin, protein 96.7 0.015 3.2E-07 52.8 9.4 111 2-165 42-157 (970)
77 KOG4653|consensus 96.6 0.078 1.7E-06 48.9 13.6 171 9-197 739-910 (982)
78 KOG2160|consensus 96.5 0.062 1.4E-06 44.7 11.7 110 48-167 129-244 (342)
79 KOG1020|consensus 96.4 0.12 2.7E-06 50.3 14.4 137 42-197 815-952 (1692)
80 KOG1062|consensus 96.4 0.026 5.7E-07 51.4 9.4 141 33-183 242-397 (866)
81 PF10274 ParcG: Parkin co-regu 96.4 0.041 8.9E-07 41.9 9.1 85 96-181 43-130 (183)
82 COG5096 Vesicle coat complex, 96.4 0.14 3.1E-06 47.0 14.0 114 32-164 81-196 (757)
83 KOG2032|consensus 96.3 0.11 2.5E-06 45.1 12.3 69 130-198 254-322 (533)
84 KOG2032|consensus 96.3 0.034 7.4E-07 48.2 9.2 94 102-197 268-363 (533)
85 KOG2956|consensus 96.3 0.3 6.6E-06 42.3 14.7 142 39-197 325-469 (516)
86 COG5181 HSH155 U2 snRNP splice 96.2 0.02 4.4E-07 51.0 7.5 86 103-196 292-378 (975)
87 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.043 9.2E-07 38.9 7.4 66 96-163 48-115 (119)
88 COG5218 YCG1 Chromosome conden 96.1 0.17 3.7E-06 45.1 12.3 105 85-197 86-191 (885)
89 COG1413 FOG: HEAT repeat [Ener 96.0 0.63 1.4E-05 38.6 15.5 56 133-197 179-234 (335)
90 KOG0915|consensus 96.0 0.26 5.6E-06 48.2 14.2 156 30-192 1019-1188(1702)
91 PF08569 Mo25: Mo25-like; Int 96.0 0.43 9.4E-06 40.0 14.0 139 57-197 89-275 (335)
92 PLN03200 cellulose synthase-in 96.0 0.54 1.2E-05 48.0 16.6 135 47-197 534-672 (2102)
93 KOG0212|consensus 95.9 0.14 3E-06 45.3 11.0 165 12-196 15-187 (675)
94 KOG1243|consensus 95.7 0.42 9.1E-06 43.3 13.4 146 36-194 266-426 (690)
95 TIGR02270 conserved hypothetic 95.7 0.16 3.6E-06 43.7 10.6 79 96-198 91-169 (410)
96 PF02985 HEAT: HEAT repeat; I 95.6 0.038 8.1E-07 29.2 4.3 29 45-74 2-30 (31)
97 PLN03200 cellulose synthase-in 95.6 0.15 3.1E-06 51.8 11.1 139 46-197 612-756 (2102)
98 PF11865 DUF3385: Domain of un 95.5 0.65 1.4E-05 34.6 12.3 120 43-164 10-158 (160)
99 KOG1820|consensus 95.5 0.89 1.9E-05 42.5 15.1 125 56-198 307-436 (815)
100 KOG1077|consensus 95.5 0.68 1.5E-05 42.2 13.7 173 9-199 381-581 (938)
101 PF09324 DUF1981: Domain of un 95.4 0.13 2.9E-06 34.2 7.5 62 98-160 24-85 (86)
102 KOG2025|consensus 95.4 0.054 1.2E-06 49.0 7.0 95 96-197 90-185 (892)
103 KOG0567|consensus 95.4 0.2 4.4E-06 40.3 9.5 87 47-160 191-277 (289)
104 KOG2160|consensus 95.4 0.9 1.9E-05 38.0 13.5 146 9-165 136-284 (342)
105 PF04826 Arm_2: Armadillo-like 95.2 0.12 2.6E-06 41.6 7.7 97 96-198 17-117 (254)
106 PF05004 IFRD: Interferon-rela 95.1 1.4 3.1E-05 36.5 14.2 144 38-187 124-285 (309)
107 KOG2933|consensus 95.1 0.74 1.6E-05 38.0 11.9 125 47-186 133-259 (334)
108 PF10363 DUF2435: Protein of u 95.1 0.25 5.4E-06 33.4 7.9 68 98-168 10-77 (92)
109 KOG0392|consensus 95.0 0.51 1.1E-05 45.5 12.2 148 42-199 76-231 (1549)
110 PF11865 DUF3385: Domain of un 94.9 0.32 6.9E-06 36.3 9.0 105 83-193 7-145 (160)
111 KOG2062|consensus 94.7 0.27 5.7E-06 44.9 9.3 123 43-187 555-677 (929)
112 KOG1240|consensus 94.7 0.32 7E-06 46.6 10.2 145 38-199 573-719 (1431)
113 KOG1061|consensus 94.6 0.47 1E-05 43.3 10.7 143 40-198 118-261 (734)
114 KOG1248|consensus 94.6 3.4 7.3E-05 39.8 16.2 159 30-195 722-888 (1176)
115 KOG1949|consensus 94.5 0.56 1.2E-05 42.8 10.7 160 30-197 112-284 (1005)
116 KOG2025|consensus 94.5 0.88 1.9E-05 41.5 11.8 108 39-160 81-190 (892)
117 KOG2149|consensus 94.5 0.21 4.5E-06 42.4 7.6 99 98-199 65-164 (393)
118 PF12530 DUF3730: Protein of u 94.5 1.9 4.1E-05 34.2 12.9 121 62-198 102-232 (234)
119 PF08623 TIP120: TATA-binding 94.4 0.09 1.9E-06 39.6 4.9 76 105-184 40-115 (169)
120 KOG1991|consensus 94.4 1.8 4E-05 40.8 14.1 143 39-187 406-559 (1010)
121 PF12830 Nipped-B_C: Sister ch 94.4 0.92 2E-05 34.7 10.6 70 103-177 19-89 (187)
122 PF08064 UME: UME (NUC010) dom 94.4 1.1 2.4E-05 31.0 11.5 77 104-183 27-104 (107)
123 PF13001 Ecm29: Proteasome sta 94.4 0.22 4.7E-06 44.1 8.0 93 104-199 386-482 (501)
124 KOG0567|consensus 94.4 1.2 2.5E-05 36.0 11.2 57 96-164 192-250 (289)
125 PF05918 API5: Apoptosis inhib 94.4 2.8 6.1E-05 37.5 14.7 151 7-186 32-189 (556)
126 PF04118 Dopey_N: Dopey, N-ter 94.3 2.1 4.5E-05 35.5 13.0 92 96-187 59-150 (307)
127 COG5218 YCG1 Chromosome conden 94.1 1.4 2.9E-05 39.7 12.1 106 41-159 89-195 (885)
128 KOG1837|consensus 94.1 1.8 3.9E-05 42.8 13.8 144 13-170 1470-1618(1621)
129 KOG0915|consensus 94.0 0.29 6.3E-06 47.9 8.4 92 102-198 1008-1103(1702)
130 KOG1992|consensus 94.0 2.4 5.3E-05 39.4 13.7 109 45-162 39-154 (960)
131 PF12719 Cnd3: Nuclear condens 94.0 2.1 4.7E-05 35.1 12.6 108 42-162 26-142 (298)
132 PLN03076 ARF guanine nucleotid 94.0 3.4 7.4E-05 42.1 15.8 114 44-165 1138-1255(1780)
133 KOG1993|consensus 93.9 0.53 1.1E-05 43.4 9.4 117 43-168 32-157 (978)
134 KOG2020|consensus 93.9 1.3 2.8E-05 42.6 12.3 73 10-90 58-138 (1041)
135 KOG2021|consensus 93.8 5.7 0.00012 36.8 16.4 153 33-198 71-253 (980)
136 KOG1517|consensus 93.6 1.3 2.9E-05 42.1 11.7 56 105-164 613-672 (1387)
137 PF12765 Cohesin_HEAT: HEAT re 93.6 0.17 3.7E-06 28.9 3.9 28 131-158 15-42 (42)
138 COG5064 SRP1 Karyopherin (impo 93.6 0.89 1.9E-05 38.2 9.4 140 46-197 160-306 (526)
139 cd08050 TAF6 TATA Binding Prot 93.5 1.4 2.9E-05 37.2 10.8 74 114-187 235-321 (343)
140 KOG4413|consensus 93.4 0.24 5.3E-06 41.3 6.0 70 128-198 76-150 (524)
141 KOG0414|consensus 93.4 3.6 7.8E-05 39.7 14.1 146 14-166 269-431 (1251)
142 PF12765 Cohesin_HEAT: HEAT re 93.3 0.093 2E-06 30.0 2.5 40 157-199 2-41 (42)
143 COG5240 SEC21 Vesicle coat com 93.2 2.6 5.6E-05 37.9 12.1 48 146-196 499-546 (898)
144 PF10274 ParcG: Parkin co-regu 93.0 0.44 9.5E-06 36.4 6.5 67 131-198 35-102 (183)
145 KOG1060|consensus 93.0 1.8 3.9E-05 40.1 11.2 99 47-164 112-210 (968)
146 PF01347 Vitellogenin_N: Lipop 92.9 2.4 5.2E-05 38.3 12.3 140 38-197 427-581 (618)
147 PF03224 V-ATPase_H_N: V-ATPas 92.9 1.6 3.6E-05 36.0 10.3 114 43-163 55-179 (312)
148 PF11698 V-ATPase_H_C: V-ATPas 92.8 1.2 2.6E-05 31.5 8.0 85 30-121 27-115 (119)
149 PF05918 API5: Apoptosis inhib 92.7 0.76 1.6E-05 41.1 8.4 75 103-186 33-107 (556)
150 PF00514 Arm: Armadillo/beta-c 92.5 0.31 6.8E-06 27.2 4.0 28 135-162 13-40 (41)
151 KOG1062|consensus 92.5 2.9 6.2E-05 38.7 11.8 17 10-26 307-323 (866)
152 PF10363 DUF2435: Protein of u 92.4 0.61 1.3E-05 31.5 5.9 61 136-198 5-65 (92)
153 KOG4224|consensus 92.3 0.27 5.9E-06 41.5 4.9 92 103-196 178-271 (550)
154 COG5116 RPN2 26S proteasome re 92.3 1.1 2.4E-05 40.1 8.7 122 44-187 552-674 (926)
155 KOG0392|consensus 92.3 0.73 1.6E-05 44.6 8.1 109 47-166 820-928 (1549)
156 COG5098 Chromosome condensatio 92.1 1.2 2.7E-05 40.7 8.9 100 96-198 304-408 (1128)
157 KOG1243|consensus 91.9 0.24 5.2E-06 44.8 4.4 163 14-197 344-507 (690)
158 KOG0168|consensus 91.9 1 2.3E-05 41.9 8.4 74 95-168 171-246 (1051)
159 KOG2062|consensus 91.5 0.87 1.9E-05 41.8 7.4 54 103-165 566-620 (929)
160 KOG4653|consensus 91.4 12 0.00026 35.2 14.5 129 57-197 819-956 (982)
161 COG1413 FOG: HEAT repeat [Ener 91.4 2.2 4.7E-05 35.3 9.5 91 44-163 44-135 (335)
162 smart00638 LPD_N Lipoprotein N 91.4 4.5 9.9E-05 36.3 12.1 138 39-197 390-537 (574)
163 PF08506 Cse1: Cse1; InterPro 91.3 6.8 0.00015 33.4 12.4 150 30-197 204-367 (370)
164 PF08167 RIX1: rRNA processing 91.0 5.2 0.00011 29.9 10.4 90 96-186 30-127 (165)
165 COG5657 CSE1 CAS/CSE protein i 90.8 2.9 6.4E-05 39.2 10.1 110 44-166 37-155 (947)
166 KOG0803|consensus 90.5 2.2 4.8E-05 41.9 9.5 94 103-197 52-145 (1312)
167 KOG1820|consensus 90.1 13 0.00027 35.1 13.8 72 96-168 376-448 (815)
168 PF08064 UME: UME (NUC010) dom 90.1 1.8 4E-05 29.9 6.6 65 131-198 8-76 (107)
169 PF10521 DUF2454: Protein of u 90.0 9.3 0.0002 31.1 15.2 136 47-187 123-277 (282)
170 KOG2933|consensus 89.9 10 0.00022 31.5 11.6 95 95-197 130-226 (334)
171 KOG4224|consensus 89.8 1.3 2.8E-05 37.6 6.5 68 96-164 213-281 (550)
172 KOG2229|consensus 89.5 15 0.00032 32.7 13.4 127 57-199 33-160 (616)
173 PF12530 DUF3730: Protein of u 89.3 9.5 0.00021 30.2 14.0 35 130-164 117-152 (234)
174 PF01603 B56: Protein phosphat 89.2 14 0.0003 31.9 16.7 53 146-199 267-320 (409)
175 KOG0414|consensus 89.1 8.4 0.00018 37.4 11.9 100 96-198 317-421 (1251)
176 smart00802 UME Domain in UVSB 88.9 6.1 0.00013 27.4 11.9 72 107-183 30-104 (107)
177 KOG1525|consensus 88.6 13 0.00028 36.8 13.0 85 109-199 239-323 (1266)
178 KOG0413|consensus 88.1 2 4.4E-05 40.8 7.1 89 99-196 976-1064(1529)
179 PF09324 DUF1981: Domain of un 88.1 3.3 7.1E-05 27.5 6.5 63 134-197 17-80 (86)
180 KOG2759|consensus 87.9 1.1 2.4E-05 38.4 5.0 81 81-163 350-438 (442)
181 KOG2149|consensus 87.9 12 0.00027 32.0 11.1 119 45-171 60-178 (393)
182 KOG4535|consensus 87.4 1.9 4.1E-05 37.9 6.2 80 57-141 543-624 (728)
183 KOG1059|consensus 87.4 4 8.6E-05 37.6 8.4 68 95-168 148-215 (877)
184 PF12333 Ipi1_N: Rix1 complex 87.3 3.6 7.7E-05 28.2 6.5 57 130-186 7-64 (102)
185 smart00185 ARM Armadillo/beta- 87.2 1.4 3E-05 24.0 3.7 28 135-162 13-40 (41)
186 smart00802 UME Domain in UVSB 87.0 4.4 9.5E-05 28.1 6.8 65 131-198 8-76 (107)
187 KOG2259|consensus 86.6 1.6 3.6E-05 39.6 5.5 89 96-196 378-466 (823)
188 PF12074 DUF3554: Domain of un 86.6 18 0.00038 30.2 13.8 84 100-187 31-119 (339)
189 PF04388 Hamartin: Hamartin pr 86.4 20 0.00044 33.1 12.6 78 105-184 81-161 (668)
190 COG5064 SRP1 Karyopherin (impo 86.3 2.4 5.2E-05 35.7 6.0 147 38-197 189-348 (526)
191 PF10521 DUF2454: Protein of u 86.0 12 0.00026 30.5 10.0 79 81-165 114-205 (282)
192 KOG1525|consensus 85.9 6.4 0.00014 38.8 9.5 143 36-197 252-397 (1266)
193 cd00256 VATPase_H VATPase_H, r 85.7 1.6 3.5E-05 37.8 5.0 66 95-162 357-424 (429)
194 KOG2259|consensus 85.7 6.7 0.00015 35.8 8.8 74 90-164 233-311 (823)
195 PF11701 UNC45-central: Myosin 85.2 8.3 0.00018 28.5 8.1 63 133-196 85-150 (157)
196 PF05804 KAP: Kinesin-associat 85.2 16 0.00034 34.0 11.3 47 152-199 267-313 (708)
197 PF08506 Cse1: Cse1; InterPro 84.6 20 0.00044 30.5 11.1 139 9-158 223-370 (370)
198 KOG2081|consensus 84.3 30 0.00064 31.0 12.0 62 9-75 29-93 (559)
199 KOG1061|consensus 83.5 8.3 0.00018 35.5 8.6 117 33-166 76-192 (734)
200 PF07539 DRIM: Down-regulated 83.5 4.5 9.7E-05 29.5 5.8 32 130-161 13-44 (141)
201 PF01465 GRIP: GRIP domain; I 83.5 2.9 6.3E-05 24.3 3.9 34 38-72 2-35 (46)
202 KOG1837|consensus 83.0 7.3 0.00016 38.8 8.4 64 132-196 1539-1602(1621)
203 PF14868 DUF4487: Domain of un 82.8 6.4 0.00014 35.4 7.6 68 98-165 486-554 (559)
204 KOG2022|consensus 82.7 45 0.00098 31.7 14.3 78 105-186 522-599 (982)
205 smart00638 LPD_N Lipoprotein N 82.7 36 0.00078 30.6 12.8 34 130-163 389-426 (574)
206 PF07571 DUF1546: Protein of u 82.4 3.6 7.8E-05 27.6 4.6 43 145-187 17-59 (92)
207 PF12830 Nipped-B_C: Sister ch 82.0 4.7 0.0001 30.7 5.8 58 135-197 9-66 (187)
208 KOG1058|consensus 81.4 47 0.001 31.1 13.4 87 96-195 322-415 (948)
209 KOG4535|consensus 81.4 8.5 0.00018 34.0 7.5 140 36-196 447-594 (728)
210 PF07571 DUF1546: Protein of u 81.3 10 0.00023 25.4 6.6 61 103-164 17-79 (92)
211 KOG1943|consensus 80.7 58 0.0013 31.7 13.5 144 10-163 354-500 (1133)
212 cd03561 VHS VHS domain family; 80.5 18 0.0004 25.8 8.3 66 131-198 34-105 (133)
213 COG5098 Chromosome condensatio 80.3 35 0.00076 31.8 11.1 113 46-163 302-415 (1128)
214 PLN03076 ARF guanine nucleotid 79.9 25 0.00055 36.2 11.2 89 103-193 1358-1477(1780)
215 PF03224 V-ATPase_H_N: V-ATPas 79.0 8.3 0.00018 31.8 6.7 88 98-185 62-160 (312)
216 KOG1078|consensus 78.8 57 0.0012 30.6 12.1 56 136-196 468-523 (865)
217 PF12333 Ipi1_N: Rix1 complex 78.5 2.1 4.6E-05 29.3 2.5 31 168-199 4-34 (102)
218 KOG1848|consensus 77.2 35 0.00077 34.0 10.7 103 56-162 1009-1131(1610)
219 KOG1517|consensus 77.2 8.7 0.00019 37.0 6.7 89 108-197 573-663 (1387)
220 KOG1293|consensus 77.1 34 0.00074 31.3 10.1 92 104-197 389-482 (678)
221 PF14961 BROMI: Broad-minded p 76.9 13 0.00029 36.3 7.9 72 96-169 166-237 (1296)
222 COG5656 SXM1 Importin, protein 76.3 69 0.0015 30.1 14.2 125 41-178 458-583 (970)
223 cd03572 ENTH_epsin_related ENT 75.7 26 0.00056 24.9 7.8 40 130-169 34-73 (122)
224 KOG1822|consensus 75.6 1.1E+02 0.0023 31.9 15.7 160 30-196 809-979 (2067)
225 PF13001 Ecm29: Proteasome sta 75.5 23 0.0005 31.4 8.8 48 146-195 386-433 (501)
226 KOG2137|consensus 75.3 62 0.0013 30.0 11.3 63 131-196 386-449 (700)
227 PF05804 KAP: Kinesin-associat 75.1 73 0.0016 29.8 14.2 128 63-196 507-640 (708)
228 KOG2549|consensus 75.0 63 0.0014 29.0 11.4 136 35-187 200-351 (576)
229 PF14500 MMS19_N: Dos2-interac 74.6 44 0.00095 27.0 12.3 63 132-194 78-142 (262)
230 smart00755 Grip golgin-97, Ran 74.3 7.9 0.00017 22.5 3.8 31 40-72 3-33 (46)
231 KOG2022|consensus 74.0 18 0.00038 34.3 7.7 75 9-92 53-130 (982)
232 PF00790 VHS: VHS domain; Int 73.7 27 0.00058 25.1 7.5 53 131-183 39-97 (140)
233 PF14225 MOR2-PAG1_C: Cell mor 72.8 49 0.0011 26.8 12.0 67 120-187 174-240 (262)
234 KOG1293|consensus 72.0 31 0.00066 31.6 8.5 99 96-197 424-525 (678)
235 PF01603 B56: Protein phosphat 72.0 54 0.0012 28.3 10.0 66 130-197 293-362 (409)
236 KOG2973|consensus 71.8 20 0.00044 29.8 6.9 64 96-163 8-71 (353)
237 COG5231 VMA13 Vacuolar H+-ATPa 71.8 7.9 0.00017 32.4 4.6 83 81-164 340-429 (432)
238 PF06371 Drf_GBD: Diaphanous G 71.8 6.8 0.00015 29.4 4.1 57 106-162 130-186 (187)
239 KOG2081|consensus 71.6 77 0.0017 28.5 10.9 73 111-187 408-480 (559)
240 KOG1077|consensus 71.3 91 0.002 29.2 14.9 90 95-192 372-461 (938)
241 PF08713 DNA_alkylation: DNA a 70.8 23 0.00049 27.1 6.9 56 133-195 119-174 (213)
242 PF04118 Dopey_N: Dopey, N-ter 70.3 62 0.0013 26.9 9.8 94 96-199 102-195 (307)
243 PF12783 Sec7_N: Guanine nucle 70.3 41 0.00089 24.8 10.5 65 133-197 72-138 (168)
244 PF08623 TIP120: TATA-binding 70.0 7.1 0.00015 29.4 3.7 46 148-197 41-86 (169)
245 cd03569 VHS_Hrs_Vps27p VHS dom 69.8 40 0.00086 24.5 9.1 63 131-197 38-106 (142)
246 cd03568 VHS_STAM VHS domain fa 69.3 41 0.0009 24.5 9.9 67 131-197 34-102 (144)
247 cd00256 VATPase_H VATPase_H, r 67.1 87 0.0019 27.4 11.5 116 42-163 52-173 (429)
248 PF05536 Neurochondrin: Neuroc 67.1 97 0.0021 27.9 12.6 98 96-198 103-206 (543)
249 KOG2759|consensus 66.5 28 0.0006 30.2 6.9 84 30-120 350-437 (442)
250 PF12783 Sec7_N: Guanine nucle 65.4 53 0.0011 24.3 11.5 67 96-164 78-147 (168)
251 PF10350 DUF2428: Putative dea 64.2 73 0.0016 25.5 13.6 149 34-187 87-252 (255)
252 PF01347 Vitellogenin_N: Lipop 63.6 1.1E+02 0.0025 27.5 10.9 35 130-164 427-465 (618)
253 KOG0929|consensus 63.4 52 0.0011 33.3 8.8 88 103-191 1185-1284(1514)
254 KOG1851|consensus 62.1 81 0.0018 32.1 9.7 68 129-197 1521-1590(1710)
255 PF11864 DUF3384: Domain of un 60.8 1.2E+02 0.0025 26.7 15.2 148 43-198 301-459 (464)
256 KOG3036|consensus 59.1 42 0.00092 27.1 6.3 67 127-194 116-186 (293)
257 KOG0946|consensus 57.9 80 0.0017 29.9 8.5 64 132-196 120-186 (970)
258 PF08767 CRM1_C: CRM1 C termin 57.7 1.1E+02 0.0024 25.4 12.8 135 58-198 41-187 (319)
259 COG5240 SEC21 Vesicle coat com 57.2 1.6E+02 0.0034 27.1 11.8 53 130-182 408-461 (898)
260 KOG4646|consensus 56.9 17 0.00038 26.7 3.5 63 96-164 21-88 (173)
261 KOG4524|consensus 56.4 65 0.0014 31.0 7.9 84 103-186 814-900 (1014)
262 PF14225 MOR2-PAG1_C: Cell mor 55.5 1.1E+02 0.0024 24.7 8.8 64 96-165 193-256 (262)
263 KOG3961|consensus 55.0 68 0.0015 25.4 6.7 86 96-183 119-207 (262)
264 smart00288 VHS Domain present 54.7 76 0.0016 22.6 9.7 67 131-197 34-103 (133)
265 PF14675 FANCI_S1: FANCI solen 54.5 1.1E+02 0.0023 24.3 9.9 77 80-166 62-142 (223)
266 KOG4500|consensus 54.3 54 0.0012 28.8 6.5 33 132-164 313-345 (604)
267 PF03378 CAS_CSE1: CAS/CSE pro 53.5 48 0.001 29.0 6.4 64 103-166 83-149 (435)
268 PF10978 DUF2785: Protein of u 52.5 98 0.0021 23.3 9.4 47 10-58 12-58 (175)
269 KOG4413|consensus 51.7 65 0.0014 27.3 6.5 64 98-162 89-156 (524)
270 PF14500 MMS19_N: Dos2-interac 50.7 1.3E+02 0.0029 24.2 14.1 51 131-181 205-256 (262)
271 COG5537 IRR1 Cohesin [Cell div 50.2 1.1E+02 0.0023 28.2 7.9 81 82-163 300-386 (740)
272 COG5231 VMA13 Vacuolar H+-ATPa 50.2 20 0.00044 30.1 3.3 62 134-198 356-421 (432)
273 PF08620 RPAP1_C: RPAP1-like, 49.9 41 0.00089 21.6 4.1 31 136-166 41-71 (73)
274 PF14668 RICTOR_V: Rapamycin-i 49.7 49 0.0011 21.2 4.4 51 111-164 6-59 (73)
275 KOG0413|consensus 49.1 2.7E+02 0.0059 27.4 11.2 65 98-169 1013-1079(1529)
276 COG5095 TAF6 Transcription ini 49.0 1.4E+02 0.0031 25.0 7.9 72 103-184 209-286 (450)
277 KOG2137|consensus 47.5 2.4E+02 0.0052 26.3 12.1 113 32-162 377-495 (700)
278 PF12397 U3snoRNP10: U3 small 47.3 93 0.002 21.5 7.2 35 131-165 3-38 (121)
279 PF14663 RasGEF_N_2: Rapamycin 47.0 36 0.00079 23.7 3.9 31 135-165 9-39 (115)
280 PF14631 FancD2: Fanconi anaem 46.8 3.4E+02 0.0074 27.8 12.6 75 102-180 445-519 (1426)
281 cd08050 TAF6 TATA Binding Prot 46.5 1.1E+02 0.0024 25.7 7.3 77 103-185 189-268 (343)
282 COG5116 RPN2 26S proteasome re 46.2 1.6E+02 0.0036 27.0 8.4 85 48-146 590-674 (926)
283 PF13925 Katanin_con80: con80 46.2 73 0.0016 23.7 5.6 38 133-170 68-105 (164)
284 PF12054 DUF3535: Domain of un 45.4 1.3E+02 0.0029 26.2 7.9 77 106-186 101-179 (441)
285 COG5095 TAF6 Transcription ini 44.9 1.9E+02 0.0041 24.3 13.2 56 113-168 253-321 (450)
286 KOG0889|consensus 43.8 4.4E+02 0.0096 29.7 12.0 143 9-163 647-796 (3550)
287 KOG1848|consensus 43.6 2.1E+02 0.0046 29.0 9.3 95 103-198 1008-1125(1610)
288 PF06628 Catalase-rel: Catalas 43.1 82 0.0018 19.6 5.2 34 30-63 14-47 (68)
289 PF03378 CAS_CSE1: CAS/CSE pro 43.1 2.3E+02 0.005 24.8 13.2 56 130-187 198-254 (435)
290 PHA02855 anti-apoptotic membra 42.6 1E+02 0.0022 23.2 5.6 34 91-124 76-109 (180)
291 PF04078 Rcd1: Cell differenti 42.3 1.3E+02 0.0028 24.5 6.7 66 128-194 88-157 (262)
292 PF11701 UNC45-central: Myosin 42.0 84 0.0018 23.1 5.4 92 103-198 16-110 (157)
293 KOG3961|consensus 41.9 29 0.00062 27.5 2.8 64 133-197 113-176 (262)
294 PF09268 Clathrin-link: Clathr 41.6 9 0.0002 19.0 0.1 20 175-195 3-22 (24)
295 PHA02836 putative transmembran 41.0 57 0.0012 23.6 4.0 36 152-187 105-141 (153)
296 PF11935 DUF3453: Domain of un 40.8 1.4E+02 0.0031 23.6 6.8 60 103-162 4-71 (239)
297 KOG4524|consensus 40.3 3.2E+02 0.007 26.6 9.7 89 44-143 804-902 (1014)
298 cd00197 VHS_ENTH_ANTH VHS, ENT 40.2 1.2E+02 0.0026 20.7 9.7 40 130-169 33-72 (115)
299 TIGR03092 SASP_sspI small, aci 40.2 38 0.00081 21.2 2.6 24 29-52 41-64 (65)
300 PF11841 DUF3361: Domain of un 36.6 1.8E+02 0.0039 21.7 9.9 70 127-197 47-123 (160)
301 PF11919 DUF3437: Domain of un 36.5 43 0.00094 22.4 2.8 39 149-187 4-42 (90)
302 KOG2213|consensus 36.4 1.8E+02 0.0039 25.2 6.9 83 108-199 40-131 (460)
303 PF14664 RICTOR_N: Rapamycin-i 36.3 1.3E+02 0.0028 25.7 6.3 87 113-199 4-91 (371)
304 PF04388 Hamartin: Hamartin pr 36.3 1.8E+02 0.0039 27.0 7.5 80 58-144 82-162 (668)
305 PF14222 MOR2-PAG1_N: Cell mor 36.2 3.3E+02 0.0072 24.7 11.2 115 43-163 129-249 (552)
306 PLN03205 ATR interacting prote 36.0 3E+02 0.0066 24.1 10.0 95 103-197 334-438 (652)
307 PF11841 DUF3361: Domain of un 35.7 1.9E+02 0.0041 21.7 10.2 86 81-167 49-135 (160)
308 PF03130 HEAT_PBS: PBS lyase H 35.3 45 0.00099 16.5 2.1 14 150-163 1-14 (27)
309 KOG1566|consensus 34.5 1.9E+02 0.004 24.4 6.6 59 138-197 216-278 (342)
310 PF11262 Tho2: Transcription f 34.3 1.6E+02 0.0035 24.2 6.4 55 131-186 223-278 (298)
311 PF11099 M11L: Apoptosis regul 34.3 1.8E+02 0.004 21.9 6.0 33 92-124 65-97 (167)
312 cd03562 CID CID (CTD-Interacti 33.8 1.5E+02 0.0033 20.1 8.0 64 131-195 34-98 (114)
313 KOG1087|consensus 33.8 3.4E+02 0.0074 24.1 8.6 67 130-197 34-104 (470)
314 KOG1789|consensus 33.7 5.2E+02 0.011 26.2 12.9 87 96-187 1818-1910(2235)
315 COG4912 Predicted DNA alkylati 33.3 2.3E+02 0.005 22.4 6.6 60 129-194 113-172 (222)
316 KOG1822|consensus 32.9 6.3E+02 0.014 26.9 14.0 126 35-168 867-993 (2067)
317 KOG2199|consensus 32.7 3.3E+02 0.0072 23.7 8.2 66 114-181 27-98 (462)
318 KOG0168|consensus 32.5 4.7E+02 0.01 25.3 13.9 123 42-166 210-367 (1051)
319 KOG3036|consensus 32.5 2.8E+02 0.006 22.6 11.2 60 103-163 136-197 (293)
320 PF12074 DUF3554: Domain of un 32.1 2.9E+02 0.0064 22.8 15.5 38 35-73 53-90 (339)
321 KOG0889|consensus 31.8 6.4E+02 0.014 28.6 11.0 149 37-186 913-1086(3550)
322 PRK02955 small acid-soluble sp 31.7 61 0.0013 20.5 2.6 24 29-52 44-67 (68)
323 KOG2011|consensus 31.7 2.3E+02 0.0051 27.8 7.6 88 103-197 298-391 (1048)
324 KOG4833|consensus 31.6 1.7E+02 0.0036 25.4 6.0 74 103-187 265-343 (573)
325 cd03561 VHS VHS domain family; 31.6 1.9E+02 0.0041 20.5 8.2 68 99-167 45-116 (133)
326 PF09759 Atx10homo_assoc: Spin 31.2 88 0.0019 21.5 3.6 32 136-167 30-63 (102)
327 PF12422 Condensin2nSMC: Conde 31.1 2.1E+02 0.0046 20.9 7.6 84 30-118 58-145 (152)
328 PF11640 TAN: Telomere-length 30.7 2.1E+02 0.0046 20.8 7.7 90 97-187 10-119 (155)
329 PF12030 DUF3517: Domain of un 30.5 3.3E+02 0.0072 23.0 10.3 60 85-149 164-223 (337)
330 KOG4199|consensus 29.2 3.7E+02 0.008 23.1 16.4 141 42-197 240-395 (461)
331 KOG1048|consensus 29.1 4.9E+02 0.011 24.5 12.8 114 42-162 517-640 (717)
332 PF08158 NUC130_3NT: NUC130/3N 29.0 70 0.0015 19.0 2.5 36 161-197 5-40 (52)
333 cd03567 VHS_GGA VHS domain fam 28.9 2.3E+02 0.0049 20.5 9.9 65 133-197 37-108 (139)
334 PF12031 DUF3518: Domain of un 28.2 2.3E+02 0.0049 22.9 5.9 57 107-163 139-202 (257)
335 PF08569 Mo25: Mo25-like; Int 28.0 3.7E+02 0.008 22.6 10.4 60 138-198 168-231 (335)
336 KOG2011|consensus 27.8 6.1E+02 0.013 25.1 10.2 65 131-198 279-348 (1048)
337 PF12612 TFCD_C: Tubulin foldi 27.3 2.8E+02 0.006 21.0 11.7 53 131-183 84-139 (193)
338 PF10083 DUF2321: Uncharacteri 26.9 1.7E+02 0.0036 21.8 4.6 27 33-59 95-121 (158)
339 PF07923 N1221: N1221-like pro 26.4 1.2E+02 0.0027 24.7 4.4 41 31-72 48-88 (293)
340 KOG1058|consensus 25.9 5.9E+02 0.013 24.3 17.0 114 39-166 313-428 (948)
341 PF06926 Rep_Org_C: Putative r 25.7 2.1E+02 0.0046 19.1 5.1 65 133-199 5-70 (95)
342 KOG1078|consensus 24.8 6.2E+02 0.013 24.2 11.4 64 130-198 241-304 (865)
343 PF14098 SSPI: Small, acid-sol 24.7 84 0.0018 19.7 2.4 22 29-50 42-63 (65)
344 KOG2973|consensus 24.2 1.8E+02 0.0038 24.5 4.8 52 136-187 5-56 (353)
345 KOG0803|consensus 24.0 6.6E+02 0.014 25.6 9.3 72 82-163 82-153 (1312)
346 PF08568 Kinetochor_Ybp2: Unch 23.8 2.5E+02 0.0053 25.8 6.2 35 134-168 441-476 (633)
347 smart00567 EZ_HEAT E-Z type HE 23.5 70 0.0015 16.0 1.6 14 148-161 1-14 (30)
348 PF11229 DUF3028: Protein of u 23.5 5.6E+02 0.012 23.2 11.1 38 133-170 295-334 (589)
349 PF08045 CDC14: Cell division 23.2 2.8E+02 0.0061 22.5 5.7 63 136-199 135-201 (257)
350 KOG2021|consensus 22.7 6.9E+02 0.015 24.0 14.2 82 103-186 504-587 (980)
351 PF12397 U3snoRNP10: U3 small 22.4 2.7E+02 0.0058 19.1 6.9 64 96-165 11-76 (121)
352 COG5537 IRR1 Cohesin [Cell div 22.2 6.1E+02 0.013 23.6 8.0 52 142-198 322-379 (740)
353 PF02944 BESS: BESS motif; In 22.0 1.2E+02 0.0027 16.3 2.5 22 33-54 15-36 (37)
354 KOG2020|consensus 20.2 3.1E+02 0.0067 27.1 6.2 54 108-166 112-165 (1041)
No 1
>KOG2171|consensus
Probab=99.92 E-value=3.1e-24 Score=193.61 Aligned_cols=178 Identities=21% Similarity=0.359 Sum_probs=148.4
Q ss_pred ccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 4 IQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 4 ~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
|.+.+.++++||+|||++||+++++ |.++++++|+.||+.+|.++..|+.+.||+++|++||+++++.++. .
T Consensus 44 i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~ 115 (1075)
T KOG2171|consen 44 ILATSADPQVRQLAAVLLRKLLTKH----WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----K 115 (1075)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHH----hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----c
Confidence 3445599999999999999999987 9999999999999999999999999999999999999999999983 9
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
||||++. |+++.. +++++.|..|..++..+...+.. ...++.+++++.|.++++|++..||.+|+++++.++.
T Consensus 116 WPell~~-----L~q~~~-S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 116 WPELLQF-----LFQSTK-SPNPSLRESALLILSSLPETFGN-TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred hHHHHHH-----HHHHhc-CCCcchhHHHHHHHHhhhhhhcc-ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 9999998 556776 78889999988888877765542 3457889999999999999977799999999999999
Q ss_pred hhh--hh-hHHHHHHHHHHH---HHhhCCCCCHHHhhhhh
Q psy15255 164 IFG--NQ-ESTYLVVIKQML---QQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~--~~-l~~~~~~l~~~l---~~~l~d~~~~~Vr~~A~ 197 (199)
+.+ +. ...+.+.+|.++ ....+++ |.+....++
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-d~~~a~~~l 227 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDG-DDDAAKSAL 227 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhcc-chHHHHHHH
Confidence 985 22 355666666554 5556665 665554443
No 2
>KOG2023|consensus
Probab=99.92 E-value=2.1e-24 Score=185.61 Aligned_cols=183 Identities=17% Similarity=0.230 Sum_probs=159.0
Q ss_pred cccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh
Q psy15255 5 QDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 84 (199)
Q Consensus 5 ~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W 84 (199)
+-.+.++.+|++||+||||++..+ |...++++..|+|+.++++|++ +++.+|.+ +|.++....+.++...|
T Consensus 56 ~~~~~d~~~Rs~aGLlLKNnvr~~----~~~~~~~~~~yiKs~~l~~lgd-~~~lIr~t----vGivITTI~s~~~~~~w 126 (885)
T KOG2023|consen 56 RAKSEDVPTRSLAGLLLKNNVRGH----YNSIPSEVLDYIKSECLHGLGD-ASPLIRAT----VGIVITTIASTGGLQHW 126 (885)
T ss_pred cccccchhHHHHhhhhHhcccccc----ccCCChHHHHHHHHHHHhhccC-chHHHHhh----hhheeeeeecccccccc
Confidence 345678999999999999999999 9999999999999999999999 88899996 45555555566788999
Q ss_pred HHHHHHHHHH-----------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 85 PEFLQNNLKS-----------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 85 peLl~~~ik~-----------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
|+++|.++.- .+++++. ++++.+|..|..|+..+...-
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheeecC
Confidence 9999987721 2666777 889999999999998765322
Q ss_pred HhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 124 IDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+.+..+.+.++..+|++..|+++.||...|++|+.+.|..++.+.||++.|++++.+..+|+ |++|.++||+|
T Consensus 206 -~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEF 279 (885)
T KOG2023|consen 206 -TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEF 279 (885)
T ss_pred -cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHH
Confidence 223346889999999999999999999999999999999999999999999999999999998 99999999998
No 3
>KOG1241|consensus
Probab=99.82 E-value=3.3e-19 Score=155.58 Aligned_cols=193 Identities=12% Similarity=0.201 Sum_probs=161.9
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcch-h------hHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFST-D------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~-~------~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
++|+|.......|..||+.|||.+.. + +...|-.++.+.|++||+.++..|++ +.|..+..+++++|.+|..
T Consensus 42 ~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ 120 (859)
T KOG1241|consen 42 EVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACI 120 (859)
T ss_pred HHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHh
Confidence 46788888899999999999998843 2 36789999999999999999999999 9999999999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHH--------------------------------------HHHHHHh-hcccHHHHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKS--------------------------------------QIILLLQ-TCDNDNIRRKICDA 115 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~--------------------------------------~ll~~l~-~~~~~~vr~~a~~~ 115 (199)
+++ .+.||+|.+.++.+ ++++..+ .+++..||..|..+
T Consensus 121 ElP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~a 197 (859)
T KOG1241|consen 121 ELP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNA 197 (859)
T ss_pred hCc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHH
Confidence 999 79999998877643 1333333 67888899988888
Q ss_pred HHHHHHHhHhhhcc-CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH-HHHHHHHhhCCCCCHHHh
Q psy15255 116 AAEVARNLIDDAGN-NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV-IKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 116 i~~i~~~~~~~~~~-~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~-l~~~l~~~l~d~~~~~Vr 193 (199)
+..-....-.++.+ ...+-++++.....+++|.++|.+|+.+|++|+...++.+.+|+.. +..+....|.++ +++|+
T Consensus 198 L~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~deVa 276 (859)
T KOG1241|consen 198 LYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-NDEVA 276 (859)
T ss_pred HHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHH
Confidence 87655433222211 3456789999999999999999999999999999999999888765 888889999987 99999
Q ss_pred hhhhcC
Q psy15255 194 ALQLKF 199 (199)
Q Consensus 194 ~~A~~f 199 (199)
.+|+||
T Consensus 277 lQaiEF 282 (859)
T KOG1241|consen 277 LQAIEF 282 (859)
T ss_pred HHHHHH
Confidence 999998
No 4
>KOG2171|consensus
Probab=99.80 E-value=5.5e-19 Score=159.97 Aligned_cols=165 Identities=33% Similarity=0.558 Sum_probs=141.2
Q ss_pred HHHHhhcchhh------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HH
Q psy15255 19 VLLRKIFSTDF------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQ 89 (199)
Q Consensus 19 vlLr~~~~~~~------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~ 89 (199)
.|+.++.++|+ ++.+.++.-+.+ +-..|-+.+...+++.+|. .+|+++|+++.+ .|+.| .+
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq----~aaVl~Rkl~~~----~w~~l~~e~~ 77 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQ----LAAVLLRKLLTK----HWSRLSAEVQ 77 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHH----HHHHHHHHHHHH----HhhcCCHHHH
Confidence 35666666654 444444333333 6667778888889999988 789999999863 89888 88
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh
Q psy15255 90 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE 169 (199)
Q Consensus 90 ~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l 169 (199)
+-||+.|+.+++.|+.++|||+.|+++++|++..++ ..||+|+++++++++++++..|++|+.+|..+++.++..+
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~----e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP----EKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 899999999999999999999999999999998876 2899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 170 STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 170 ~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+|++.+.++|.+||+|++++ ||.+|++
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~-vr~~a~r 181 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSP-VRVAAVR 181 (1075)
T ss_pred chhHHHHHHHHHHhccCCcch-HHHHHHH
Confidence 999999999999999998555 9998864
No 5
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.71 E-value=9e-16 Score=131.14 Aligned_cols=193 Identities=12% Similarity=0.246 Sum_probs=158.8
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcch-h------hHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFST-D------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~-~------~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
|++.|....++.|-.||+.|||.+.. | +...|..+++|.|+++|...+++|++ ++|...+.+++.+|.||+.
T Consensus 46 qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~ 124 (858)
T COG5215 46 QVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARM 124 (858)
T ss_pred HHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHh
Confidence 46677767799999999999998743 2 36789999999999999999999999 9999999999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHH----------------------------------HHHH-----HhhcccHHHHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQ----------------------------------IILL-----LQTCDNDNIRRKICDA 115 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~----------------------------------ll~~-----l~~~~~~~vr~~a~~~ 115 (199)
+++ ++.||+|...++++. ++.. ...+++..+|..++.+
T Consensus 125 Elp---~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~a 201 (858)
T COG5215 125 ELP---NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKA 201 (858)
T ss_pred hCc---cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 999 899999988877531 2222 2267788899888888
Q ss_pred HHHHHHHhHhhhc-cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhhCCCCCHHHh
Q psy15255 116 AAEVARNLIDDAG-NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 116 i~~i~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l~d~~~~~Vr 193 (199)
+..-....-+++- ....+.++++.....+.+|..++.+|+.+|++|+....+.+.+|+. .+..+...+|.++ +.+|.
T Consensus 202 L~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~-nd~va 280 (858)
T COG5215 202 LMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ-NDEVA 280 (858)
T ss_pred HHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHH
Confidence 8763333322221 2456789999999999999999999999999999988888887775 5677788899998 89999
Q ss_pred hhhhcC
Q psy15255 194 ALQLKF 199 (199)
Q Consensus 194 ~~A~~f 199 (199)
..|++|
T Consensus 281 ~qavEf 286 (858)
T COG5215 281 IQAVEF 286 (858)
T ss_pred HHHHHH
Confidence 999988
No 6
>KOG1241|consensus
Probab=99.31 E-value=2.5e-11 Score=106.87 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=139.1
Q ss_pred HHHHHHhhcchhh------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC-------CCC
Q psy15255 17 SAVLLRKIFSTDF------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-------NNL 83 (199)
Q Consensus 17 a~vlLr~~~~~~~------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~-------~~~ 83 (199)
..+|.+ .+++|. +....++..++...+-..|-+.|.+..++.+-|. ++|..+||.+...+ ...
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~---~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARM---AAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHH---HHhHHHhhhhccCCHHHHHHHHHH
Confidence 344444 666652 5666777778888888889999999766655443 68899999987543 356
Q ss_pred hHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q psy15255 84 WPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT-TLKESALRLFT 159 (199)
Q Consensus 84 WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vr~~a~~~l~ 159 (199)
|-.+ .+..||+.++..+. .+.|..+..|+++++.|+...++ .+.||+|++.+...+.++.+ .+|++++.++|
T Consensus 80 Wl~l~~e~reqVK~~il~tL~-~~ep~~~s~Aaq~va~IA~~ElP---~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLG-SPEPRRPSSAAQCVAAIACIELP---QNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcC-CCCCCccchHHHHHHHHHHhhCc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 7655 67889999999999 78889999999999999998887 57999999999999987755 49999999999
Q ss_pred hhhHhhhhh-hHHHHHHHHHHHHHhhCCC-CCHHHhhhhhc
Q psy15255 160 SVPEIFGNQ-ESTYLVVIKQMLQQCLLPP-NPYSVQALQLK 198 (199)
Q Consensus 160 ~i~e~~~~~-l~~~~~~l~~~l~~~l~d~-~~~~Vr~~A~~ 198 (199)
++|+.++++ +..+.+.++.-+.+++... .+..||++|.+
T Consensus 156 yice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~ 196 (859)
T KOG1241|consen 156 YICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALN 196 (859)
T ss_pred HHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHH
Confidence 999998877 6777888888888888763 26779998864
No 7
>KOG2023|consensus
Probab=99.11 E-value=1.3e-09 Score=95.17 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC
Q psy15255 66 DAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS 145 (199)
Q Consensus 66 ~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~ 145 (199)
.++|.|+||.+...++.. |.=...++|++.+.++. ++++.+|...+.+|..|++. .+..+||+++|.|.+++.+
T Consensus 66 s~aGLlLKNnvr~~~~~~-~~~~~~yiKs~~l~~lg-d~~~lIr~tvGivITTI~s~----~~~~~wpelLp~L~~~L~s 139 (885)
T KOG2023|consen 66 SLAGLLLKNNVRGHYNSI-PSEVLDYIKSECLHGLG-DASPLIRATVGIVITTIAST----GGLQHWPELLPQLCELLDS 139 (885)
T ss_pred HHhhhhHhccccccccCC-ChHHHHHHHHHHHhhcc-CchHHHHhhhhheeeeeecc----cccccchhHHHHHHHHhcC
Confidence 378999999987443333 33356799999999999 88899998888888877763 3468999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhhh-----HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQE-----STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~l-----~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
++....+.|+.++.+|||...+.+ ...++.+++-+.+.++++ ++.+|..|+.
T Consensus 140 ~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~ 196 (885)
T KOG2023|consen 140 PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVG 196 (885)
T ss_pred CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHh
Confidence 999999999999999999876554 246788888999999998 9999998864
No 8
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.05 E-value=2.2e-09 Score=73.53 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC
Q psy15255 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN 188 (199)
Q Consensus 109 r~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~ 188 (199)
|+.++-.++.++..+... ...+.+++++.++.++.|+|++||+.||+++..++......+.+|.+.|...+...+.|+
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~- 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP- 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 555666666665555432 346889999999999999999999999999999999988888889999999999999998
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
|++||..|.
T Consensus 81 d~~Vr~~a~ 89 (97)
T PF12755_consen 81 DENVRSAAE 89 (97)
T ss_pred chhHHHHHH
Confidence 999998874
No 9
>KOG2274|consensus
Probab=99.03 E-value=1.4e-08 Score=91.32 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=110.3
Q ss_pred ccccCCCHHHHHHHHHHHHhhcchhh---Hh--hhhc-cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC
Q psy15255 4 IQDAGRSVEERQMSAVLLRKIFSTDF---IE--IYSK-LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 77 (199)
Q Consensus 4 ~~~~~~~~~~R~~a~vlLr~~~~~~~---~~--~~~~-l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~ 77 (199)
..+...+.+.||.|.++||+.+..|| .+ .+.. .+.+.|..||..|++++.+ ++..+|+.++..|+.++...+|
T Consensus 45 a~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P 123 (1005)
T KOG2274|consen 45 AANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP 123 (1005)
T ss_pred HhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc
Confidence 34455678999999999999999987 22 2333 6789999999999999997 9999999999999999988665
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh--hh--ccCChHHHHHHHHHHhcCCCHHHHHH
Q psy15255 78 DAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID--DA--GNNLWPEFLQFLFQCANSDNTTLKES 153 (199)
Q Consensus 78 ~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~--~~--~~~~~~~ll~~l~~~~~~~~~~vr~~ 153 (199)
+.|||+++. ++++++ +.+.+--|.+.+++.++...+.. .+ +....+++.- +|......+-..|-.
T Consensus 124 ----d~WpElv~~-----i~~~l~-~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~-~f~~~~~~s~~~~~~ 192 (1005)
T KOG2274|consen 124 ----DEWPELVPF-----ILKLLS-SGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYR-IFALTIVYSIITRLG 192 (1005)
T ss_pred ----hhhHHHHHH-----HHHHHh-ccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhh-hhhhccccchhHHHH
Confidence 789999998 667888 57777778899999888776632 11 2234455443 344444444444544
Q ss_pred HH--HHHHhhhHhhh
Q psy15255 154 AL--RLFTSVPEIFG 166 (199)
Q Consensus 154 a~--~~l~~i~e~~~ 166 (199)
++ ..+.++...+.
T Consensus 193 aa~~~lf~sc~~li~ 207 (1005)
T KOG2274|consen 193 AARGKLFTSCLTLIT 207 (1005)
T ss_pred hhhhHHHHHHHHHHh
Confidence 44 66666654443
No 10
>KOG1992|consensus
Probab=98.81 E-value=2.7e-07 Score=82.60 Aligned_cols=180 Identities=14% Similarity=0.253 Sum_probs=123.6
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh---HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF---IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 78 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~---~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~ 78 (199)
+++++.+.++.+|..|++-+||.++.+| +..-.++.+++++.||+.++.+.-+ ....+-.+++++++.+++..++
T Consensus 44 ~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP- 121 (960)
T KOG1992|consen 44 NLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP- 121 (960)
T ss_pred HHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-
Confidence 5778887899999999999999999885 1223468899999999999999998 7788999999999999988665
Q ss_pred CCCCChHHHHHHHHHH----------------------------------H-----------HHHHHh--------hccc
Q psy15255 79 AGNNLWPEFLQNNLKS----------------------------------Q-----------IILLLQ--------TCDN 105 (199)
Q Consensus 79 ~~~~~WpeLl~~~ik~----------------------------------~-----------ll~~l~--------~~~~ 105 (199)
..||.|+|.++++ + +..++. .+++
T Consensus 122 ---~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~ 198 (960)
T KOG1992|consen 122 ---DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHAND 198 (960)
T ss_pred ---hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccc
Confidence 7899999988853 0 111111 1112
Q ss_pred HHHHHHHHHHHHHHHHHh-------HhhhccCChHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhhhHhh
Q psy15255 106 DNIRRKICDAAAEVARNL-------IDDAGNNLWPEFLQFLFQCANSDN-------------TTLKESALRLFTSVPEIF 165 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~-------~~~~~~~~~~~ll~~l~~~~~~~~-------------~~vr~~a~~~l~~i~e~~ 165 (199)
...-+...+++.-++... ++.+..++..+.++.+.+.++... .++|..-|+.+.-...-.
T Consensus 199 ~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kY 278 (960)
T KOG1992|consen 199 AAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKY 278 (960)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 221111122222222222 223445677788888888887322 135667788877777777
Q ss_pred hhhhHHHHHHHHHHHHHhhCC
Q psy15255 166 GNQESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 166 ~~~l~~~~~~l~~~l~~~l~d 186 (199)
++.+.++++.++...-+.+.+
T Consensus 279 eEef~~fl~~fv~~~W~LL~~ 299 (960)
T KOG1992|consen 279 EEEFQPFLPDFVTATWNLLVS 299 (960)
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 777788888777666555554
No 11
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.81 E-value=6.8e-07 Score=70.37 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=109.9
Q ss_pred ccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHH---HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCC
Q psy15255 6 DAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLK---SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 82 (199)
Q Consensus 6 ~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik---~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~ 82 (199)
+++.+=..|.-|..-||+.+..+. -....+.....++ ..+...+.+ ....|.+.+|.+++.++..+ ..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~---~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l-----~~ 86 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNA---PEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQL-----GS 86 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHH-----GG
T ss_pred CCccCHHHHHHHHHHHHHHHHcCC---ccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH-----hH
Confidence 344566778888888999887540 1123344445566 566677776 67778888999999999887 22
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHH-HHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~l-l~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
........++ ..|+..+. ++...++..|..++..|+... ..-+.+ ++.+..+..+.++.+|..++..+..+
T Consensus 87 ~~~~~~~~~l-~~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~------~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 87 HFEPYADILL-PPLLKKLG-DSKKFIREAANNALDAIIESC------SYSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGHHHHHHHH-HHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHc-cccHHHHHHHHHHHHHHHHHC------CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3433322211 12555666 677889999888888777532 123555 88889999999999999999999999
Q ss_pred hHhhh---hhhHH--HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFG---NQEST--YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~---~~l~~--~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++..+ ..+.. ..+.+.+.+..++.|+ +++||.+|-
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar 198 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAAR 198 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHH
Confidence 98888 33543 3578999999999998 999998874
No 12
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.68 E-value=3.1e-08 Score=64.76 Aligned_cols=53 Identities=26% Similarity=0.513 Sum_probs=45.1
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhH----hhhhccCHhhHHHHHHHHHHHHhc
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFI----EIYSKLAVNDQNNLKSQIILLLQT 54 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~----~~~~~l~~~~~~~ik~~ll~~L~~ 54 (199)
+++.+.+.++.+|++|+++|||.++.+|. ..|..+++++|+.||+.++++|.+
T Consensus 21 ~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 21 QILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 46667767999999999999999999843 445599999999999999999863
No 13
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.6e-06 Score=75.32 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=124.8
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhhcCcCC-------CCChHHH---HHHHHHHHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDN-DNIRRKICDAAAEVARNLIDDAG-------NNLWPEF---LQNNLKSQIIL 98 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~-~~vR~~~~~~ia~la~~~l~~~~-------~~~WpeL---l~~~ik~~ll~ 98 (199)
|....++...+....-..+.+.|-++++ +..| .++|.++|+.+...+ ...|-.+ .+..+|...+.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~R----m~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~ 101 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQVLCDLNSNDQLR----MVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALR 101 (858)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhccCCcHHHH----HHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 6667778888888888899999998643 3444 478889999875432 3556444 56788888999
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH-HHHHHHHHHHHhhhHhhhhh-hHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT-TLKESALRLFTSVPEIFGNQ-ESTYLVVI 176 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vr~~a~~~l~~i~e~~~~~-l~~~~~~l 176 (199)
.+. .+.|.....|+..++.|+...++ +..||+|+..+...+.++.| .++..++.++++.|+...++ +....+.+
T Consensus 102 aL~-s~epr~~~~Aaql~aaIA~~Elp---~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 102 ALK-SPEPRFCTMAAQLLAAIARMELP---NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred Hhc-CCccHHHHHHHHHHHHHHHhhCc---cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 998 89999999999999999998876 57999999999999987744 57889999999999987764 55545544
Q ss_pred -HHHHHHhhCCCCCHHHhhhhhc
Q psy15255 177 -KQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 177 -~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++...++.+.+..||++|++
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~ 200 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALK 200 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHH
Confidence 5555555665447789999874
No 14
>KOG1993|consensus
Probab=98.59 E-value=1.7e-06 Score=77.35 Aligned_cols=115 Identities=14% Similarity=0.236 Sum_probs=91.6
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcchhhH-hhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC
Q psy15255 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFI-EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 79 (199)
Q Consensus 1 ~~~~~~~~~~~~~R~~a~vlLr~~~~~~~~-~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~ 79 (199)
++++.|.+.+..+|=+|.+-+||-+...|. +.-..+++|.|+.||..++..+. |+++.+..+.|-++|.+||..+|
T Consensus 38 ~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-- 114 (978)
T KOG1993|consen 38 YSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-- 114 (978)
T ss_pred HHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC--
Confidence 356778888999999999999999988842 11245899999999999999998 59999999999999999999765
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhHh
Q psy15255 80 GNNLWPEFLQNNLKSQIILLLQT---CDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 80 ~~~~WpeLl~~~ik~~ll~~l~~---~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..||+|.+.+. +.++. ..+..+.+++.-++..+.+.+..
T Consensus 115 --reWP~Lf~~L~-----~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat 156 (978)
T KOG1993|consen 115 --REWPDLFPDLL-----GQLQSSLGTGDSLVQHRILITLHHILKALAT 156 (978)
T ss_pred --ccchhHHHHHH-----HHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 68999999844 45551 23566677777777777766654
No 15
>PRK09687 putative lyase; Provisional
Probab=98.52 E-value=3.8e-06 Score=68.45 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
.|...+.+++++.||..++...|.+... ...| |+++.. +...+. ++++.||..+...++.+.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~------~~~~~~~a~~~-----l~~~~~-D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKK------NPLYSPKIVEQ-----SQITAF-DKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccc------ccccchHHHHH-----HHHHhh-CCCHHHHHHHHHHHhccC-----
Confidence 3444434448888888888888776422 2223 444432 222333 567777777655553211
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-++-++.|..++.|+++.||..|..+++.+... ...+.+.+...+.|+ +++||..|+
T Consensus 157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~-~~~VR~~A~ 213 (280)
T PRK09687 157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDK-NEEIRIEAI 213 (280)
T ss_pred ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 145667777777777778888888887776110 123334455566775 777777665
No 16
>KOG1991|consensus
Probab=98.50 E-value=2.4e-06 Score=77.91 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcchhhHhh-----hhccCHhhHHHHHHHHHHHHhcCCchhHHHH
Q psy15255 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFIEI-----YSKLAVNDQNNLKSQIILLLQTCDNDNIRRK 63 (199)
Q Consensus 1 ~~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~-----~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~ 63 (199)
+|++++.+.+.++||.|++-|||.+.++|... =..++++.|..||..++..+.. ....+|..
T Consensus 42 LqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvq 108 (1010)
T KOG1991|consen 42 LQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQ 108 (1010)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHH
Confidence 36778888889999999999999999984221 1127899999999999999998 33344443
No 17
>PRK09687 putative lyase; Provisional
Probab=98.39 E-value=1e-05 Score=65.91 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+..++.+ +++.+|..++.+.|.+...- ..=++.++. |..++..++++.||..++..++.+....
T Consensus 57 ~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~------~~~~~a~~~-----L~~l~~~D~d~~VR~~A~~aLG~~~~~~-- 122 (280)
T PRK09687 57 RLAIELCSS-KNPIERDIGADILSQLGMAK------RCQDNVFNI-----LNNLALEDKSACVRASAINATGHRCKKN-- 122 (280)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhcCCCc------cchHHHHHH-----HHHHHhcCCCHHHHHHHHHHHhcccccc--
Confidence 345566677 89999999999999874210 001122332 2234334889999999999988764311
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
....+.+++.+...+.|+++.||..|..+++.+-. ...++.+..++.|+ |++||..|.
T Consensus 123 ---~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~-~~~VR~~A~ 180 (280)
T PRK09687 123 ---PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDP-NGDVRNWAA 180 (280)
T ss_pred ---cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCC-CHHHHHHHH
Confidence 22357788888899999999999999999986531 22445667788897 999998875
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.24 E-value=9.5e-06 Score=53.97 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=60.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|++.+..++++.+|..++.+++.+ .-++.++.+.++++|+++.+|..|+.+++.+-. +.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~ 62 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PE 62 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HH
Confidence 556674489999999988877632 235789999999999999999999999998731 33
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+.+...++++++..||.+|+
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHH
Confidence 4455666777754777887775
No 19
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.22 E-value=4.1e-06 Score=51.07 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 148 TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 148 ~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
|.+|..|+.+|+.+++..++.+.++.+.+++.+..+++|+ +++||..|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~ 49 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAA 49 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 6899999999999988888888899999999999999998 889999887
No 20
>KOG0211|consensus
Probab=98.16 E-value=3.4e-05 Score=70.24 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhcchhh-----------HhhhhccC-HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc
Q psy15255 11 VEERQMSAVLLRKIFSTDF-----------IEIYSKLA-VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 78 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~-----------~~~~~~l~-~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~ 78 (199)
+..|..--.+++++...+| ...|..++ +..|..++...-+.-.+ .+++||+.+|+-.|.+++.+..
T Consensus 193 ~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d-~~~~Vr~~~a~~l~~~a~~~~~- 270 (759)
T KOG0211|consen 193 EKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQD-DTPMVRRAVASNLGNIAKVLES- 270 (759)
T ss_pred HHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccc-cchhhHHHHHhhhHHHHHHHHH-
Confidence 3446666667777665543 56677787 77888888888888888 9999999999999999988755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 79 AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 79 ~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
...|.++++. +..+.. ++..+||..|.+....+...+.++ ...-..+.+.+++...|++|.+|......+
T Consensus 271 --~~~~s~v~~~-----~~~L~~-DdqdsVr~~a~~~~~~l~~l~~~~--~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~ 340 (759)
T KOG0211|consen 271 --EIVKSEVLPT-----LIQLLR-DDQDSVREAAVESLVSLLDLLDDD--DDVVKSLTESLVQAVEDGSWRVSYMVADKF 340 (759)
T ss_pred --HHHHhhccHH-----Hhhhhh-cchhhHHHHHHHHHHHHHHhcCCc--hhhhhhhhHHHHHHhcChhHHHHHHHhhhh
Confidence 4455555553 445666 788999999999999888765432 145567999999999999999999999999
Q ss_pred HhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 159 TSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 159 ~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
..+.+.++++. ......+.+...++|. ..++|.++
T Consensus 341 ~~L~~~~~~~~--~~~~~~~~~~~l~~~~-~~e~r~a~ 375 (759)
T KOG0211|consen 341 SELSSAVGPSA--TRTQLVPPVSNLLKDE-EWEVRYAI 375 (759)
T ss_pred hhHHHHhcccc--CcccchhhHHHHhcch-hhhhhHHh
Confidence 99998887732 2234445555666775 66777654
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.13 E-value=0.00031 Score=61.76 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
+.+...|.++-+.+......+ ++.--.+-+.+.+-|.+ +++.+|.-+-++++.+... ...+.+
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~---------~~~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~-------~~~~~l 115 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHED---------PELLILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP-------EMAEPL 115 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTS---------HHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH-------HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc-------chhhHH
Confidence 356677777777777666554 33334566677777888 8999998888888887622 233444
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE-FLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~-ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.+. +.+++. ++++.||++|+.++..+....++ ..+. +++.+.+++.|+++.++.+|+.++..+ ..-+
T Consensus 116 ~~~-----v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~-----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 116 IPD-----VIKLLS-DPSPYVRKKAALALLKIYRKDPD-----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp HHH-----HHHHHH-SSSHHHHHHHHHHHHHHHHHCHC-----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred HHH-----HHHHhc-CCchHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 444 556777 89999999999999998876543 3333 789999999999999999999999998 2111
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 167 NQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 167 ~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+........+...+.+.+.++ +|-++..+++
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~ 214 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDP-DPWLQIKILR 214 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhhccccc-chHHHHHHHH
Confidence 111134455555556566776 7777665543
No 22
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.11 E-value=1.6e-05 Score=60.46 Aligned_cols=86 Identities=13% Similarity=0.216 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l 184 (199)
++.+|..+.-+++.++...+. ..+..+|.++.++.|+++.||..|+.++..+... ++....+.+...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467899988888888865542 4556689999999999999999999999998753 33334455645555688
Q ss_pred CCCCCHHHhhhhhcC
Q psy15255 185 LPPNPYSVQALQLKF 199 (199)
Q Consensus 185 ~d~~~~~Vr~~A~~f 199 (199)
.|+ |++||..|..|
T Consensus 73 ~D~-~~~Ir~~A~~~ 86 (178)
T PF12717_consen 73 VDE-NPEIRSLARSF 86 (178)
T ss_pred cCC-CHHHHHHHHHH
Confidence 997 99999988643
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.09 E-value=0.00013 Score=55.57 Aligned_cols=112 Identities=10% Similarity=0.168 Sum_probs=76.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 136 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll 136 (199)
++.||..+.-++|.++... |.++..++. .+..++. ++++.||..|+.++..++.... ....+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---------~~~ve~~~~-~l~~~L~-D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---------PNLVEPYLP-NLYKCLR-DEDPLVRKTALLVLSHLILEDM----IKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---------cHHHHhHHH-HHHHHHC-CCCHHHHHHHHHHHHHHHHcCc----eeehhhhh
Confidence 4667887777777777543 333221111 1556777 8999999999999988775422 34556777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHh
Q psy15255 137 QFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQC 183 (199)
Q Consensus 137 ~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~ 183 (199)
..+..++.|+++.+|..|..+|..+.....++ +..+...++..+..+
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 88888999999999999999999998774443 344444444444444
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.06 E-value=0.00019 Score=67.42 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 137 QFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 137 ~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.|..++.|+++.||..|..+|+.+- . -....+.+...+.|+ |++||.+|.
T Consensus 841 ~~L~~~L~D~~~~VR~~A~~aL~~~~------~---~~~a~~~L~~al~D~-d~~Vr~~A~ 891 (897)
T PRK13800 841 PALVEALTDPHLDVRKAAVLALTRWP------G---DPAARDALTTALTDS-DADVRAYAR 891 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccC------C---CHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44444444444444444444444430 0 012233445566675 777776664
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.05 E-value=0.00012 Score=48.46 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=64.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+++++.+|..++.+++.+. =++.++. |+.++. ++++.||..++..++.+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~-----L~~~l~-d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPA-----LIELLK-DEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHH-----HHHHHT-SSSHHHHHHHHHHHHCCH------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhC------
Confidence 57888855699999999888888332 2455665 556776 899999999988887542
Q ss_pred hccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy15255 127 AGNNLWPEFLQFLFQCANSD-NTTLKESALRLFT 159 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~ 159 (199)
.++.++.+.+++.++ +..+|..|+.+++
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 266788888888765 6778999999875
No 26
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=98.04 E-value=0.00036 Score=63.68 Aligned_cols=110 Identities=13% Similarity=0.211 Sum_probs=80.3
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHh-hhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIE-IYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGN 81 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~-~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~ 81 (199)
+..+...+..+|..|.+-+||.++.+|.+ .-+.+.++.+..||..++.++-+ .+....-+.|.+++-+|+..++
T Consensus 44 I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP---- 118 (947)
T COG5657 44 INLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP---- 118 (947)
T ss_pred HHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc----
Confidence 44555678899999999999999999633 33567788888999999999998 4444455889999999988765
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
..||.|+|. |+..++ +.+-..-.+...++.+|.+..
T Consensus 119 deWpTL~~D-----L~~~Ls-~~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 119 DEWPTLVPD-----LLSLLS-EKDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred ccchhHHHH-----HHhhhc-ccchHHHHHHHHHHHHHHHHH
Confidence 689999998 556666 333223333445555555544
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.98 E-value=0.00015 Score=68.18 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|.--|...-.. ..++.++.| +++.||..++..++.+... .+.-.
T Consensus 726 ~d~~VR~~Av~aL~~~~~~------------------~~l~~~l~D-~~~~VR~~aa~aL~~~~~~---------~~~~~ 777 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDV------------------ESVAGAATD-ENREVRIAVAKGLATLGAG---------GAPAG 777 (897)
T ss_pred CCHHHHHHHHHHHhcccCc------------------HHHHHHhcC-CCHHHHHHHHHHHHHhccc---------cchhH
Confidence 5788999887777764110 125678888 8999999999988877422 11112
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+. |..++. ++++.||..++..+..+.. -+.+.+.+.+.+.|++|.||..|..+|+.+..
T Consensus 778 ~~-----L~~ll~-D~d~~VR~aA~~aLg~~g~----------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----- 836 (897)
T PRK13800 778 DA-----VRALTG-DPDPLVRAAALAALAELGC----------PPDDVAAATAALRASAWQVRQGAARALAGAAA----- 836 (897)
T ss_pred HH-----HHHHhc-CCCHHHHHHHHHHHHhcCC----------cchhHHHHHHHhcCCChHHHHHHHHHHHhccc-----
Confidence 21 334666 8889999998887764321 13345668888999999999999999987542
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..-.+.+..++.|+ +..||.+|.
T Consensus 837 -----~~a~~~L~~~L~D~-~~~VR~~A~ 859 (897)
T PRK13800 837 -----DVAVPALVEALTDP-HLDVRKAAV 859 (897)
T ss_pred -----cchHHHHHHHhcCC-CHHHHHHHH
Confidence 12235666788898 999998885
No 28
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.98 E-value=1.4e-05 Score=42.82 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
++|.+.++++|+++.||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
No 29
>KOG1824|consensus
Probab=97.94 E-value=0.00016 Score=66.26 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH------------------------
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS------------------------ 94 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~------------------------ 94 (199)
.-.+.++..+++++.+ |+..|+.+++.+.|.++.. .-|..+|+++.+
T Consensus 853 s~~~e~~~~iieaf~s-p~edvksAAs~ALGsl~vg--------nl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv 923 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNS-PSEDVKSAASYALGSLAVG--------NLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV 923 (1233)
T ss_pred CcchhhHHHHHHHcCC-ChHHHHHHHHHHhhhhhcC--------chHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc
Confidence 3445778899999999 9999999999999999853 333344433311
Q ss_pred --------HHHHHHh--hc-ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 95 --------QIILLLQ--TC-DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 95 --------~ll~~l~--~~-~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++.++- |+ .....|.-.++|++.++... -..|+|.|...+.++++..|..++.++-....
T Consensus 924 d~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e--------pesLlpkL~~~~~S~a~~~rs~vvsavKfsis 995 (1233)
T KOG1824|consen 924 DGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE--------PESLLPKLKLLLRSEASNTRSSVVSAVKFSIS 995 (1233)
T ss_pred chhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC--------hHHHHHHHHHHhcCCCcchhhhhhheeeeeec
Confidence 1222221 22 23445777777777766432 25799999999999999999999988776665
Q ss_pred hhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 164 IFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-+..+.++...-+.-+...++|| |.+||..|+
T Consensus 996 d~p~~id~~lk~~ig~fl~~~~dp-Dl~VrrvaL 1028 (1233)
T KOG1824|consen 996 DQPQPIDPLLKQQIGDFLKLLRDP-DLEVRRVAL 1028 (1233)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCC-chhHHHHHH
Confidence 555556666666666777889998 999998875
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.92 E-value=4.9e-05 Score=52.94 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=71.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-HH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-YL 173 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~ 173 (199)
++.++. ++++.+|..++.++..++....+.. .... ...++.+.+.+.++++.++..++.+++.++...+..... ..
T Consensus 12 l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 89 (120)
T cd00020 12 LVSLLS-SSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89 (120)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 445666 7778999999999988876422100 0111 256777777888899999999999999999765433222 22
Q ss_pred HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 174 VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 174 ~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+++.+...++++ +.+++..|+.
T Consensus 90 ~g~l~~l~~~l~~~-~~~~~~~a~~ 113 (120)
T cd00020 90 AGGVPKLVNLLDSS-NEDIQKNATG 113 (120)
T ss_pred CCChHHHHHHHhcC-CHHHHHHHHH
Confidence 45788888899997 8999988763
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.90 E-value=0.00031 Score=48.07 Aligned_cols=70 Identities=11% Similarity=0.247 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
+++.++.+++. ++.++. +++..||..||+++..|+....+.. ..+.++++..+++.+.|+++.||.+|..
T Consensus 21 ~~~~l~~Il~p-VL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 21 ISKYLDEILPP-VLKCFD-DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHH-HHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 44444444433 557888 9999999999999999987665432 3588999999999999999999988743
No 32
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.89 E-value=0.00049 Score=59.24 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHH--------HHHHHhhcccHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQ--------IILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~--------ll~~l~~~~~~~vr~~a~~ 114 (199)
.+-..|++.|.+ +.+...+|...+.+..-. +.--+..|-..++-+-||. +++.+. +.+...|..-..
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~-~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~-~~~~~~k~~yL~ 345 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDS-DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK-EADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc-HHhcCccccchhhhHHhHHHHHHHHHHHHHHHh-hcChhhHHHHHH
Confidence 445558888887 566777777777776551 1000223433444444442 555555 444446777777
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
.++.+....+..-...+.++++|.+.+++.-+|+.++.+++.++..+++.-++-+.+|.+.+++.+..
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 88888888775445578999999999999999999999999999999998876678899999888764
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.85 E-value=0.00045 Score=60.75 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=77.2
Q ss_pred CHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 37 AVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 37 ~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
+++.-..+-..+.+++.+ +++.||++++.++..+.+..-+.-... |-+. +..++. ++++.|+..|+.++
T Consensus 108 ~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~--------l~~lL~-d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVEDE-LIPK--------LKQLLS-DKDPSVVSAALSLL 176 (526)
T ss_dssp SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHH--------HHHHTT-HSSHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHHH-HHHH--------Hhhhcc-CCcchhHHHHHHHH
Confidence 455667788888999998 999999999999999998732211111 3332 334665 88899999988888
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
..+ .. .+.......+.+...+.+.+.+++|-.+...++++..++.
T Consensus 177 ~~i-~~-~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 177 SEI-KC-NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp HHH-HC-THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHH-cc-CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 887 21 1111113456666666666677777777777777776654
No 34
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=97.85 E-value=0.00021 Score=52.03 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh------------
Q psy15255 58 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID------------ 125 (199)
Q Consensus 58 ~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~------------ 125 (199)
+.||+++|.+++.+++...+ ..||++++. +++.++ .++........++..+...+.+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P----~~Wp~~l~~-----l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~ 70 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP----QQWPDFLED-----LLQLLQ--SSPQHLELVLRILRILPEEITDFRRSSLSQERRR 70 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TTSTTHHHH-----HHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh----hhCchHHHH-----HHHHhc--cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHH
Confidence 46899999999999999875 679999887 344444 2233333344444444333321
Q ss_pred ---hhccCChHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 126 ---DAGNNLWPEFLQFLFQCANSDN----TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 126 ---~~~~~~~~~ll~~l~~~~~~~~----~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.......|.+++.+.+.++... ......+++++...+...+...... +.+++.+.+.++++ +.+.+|++
T Consensus 71 ~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~---~~~~~A~~ 146 (148)
T PF08389_consen 71 ELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP---ELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC---CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH---HHHHHHHH
Confidence 0011345778888888887542 7889999999999998776553111 23666777777665 35777664
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=1.7e-05 Score=48.28 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
+.+|..++.+++.++....+ ....+.+++++.|..+++|+++.||..|+.+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999876644332 23458899999999999999999999999999864
No 36
>KOG1240|consensus
Probab=97.80 E-value=0.00062 Score=63.93 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhh----HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC--------
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVND----QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-------- 77 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~----~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~-------- 77 (199)
...+|..|..-|.+++..- ..+++.+ ++||-=.|-..+.+.....||-..|..+|.||+....
T Consensus 475 ~a~Vra~Al~Tlt~~L~~V-----r~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~ 549 (1431)
T KOG1240|consen 475 EADVRATALETLTELLALV-----RDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQEL 549 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhc-----cCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678999988888877431 1122211 2566666666666667788999999999999987621
Q ss_pred ------cC-CCCChHHH-----HHH---HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHH
Q psy15255 78 ------DA-GNNLWPEF-----LQN---NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQC 142 (199)
Q Consensus 78 ------~~-~~~~WpeL-----l~~---~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~ 142 (199)
.+ ..++-|+. ++. .|.+....++. ++.+-||...++.|+.+...+.. .+.=+-||+.|...
T Consensus 550 ~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 550 RQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITF 625 (1431)
T ss_pred HhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHH
Confidence 01 11122322 223 33445555665 77789999989998887764432 23345699999999
Q ss_pred hcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 143 ANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 143 ~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++|.||.+|-+-+.-+..++-+++..- --+.|++++.+++.|+ ++-|-..|+
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~-EE~Viv~aL 677 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDG-EEAVIVSAL 677 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCc-chhhHHHHH
Confidence 999999999999999988887776542 2257788999999998 777766654
No 37
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.79 E-value=0.0015 Score=57.92 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc---------------CCCCChHHHHHHHHHH------------
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD---------------AGNNLWPEFLQNNLKS------------ 94 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~---------------~~~~~WpeLl~~~ik~------------ 94 (199)
..|-+..|..|.+ +.+.||..+++++|.|++.+--. .-.+.+||.++..+|+
T Consensus 603 ~~ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 603 SMIVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5688899999999 99999999999999998766211 1257889988877654
Q ss_pred ----------------------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 95 ----------------------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 95 ----------------------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
+|+.++. +.+..+|+.|.++.+-|+..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhhhHHhh
Confidence 1677777 67889999998888877776
Q ss_pred hHhhh--------cc--------------------CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 123 LIDDA--------GN--------------------NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 123 ~~~~~--------~~--------------------~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
+.+.. +. ..--..+|.+..=-..|+..|+...+++++-+.|+.++.-..|.-
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy 840 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY 840 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 64310 00 011246777766666788899999999999999999988788999
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|.+++-.+|.|. |+--|..|.
T Consensus 841 ~itPlleDAltDr-D~vhRqta~ 862 (975)
T COG5181 841 SITPLLEDALTDR-DPVHRQTAM 862 (975)
T ss_pred HhhHHHHhhhccc-chHHHHHHH
Confidence 9999999999996 887776654
No 38
>KOG1242|consensus
Probab=97.78 E-value=0.00097 Score=58.62 Aligned_cols=144 Identities=16% Similarity=0.110 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
.+..+-..+-..+++..+...|. .+-.+.+.+-..+- ...=|.+ +|. ++..+. +..+.||+.+.+++
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re-~~~~a~~~~~~~Lg---~~~EPyiv~~lp~-----il~~~~-d~~~~Vr~Aa~~a~ 240 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNRE-AALLAFEAAQGNLG---PPFEPYIVPILPS-----ILTNFG-DKINKVREAAVEAA 240 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHH-HHHHHHHHHHHhcC---CCCCchHHhhHHH-----HHHHhh-ccchhhhHHHHHHH
Confidence 33455566667777755555554 34344444333332 2222333 443 566776 78889999999988
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
-.+.+.+.. ...+.++|.+...+.+..|+.+.++++.++.+.+..++++......+++.+...|.|. .++||.++
T Consensus 241 kai~~~~~~----~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~ 315 (569)
T KOG1242|consen 241 KAIMRCLSA----YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAG 315 (569)
T ss_pred HHHHHhcCc----chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHH
Confidence 888876653 4566777777777776699999999999998888888888888999999999999997 99999887
Q ss_pred hc
Q psy15255 197 LK 198 (199)
Q Consensus 197 ~~ 198 (199)
.+
T Consensus 316 ~~ 317 (569)
T KOG1242|consen 316 IE 317 (569)
T ss_pred HH
Confidence 53
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.77 E-value=0.0011 Score=58.59 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
...++..+..+|.+ +++.||.-++..++.+++..-.....-.=+++++. ++.++. +++..|...|..++..++
T Consensus 75 ~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~-----i~~~L~-~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 75 LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL-----IIQCLR-DPDLSVAKAAIKALKKLA 147 (503)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH-----HHHHHc-CCcHHHHHHHHHHHHHHh
Confidence 56778889999999 99999999999888776443100000011223333 566887 899999999999998888
Q ss_pred HHhHhhhccCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 121 RNLIDDAGNNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 121 ~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+..... ..- -+.+++.|.+.+..++..+|.-++.+++.++..-++.+.... ..+++.+...+.++ |.=|+..|++
T Consensus 148 ~~~~~~--~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnale 224 (503)
T PF10508_consen 148 SHPEGL--EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALE 224 (503)
T ss_pred CCchhH--HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHH
Confidence 643210 000 122378888888777888898899999998766544432222 24777777788885 9889988875
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.77 E-value=0.00013 Score=50.80 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
+-..+++.|.+ ++..+|..++.+++.++...-+. -..+.+|. ++.++. ++++.++..++.++..+
T Consensus 8 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~---------l~~~l~-~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPA---------LVQLLK-SEDEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH---------HHHHHh-CCCHHHHHHHHHHHHHH
Confidence 45567888887 77899999999999888652000 00133333 445666 78899999999999988
Q ss_pred HHHhHhhhccCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 120 ARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 120 ~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
+....+. ....+. .+++.+.+.+.+++..+|+.++.++..+++
T Consensus 77 ~~~~~~~-~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 77 AAGPEDN-KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ccCcHHH-HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7643221 011232 378889999999999999999999998864
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.76 E-value=0.00071 Score=59.66 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
++++.+|.++.-.|++....+ +..-..+.+ ..+-..++.+|.+ ++..|...++.++..+++.. ..-..+
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~---~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~------~~~~~l 156 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHS-EGAAQLLVD---NELLPLIIQCLRD-PDLSVAKAAIKALKKLASHP------EGLEQL 156 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCC-HHHHHHhcC---ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCc------hhHHHH
Confidence 467899999988888877543 111122211 2355668999999 99999999999999998643 111222
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
++.-....|-.++. .+++.+|.++.+++..+++...+.. ...+ ..+++.+.+.+.++|.-+|..++.+++.+++
T Consensus 157 ~~~~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 157 FDSNLLSKLKSLMS-QSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred hCcchHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 22112223445555 5578899999999999987655421 1122 2389999999999999999999999999998
No 42
>KOG2956|consensus
Probab=97.76 E-value=0.0012 Score=56.47 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=99.4
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 82 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~ 82 (199)
++.+. .++..|-+|--+|+..+......+++ .-+..-..+|++=.+ +.+.|-+.+.+.+..++....+..
T Consensus 337 vL~d~-~~~~~k~laLrvL~~ml~~Q~~~l~D-----stE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 337 VLSDS-EDEIIKKLALRVLREMLTNQPARLFD-----STEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHccc-hhhHHHHHHHHHHHHHHHhchHhhhc-----hHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchh---
Confidence 45555 67788888888888887654222222 223445668888888 566565555655555554443310
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
. +.. +-.++.. .+...-..+...+..++..+.-+.+....|++.|.++++..+++..||.+|+.+++++.
T Consensus 407 ---~-I~~-----i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 ---C-IVN-----ISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---H-HHH-----HhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 0 110 2223442 23333334445666666555434456788999999999999999999999999999999
Q ss_pred Hhhh-hhhHHHHHHH
Q psy15255 163 EIFG-NQESTYLVVI 176 (199)
Q Consensus 163 e~~~-~~l~~~~~~l 176 (199)
..++ +.+.||...+
T Consensus 477 ~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 477 NRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHhHHhhhhHhhhc
Confidence 9999 6688876544
No 43
>KOG0213|consensus
Probab=97.71 E-value=0.0024 Score=57.75 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc---------------CCCCChHHHHHHHHHH------------
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD---------------AGNNLWPEFLQNNLKS------------ 94 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~---------------~~~~~WpeLl~~~ik~------------ 94 (199)
..|.+..|..|.+ +++.||.++++++|.|+..+-.. .-.+.+||.++..+++
T Consensus 798 pqi~stiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 798 PQICSTILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 3566778888888 99999999999999998776322 1257889988765532
Q ss_pred ----------------------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 95 ----------------------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 95 ----------------------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
+|+.++. .-...+|+.+.++.+.|+..
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHh
Confidence 2777777 67788999999999988877
Q ss_pred hHhhh--------cc--------------------CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 123 LIDDA--------GN--------------------NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 123 ~~~~~--------~~--------------------~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
+.+.. +. ..--..+|.|+.=-.-|+..|+...+++++-+.|+.++.-..|+-
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 65410 00 011246677766666678899999999999999999887788999
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+.+++-.+|.|. |+--|..|+
T Consensus 1036 av~PlleDAlmDr-D~vhRqta~ 1057 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDR-DLVHRQTAM 1057 (1172)
T ss_pred HhhHHHHHhhccc-cHHHHHHHH
Confidence 9999999999996 887776654
No 44
>KOG0166|consensus
Probab=97.71 E-value=0.00066 Score=59.18 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH----HHHHHHhhcccHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS----QIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~----~ll~~l~~~~~~~vr~~a~~ 114 (199)
+.-..+-..|..+|.+ ++++|..-+|-+++-|. ..|+|-.+..++. .|+.++. .+++.++.-|+.
T Consensus 233 ~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLs---------dg~ne~iq~vi~~gvv~~LV~lL~-~~~~~v~~PaLR 301 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHS-TDEEVLTDACWALSYLT---------DGSNEKIQMVIDAGVVPRLVDLLG-HSSPKVVTPALR 301 (514)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHh---------cCChHHHHHHHHccchHHHHHHHc-CCCcccccHHHh
Confidence 4445666778888888 99999999999999885 4566766666654 4778888 777788877788
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHH
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~V 192 (199)
+++.|+...-.....---..++|.|..++. ++...+|..||-+++.|.---.++....+ ..+++.+..+++.. |.++
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~ 380 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDI 380 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHH
Confidence 887765432110000011347888888887 56667999999999999876555554443 37888899999997 8999
Q ss_pred hhhhh
Q psy15255 193 QALQL 197 (199)
Q Consensus 193 r~~A~ 197 (199)
|++|+
T Consensus 381 rKEAa 385 (514)
T KOG0166|consen 381 RKEAA 385 (514)
T ss_pred HHHHH
Confidence 99986
No 45
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0042 Score=55.35 Aligned_cols=185 Identities=14% Similarity=0.219 Sum_probs=112.3
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhh---cCc
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT-CDNDNIRRKICDAAAEVARNL---IDD 78 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~-e~~~~vR~~~~~~ia~la~~~---l~~ 78 (199)
++.++ .-++..-.|.-+|-++++.. |.-+|++.|..||+-..+.+-. ..+..||.+=-.++-.+=-.+ ++.
T Consensus 54 IL~~S-~~pqskyiALs~LdklIttk----Wkllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKq 128 (1053)
T COG5101 54 ILNNS-KLPQSKYIALSLLDKLITTK----WKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQ 128 (1053)
T ss_pred HHhcc-cCcchhhhHHHHHHHHHHhh----hhhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34445 56777778888888888888 9999999999999988887655 245567755444443332222 234
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--------HhhhccCChHHHHHHHHHHhc-CCCHH
Q psy15255 79 AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL--------IDDAGNNLWPEFLQFLFQCAN-SDNTT 149 (199)
Q Consensus 79 ~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~--------~~~~~~~~~~~ll~~l~~~~~-~~~~~ 149 (199)
++...||++.|.+|...=..+=-|+++-.|-+...+-+......- ..+......|+++++.++.+. +.++.
T Consensus 129 eWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~S 208 (1053)
T COG5101 129 EWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDES 208 (1053)
T ss_pred hcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChH
Confidence 567899999998664321222223333333222222221111111 111223577999999999986 45888
Q ss_pred HHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 150 LKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 150 vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
.-++.+..+-.+++.++-.. -|...|+..+.+.+.+..|.++.
T Consensus 209 Li~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~pd~r~~ 251 (1053)
T COG5101 209 LIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSMPDTRVA 251 (1053)
T ss_pred HHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccCCchhHH
Confidence 88899999888888876431 13355666665555542154444
No 46
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.66 E-value=0.0016 Score=51.11 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
..+-..|+..+++ +.+.+|..+..++-.+....- .-+.++.. .+..+.. +.++.+|..+++.+..++.
T Consensus 93 ~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~----~l~~~~~-~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 93 DILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLE----ILSQGLK-SKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHH----HHHHHTT--S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHH----HHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3455667777777 778889988888888875431 11344111 1333444 7889999999998888776
Q ss_pred HhH--hhhccC--ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 122 NLI--DDAGNN--LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 122 ~~~--~~~~~~--~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
... ...... ..+.+.+.+.+++.|+++.||++|-.++..+...+++.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 655 111122 24789999999999999999999999999998877654
No 47
>KOG2274|consensus
Probab=97.54 E-value=0.0013 Score=60.16 Aligned_cols=133 Identities=18% Similarity=0.315 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCCCCChHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPE 86 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe 86 (199)
+++..+|+.|..=||..-..+ .++..|-+...+.. +-..|.- +.++++..+. ++|.+
T Consensus 15 s~d~~vr~~AE~~l~qle~~~--------------~f~~aL~~va~~~~~sl~lRQ~----A~v~L~~yie----~hW~~ 72 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLELTE--------------GFGVALAEVAANKDASLPLRQI----ALVLLKRYIE----KHWSP 72 (1005)
T ss_pred CCChhHHHHHHHHHhccccch--------------HHHHHHHHHHhCcccCchHHHH----HHHHHHHHHH----HhCCC
Confidence 478899999988888765433 25666666666632 2233442 3366666654 34433
Q ss_pred H-------------HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHH
Q psy15255 87 F-------------LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKES 153 (199)
Q Consensus 87 L-------------l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~ 153 (199)
+ ++..|+..|++++- +++..+|..+..++..|+....+ +.||+++|++.+++++++...-..
T Consensus 73 ~~E~fr~~~~~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~~n~n~i~~ 147 (1005)
T KOG2274|consen 73 NFEAFRYPLIVSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSSGNENSIHG 147 (1005)
T ss_pred hHhhccCCCcccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhccchhhhhh
Confidence 2 56677888999988 88889999999999999987654 699999999999999988888899
Q ss_pred HHHHHHhhhHhhhh
Q psy15255 154 ALRLFTSVPEIFGN 167 (199)
Q Consensus 154 a~~~l~~i~e~~~~ 167 (199)
|++++..+...+..
T Consensus 148 am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
No 48
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.50 E-value=0.019 Score=43.09 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=104.8
Q ss_pred hhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHH--HHHHHHHhhcccHHHH
Q psy15255 32 IYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLK--SQIILLLQTCDNDNIR 109 (199)
Q Consensus 32 ~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik--~~ll~~l~~~~~~~vr 109 (199)
++...+......++..+.+.|.+ +++.-|..-+..+..+... +.|.-+...+-. +.++..++..+.+.++
T Consensus 14 ~~~~~~~~~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~-------~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~ 85 (165)
T PF08167_consen 14 LLSAPSKSALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQ-------CSWEILLSHGSQWLRALLSILEKPDPPSVL 85 (165)
T ss_pred hhcccCHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34445677788899999999999 8888888766666666533 345444333221 3466788755667788
Q ss_pred HHHHHHHHHHHHHhHh------hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHh
Q psy15255 110 RKICDAAAEVARNLID------DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQC 183 (199)
Q Consensus 110 ~~a~~~i~~i~~~~~~------~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~ 183 (199)
..++.++..|.....+ ....+..|.+++.+.+..++ ....+.++.++..++...+..+.||.+.|-.++...
T Consensus 86 ~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 86 EAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 8899999888876542 11246778889999988876 566889999999999988888889988888777665
Q ss_pred h
Q psy15255 184 L 184 (199)
Q Consensus 184 l 184 (199)
+
T Consensus 164 l 164 (165)
T PF08167_consen 164 L 164 (165)
T ss_pred h
Confidence 4
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=97.50 E-value=0.0082 Score=55.26 Aligned_cols=130 Identities=8% Similarity=0.048 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.+..+.+.+.... .++.--..-+.+.+-+.+ +++.+|--+-.+++.|-- ....+.+.
T Consensus 80 ~d~elKKLvYLYL~~ya~~---------~pelalLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~-------~~i~e~l~ 142 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARL---------QPEKALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV-------SSVLEYTL 142 (746)
T ss_pred CCHHHHHHHHHHHHHHccc---------ChHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc-------HHHHHHHH
Confidence 4566666666666655432 233333456667777777 888888766555554421 12223333
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
+. +.+++. +.++-||+.|+-++..+....++.. .-..+++.+.+++.|+|+.|...|+.++..+.+.
T Consensus 143 ~~-----lkk~L~-D~~pYVRKtAalai~Kly~~~pelv---~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 143 EP-----LRRAVA-DPDPYVRKTAAMGLGKLFHDDMQLF---YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HH-----HHHHhc-CCCHHHHHHHHHHHHHHHhhCcccc---cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 22 445666 8889999999888888776443210 1112455666778889999999999888888754
No 50
>KOG1967|consensus
Probab=97.49 E-value=0.001 Score=61.03 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=80.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+...+. ......|+.-...+.++....+.....+..|.|+|.+.|++.-+|..+|.++++++..+....+.-+..|.++
T Consensus 872 l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T 950 (1030)
T KOG1967|consen 872 LVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST 950 (1030)
T ss_pred HHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH
Confidence 455555 3445667776777777777776544568899999999999999999999999999999887776656789999
Q ss_pred HHHHHHHhhCCCCC---HHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNP---YSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~---~~Vr~~A~~ 198 (199)
+++.+...-.|+ | ..||..|++
T Consensus 951 lvp~lLsls~~~-~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 951 LVPYLLSLSSDN-DNNMMVVREDALQ 975 (1030)
T ss_pred HHHHHHhcCCCC-CcchhHHHHHHHH
Confidence 999999887776 4 568888764
No 51
>KOG0211|consensus
Probab=97.46 E-value=0.0034 Score=57.53 Aligned_cols=125 Identities=10% Similarity=0.150 Sum_probs=92.2
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP 133 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~ 133 (199)
....+|..++.....++... ...|... .+. ++.+.. .++...|.....++..++..+... -.-.
T Consensus 530 ~v~~Ir~~aa~~l~~l~~~~-----G~~w~~~~~i~k-----~L~~~~-q~~y~~R~t~l~si~~la~v~g~e---i~~~ 595 (759)
T KOG0211|consen 530 HVYSIREAAARNLPALVETF-----GSEWARLEEIPK-----LLAMDL-QDNYLVRMTTLFSIHELAEVLGQE---ITCE 595 (759)
T ss_pred hHHHHHHHHHHHhHHHHHHh-----CcchhHHHhhHH-----HHHHhc-CcccchhhHHHHHHHHHHHHhccH---HHHH
Confidence 34577888777777777654 3788765 443 333443 456788999889998877654321 2346
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|+|.+.++..|+.+.||-.+++.+..+...+...... ..|.+.+...-.|+ |.+||..|.
T Consensus 596 ~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~--~~v~pll~~L~~d~-~~dvr~~a~ 656 (759)
T KOG0211|consen 596 DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD--EEVLPLLETLSSDQ-ELDVRYRAI 656 (759)
T ss_pred HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH--HHHHHHHHHhccCc-ccchhHHHH
Confidence 79999999999999999999999999999888665433 57777777777786 899998764
No 52
>KOG1248|consensus
Probab=97.42 E-value=0.0085 Score=56.46 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
+..+.-..|.+.++..+++ .....|.....++..|.+.+ ..| -++++.+|...++.. . +-+...|+.+.+
T Consensus 690 ~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~------~~e~~~~i~k~I~EvIL~~-K-e~n~~aR~~Af~ 760 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLL------SAEHCDLIPKLIPEVILSL-K-EVNVKARRNAFA 760 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHhc-c-cccHHHHhhHHH
Confidence 3345557889999999998 77788888888888888664 233 456777776666666 4 778888999999
Q ss_pred HHHHHH--HHhHhhhccC----ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCC
Q psy15255 115 AAAEVA--RNLIDDAGNN----LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 115 ~i~~i~--~~~~~~~~~~----~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~ 187 (199)
++..|. ....+ .+.. ..++++..+..++...+..++-+.+-+++.+.....+.+ ..+...++.++..+++..
T Consensus 761 lL~~i~~i~~~~d-~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 761 LLVFIGAIQSSLD-DGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHHHHHHHHhhhc-ccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 998887 33332 2332 467788888888776677666555677777766655555 467888999999999997
Q ss_pred CCHHHhhhhhcC
Q psy15255 188 NPYSVQALQLKF 199 (199)
Q Consensus 188 ~~~~Vr~~A~~f 199 (199)
.++|+.+|+.|
T Consensus 840 -sreI~kaAI~f 850 (1176)
T KOG1248|consen 840 -SREIAKAAIGF 850 (1176)
T ss_pred -CHHHHHHHHHH
Confidence 99999999987
No 53
>KOG1967|consensus
Probab=97.32 E-value=0.0015 Score=59.89 Aligned_cols=108 Identities=10% Similarity=0.155 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDN---TTLKESALRLFT 159 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~~vr~~a~~~l~ 159 (199)
.-|.|+|- |++++. -++..+|..+.+++-........ -...+...++|.+...-.|.+ ..||+.|+++++
T Consensus 906 ~~~~LlPL-----LLq~Ls-~~D~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~ 978 (1030)
T KOG1967|consen 906 QFPMLLPL-----LLQALS-MPDVIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLN 978 (1030)
T ss_pred chhhHHHH-----HHHhcC-CCccchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHH
Confidence 34566665 777888 68888988888888766654332 123688999999999888775 679999999999
Q ss_pred hhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 160 SVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 160 ~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+..+.. +.+|.+.++..+..++.|+ ---||.+|+.
T Consensus 979 aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~ 1017 (1030)
T KOG1967|consen 979 ALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVD 1017 (1030)
T ss_pred HHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHH
Confidence 999988765 7899999999999999998 6679999863
No 54
>KOG1943|consensus
Probab=97.24 E-value=0.011 Score=55.40 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAE 118 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~ 118 (199)
+.-+.+-..|+++|.+ .+..||..+|.-+|.+...+ -++|....|++.+ .++.-.++++.=|.+|-.+++
T Consensus 337 eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rl--------p~~Lad~vi~svi-d~~~p~e~~~aWHgacLaLAE 406 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRL--------PPELADQVIGSVI-DLFNPAEDDSAWHGACLALAE 406 (1133)
T ss_pred HHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccC--------cHHHHHHHHHHHH-HhcCcCCchhHHHHHHHHHHH
Confidence 5557888999999999 99999999999999998665 2677666665443 355423356777888999998
Q ss_pred HHHHhHhhhccCChHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHH-HHHHHHhhCCCC
Q psy15255 119 VARNLIDDAGNNLWPEFLQFLFQCANSD--------NTTLKESALRLFTSVPEIFGNQ-ESTYLVVI-KQMLQQCLLPPN 188 (199)
Q Consensus 119 i~~~~~~~~~~~~~~~ll~~l~~~~~~~--------~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l-~~~l~~~l~d~~ 188 (199)
++..-.- .....++++|.+.+++.-+ ...||.+||.+.-++.....++ +.|+...| ...+..++=|+
T Consensus 407 LA~rGlL--lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr- 483 (1133)
T KOG1943|consen 407 LALRGLL--LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR- 483 (1133)
T ss_pred HHhcCCc--chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-
Confidence 8864321 1234578999999888622 4569999999999998766554 78887755 55667777887
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
+..+|.+|.
T Consensus 484 evncRRAAs 492 (1133)
T KOG1943|consen 484 EVNCRRAAS 492 (1133)
T ss_pred hhhHhHHHH
Confidence 888887763
No 55
>KOG1824|consensus
Probab=97.24 E-value=0.013 Score=54.38 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
--..+-..++--+++ +-..||++++..+|.++... ++..+-++... ++..+...+++..-+.-..+++.|
T Consensus 171 fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~----~~~ly~~li~~-----Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 171 FHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSC----NRDLYVELIEH-----LLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred hHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHH-----HHhccCCCCchHHHHHHHHHHHHH
Confidence 444555556666676 78899999999999998664 24556666665 555666445555555556888888
Q ss_pred HHHhHhhhccCChHHHHHHHHHHh---cCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhC
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCA---NSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLL 185 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~---~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~ 185 (199)
+..... ....+.+.+.|++.+-. +..+-..|+..++++..|....++++.+|.+.|++.+...+.
T Consensus 241 ~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 241 CRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred HHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhc
Confidence 876542 23578899999999988 555778999999999999999999999999999888876654
No 56
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.21 E-value=0.0086 Score=44.91 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDND-NIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQT-CDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~-~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~-~~~~~vr~~a~~~i~~i~ 120 (199)
.||..|+.+|..+..+ ..-+..|++++.++-+.+. ..++.|+||.. ++.+ ..+.. .+|..+...+-
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~-~~~~~W~eL~d---------~Ils~~~~e~--~kA~~IF~~L~ 70 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFD-LQEGGWDELSD---------CILSLSENEP--VKAFHIFICLP 70 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHh-cCCCCchhHHH---------HHHHhhccch--HHHHHHHHhCC
Confidence 4788999999997654 5678889999999988863 23799999975 3321 11112 23445554444
Q ss_pred HHhHhhhccCChHHHHHHHHHHhcCC---CHHHHHHHHHH-HHhhhHhhh
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCANSD---NTTLKESALRL-FTSVPEIFG 166 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~-l~~i~e~~~ 166 (199)
..+.+++..+....|+|.+.+.+.+| +......|+.. +......++
T Consensus 71 ~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e 120 (174)
T PF04510_consen 71 MPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLE 120 (174)
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhc
Confidence 23334455567888999999999887 33333445532 333444443
No 57
>KOG1059|consensus
Probab=97.21 E-value=0.02 Score=51.70 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHH
Q psy15255 11 VEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQN 90 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~ 90 (199)
+.+|-=|-.+|=+.+- +-|+..|..+. .|-+-|.| |++.|-.++-.+|.+|||..- ..+=+|.|.
T Consensus 158 pYvRKkAIl~lykvFL--------kYPeAlr~~Fp-rL~EkLeD-pDp~V~SAAV~VICELArKnP-----knyL~LAP~ 222 (877)
T KOG1059|consen 158 PYVRKKAILLLYKVFL--------KYPEALRPCFP-RLVEKLED-PDPSVVSAAVSVICELARKNP-----QNYLQLAPL 222 (877)
T ss_pred hHHHHHHHHHHHHHHH--------hhhHhHhhhHH-HHHHhccC-CCchHHHHHHHHHHHHHhhCC-----cccccccHH
Confidence 4455555444444432 22333333333 25566788 999999999999999999872 222223222
Q ss_pred HHHH-----------HHHHHHhh--cccHHHHH-----------------HHHHHHHHHHHHhHhhhccCChH---HHHH
Q psy15255 91 NLKS-----------QIILLLQT--CDNDNIRR-----------------KICDAAAEVARNLIDDAGNNLWP---EFLQ 137 (199)
Q Consensus 91 ~ik~-----------~ll~~l~~--~~~~~vr~-----------------~a~~~i~~i~~~~~~~~~~~~~~---~ll~ 137 (199)
..|- .++++|.. --.|..+. ...+|+..+...-+..++.++-. --++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 2221 13333330 11222222 22334433332211111112322 2344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 138 FLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-|--.+.|.|+..++.++-+++.|....++....|.+.| ..||.|. |+.||+.|+.
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlI----lrcL~Dk-D~SIRlrALd 358 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLI----LRCLDDK-DESIRLRALD 358 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHH----HHHhccC-CchhHHHHHH
Confidence 555566789999999999999999988777666665554 5588897 9999998863
No 58
>KOG0166|consensus
Probab=97.16 E-value=0.011 Score=51.80 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
..+..|--||--|.|..+...+. ...+.+. ..--.+.+++.+ ++..||.++.-++|.+|..- |.+-
T Consensus 122 ~~~~lq~eAAWaLTnIAsgtse~-T~~vv~a---gavp~fi~Ll~s-~~~~v~eQavWALgNIagds---------~~~R 187 (514)
T KOG0166|consen 122 DNPTLQFEAAWALTNIASGTSEQ-TKVVVDA---GAVPIFIQLLSS-PSADVREQAVWALGNIAGDS---------PDCR 187 (514)
T ss_pred CChhHHHHHHHHHHHHhcCchhh-ccccccC---CchHHHHHHhcC-CcHHHHHHHHHHHhccccCC---------hHHH
Confidence 44677777888888877654111 1111110 111227788888 99999999999998887332 2322
Q ss_pred HHHHH----HHHHHHHhhcccH-HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLK----SQIILLLQTCDND-NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~-~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
...++ ..|+.++. .+.+ ...+.+.=++..+.+.--+...-.....++|.|..++.+.|+.|..-|+-+++++..
T Consensus 188 d~vl~~g~l~pLl~~l~-~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLN-KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHhhcchHHHHHHhc-cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 22121 12556666 3333 455555666666665431100013445799999999999999999999999999987
Q ss_pred hhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 164 IFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 164 ~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-.+...-.+ ..+++.+..+++.+ ++.|+..|++
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLR 301 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALR 301 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCC-CcccccHHHh
Confidence 7665543333 36778888899997 8888876653
No 59
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.14 E-value=0.013 Score=44.01 Aligned_cols=96 Identities=18% Similarity=0.365 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh-HhhhhhhH
Q psy15255 93 KSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP-EIFGNQES 170 (199)
Q Consensus 93 k~~ll~~l~~~~-~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~-e~~~~~l~ 170 (199)
|.-|+.|+..+. ..+.-+..+++++.++..+.. ...+.|++|...+.... .+++ +.|+.+|..+. ...++-+.
T Consensus 5 kplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~-~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 5 KPLLISCLTMQETKESDFKILRRIVSHVAYEVFD-LQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred HHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHHH
Confidence 445777887332 233444456777777776643 23589999998887765 2233 56899999998 55444478
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
++++.+.+.+...+.+|++.++.
T Consensus 80 ~~~~~L~~~~~~~L~~p~~~d~~ 102 (174)
T PF04510_consen 80 PFMENLLPEISKVLLPPEEVDVE 102 (174)
T ss_pred HHHHHHHHHHHHHcCCchhccHH
Confidence 99999999999999998655553
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.13 E-value=0.03 Score=48.25 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH--------------------HH---HHH-----
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ--------------------NN---LKS----- 94 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~--------------------~~---ik~----- 94 (199)
.+.+.+++...+.+++..|..++..++.++....+.+ ...+++. .+ .|+
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4677777777777889999999999999998732211 1112211 11 121
Q ss_pred ---------HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc-------------cCChHHHHHHHHHHhcCCCHHHHH
Q psy15255 95 ---------QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-------------NNLWPEFLQFLFQCANSDNTTLKE 152 (199)
Q Consensus 95 ---------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~-------------~~~~~~ll~~l~~~~~~~~~~vr~ 152 (199)
.++.++. + +.+...+++....+.....+ .. .+.+..++|.+.+...+.+...|.
T Consensus 266 ~~~~~~~~~~L~~lL~-~--~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 266 HPLATELLDKLLELLS-S--PELGQQAAKAFGILLSDSDD-VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred CchHHHHHHHHHHHhC-C--hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence 2555554 2 55566666666555543211 11 134478899999999887777899
Q ss_pred HHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 153 SALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 153 ~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-+.+++.+...++.. +.++.+.|.+++.+++.-+ |++|+..+++
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~ 387 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLE 387 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999988 5789999999999999887 8899988763
No 61
>KOG0212|consensus
Probab=97.13 E-value=0.0021 Score=56.28 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+...+++-++.|+.|++.++|..||..+..++.........|.+.|...+....+|+ |..||-.|
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs-d~~V~~~a 145 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS-DQNVRGGA 145 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC-ccccccHH
Confidence 3677888889999999999999999999999999887778889999999999999998 88898655
No 62
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.13 E-value=0.0038 Score=47.60 Aligned_cols=137 Identities=11% Similarity=0.148 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHhhcCcCCCCChHHHHHHH------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh------hh
Q psy15255 60 IRRKICDAAAEVARNLIDDAGNNLWPEFLQNN------LKSQIILLLQTCDNDNIRRKICDAAAEVARNLID------DA 127 (199)
Q Consensus 60 vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~------ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~------~~ 127 (199)
||..+-.++..+++..-+..-.+-|+.++|.- -...|+.++-.|+++.+|..|+.++..+....-+ +.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 67788888888888854555568899998875 1224777777799999999999999888765421 00
Q ss_pred c-c------------CChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh-h-HHHHHHHHHHHHHhhCCCCCHH
Q psy15255 128 G-N------------NLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ-E-STYLVVIKQMLQQCLLPPNPYS 191 (199)
Q Consensus 128 ~-~------------~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~-l-~~~~~~l~~~l~~~l~d~~~~~ 191 (199)
. . .-.-++...|...++.+ ++.+-...++++..+++..+-+ + ......++.-+...+.+. |++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCc
Confidence 0 0 12245666777777755 7777778899998888765432 3 344555555555555665 777
Q ss_pred Hhhhhh
Q psy15255 192 VQALQL 197 (199)
Q Consensus 192 Vr~~A~ 197 (199)
|+.+++
T Consensus 161 v~v~~l 166 (182)
T PF13251_consen 161 VRVAAL 166 (182)
T ss_pred HHHHHH
Confidence 887663
No 63
>PTZ00429 beta-adaptin; Provisional
Probab=97.10 E-value=0.012 Score=54.20 Aligned_cols=91 Identities=9% Similarity=-0.089 Sum_probs=65.7
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+.+=+. ++++.+|-.|..+++.|-. ..-.+.+.+.+.+++.|++|-||.+|..++.++....++.... ..
T Consensus 110 l~KDl~-d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~ 179 (746)
T PTZ00429 110 FLQDTT-NSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QD 179 (746)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cc
Confidence 334444 7889999998888876432 1355778899999999999999999999999987765433211 12
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+..++.|+ |+.|...|+
T Consensus 180 ~~~~L~~LL~D~-dp~Vv~nAl 200 (746)
T PTZ00429 180 FKKDLVELLNDN-NPVVASNAA 200 (746)
T ss_pred hHHHHHHHhcCC-CccHHHHHH
Confidence 333445567887 999988775
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.08 E-value=0.0082 Score=49.37 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=74.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-H----
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-S---- 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~---- 170 (199)
++.+++ .+++.+|..|.+|++-++- .+ ...-.+.++.+.+.++.++..+|..|++++..+.-..+... .
T Consensus 32 I~P~v~-~~~~~vR~~al~cLGl~~L--ld---~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 32 ILPAVQ-SSDPAVRELALKCLGLCCL--LD---KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHH--hC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 446777 7888999999999986553 32 23446778888888877799999999999999987766442 2
Q ss_pred ----HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 171 ----TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 171 ----~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.....+..++...+.+. ++++|..|++
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~E 136 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSE-NPELQAIAVE 136 (298)
T ss_pred cCccchHhHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 12457888999999996 9999988874
No 65
>KOG0213|consensus
Probab=97.06 E-value=0.0076 Score=54.62 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHH----HHHHHh---hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHH
Q psy15255 84 WPEFLQNNLKSQ----IILLLQ---TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESAL 155 (199)
Q Consensus 84 WpeLl~~~ik~~----ll~~l~---~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~ 155 (199)
=.|++..+.|+. ++..+. .+.++-||+..+.+.+.+++.+ ..|+|+|+|-..+.+. ||+-|.+++
T Consensus 461 greIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal-------gip~llpfLkavc~SkkSwqaRhTgI 533 (1172)
T KOG0213|consen 461 GREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL-------GIPALLPFLKAVCGSKKSWQARHTGI 533 (1172)
T ss_pred hHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHhccccchhhhchhh
Confidence 345556666653 233332 2335668888888888777654 5799999999999887 999999999
Q ss_pred HHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 156 RLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 156 ~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
++...|+...+....+|...++.++..++.|. ...||.-
T Consensus 534 kivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~i 572 (1172)
T KOG0213|consen 534 KIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTI 572 (1172)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhH
Confidence 99999999999988899999999999999996 8888853
No 66
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.012 Score=53.90 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
...||++.--.+ +.+++=++ ++++-+|.-|..+++.+-. ..-|+.+++.+.+++.|+++.||..|.-++.+
T Consensus 83 ak~~P~~~lLav-Nti~kDl~-d~N~~iR~~AlR~ls~l~~-------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~k 153 (757)
T COG5096 83 AKLKPELALLAV-NTIQKDLQ-DPNEEIRGFALRTLSLLRV-------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAK 153 (757)
T ss_pred hccCHHHHHHHH-HHHHhhcc-CCCHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 567777632111 22445566 8999999998888765332 35789999999999999999999999999999
Q ss_pred hhHhhhhhhHHHHHH-HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 161 VPEIFGNQESTYLVV-IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 161 i~e~~~~~l~~~~~~-l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.-.+ + +.+. ....+...+.|+ ||.|-..|+
T Consensus 154 ly~ld~~-l--~~~~g~~~~l~~l~~D~-dP~Vi~nAl 187 (757)
T COG5096 154 LYRLDKD-L--YHELGLIDILKELVADS-DPIVIANAL 187 (757)
T ss_pred HHhcCHh-h--hhcccHHHHHHHHhhCC-CchHHHHHH
Confidence 8765332 2 2233 566667777887 999887775
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.03 E-value=0.016 Score=49.91 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-..++..|.+ +++.||..++...|.+ .+|+..+. |+.++. +.++.+|..+...+.. .
T Consensus 88 ~~~L~~~L~d-~~~~vr~aaa~ALg~i-----------~~~~a~~~-----L~~~L~-~~~p~vR~aal~al~~---r-- 144 (410)
T TIGR02270 88 LRSVLAVLQA-GPEGLCAGIQAALGWL-----------GGRQAEPW-----LEPLLA-ASEPPGRAIGLAALGA---H-- 144 (410)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHhcC-----------CchHHHHH-----HHHHhc-CCChHHHHHHHHHHHh---h--
Confidence 4567777777 6777888777777644 23343333 445666 7888888776544432 0
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
... -.+.+...++|+|+.||..|+++++.+...- ..+ .+...++|. |+.||..|+
T Consensus 145 ---~~~----~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~------a~~----~L~~al~d~-~~~VR~aA~ 199 (410)
T TIGR02270 145 ---RHD----PGPALEAALTHEDALVRAAALRALGELPRRL------SES----TLRLYLRDS-DPEVRFAAL 199 (410)
T ss_pred ---ccC----hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc------chH----HHHHHHcCC-CHHHHHHHH
Confidence 011 2345566677999999999999999865321 111 133457886 999998775
No 68
>KOG1060|consensus
Probab=97.00 E-value=0.035 Score=50.63 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=90.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHH--------------------------------
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQ-------------------------------- 95 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~-------------------------------- 95 (199)
|.+.|.+..+...+-++=..+|.+|+. ..-.++.|..+|+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G-------~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKG-------KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHH
Confidence 555666656666677777777777743 12455566666652
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+.+.+. ++++-+|-.|+.++..|=... --|-++-.+.+++.|+++.||..|.-|+-++-..-.+ +.+.
T Consensus 113 fQk~L~-DpN~LiRasALRvlSsIRvp~-------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e----~k~q 180 (968)
T KOG1060|consen 113 FQKALK-DPNQLIRASALRVLSSIRVPM-------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE----QKDQ 180 (968)
T ss_pred HHhhhc-CCcHHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh----hHHH
Confidence 555566 899999999999887654332 2367788889999999999999999999887654322 2347
Q ss_pred HHHHHHHhhCCCCCHHHhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A 196 (199)
+...+...|.|. ++-|.-.|
T Consensus 181 L~e~I~~LLaD~-splVvgsA 200 (968)
T KOG1060|consen 181 LEEVIKKLLADR-SPLVVGSA 200 (968)
T ss_pred HHHHHHHHhcCC-CCcchhHH
Confidence 777888888896 77766444
No 69
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.91 E-value=0.0085 Score=48.21 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
+.|+..|....+|.++.++..+.+..+..-.. ...+.++ ++ .+..++. ++++.+|.+|+.++..++...
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n---q~~Ir~~Ggi~-----lI~~lL~-~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFN---QDIIRDLGGIS-----LIGSLLN-DPNPSVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhH---HHHHHHcCCHH-----HHHHHcC-CCChHHHHHHHHHHHhcCCCh
Confidence 46888999878999999888888876543211 1222222 22 1444566 899999999999988776533
Q ss_pred HhhhccCChHHHHHHHHHHhcC-C-CHHHHHHHHHHHHhhhHhhh-hh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 124 IDDAGNNLWPEFLQFLFQCANS-D-NTTLKESALRLFTSVPEIFG-NQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~~-~-~~~vr~~a~~~l~~i~e~~~-~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.. .......++.+.+.+.+ + +..++.+|++++..+.-.-+ .. +..+ ++ .+...+..+ +..+|..+++
T Consensus 86 en---~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~---i~-~ll~LL~~G-~~~~k~~vLk 156 (254)
T PF04826_consen 86 EN---QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY---IP-DLLSLLSSG-SEKTKVQVLK 156 (254)
T ss_pred hh---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh---HH-HHHHHHHcC-ChHHHHHHHH
Confidence 21 23344556666665443 3 67889999999999852211 11 2232 33 334566665 7778777664
No 70
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.91 E-value=0.015 Score=44.36 Aligned_cols=152 Identities=12% Similarity=0.148 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhcch-h---hHhhhhccCHhh---HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhc---C--cCC
Q psy15255 13 ERQMSAVLLRKIFST-D---FIEIYSKLAVND---QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI---D--DAG 80 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~-~---~~~~~~~l~~~~---~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l---~--~~~ 80 (199)
+|+.|-.+|.-.++. + .-..|..+=|+. ...-...|+..+-..|++.+|..++++++.++...= . ++.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 688888877766544 2 245576654444 233333445554444999999999999999986640 0 001
Q ss_pred CCChHHH------HHHHH---HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHH
Q psy15255 81 NNLWPEF------LQNNL---KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTL 150 (199)
Q Consensus 81 ~~~WpeL------l~~~i---k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~v 150 (199)
...+..+ +-..+ ...|+..++.|.+..+-...++|+..+....+=.. ..+..++++..+...+.+.|+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1122222 11122 34588888888888888888888887776543111 12456777777777788899999
Q ss_pred HHHHHHHHHhhhHh
Q psy15255 151 KESALRLFTSVPEI 164 (199)
Q Consensus 151 r~~a~~~l~~i~e~ 164 (199)
|.+++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988754
No 71
>KOG1949|consensus
Probab=96.91 E-value=0.021 Score=51.50 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH---HHHHHHhhcccHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS---QIILLLQTCDNDNIRRKICDAAAE 118 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~---~ll~~l~~~~~~~vr~~a~~~i~~ 118 (199)
...+-.+..+|+. ++..||.. ++.+.-+.++-.+.+.-.|-...++.. .+..++. ++-+.||..|..-++.
T Consensus 173 rL~~p~l~R~L~a-~Ns~Vrsn----Aa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~-d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 173 RLYKPILWRGLKA-RNSEVRSN----AALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE-DPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHhHHHHHhhcc-Cchhhhhh----HHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHH
Confidence 4556678888888 99999996 555666666654444444444444432 3566677 8999999998887777
Q ss_pred HHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 119 VARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 119 i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+.+-....-.-+++.-++.-+. |+...||.+.+..+..++..= .--+....+++.+...|+|+ ++.||++++
T Consensus 247 ~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~-se~VRvA~v 323 (1005)
T KOG1949|consen 247 ITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDN-SEKVRVAFV 323 (1005)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhcc-chhHHHHHH
Confidence 76655431112334556666666554 567789999998888776431 12345566777888999997 999999876
No 72
>KOG1242|consensus
Probab=96.84 E-value=0.045 Score=48.46 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHH--HHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRR--KICDAAAEVAR 121 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~--~a~~~i~~i~~ 121 (199)
+.-.++...+| ..+.||+.+-.++=.+.+.+-. ..-+.++|.++. .+. +. ..|. .+++.++.++.
T Consensus 217 ~lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~----~aVK~llpsll~-----~l~-~~--kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 217 ILPSILTNFGD-KINKVREAAVEAAKAIMRCLSA----YAVKLLLPSLLG-----SLL-EA--KWRTKMASLELLGAMAD 283 (569)
T ss_pred hHHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCc----chhhHhhhhhHH-----HHH-HH--hhhhHHHHHHHHHHHHH
Confidence 34445555556 7788998877777666655422 333445554222 222 11 2332 34455554443
Q ss_pred HhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
.-+ .......|+++|.+.+.+.|..+.+|++|..++-.+++..+.. .+..+++.+..|++||
T Consensus 284 ~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~---dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 284 CAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP---DIQKIIPTLLDALADP 345 (569)
T ss_pred hch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHhcCc
Confidence 332 2233578999999999999999999999999999999987654 3556677777899998
No 73
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.80 E-value=0.17 Score=41.87 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC-cCCCCChHHHHH
Q psy15255 11 VEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPEFLQ 89 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~-~~~~~~WpeLl~ 89 (199)
...|..|---+.+.+..+. ....-...+..+-..++..++... ..=+.-++.+++.++-.+=. ......+.++.|
T Consensus 57 ~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~ 132 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSEEIFEELKP 132 (309)
T ss_pred HHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence 5677777766777665541 011223556778888999998843 34456677788887755421 112344455555
Q ss_pred HHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhHhhhccCChH---HHHHHHHHHh--c-C---------CCHHHHHH
Q psy15255 90 NNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWP---EFLQFLFQCA--N-S---------DNTTLKES 153 (199)
Q Consensus 90 ~~ik~~ll~~l~-~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~---~ll~~l~~~~--~-~---------~~~~vr~~ 153 (199)
. |...+. ...+..+|..++.+++.+.- +.. .+..... +.+..+|... + + +++.+..+
T Consensus 133 ~-----L~~~l~d~s~~~~~R~~~~~aLai~~f-v~~-~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 133 V-----LKRILTDSSASPKARAACLEALAICTF-VGG-SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred H-----HHHHHhCCccchHHHHHHHHHHHHHHH-hhc-CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 4 334555 22345567777777665442 221 1122233 4455444432 1 1 13678999
Q ss_pred HHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 154 ALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 154 a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|+.+-+-++..++.. +..+....++.|...+.++ |.+||.+|-+
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGE 250 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGE 250 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 999999999888764 5566677778888899997 9999998853
No 74
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=96.77 E-value=0.0095 Score=43.16 Aligned_cols=86 Identities=27% Similarity=0.347 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----h------------hH
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----Q------------ES 170 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----~------------l~ 170 (199)
-++.+.+.+++.|+....+ ..||++++-+++.+++ ++.....+++++..+.|.+.+ . +.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P----~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWP----QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCh----hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 4788889999999987754 6899999999999987 578888999999999987753 0 12
Q ss_pred HHHHHHHHHHHHhhCCCCC---HHHhhhhh
Q psy15255 171 TYLVVIKQMLQQCLLPPNP---YSVQALQL 197 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~---~~Vr~~A~ 197 (199)
...+.+..++.+++....+ +++...++
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L 107 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAAL 107 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3455666677666665311 45554443
No 75
>KOG1020|consensus
Probab=96.70 E-value=0.011 Score=57.09 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=73.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++..++ ++...+|.+|..|++.|+...+. .-.-|+....+.+-+.|.+..||++|+..+|.++-..++. ...
T Consensus 821 Il~~l~-e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~----~~q 892 (1692)
T KOG1020|consen 821 ILSVLG-ENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL----IFQ 892 (1692)
T ss_pred HHHHhc-CchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH----HHH
Confidence 666777 89999999999999999875443 3456888889999999999999999999999988765543 334
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...++.....|+ ...||.-++|
T Consensus 893 yY~~i~erIlDt-gvsVRKRvIK 914 (1692)
T KOG1020|consen 893 YYDQIIERILDT-GVSVRKRVIK 914 (1692)
T ss_pred HHHHHHhhcCCC-chhHHHHHHH
Confidence 445555666776 7888877654
No 76
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.015 Score=52.77 Aligned_cols=111 Identities=11% Similarity=0.177 Sum_probs=65.2
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhHhhhhc-----cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhc
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSK-----LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 76 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~-----l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l 76 (199)
+++.+.+.++.+|+.|++-+||.+... |.. .+++.+..+|..|.+.+.+
T Consensus 42 ~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~~i~~Dek~e~K~~lienil~---------------------- 95 (970)
T COG5656 42 HICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDDGIKADEKSEAKKYLIENILD---------------------- 95 (970)
T ss_pred HHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccCCCCCcccHHHHHHHHHHHHH----------------------
Confidence 445555678999999999999999888 544 3334444444444444443
Q ss_pred CcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 77 DDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 77 ~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
.+ ..++.+-+.+..++..+.- -++.....|+ +.|.....+.+++..+-..|+-
T Consensus 96 ----------------------v~--l~sp~~tr~~l~ail~~I~--seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLl 148 (970)
T COG5656 96 ----------------------VF--LYSPEVTRTALNAILVNIF--SEDKPSDLWG-LFPKAANLLRSSEANHVYTGLL 148 (970)
T ss_pred ----------------------HH--hcCCchHHHHHHHHHHHhc--cccCchhhcc-cchHHHHhhcccchhHHHHHHH
Confidence 00 1111222222222222111 1122346777 8888888888888888888888
Q ss_pred HHHhhhHhh
Q psy15255 157 LFTSVPEIF 165 (199)
Q Consensus 157 ~l~~i~e~~ 165 (199)
++..++...
T Consensus 149 cl~elfkay 157 (970)
T COG5656 149 CLEELFKAY 157 (970)
T ss_pred HHHHHHHHH
Confidence 888877543
No 77
>KOG4653|consensus
Probab=96.60 E-value=0.078 Score=48.87 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
+.+++|..+-.+||..+.+. .+-+-.....+-...+..|++++ +-|=-.+-+.+.-|... ++ .+.-|.+.
T Consensus 739 ~qvpik~~gL~~l~~l~e~r-----~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev-y~---e~il~dL~ 808 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKR-----KKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV-YP---EDILPDLS 808 (982)
T ss_pred CcccchHHHHHHHHHHHHhc-----chhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh-cc---hhhHHHHH
Confidence 44678988888999988653 22334455678888999999944 43333333333333221 12 34444443
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
..|-. ....+.+..|.+.++++..++....+ ...++..-|+..+..++.+|+...|-++|..++.+|....-.
T Consensus 809 e~Y~s------~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 809 EEYLS------EKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHh------cccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 32110 00012245677888999998877654 223677789999999999999999999999999999887654
Q ss_pred hHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 169 ESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 169 l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...+ .+.+..++.-...|+ ++-||-+|+
T Consensus 882 vsd~~~ev~~~Il~l~~~d~-s~~vRRaAv 910 (982)
T KOG4653|consen 882 VSDFFHEVLQLILSLETTDG-SVLVRRAAV 910 (982)
T ss_pred hhHHHHHHHHHHHHHHccCC-chhhHHHHH
Confidence 4333 344444444445566 888998886
No 78
>KOG2160|consensus
Probab=96.53 E-value=0.062 Score=44.74 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=75.5
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD- 126 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~- 126 (199)
++..+.+ ++..+|..+++++|..+.|.-+. -..++..-..+.|+..+..+++..+|.+|+..++.+++...+.
T Consensus 129 ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~-----Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 129 LLGYLEN-SDAELRELAARVIGTAVQNNPKS-----QEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred HHHHhcC-CcHHHHHHHHHHHHHHHhcCHHH-----HHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 4456777 99999999999999999887331 1111111123347778887788889999999999888876541
Q ss_pred --hc-cCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhhHhhhh
Q psy15255 127 --AG-NNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 127 --~~-~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
+. .+.| .+|...+++ .+...+.-++..+..+.+....
T Consensus 203 ~~fl~~~G~----~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 203 DEFLKLNGY----QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHhcCCH----HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 11 1233 455666666 4777888899999998865443
No 79
>KOG1020|consensus
Probab=96.44 E-value=0.12 Score=50.26 Aligned_cols=137 Identities=11% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH-HHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ-NNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~-~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
..+-..++..|+ |+...+|+++-.+++.++..- |.++. --++..+-.=+ ++++.+||..|++.++...
T Consensus 815 D~yLk~Il~~l~-e~~ialRtkAlKclS~ive~D---------p~vL~~~dvq~~Vh~R~-~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 815 DPYLKLILSVLG-ENAIALRTKALKCLSMIVEAD---------PSVLSRPDVQEAVHGRL-NDSSASVREAALDLVGRFV 883 (1692)
T ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcC---------hHhhcCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhh
Confidence 344556777888 599999999999999997432 33310 00011111112 3889999999999998766
Q ss_pred HHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.... ...+++...+...+.|+...||..+++++..+|+..++ +....+....|+. -..|. +..|+..++
T Consensus 884 l~~~-----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakmlr-Rv~DE-Eg~I~kLv~ 952 (1692)
T KOG1020|consen 884 LSIP-----ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKMLR-RVNDE-EGNIKKLVR 952 (1692)
T ss_pred hccH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHH-Hhccc-hhHHHHHHH
Confidence 5443 36778888888888999999999999999999998754 3333334444444 44564 555766555
No 80
>KOG1062|consensus
Probab=96.41 E-value=0.026 Score=51.39 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=81.0
Q ss_pred hhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHH
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKI 112 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a 112 (199)
+..++..-.+.=--.+|..|+. .++...-..+++.+.++++-=.. .|.=..++-..|+ -.+.-.++...|-.|
T Consensus 242 v~gi~dPFLQi~iLrlLriLGq-~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~----TI~~I~~~~~Lrvla 314 (866)
T KOG1062|consen 242 VHGISDPFLQIRILRLLRILGQ-NDADASDLMNDILAQVATNTDSS--KNAGNAILYECVR----TIMDIRSNSGLRVLA 314 (866)
T ss_pred ccCCCchHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHH----HHHhccCCchHHHHH
Confidence 3345443333222347888998 89999999999999999886322 1111122111111 122235667778888
Q ss_pred HHHHHHHHHHhHhhhcc-CChHH--------------HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 113 CDAAAEVARNLIDDAGN-NLWPE--------------FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~-~~~~~--------------ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.++++.+...- +.... -..+. =-.++..|++|+|..+|.-|++....+... .++......++
T Consensus 315 iniLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl 391 (866)
T KOG1062|consen 315 INILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELL 391 (866)
T ss_pred HHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 77777655321 10000 01122 234678899999999999999988777654 23444455555
Q ss_pred HHHHHh
Q psy15255 178 QMLQQC 183 (199)
Q Consensus 178 ~~l~~~ 183 (199)
.++-.+
T Consensus 392 ~fL~~~ 397 (866)
T KOG1062|consen 392 EFLESS 397 (866)
T ss_pred HHHHhc
Confidence 555544
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.38 E-value=0.041 Score=41.91 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=67.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh---hHhhhhhhHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV---PEIFGNQESTY 172 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i---~e~~~~~l~~~ 172 (199)
++.++. |.....|..|.+.+.+++..-..+......|.|++-+-+++++.++.+...++.++..+ .+.+++.+.||
T Consensus 43 f~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 43 FFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 556777 77777777777777777765221122356789999999999999999999999999999 77888889999
Q ss_pred HHHHHHHHH
Q psy15255 173 LVVIKQMLQ 181 (199)
Q Consensus 173 ~~~l~~~l~ 181 (199)
...|.+.+.
T Consensus 122 yrqLLp~ln 130 (183)
T PF10274_consen 122 YRQLLPVLN 130 (183)
T ss_pred HHHHHHHHH
Confidence 999988887
No 82
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.14 Score=46.99 Aligned_cols=114 Identities=20% Similarity=0.171 Sum_probs=83.1
Q ss_pred hhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH
Q psy15255 32 IYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 32 ~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~ 111 (199)
.|.+..|+.---.-+.+.+=+++ +++.+|..+-++.+.+ +....|+.+.+. +.+++. ++++-||+.
T Consensus 81 ~yak~~P~~~lLavNti~kDl~d-~N~~iR~~AlR~ls~l-------~~~el~~~~~~~-----ik~~l~-d~~ayVRk~ 146 (757)
T COG5096 81 RYAKLKPELALLAVNTIQKDLQD-PNEEIRGFALRTLSLL-------RVKELLGNIIDP-----IKKLLT-DPHAYVRKT 146 (757)
T ss_pred HHhccCHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHhc-------ChHHHHHHHHHH-----HHHHcc-CCcHHHHHH
Confidence 35666666555666778888888 9999999877777655 224556666554 556777 999999999
Q ss_pred HHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 112 ICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 112 a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|.-++..+.+...+ ..++ +.-.+..++.|+||.+...|+.++..+.+.
T Consensus 147 Aalav~kly~ld~~-----l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 147 AALAVAKLYRLDKD-----LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhcCHh-----hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999887754322 2222 455566677899999999999999988766
No 83
>KOG2032|consensus
Probab=96.33 E-value=0.11 Score=45.06 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....++..+.+-..||+..+|..|++.++..++..+++...|...++..+..++-|+.+.+|..+|++
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~ 322 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMK 322 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344566667777777899999999999999999998888888877777776667677668899998864
No 84
>KOG2032|consensus
Probab=96.33 E-value=0.034 Score=48.16 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=72.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHH
Q psy15255 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQM 179 (199)
Q Consensus 102 ~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~ 179 (199)
.+++..+|+.++.+++..+...++ .-..+-+.++..+...+-|+ +..|...|+.++..+.+..... +.+|.-.+.--
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~-kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPD-KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcH-HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 577888999999999998876443 33467788888888888765 7889999999999999887644 66666566556
Q ss_pred HHHhhCCCCCHHHhhhhh
Q psy15255 180 LQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 180 l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+.|. ++++|.+|+
T Consensus 347 lR~l~~se-~~~~R~aa~ 363 (533)
T KOG2032|consen 347 LRTLFDSE-DDKMRAAAF 363 (533)
T ss_pred HHHHHHhc-ChhhhhhHH
Confidence 66676774 999999885
No 85
>KOG2956|consensus
Probab=96.31 E-value=0.3 Score=42.26 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHh--hcccHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQ--TCDNDNIRRKICDAA 116 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~--~~~~~~vr~~a~~~i 116 (199)
+..+.|...+++.|++..+...|.-+-.++.+++++--.. -....|+ .+.+.++ .++++.+-..|.+..
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~-------ai~K~Leaa~ds~~~v~~~Aeed~ 395 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEI-------AICKVLEAAKDSQDEVMRVAEEDC 395 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHH-------HHHHHHHHHhCCchhHHHHHHHHH
Confidence 3456677788999999666666766667777776553110 1111222 1223443 255666666666665
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
..++....+ ....-.+-|.+ ...|...-.++++.+..+++.+..+ +.+..+.|.+.+.++.++. +..||..
T Consensus 396 ~~~las~~P---~~~I~~i~~~I----lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKt 467 (516)
T KOG2956|consen 396 LTTLASHLP---LQCIVNISPLI----LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKT 467 (516)
T ss_pred HHHHHhhCc---hhHHHHHhhHH----hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhh
Confidence 555443322 12333344443 3355566678888999999998866 6778888988899999997 8899998
Q ss_pred hh
Q psy15255 196 QL 197 (199)
Q Consensus 196 A~ 197 (199)
|+
T Consensus 468 aV 469 (516)
T KOG2956|consen 468 AV 469 (516)
T ss_pred HH
Confidence 75
No 86
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.23 E-value=0.02 Score=50.98 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
+.++-||+..+.+++.+++.+ ..++++|++-..+.+. +|+-|.++.++...|++.++....+|...++..+.
T Consensus 292 ~~deYVRnvt~ra~~vva~al-------gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADAL-------GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhh-------CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 345678888777777777654 5689999999988876 99999999999999999999888899999999999
Q ss_pred HhhCCCCCHHHhhhh
Q psy15255 182 QCLLPPNPYSVQALQ 196 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~A 196 (199)
.++.|. +.-||..+
T Consensus 365 ~~l~D~-~~~vRi~t 378 (975)
T COG5181 365 KLLKDR-SRFVRIDT 378 (975)
T ss_pred HHhhcc-ceeeeehh
Confidence 999996 77787543
No 87
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.11 E-value=0.043 Score=38.86 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=48.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
|+.++..+.++.+-.-||.-|++++...+. |...+. .....+++++.++|+.||..|+.++..++-
T Consensus 48 L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 48 LIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 566775455667777789999999988754 333333 367788999999999999999999998764
No 88
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.06 E-value=0.17 Score=45.13 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.++++..+| -++.++. .++..||.+.+++++.+....-+. .....+.|+..+..-+-|..+.||..|+.+++++-+.
T Consensus 86 ~~~V~~~~~-h~lRg~e-skdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 86 EELVAGTFY-HLLRGTE-SKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHHHHHHH-HHHhccc-CcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 445443332 1444555 788999999999998877655321 1234566777888888888999999999999998765
Q ss_pred hhhhhHHHHHHHHHHHHHhhC-CCCCHHHhhhhh
Q psy15255 165 FGNQESTYLVVIKQMLQQCLL-PPNPYSVQALQL 197 (199)
Q Consensus 165 ~~~~l~~~~~~l~~~l~~~l~-d~~~~~Vr~~A~ 197 (199)
-.+. -+.+...+...+| || +.+||..|+
T Consensus 163 ~~ne----en~~~n~l~~~vqnDP-S~EVRr~al 191 (885)
T COG5218 163 ELNE----ENRIVNLLKDIVQNDP-SDEVRRLAL 191 (885)
T ss_pred cCCh----HHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 4332 1333334444444 66 889998875
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.05 E-value=0.63 Score=38.58 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+...+.+...+.+++..+|..|..+++.+.... ..+...+...+.|+ +..||..++
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~~vr~~~~ 234 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SLEVRKAAL 234 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CHHHHHHHH
Confidence 445556666666666677777777776655442 23445556666776 777776654
No 90
>KOG0915|consensus
Probab=96.04 E-value=0.26 Score=48.22 Aligned_cols=156 Identities=14% Similarity=0.198 Sum_probs=103.8
Q ss_pred HhhhhccCHhhH-------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHh-
Q psy15255 30 IEIYSKLAVNDQ-------NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQ- 101 (199)
Q Consensus 30 ~~~~~~l~~~~~-------~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~- 101 (199)
..+|+.+-++.+ +.|-..||-.+.+ ..=.||...|-+.+.|++.-=-......-||+.-+ ++....
T Consensus 1019 ~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~-----~fRvmDD 1092 (1702)
T KOG0915|consen 1019 TSIWNALITDSKKVVDEYLNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEA-----AFRVMDD 1092 (1702)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----HHHHHHH
Confidence 789998877654 3455566666666 67789999999999998653110112333444433 222332
Q ss_pred -hcccHHHHHHHHHHHHHHHHHhHhhh----ccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 102 -TCDNDNIRRKICDAAAEVARNLIDDA----GNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 102 -~~~~~~vr~~a~~~i~~i~~~~~~~~----~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
-|....+.++++.+++.+.....+.. +....+.++|++.. ++-+.-+.+|..++..+..+....+..+.||.+.
T Consensus 1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 13333344567777877776665521 22445778888764 3336678899999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHH
Q psy15255 176 IKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~V 192 (199)
+++.+.+....- ++.|
T Consensus 1173 LIp~ll~~~s~l-E~~v 1188 (1702)
T KOG0915|consen 1173 LIPLLLNAYSEL-EPQV 1188 (1702)
T ss_pred HHHHHHHHcccc-chHH
Confidence 999998887764 5554
No 91
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.96 E-value=0.43 Score=39.99 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCC-------CCChHHHHHHHHHH----------------------------------H
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAG-------NNLWPEFLQNNLKS----------------------------------Q 95 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~-------~~~WpeLl~~~ik~----------------------------------~ 95 (199)
+-..|+.++++.+.+.+.-..... ...||+++..+++. .
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ 168 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWK 168 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGG
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHH
Confidence 556788888888888888766532 36778888877742 1
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHh---HhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNL---IDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~ 170 (199)
++..++ .++-.+..-|..++-++...- ...+...+++.++..+.+++++++--.|..+++.++.+....... +.
T Consensus 169 ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 169 FFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp HHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 333344 455666555555554433211 112334688999999999999999999999999999998664432 34
Q ss_pred HHHH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 171 TYLV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 171 ~~~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|++ .-+.++...+.|+ +..||.+|+
T Consensus 248 ~yi~~~~nLkl~M~lL~d~-sk~Iq~eAF 275 (335)
T PF08569_consen 248 RYISSPENLKLMMNLLRDK-SKNIQFEAF 275 (335)
T ss_dssp HHTT-HHHHHHHHHHTT-S--HHHHHHHH
T ss_pred HHHCCHHHHHHHHHHhcCc-chhhhHHHH
Confidence 4443 3355666788997 899999986
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.96 E-value=0.54 Score=47.98 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=87.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+ .++.++..++.++..+++.- . ++..+. ++.++. .+++.++..+.+++..|.......
T Consensus 534 pLV~LL~s-gd~~~q~~Aa~AL~nLi~~~----d----~~~I~~-----Lv~LLl-sdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 534 ALLWLLKN-GGPKGQEIAAKTLTKLVRTA----D----AATISQ-----LTALLL-GDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHhcc----c----hhHHHH-----HHHHhc-CCChhHHHHHHHHHHHHHhhcchh
Confidence 57888888 78889998888888886532 1 112222 445666 566777777788777765422111
Q ss_pred hcc---CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 127 AGN---NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 127 ~~~---~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
... ..-+.-++.|.+++++++..+++.|+.++..++....+.... .....++.+...+.++ +.+++.+|+
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA 672 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSA 672 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHH
Confidence 000 012356888999999999999999999999999765443221 1123344455566776 778887764
No 93
>KOG0212|consensus
Probab=95.91 E-value=0.14 Score=45.30 Aligned_cols=165 Identities=12% Similarity=0.139 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhcchhhHhhhhccC-HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC-----CCCChH
Q psy15255 12 EERQMSAVLLRKIFSTDFIEIYSKLA-VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-----GNNLWP 85 (199)
Q Consensus 12 ~~R~~a~vlLr~~~~~~~~~~~~~l~-~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~-----~~~~Wp 85 (199)
+-|-.|+.-+-+.++. +..-. -+.-..+-+.+..-....++...|+ |-.+|..|-..--.. -.+.||
T Consensus 15 ekRKaaalelEk~Vk~-----l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~~~~~Y~~~iv~ 87 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKD-----LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGIKDAGYLEKIVP 87 (675)
T ss_pred HHHHHHHHHHHHHHHH-----HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhccccHHHHHHhhH
Confidence 4566666666666542 11111 1111223333333333345555555 555555554331111 023344
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
. ++.++. +++..+|..||+.+..|+... ......+.++++..+.+...|++..||.+|= .+..+....
T Consensus 88 P---------v~~cf~-D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdI 155 (675)
T KOG0212|consen 88 P---------VLNCFS-DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDI 155 (675)
T ss_pred H---------HHHhcc-CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHh
Confidence 4 445777 888999999999999988744 2223478899999999999999999986653 334433322
Q ss_pred -hhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 166 -GNQE-STYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 166 -~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+.- .=+++.+++.+...+-+- ++.+|..-
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~-n~~tR~fl 187 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVI-NPMTRQFL 187 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcC-CchHHHHH
Confidence 2211 114677788887777775 67777543
No 94
>KOG1243|consensus
Probab=95.69 E-value=0.42 Score=43.27 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=93.5
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH---------------HHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS---------------QIILLL 100 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~---------------~ll~~l 100 (199)
-+.+.|..+.+.|..-+...++..+++++. ..++..+-- +. .=++.+.-++|- -|+++|
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvl---p~Ll~~~~~--g~-a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF 339 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVL---PILLAALEF--GD-AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLF 339 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHhhc--cc-cchhhhhHHHHhhhhccccccccchhhhHHHHh
Confidence 357788888888888887777777776532 222222210 01 112222222221 277788
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH
Q psy15255 101 QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180 (199)
Q Consensus 101 ~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l 180 (199)
. .++..+|...++=+-..+..+.+ ...-+.++|.+..++.|.|+.+|+.++..+..+++.+... ..-..++.+|
T Consensus 340 ~-~~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ 413 (690)
T KOG1243|consen 340 K-SPDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYL 413 (690)
T ss_pred c-CcchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHH
Confidence 8 88889998766655555544432 1234679999999999999999999999999999988765 2235666666
Q ss_pred HHhhCCCCCHHHhh
Q psy15255 181 QQCLLPPNPYSVQA 194 (199)
Q Consensus 181 ~~~l~d~~~~~Vr~ 194 (199)
...-.|. ++.+|.
T Consensus 414 ar~q~d~-~~~irt 426 (690)
T KOG1243|consen 414 ARLQPDE-HGGIRT 426 (690)
T ss_pred HhhCccc-cCcccc
Confidence 6554443 655553
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.66 E-value=0.16 Score=43.69 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++..+. ++++.||..+.+.++. -..+...+.|..++.++++.+|.+++.+++..-.. +
T Consensus 91 L~~~L~-d~~~~vr~aaa~ALg~-----------i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------~---- 148 (410)
T TIGR02270 91 VLAVLQ-AGPEGLCAGIQAALGW-----------LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------P---- 148 (410)
T ss_pred HHHHhc-CCCHHHHHHHHHHHhc-----------CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------h----
Confidence 445666 7778888876666542 24567788888889999999999999877762211 1
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+...++|+ |+.||.+|++
T Consensus 149 -~~~L~~~L~d~-d~~Vra~A~r 169 (410)
T TIGR02270 149 -GPALEAALTHE-DALVRAAALR 169 (410)
T ss_pred -HHHHHHHhcCC-CHHHHHHHHH
Confidence 12455567787 9999998874
No 96
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.62 E-value=0.038 Score=29.23 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
-..+++++.| +++.||..++..++.+++.
T Consensus 2 lp~l~~~l~D-~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLND-PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 3468899999 9999999999999999864
No 97
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.57 E-value=0.15 Score=51.82 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-----HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-----LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-----l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
..|.+.|.+ +++.+++.++.+++.+....- .....+ ++- ++.++. ..+..++..++.++..++
T Consensus 612 ~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~-----d~~~avv~agaIpP-----LV~LLs-s~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 612 RTLIQLLSS-SKEETQEKAASVLADIFSSRQ-----DLCESLATDEIINP-----CIKLLT-NNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCh-----HHHHHHHHcCCHHH-----HHHHHh-cCChHHHHHHHHHHHHHH
Confidence 456677777 788999999999988875331 111111 121 556777 777888999999988888
Q ss_pred HHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 121 RNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 121 ~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...-+..-.... ...+|.|.+++.++|..+++.|+.++..++..-+....-.....++.+...++++ ++++|..|+
T Consensus 680 ~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa 756 (2102)
T PLN03200 680 RSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAA 756 (2102)
T ss_pred hCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHH
Confidence 522110000111 2367778999999999999999999999997654321111234456677788887 788887664
No 98
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.54 E-value=0.65 Score=34.62 Aligned_cols=120 Identities=12% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhc---C---c--------CC------------CC--ChHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI---D---D--------AG------------NN--LWPEFLQNNLKS 94 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l---~---~--------~~------------~~--~WpeLl~~~ik~ 94 (199)
.+-..|++.|+.|.+..+|+.+-.++|.|....- + . .. .. .-.|.-++.+-+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~ 89 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVIN 89 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHH
Confidence 3566789999999889999999999999875431 0 0 00 00 112344555556
Q ss_pred HHHHHHhhcccHH-HHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 95 QIILLLQTCDNDN-IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 95 ~ll~~l~~~~~~~-vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.|+..++ +++-+ -...+.+++..|+....... ..+.|.++|.++..+++.+...|+.-+.-++.+...
T Consensus 90 ~L~~iL~-D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 90 ALMRILR-DPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHH-hhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 7888888 55533 34456777777776543222 478899999999999987778999888888777654
No 99
>KOG1820|consensus
Probab=95.45 E-value=0.89 Score=42.51 Aligned_cols=125 Identities=13% Similarity=0.166 Sum_probs=86.1
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH---HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS---QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 132 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~---~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~ 132 (199)
.+..|--.+++.+..|++.+=. ....+.+. .++..+. +.-+.+|..+..++-.++. ....
T Consensus 307 aN~~v~~~aa~~l~~ia~~lr~---------~~~~~~~~v~p~lld~lk-ekk~~l~d~l~~~~d~~~n-------s~~l 369 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKLRP---------LFRKYAKNVFPSLLDRLK-EKKSELRDALLKALDAILN-------STPL 369 (815)
T ss_pred cchhHHHHHHHHHHHHHHhcch---------hhHHHHHhhcchHHHHhh-hccHHHHHHHHHHHHHHHh-------cccH
Confidence 6667777777888888766511 12222222 1444454 5556666555555444433 3567
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-h-HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-E-STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+.+.+..++.+.+|++|......+...+...+.. . ..-...+.+.+.....|. +.+||.+|.+
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e 436 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT-DKDVRKAALE 436 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHH
Confidence 788999999999999999999999999998887743 2 344567777888888897 9999998864
No 100
>KOG1077|consensus
Probab=95.45 E-value=0.68 Score=42.25 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC---------
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA--------- 79 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~--------- 79 (199)
.|..+|+.|.-|| |.-.+.++-..|...+|+-|.+ -+..+|..+.--+|+|+...-...
T Consensus 381 rDvSirrravDLL-----------Y~mcD~~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtDy~WyVdviLq 448 (938)
T KOG1077|consen 381 RDVSIRRRAVDLL-----------YAMCDVSNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATDYSWYVDVILQ 448 (938)
T ss_pred cchHHHHHHHHHH-----------HHHhchhhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 5666777766665 5556666777899999999999 899999999999999998764321
Q ss_pred ---------CCCChHHHHHHHHHH---------HHHHHHhhcc-cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHH
Q psy15255 80 ---------GNNLWPEFLQNNLKS---------QIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLF 140 (199)
Q Consensus 80 ---------~~~~WpeLl~~~ik~---------~ll~~l~~~~-~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~ 140 (199)
..+.|-.+.+..+.+ .++..++... +...-+.++.++++...-+.+ ...-.-..++..+.
T Consensus 449 Liriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~-~prss~~~qFsllh 527 (938)
T KOG1077|consen 449 LIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD-DPRSSPAVQFSLLH 527 (938)
T ss_pred HHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC-CCCCChHHHHHHHH
Confidence 246666665543322 2444444111 112222233344443322211 11122345666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 141 QCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 141 ~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.-....++..|-.-+....+++...++ -.+.+..+|.....-. |++++.-|+|+
T Consensus 528 ~K~~~~s~~tr~lLLtTyiKl~nl~PE----i~~~v~~vFq~~~n~~-D~ElQqRa~EY 581 (938)
T KOG1077|consen 528 EKLHLCSPVTRALLLTTYIKLINLFPE----IKSNVQKVFQLYSNLI-DVELQQRAVEY 581 (938)
T ss_pred HHhccCChhHHHHHHHHHHHHHhhChh----hhHHHHHHHHhhcccC-CHHHHHHHHHH
Confidence 666666777776666666666655432 2345666666665555 88898888764
No 101
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=95.44 E-value=0.13 Score=34.17 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
..+...++..+|....+|+..++..-.+ .....|+.++..+-....+++..+-..|++++..
T Consensus 24 ~i~~~~~~~~vre~il~ci~qil~~~~~-~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 24 YIMSNNPSIDVRELILECILQILQSRGE-NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHhHH-HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 3445567889999999999998876543 3457899999999999998888888888887654
No 102
>KOG2025|consensus
Probab=95.44 E-value=0.054 Score=48.97 Aligned_cols=95 Identities=9% Similarity=0.184 Sum_probs=64.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++.+.. .++..||.+.|.+++.+...... -.....+.|...+..-+.|..|.||.-|+.+++.+=+.-.++--+
T Consensus 90 lLRg~E-skdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~---- 163 (892)
T KOG2025|consen 90 LLRGTE-SKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP---- 163 (892)
T ss_pred HHhccc-CcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc----
Confidence 444555 67889999999999887763221 012356777888888888999999999999999977532221112
Q ss_pred HHHHHHHhhC-CCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLL-PPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~-d~~~~~Vr~~A~ 197 (199)
+...+...++ || +++||.+|+
T Consensus 164 v~n~l~~liqnDp-S~EVRRaaL 185 (892)
T KOG2025|consen 164 VVNLLKDLIQNDP-SDEVRRAAL 185 (892)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHH
Confidence 2223333333 66 999998875
No 103
>KOG0567|consensus
Probab=95.41 E-value=0.2 Score=40.26 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=61.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.+...+.+ +++..|+.+|.+.|.+-. |.-+|.++| -+.....++-|||-+++.++.|+.
T Consensus 191 al~~~l~~-~SalfrhEvAfVfGQl~s-----------~~ai~~L~k----~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 191 ALIDGLAD-DSALFRHEVAFVFGQLQS-----------PAAIPSLIK----VLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred HHHHhccc-chHHHHHHHHHHHhhccc-----------hhhhHHHHH----HHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 46777888 588899988888876632 222333222 123346778999999999887774
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
++-+++|.+.+.|+++-||+++--+|..
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567888888999998899887776654
No 104
>KOG2160|consensus
Probab=95.37 E-value=0.9 Score=38.01 Aligned_cols=146 Identities=18% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+..+|-.|+-.+...+.+++..+ ..+-+ ....+.|+..|.++++-.+|+++=.+++-++|+..+. -.+++
T Consensus 136 ~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E---~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-----~~~fl 206 (342)
T KOG2160|consen 136 SDAELRELAARVIGTAVQNNPKSQ-EQVIE---LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-----QDEFL 206 (342)
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHH-HHHHH---cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-----HHHHH
Confidence 578999999999998887653111 00101 1267789999999888899999999999999998542 11222
Q ss_pred HHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhHhh
Q psy15255 89 QNNLKSQIILLLQTC--DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA-NSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~--~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
+..--+.|..+++ + .+...+.++...+..+......+. ...-+..++....-. ...+..+++.+++++......+
T Consensus 207 ~~~G~~~L~~vl~-~~~~~~~lkrK~~~Ll~~Ll~~~~s~~-d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQ-SNNTSVKLKRKALFLLSLLLQEDKSDE-DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hcCCHHHHHHHHH-cCCcchHHHHHHHHHHHHHHHhhhhhh-hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 2111223455676 5 445566677777777765544321 112233333333333 3457888988888887776543
No 105
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.16 E-value=0.12 Score=41.60 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=65.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--EST 171 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~ 171 (199)
|+.+++...+|.++..+.-+++..+..-.. ...+- .-++.+..++.++++.+|+.|+.++..+....+.. ++.
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~n---q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFN---QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhH---HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 667888777889998888888776543322 12222 25778888899999999999999999987765543 345
Q ss_pred HHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 172 YLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 172 ~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|.+.+...+.. ++-|.+++.++++
T Consensus 94 ~i~~Vc~~~~s---~~lns~~Q~agLr 117 (254)
T PF04826_consen 94 YIPQVCEETVS---SPLNSEVQLAGLR 117 (254)
T ss_pred HHHHHHHHHhc---CCCCCHHHHHHHH
Confidence 55555544433 3225567766653
No 106
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.11 E-value=1.4 Score=36.46 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=92.2
Q ss_pred HhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH--HHHHHH--h---------hc
Q psy15255 38 VNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS--QIILLL--Q---------TC 103 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~--~ll~~l--~---------~~ 103 (199)
++.-..++..|...+.+.. ...+|..++.+.|.+.-.-- ..++-+..+++. .++... . ..
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~------~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGG------SDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 4445577777888888743 45678888888888765421 122222211110 011111 1 12
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh----hHHHHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ----ESTYLVVIKQM 179 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~----l~~~~~~l~~~ 179 (199)
+++.+...|+..-+-++..+.+......|...+|.|..++++++..||.+|-++++-+.|...+. ..+..+.+...
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~ 277 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQ 277 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHH
Confidence 23557777777777777655442234678889999999999999999999999999999877642 23456777777
Q ss_pred HHHhhCCC
Q psy15255 180 LQQCLLPP 187 (199)
Q Consensus 180 l~~~l~d~ 187 (199)
+.....++
T Consensus 278 l~~La~dS 285 (309)
T PF05004_consen 278 LRELATDS 285 (309)
T ss_pred HHHHHHhc
Confidence 77776654
No 107
>KOG2933|consensus
Probab=95.08 E-value=0.74 Score=37.96 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=72.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.+.+.+++ +...|.+++|.+++.++..+ ++.--+-+..++++-+.+.- .++.=||.-|-..+..+..+..
T Consensus 133 ~vvkslKN-lRS~VsraA~~t~~difs~l-----n~~i~~~ld~lv~~Ll~ka~--~dnrFvreda~kAL~aMV~~vt-- 202 (334)
T KOG2933|consen 133 AVVKSLKN-LRSAVSRAACMTLADIFSSL-----NNSIDQELDDLVTQLLHKAS--QDNRFVREDAEKALVAMVNHVT-- 202 (334)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHhccC--
Confidence 34455555 77889999999999999776 22222223332222122111 2333455555555554443221
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHHHHHHHHHHHHhhCC
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~~~~l~~~l~~~l~d 186 (199)
-.-+++.|.-+.++.++.+|..++.++..+...++-. ..+++..+.+.+.+-+.|
T Consensus 203 -----p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d 259 (334)
T KOG2933|consen 203 -----PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSD 259 (334)
T ss_pred -----hHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcc
Confidence 1347888888889999999999999999988766411 234444444444444343
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.08 E-value=0.25 Score=33.36 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=54.1
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.-++ ++.+.+|-.+...+..++..-- .....++.++..+.+.++|+|+-|=..|+++++.+++..++.
T Consensus 10 ~~L~-dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 10 SDLN-DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHcc-CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3444 7888899988888877765321 123678999999999999999999999999999999887553
No 109
>KOG0392|consensus
Probab=95.02 E-value=0.51 Score=45.55 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH----HHHHHHh----hcccHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS----QIILLLQ----TCDNDNIRRKIC 113 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~----~ll~~l~----~~~~~~vr~~a~ 113 (199)
..+-.+|.+-+-+ +.-.+||-.+...-++++..-+..+. +++..++-+ -.+.-+. .+-...||...+
T Consensus 76 ~s~~e~L~~~~~~-~~we~rhg~~i~lrei~~~h~~~~~~----~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 76 LSFLEELVNDLFE-PQWEIRHGAAIALREILKTHGDSLSY----ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred HHHHHHHHHHhcC-chhhhhcCcchhhhhHHHHhcchhhH----HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4667778888887 88999999888888888877654332 333322211 1111111 122346888888
Q ss_pred HHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 114 ~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
.++..+..+..+ ....+.+.++.+++..+.|.+|.+++..+-+......+.+....+.+...+..+++|+ +.+||
T Consensus 151 q~L~~~l~~~~~----s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~ 225 (1549)
T KOG0392|consen 151 QALGAYLKHMDE----SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVR 225 (1549)
T ss_pred HHHHHHHHhhhh----HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHH
Confidence 888887776543 4566777788888888899999999999888877554556677788889999999998 99999
Q ss_pred hhhhcC
Q psy15255 194 ALQLKF 199 (199)
Q Consensus 194 ~~A~~f 199 (199)
..|..|
T Consensus 226 ~~aa~~ 231 (1549)
T KOG0392|consen 226 SVAAQF 231 (1549)
T ss_pred HHHHHH
Confidence 887654
No 110
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.94 E-value=0.32 Score=36.31 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc--------------------------------cC
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG--------------------------------NN 130 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~--------------------------------~~ 130 (199)
.+|+|++. |+.++..+.+.++|..+..+++.|..-.+-.+. ..
T Consensus 7 ~yP~LL~~-----L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 7 DYPELLDI-----LLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred HhHHHHHH-----HHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHH
Confidence 57889887 667888788899999999999887653321000 01
Q ss_pred ChH-HHHHHHHHHhcCCCH-HHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 131 LWP-EFLQFLFQCANSDNT-TLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 131 ~~~-~ll~~l~~~~~~~~~-~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
..| -.+..+.+.++|++- ....+++.++..++...+.+-.+|.+.+++.+...++.. +...|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-~~~~~ 145 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-PDSLR 145 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-CHHHH
Confidence 111 134556677777643 345688888888887776666788998888888888765 44433
No 111
>KOG2062|consensus
Probab=94.75 E-value=0.27 Score=44.93 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
.||+.|--+..| .+..||+.+-..+|-++-. =|+.++. .+.++..+-++.||..++-+++-.+.
T Consensus 555 air~lLh~aVsD-~nDDVrRaAVialGFVl~~---------dp~~~~s-----~V~lLses~N~HVRyGaA~ALGIaCA- 618 (929)
T KOG2062|consen 555 AIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR---------DPEQLPS-----TVSLLSESYNPHVRYGAAMALGIACA- 618 (929)
T ss_pred hHHHhhcccccc-cchHHHHHHHHHheeeEec---------ChhhchH-----HHHHHhhhcChhhhhhHHHHHhhhhc-
Confidence 455555555666 8889999766666655422 2444443 44577656789999886555543221
Q ss_pred hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
.....+-+..|--++.|+..-||.+||-+++.|+--..+++.|..+.+-..+...+.|.
T Consensus 619 ------GtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 619 ------GTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred ------CCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 12334556666667778888899999999999987766666555566666665565554
No 112
>KOG1240|consensus
Probab=94.75 E-value=0.32 Score=46.59 Aligned_cols=145 Identities=15% Similarity=0.131 Sum_probs=93.2
Q ss_pred HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 38 VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
.+-...+.+....+|.+ +.+.||+..-+.|+.|..=.-....+. -+++. |+..+. +.+...|-.-.+.|.
T Consensus 573 ~~L~~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ksND---~iLsh-----LiTfLN-DkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKSND---VILSH-----LITFLN-DKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhccccc---chHHH-----HHHHhc-CccHHHHHHHHhhcc
Confidence 34456777788888888 779999998888777765543322111 13444 445666 667777755444444
Q ss_pred HHHHHhHhhhccC-ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 118 EVARNLIDDAGNN-LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 118 ~i~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.++-.+ |.. .-..|+|.+.|+++|+.+.|-..|+.++..+++.- .+ +++.-.|.+-+.-.+-.| +.=||.+
T Consensus 643 gvsi~V----G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hP-N~WIR~~ 715 (1431)
T KOG1240|consen 643 GVSIFV----GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHP-NLWIRRA 715 (1431)
T ss_pred ceEEEE----eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCc-hHHHHHH
Confidence 332211 111 12459999999999999999999999999988752 12 234444444445556677 7778887
Q ss_pred hhcC
Q psy15255 196 QLKF 199 (199)
Q Consensus 196 A~~f 199 (199)
+|.|
T Consensus 716 ~~~i 719 (1431)
T KOG1240|consen 716 VLGI 719 (1431)
T ss_pred HHHH
Confidence 7754
No 113
>KOG1061|consensus
Probab=94.64 E-value=0.47 Score=43.28 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
.-.++-.-+..++.+ .++-||++++..++.+-...-+.-....-.+.+.. ++. ++++.|--.|...+.+|
T Consensus 118 i~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~--------ll~-D~~p~VVAnAlaaL~eI 187 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKD--------LLS-DSNPMVVANALAALSEI 187 (734)
T ss_pred HHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHH--------Hhc-CCCchHHHHHHHHHHHH
Confidence 346888889999999 99999999998888886554332223333333433 333 78888888888888887
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.....+.....--+.+...+...+..- .| +-+.++..+..+.+++- .....+...+...+++. ++.|.+.|+|
T Consensus 188 ~e~~~~~~~~~l~~~~~~~lL~al~ec~EW----~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~-n~avvlsavK 261 (734)
T KOG1061|consen 188 HESHPSVNLLELNPQLINKLLEALNECTEW----GQIFILDCLAEYVPKDS-REAEDICERLTPRLQHA-NSAVVLSAVK 261 (734)
T ss_pred HHhCCCCCcccccHHHHHHHHHHHHHhhhh----hHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccC-CcceEeehHH
Confidence 765543111222333444444443321 22 23344555555555442 12234555555555554 5555555544
No 114
>KOG1248|consensus
Probab=94.55 E-value=3.4 Score=39.84 Aligned_cols=159 Identities=12% Similarity=0.098 Sum_probs=97.6
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhhcCc-CCCCChHHHHHHHHHHHHHHHHh-hccc
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQT--CDNDNIRRKICDAAAEVARNLIDD-AGNNLWPEFLQNNLKSQIILLLQ-TCDN 105 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~--e~~~~vR~~~~~~ia~la~~~l~~-~~~~~WpeLl~~~ik~~ll~~l~-~~~~ 105 (199)
..+++.++.+....+-..+.+++-. +.+...|+.+-+++-.+.+..... .|++.-++.+.. .+..+. ....
T Consensus 722 ~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-----fl~~Isagl~g 796 (1176)
T KOG1248|consen 722 KRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-----FLSIISAGLVG 796 (1176)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-----HHHHHHhhhcc
Confidence 4556667766665555555555443 245566888888888887432221 222221333332 222222 1113
Q ss_pred HHHHHHHHHHHHHHHHHhHh--hh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVARNLID--DA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQ 181 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~--~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~ 181 (199)
...++.+++ |..+...+.+ +. .....+.++..+.-++.+.+++++.+|+..+..++..+++. +.+|.+.|++-+.
T Consensus 797 d~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 797 DSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred cHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
Confidence 344555555 4333333332 11 12456778888888888999999999999999999888877 5789999988888
Q ss_pred HhhCCCCCHHHhhh
Q psy15255 182 QCLLPPNPYSVQAL 195 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~ 195 (199)
...+|. ...+|..
T Consensus 876 ~ls~d~-k~~~r~K 888 (1176)
T KOG1248|consen 876 ALSHDH-KIKVRKK 888 (1176)
T ss_pred HHHHhh-hHHHHHH
Confidence 887875 6667654
No 115
>KOG1949|consensus
Probab=94.54 E-value=0.56 Score=42.81 Aligned_cols=160 Identities=10% Similarity=0.057 Sum_probs=98.5
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e----~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
-..|...+-+-.+.|-.-+++.+-+. +...+-.+...++|-.+..- .-.+.-.|++-.+.+..|...++ .++
T Consensus 112 frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqk---k~~qgVeeml~rL~~p~l~R~L~-a~N 187 (1005)
T KOG1949|consen 112 FRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQK---KVRQGVEEMLYRLYKPILWRGLK-ARN 187 (1005)
T ss_pred HHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHhHHHHHhhc-cCc
Confidence 34677777666666666666665542 44455666666777665442 01355677888888888999999 889
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHH----HHHHHHhcCCCHHHHHHHHHHHHhh----hHhhhhhhHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFL----QFLFQCANSDNTTLKESALRLFTSV----PEIFGNQESTYLVVIK 177 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll----~~l~~~~~~~~~~vr~~a~~~l~~i----~e~~~~~l~~~~~~l~ 177 (199)
..||..|+.+..+.....-++.-....+.++ ..+..++.|+=|.||..|..-++.+ -+.+++. -...++
T Consensus 188 s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~---i~~~ll 264 (1005)
T KOG1949|consen 188 SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT---ILIDLL 264 (1005)
T ss_pred hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH---HHHHHH
Confidence 9999999988877654332221112334443 3566777899999997665555554 4444443 222334
Q ss_pred HHHHHhh-CCCCCHHHhhhhh
Q psy15255 178 QMLQQCL-LPPNPYSVQALQL 197 (199)
Q Consensus 178 ~~l~~~l-~d~~~~~Vr~~A~ 197 (199)
..+..-+ .|. ..+||...+
T Consensus 265 ~kI~d~~a~dt-~s~VR~svf 284 (1005)
T KOG1949|consen 265 KKITDELAFDT-SSDVRCSVF 284 (1005)
T ss_pred HHHHHHhhhcc-chheehhHh
Confidence 4443333 343 668887654
No 116
>KOG2025|consensus
Probab=94.48 E-value=0.88 Score=41.54 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-HHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
+--+++-..+|.+..+ ++..||-..|+.++.+... +..-+|- ...+.+..+..++ +-.|.||..|+-+++
T Consensus 81 DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~------~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDE------NAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALS 151 (892)
T ss_pred hHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhcc------ccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHH
Confidence 4557777788888887 9999999999999999852 3444444 3333333333344 677899999888776
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTS 160 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~ 160 (199)
.+=. +.+... -.....+...++ ||++.||.+|+..+..
T Consensus 152 rlQ~----d~~dee-~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 152 RLQG----DPKDEE-CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHhc----CCCCCc-ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 5432 111222 234555566665 7899999999987653
No 117
>KOG2149|consensus
Probab=94.48 E-value=0.21 Score=42.35 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=78.4
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVI 176 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l 176 (199)
..+. .-+..+|..|..-+-.+...-++ ....+.-.+++.+...+.|.|..+|....+++-.++.-.... +.++...+
T Consensus 65 ~qlk-HhNakvRkdal~glkd~l~s~p~-~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 65 SQLK-HHNAKVRKDALNGLKDLLKSHPA-ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred hhhc-CchHhhhHHHHHHHHHHHHhChH-HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 3444 67788999888888777665332 233577788999999999999999999999988866554443 57899999
Q ss_pred HHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 177 KQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 177 ~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+++..+|.+. .++||..+.+|
T Consensus 143 ~~yi~~AMThi-t~~i~~dslkf 164 (393)
T KOG2149|consen 143 MPYISSAMTHI-TPEIQEDSLKF 164 (393)
T ss_pred HHHHHHHHhhc-cHHHHHhhHHH
Confidence 99999999997 99999988876
No 118
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.47 E-value=1.9 Score=34.18 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHH
Q psy15255 62 RKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLL-QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLF 140 (199)
Q Consensus 62 ~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l-~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~ 140 (199)
-.++..+..+.+.. .+.|+++++. +..++ + +.++.++..+.+.+..+.....-+ ....|.-+.+-+
T Consensus 102 i~~a~s~~~ic~~~-----p~~g~~ll~~-----ls~~L~~-~~~~~~~alale~l~~Lc~~~vvd-~~s~w~vl~~~l- 168 (234)
T PF12530_consen 102 ISIAASIRDICCSR-----PDHGVDLLPL-----LSGCLNQ-SCDEVAQALALEALAPLCEAEVVD-FYSAWKVLQKKL- 168 (234)
T ss_pred HHHHHHHHHHHHhC-----hhhHHHHHHH-----HHHHHhc-cccHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHhc-
Confidence 33445555665553 4499999885 55667 5 677788888899998887654421 246787777765
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhHhhh--hhhHHHHHHHHHHHHHhhCCCCC-------HHHhhhhhc
Q psy15255 141 QCANSDNTTLKESALRLFTSVPEIFG--NQESTYLVVIKQMLQQCLLPPNP-------YSVQALQLK 198 (199)
Q Consensus 141 ~~~~~~~~~vr~~a~~~l~~i~e~~~--~~l~~~~~~l~~~l~~~l~d~~~-------~~Vr~~A~~ 198 (199)
-.+..|.+-..-+..+.-+...-- ++...+...++..+-+...+. + .+|+..|++
T Consensus 169 --~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~-~~~~~~~~~~~~~~a~~ 232 (234)
T PF12530_consen 169 --SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS-DVNVASQWTSVRLAAFE 232 (234)
T ss_pred --CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHHHh
Confidence 223355555444444443332211 223456677888887777775 5 467766653
No 119
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.45 E-value=0.09 Score=39.61 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l 184 (199)
--.+|+.|.+++..+...... .-.+.+++..+..++.| +..+|..++..+..++...+..+.+..+.+..-+...+
T Consensus 40 GLelRK~ayE~lytlLd~~~~---~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLS---RIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCS---SS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 346899999999998875433 34678999999999999 99999999999999998887776555666655554444
No 120
>KOG1991|consensus
Probab=94.44 E-value=1.8 Score=40.78 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHh----c-CCchhHHHH--HHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQ----T-CDNDNIRRK--ICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~----~-e~~~~vR~~--~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~ 111 (199)
++...+-.-+.+.|. + .++...|.+ +-.++|.|++.+.+. .....-+...+-+-++..|+ ++..-.|.+
T Consensus 406 e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~---s~~~~~mE~flv~hVfP~f~-s~~g~Lrar 481 (1010)
T KOG1991|consen 406 ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK---SPYKSQMEYFLVNHVFPEFQ-SPYGYLRAR 481 (1010)
T ss_pred hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC---CchHHHHHHHHHHHhhHhhc-CchhHHHHH
Confidence 333444555555555 1 245555644 445677777666553 22222222222222445566 788889999
Q ss_pred HHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhh---hhhHHHHHHHHHHHHHhhCCC
Q psy15255 112 ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFG---NQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 112 a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~---~~l~~~~~~l~~~l~~~l~d~ 187 (199)
||.+++.+++....+ ....-+.+....+++. |.+-.||..|.-|+..+.+... ..+.+|...+++-+......-
T Consensus 482 ac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 999999988654432 3556778888889998 7788899988888988886654 336777777777776665553
No 121
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.42 E-value=0.92 Score=34.67 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIK 177 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~ 177 (199)
+++..+|..|.+++..+... ++.++ .+-+|.+..+..|+++.+|..|...+..+.+-.+.-+ ..+.+.+-
T Consensus 19 ~~~~~vr~~Al~~l~~il~q----GLvnP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~ 89 (187)
T PF12830_consen 19 SSDDSVRLAALQVLELILRQ----GLVNP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIR 89 (187)
T ss_pred CCCHHHHHHHHHHHHHHHhc----CCCCh-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68899999999999877753 22233 3679999999999999999999999999988776554 34455543
No 122
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.41 E-value=1.1 Score=31.02 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQ 182 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~ 182 (199)
....-|.++...+..+.. ..........|.+...|..++. .+..|+.|+++-..++..++++ +.+..+.+...+..
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALE--IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 455567778888888777 4332222334444444444443 4489999999999999988765 67777777666654
Q ss_pred h
Q psy15255 183 C 183 (199)
Q Consensus 183 ~ 183 (199)
.
T Consensus 104 ~ 104 (107)
T PF08064_consen 104 L 104 (107)
T ss_pred h
Confidence 4
No 123
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.38 E-value=0.22 Score=44.10 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH----HHHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES----TYLVVIKQM 179 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~----~~~~~l~~~ 179 (199)
.+...|..+-++++.++...+.. ....| .++..+|+.+.++++++|.+.-.+++.++..+...-. .....+..+
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l-~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l 463 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSL-FSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELL 463 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccc-ccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 46778999999999999877642 22344 6889999999888999999999999999887764322 112223333
Q ss_pred HHHhhCCCCCHHHhhhhhcC
Q psy15255 180 LQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 180 l~~~l~d~~~~~Vr~~A~~f 199 (199)
+....++. ...+|..|++|
T Consensus 464 ~~~~~~~~-~~~~R~~avk~ 482 (501)
T PF13001_consen 464 LLSYIQSE-VRSCRYAAVKY 482 (501)
T ss_pred HHhhccch-hHHHHHHHHHH
Confidence 34444454 77899999886
No 124
>KOG0567|consensus
Probab=94.36 E-value=1.2 Score=36.03 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhhHh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~e~ 164 (199)
+...+. .++.-.||.++.+++.+- -|.-+|.+.+.+.+ ..+-||.-|..+|+.|...
T Consensus 192 l~~~l~-~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 192 LIDGLA-DDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred HHHhcc-cchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 555555 447777877666655432 24445555555554 4889999999999998753
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.36 E-value=2.8 Score=37.53 Aligned_cols=151 Identities=14% Similarity=0.212 Sum_probs=80.6
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-H
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-P 85 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-p 85 (199)
+..+....++|+-++-+.++. ++.+.++.- ..++.+..| ++..||.++-.-+..+.+. +..| +
T Consensus 32 ~kg~~k~K~Laaq~I~kffk~-----FP~l~~~Ai----~a~~DLcED-ed~~iR~~aik~lp~~ck~------~~~~v~ 95 (556)
T PF05918_consen 32 VKGSPKEKRLAAQFIPKFFKH-----FPDLQEEAI----NAQLDLCED-EDVQIRKQAIKGLPQLCKD------NPEHVS 95 (556)
T ss_dssp GGS-HHHHHHHHHHHHHHHCC------GGGHHHHH----HHHHHHHT--SSHHHHHHHHHHGGGG--T--------T-HH
T ss_pred ccCCHHHHHHHHHHHHHHHhh-----ChhhHHHHH----HHHHHHHhc-ccHHHHHHHHHhHHHHHHh------HHHHHh
Confidence 334678889999998888653 444444444 457888888 7788999876666666543 2333 4
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhhH
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN--SDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vr~~a~~~l~~i~e 163 (199)
-+... |.++++ .+++.....+-.++..+....+. ..|-.++.+... +++..+|+-++.-+..-+-
T Consensus 96 kvaDv-----L~QlL~-tdd~~E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 96 KVADV-----LVQLLQ-TDDPVELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HHHHH-----HHHHTT----HHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHHHH-----HHHHHh-cccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 44444 667888 44444444444556666654332 333334344332 4577899998887754443
Q ss_pred hhhhh-hH---HHHHHHHHHHHHhhCC
Q psy15255 164 IFGNQ-ES---TYLVVIKQMLQQCLLP 186 (199)
Q Consensus 164 ~~~~~-l~---~~~~~l~~~l~~~l~d 186 (199)
.+... +. .--..|...+...|+|
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 33333 22 1223445555566666
No 126
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.27 E-value=2.1 Score=35.53 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=67.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|-+|+.-.--..|..+|.++...|...+..+.+....+-+.+.++-.+...+.+||-.-+..+-...--+++.+.+....
T Consensus 59 LaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~ 138 (307)
T PF04118_consen 59 LAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKG 138 (307)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 45566523335688889999999998877666667777888888888888888899888888777766666666666666
Q ss_pred HHHHHHHhhCCC
Q psy15255 176 IKQMLQQCLLPP 187 (199)
Q Consensus 176 l~~~l~~~l~d~ 187 (199)
++.-+..++.|+
T Consensus 139 li~slLpGLede 150 (307)
T PF04118_consen 139 LILSLLPGLEDE 150 (307)
T ss_pred HHHHhccccccC
Confidence 666666677764
No 127
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.15 E-value=1.4 Score=39.68 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
-+.+-..+|.++.+ ++..||...++.++.+.... ..-.|.+-..++..|.+-+= +-.+.||..|..+++.+-
T Consensus 89 V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v------~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 89 VAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVV------REIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHH
Confidence 35566677888887 99999999999999987543 22224444444434444333 677889999888887644
Q ss_pred HHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFT 159 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~ 159 (199)
... .+.-+.....|...++ ||+..||.+|+--+.
T Consensus 161 e~~-----~neen~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 161 EME-----LNEENRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred hcc-----CChHHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 211 1233345556666665 789999999987654
No 128
>KOG1837|consensus
Probab=94.12 E-value=1.8 Score=42.76 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcchhh-HhhhhccCHhhHHH----HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 13 ERQMSAVLLRKIFSTDF-IEIYSKLAVNDQNN----LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~~~-~~~~~~l~~~~~~~----ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
.|++.--.+++.+..|. +..|. .+.+.. +-.++.+.... .+..+.-...+++++++...-.+ +.|+++
T Consensus 1470 ~~~Lvl~cl~~~~~~Dt~~~f~t---~~r~~~~~~p~v~ql~n~~~e--~~~~~~v~~~li~~i~~~~~a~~--~d~~pl 1542 (1621)
T KOG1837|consen 1470 LGTLVLNCLKDLFLFDTIESFVT---KSRFELLSYPLVSQLVNVLLE--FYASDIVSKLLIAEIASDSVADK--DDLKPL 1542 (1621)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHh---hhhhhhhhhhhHHHHHHhhcc--chhhhHHHHHHHHHHHhhccCCh--hhhHHH
Confidence 44555556666666654 33332 122221 22333332222 22333344456666666654332 229999
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
... +++-.. +.+..+|..|...+..+...+.+ +.....|+++|++-+++.|.+.+|-..+-..+..+-+.+++
T Consensus 1543 ~~k-----~l~~tr-ss~~~~r~~ai~~~~~l~~~lge-~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1543 NQK-----ILKKTR-SSSRKARYLAIIQVKLLYTKLGE-NVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHH-----HHHHhc-cccHHHHHHHHHHHHHHHHHhcc-hhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 775 333444 67788999988888877776543 22345699999999999998888876666666666666666
Q ss_pred hhH
Q psy15255 168 QES 170 (199)
Q Consensus 168 ~l~ 170 (199)
.+.
T Consensus 1616 ~l~ 1618 (1621)
T KOG1837|consen 1616 PLQ 1618 (1621)
T ss_pred hhh
Confidence 443
No 129
>KOG0915|consensus
Probab=94.05 E-value=0.29 Score=47.88 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=65.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhHhh---hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHH
Q psy15255 102 TCDNDNIRRKICDAAAEVARNLIDD---AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIK 177 (199)
Q Consensus 102 ~~~~~~vr~~a~~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~ 177 (199)
.+|++.|+.. ...|=..++.+ .-..+.++++.-|.-.+.+..|+||+++|-|+..+...-+.+ +..++..+-
T Consensus 1008 yDP~~~Vq~a----M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw 1083 (1702)
T KOG0915|consen 1008 YDPDKKVQDA----MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELW 1083 (1702)
T ss_pred cCCcHHHHHH----HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 5777777744 44444444432 122577888888888899999999999999999999775433 455666777
Q ss_pred HHHHHhhCCCCCHHHhhhhhc
Q psy15255 178 QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.++...|.|= .+.||.+|=+
T Consensus 1084 ~~~fRvmDDI-KEsVR~aa~~ 1103 (1702)
T KOG0915|consen 1084 EAAFRVMDDI-KESVREAADK 1103 (1702)
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 7777777775 6779988754
No 130
>KOG1992|consensus
Probab=94.02 E-value=2.4 Score=39.38 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCC-----C-CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 45 KSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAG-----N-NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 45 k~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~-----~-~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
--.+|+.+..+. +..+|.. ++.-.|+.++..+ . ..-++=-...+|..++.++- .....+.....+++.
T Consensus 39 ~l~lL~Lv~~~~~d~~~r~a----aav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl-~s~~~iQ~qlseal~ 113 (960)
T KOG1992|consen 39 PLLLLNLVANGQQDPQIRVA----AAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLML-SSPFNIQKQLSEALS 113 (960)
T ss_pred hHHHHHHHhccCcChhHHHH----HHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 346788888755 6677774 5555666654321 1 12233356788888888876 455667777778888
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.|+....+ ..||.|+|-+...++++|-.+-.+.+....++.
T Consensus 114 ~Ig~~DFP----~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 114 LIGKRDFP----DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred HHhccccc----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 88876543 699999999999999887665555555544443
No 131
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.96 E-value=2.1 Score=35.06 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
+.+.+.++.++++ +++.||...=.+.|...-.. ..+ .+.++. ++..++ ..+..++..+++++..++
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld------~~~a~~~l~l-----~~~~~~-~~~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLD------KELAKEHLPL-----FLQALQ-KDDEEVKITALKALFDLL 92 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC------hHHHHHHHHH-----HHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 5666777789998 88899998888888776332 111 111222 445565 568899999999999988
Q ss_pred HHhHhhh-ccC-------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 121 RNLIDDA-GNN-------LWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 121 ~~~~~~~-~~~-------~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
....... ... .-..++..+.+.+.+.++.+|..|++.++++.
T Consensus 93 ~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 93 LTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6543211 112 23569999999999999999999999999976
No 132
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.96 E-value=3.4 Score=42.07 Aligned_cols=114 Identities=11% Similarity=0.253 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHH----HHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQ----IILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~----ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
+...+..+-.+ ++..|+-.+-+.+-.++-..++. .||...-+... +...+....+..+|..+.+|+..|
T Consensus 1138 l~~hf~~vg~~-~n~~va~fAidsLrQLs~kfle~------eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qm 1210 (1780)
T PLN03076 1138 LSDFFVTIGCS-ENLSIAIFAMDSLRQLSMKFLER------EELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQM 1210 (1780)
T ss_pred HHHHHHHhcCC-cchhHHHHHHHHHHHHHHHhcch------hhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 33344443333 45667777667666666666542 33311111111 333444567789999999999988
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
...-.+ .....|..++.+|...+.+.++.+-+.|+..+..|+...
T Consensus 1211 I~s~~~-nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1211 VLSRVN-NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHh-hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 765543 346799999999999988888888899999999887653
No 133
>KOG1993|consensus
Probab=93.91 E-value=0.53 Score=43.40 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCC--CCCh--HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAG--NNLW--PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 43 ~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~--~~~W--peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
.+-..+.+...+. .+-.||. ++.+-.|+-++..+ +..| |.=-+..++..++..+. ++++.+....+-.++
T Consensus 32 GF~~~L~sI~l~~t~dv~vRW----mAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~-E~~nQlaiQ~Avlis 106 (978)
T KOG1993|consen 32 GFFSKLYSIFLSKTNDVSVRW----MAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD-EENNQLAIQNAVLIS 106 (978)
T ss_pred cHHHHHHHHHhccccceeeee----ehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHH
Confidence 3444445544442 3445666 56777777776432 2222 22245677778999998 889999888888999
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCC----CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSD----NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~----~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.||+...+ ..||+|+|.+.+.+++. |..+..-.+-.+..+...+...
T Consensus 107 rIARlDyP----reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~ 157 (978)
T KOG1993|consen 107 RIARLDYP----REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK 157 (978)
T ss_pred HHHhcCCC----ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99986553 79999999999999876 7777777777788877666543
No 134
>KOG2020|consensus
Probab=93.89 E-value=1.3 Score=42.55 Aligned_cols=73 Identities=15% Similarity=0.358 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHHhhcCcCCC
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC--------DNDNIRRKICDAAAEVARNLIDDAGN 81 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e--------~~~~vR~~~~~~ia~la~~~l~~~~~ 81 (199)
.+.+|.+|--+|-+.++.. |..+|.+.|.++|.-....+-.. ....++.+.+...-+++|+.- .
T Consensus 58 ~~~~k~f~Lqlle~vik~~----W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eW----p 129 (1041)
T KOG2020|consen 58 NPILKYFALQLLENVIKFR----WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREW----P 129 (1041)
T ss_pred CchhheeeHHHHHHHHHHh----cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHH----H
Confidence 4455555555555555555 99999999999999888776542 134578888888889988864 4
Q ss_pred CChHHHHHH
Q psy15255 82 NLWPEFLQN 90 (199)
Q Consensus 82 ~~WpeLl~~ 90 (199)
+.||++++.
T Consensus 130 ~~wp~~i~d 138 (1041)
T KOG2020|consen 130 AIWPTFIPD 138 (1041)
T ss_pred hhcchhhhh
Confidence 788887775
No 135
>KOG2021|consensus
Probab=93.77 E-value=5.7 Score=36.84 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=91.1
Q ss_pred hhccCHhhHHHHHHHHHHHHh-----cC---CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcc
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQ-----TC---DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCD 104 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~-----~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~ 104 (199)
|...+...+++||..+..-++ +| .-+-+|++++++.+.|.-.+++. .|+.+.-. ++..++.++
T Consensus 71 yne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~d-----lmsv~~~~s 141 (980)
T KOG2021|consen 71 YNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDD-----LMSVFQVDS 141 (980)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHH-----HHHHHhccc
Confidence 455778888888887765554 43 13568999999999999888873 49987443 222333111
Q ss_pred cHHHHHHHHHHHHHHHHHhHh------------------hhccCChHHHHHHHHHHhc---CC-CHHHHHHHHHHHHhhh
Q psy15255 105 NDNIRRKICDAAAEVARNLID------------------DAGNNLWPEFLQFLFQCAN---SD-NTTLKESALRLFTSVP 162 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~------------------~~~~~~~~~ll~~l~~~~~---~~-~~~vr~~a~~~l~~i~ 162 (199)
..+.-.-=+.++..|-+.+.+ ..-.+..|.+..+-.++++ +. ++.+--..+.+++.++
T Consensus 142 ~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fV 221 (980)
T KOG2021|consen 142 AISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFV 221 (980)
T ss_pred chhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 110000011222222222211 0112566888888888875 23 7888889999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 163 EIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 163 e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++=.+.. -+..++++...+. -+++|.+||+
T Consensus 222 SWIdInLIa-Nd~f~nLLy~fl~---ieelR~aac~ 253 (980)
T KOG2021|consen 222 SWIDINLIA-NDYFLNLLYKFLN---IEELRIAACN 253 (980)
T ss_pred hhhhhhhhh-chhHHHHHHHHHh---HHHHHHHHHH
Confidence 988766421 1344445555554 3468888874
No 136
>KOG1517|consensus
Probab=93.65 E-value=1.3 Score=42.13 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLW----PEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~----~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.+-.|.-+|-|++.+-... ....| ..-...+...+.|+.++||-+|+.+|+.+...
T Consensus 613 ~pLLrQW~~icLG~LW~d~----~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDY----DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhc----chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 4555555555555544322 22333 33455667778899999999999999999975
No 137
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.58 E-value=0.17 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
.-+.+...+.+.+.|+++.||++|+.++
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4468999999999999999999998763
No 138
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.55 E-value=0.89 Score=38.22 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-HHHHHHHHHHHHHhhcccH--HHHHHHHHHHHHHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQNNLKSQIILLLQTCDND--NIRRKICDAAAEVARN 122 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-l~~~ik~~ll~~l~~~~~~--~vr~~a~~~i~~i~~~ 122 (199)
-.++++|.+ ++..||.++-=+.|.+|.-. ....+. ++.-.-.-++.++. +... ++-+.+-=++..+.+.
T Consensus 160 PlfiqlL~s-~~~~V~eQavWALGNiAGDS------~~~RD~vL~~galeplL~ll~-ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 160 PLFIQLLSS-TEDDVREQAVWALGNIAGDS------EGCRDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred HHHHHHHcC-chHHHHHHHHHHhccccCCc------hhHHHHHHhcCchHHHHHHHH-hccchHHHHHHhHHHHHHhhCC
Confidence 357788888 88899988777777776321 111221 11111112555565 3333 2222333344443331
Q ss_pred hHhhhccCChH---HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 123 LIDDAGNNLWP---EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 123 ~~~~~~~~~~~---~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
- ...+.|. .-+|.|++++.+.|+.+-.-||=+++++.+.-.+.+...++ .++.-+...+.++ +..|+.-|+
T Consensus 232 k---nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPal 306 (526)
T COG5064 232 K---NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPAL 306 (526)
T ss_pred C---CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHH
Confidence 1 1235675 47899999999999999999999999988765555444444 5677788888886 777776654
No 139
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.48 E-value=1.4 Score=37.17 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=51.9
Q ss_pred HHHHHHHHHhHhh---hccCChHHHHHHHHHHhc----------CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH
Q psy15255 114 DAAAEVARNLIDD---AGNNLWPEFLQFLFQCAN----------SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180 (199)
Q Consensus 114 ~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~----------~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l 180 (199)
..+..++..+..+ +...+...|+|.++.|+- +..|.+|+.|...++.++..++..-......|...+
T Consensus 235 ~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl 314 (343)
T cd08050 235 IYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 4455555555542 123677889999999883 235799999999999999888766433455666666
Q ss_pred HHhhCCC
Q psy15255 181 QQCLLPP 187 (199)
Q Consensus 181 ~~~l~d~ 187 (199)
...+.|+
T Consensus 315 ~k~l~d~ 321 (343)
T cd08050 315 LKALLDP 321 (343)
T ss_pred HHHHcCC
Confidence 6677765
No 140
>KOG4413|consensus
Probab=93.41 E-value=0.24 Score=41.29 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=57.3
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hH----HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ES----TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~----~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....|.+.|.+..++..+|..|+..+|+-++.+.|..+.+ .. -.-+.|.+.+..|+..+ |.+|..+|.+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAie 150 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIE 150 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHH
Confidence 34667999999999999999999999999999999987743 21 11357788888899996 9999998875
No 141
>KOG0414|consensus
Probab=93.37 E-value=3.6 Score=39.69 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhcchh-----------hHhhhhccCHhhHHHHHHH---HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC
Q psy15255 14 RQMSAVLLRKIFSTD-----------FIEIYSKLAVNDQNNLKSQ---IILLLQTCDNDNIRRKICDAAAEVARNLIDDA 79 (199)
Q Consensus 14 R~~a~vlLr~~~~~~-----------~~~~~~~l~~~~~~~ik~~---ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~ 79 (199)
=++++.++|..-+.. ...+...++...+...-+. ++..|.. .+..+|+.+-.+.|.+.-..+...
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~-es~~lRnavlei~~n~V~~~l~d~ 347 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDS-ESYTLRNAVLEICANLVASELRDE 347 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhcch
Confidence 355677777765432 2445556666666544443 3443444 788889888777777776665532
Q ss_pred CCCChHHHHHHHHHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 80 GNNLWPEFLQNNLKSQIILLLQ---TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 80 ~~~~WpeLl~~~ik~~ll~~l~---~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
... +.. .-++.+++..+. .+-++-+|.++.++...|...-. -..+.|.+++...+..++|.+.-||..|+.
T Consensus 348 e~~--~~s--k~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s--~p~~~~~eV~~la~grl~DkSslVRk~Ai~ 421 (1251)
T KOG0414|consen 348 ELE--EMS--KSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS--IPLGSRTEVLELAIGRLEDKSSLVRKNAIQ 421 (1251)
T ss_pred hhh--HHH--HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC--CCccHHHHHHHHHhcccccccHHHHHHHHH
Confidence 100 000 011112333332 26788999999888887765432 135789999999999999999999999999
Q ss_pred HHHhhhHhhh
Q psy15255 157 LFTSVPEIFG 166 (199)
Q Consensus 157 ~l~~i~e~~~ 166 (199)
.+..+....+
T Consensus 422 Ll~~~L~~~P 431 (1251)
T KOG0414|consen 422 LLSSLLDRHP 431 (1251)
T ss_pred HHHHHHhcCC
Confidence 9999986544
No 142
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.28 E-value=0.093 Score=29.97 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=27.7
Q ss_pred HHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 157 LFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 157 ~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+++.+.+.-+.-+.. +.+...+...+.|+ ++.||.+|+++
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~-s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDS-SPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 345555543322322 47888889999998 99999999864
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.17 E-value=2.6 Score=37.92 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
++.-+|.+|+.+++++.-...+...+ ..+...+..|+.|. |.+||--|
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~-DdeVRdrA 546 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQ-DDEVRDRA 546 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcc-cHHHHHHH
Confidence 45578999999999998777665544 67778889999997 99999543
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.03 E-value=0.44 Score=36.36 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh-hhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI-FGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~-~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+.+||.+++++...+...|..|.+.+..+++. -++.+-|.++.++.-+..+++.. |++|...+++
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~ 102 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLK 102 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3467899999999988888999999999999988 55667888999988999999997 9999877653
No 145
>KOG1060|consensus
Probab=93.02 E-value=1.8 Score=40.07 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=68.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.+=..|+| |++.+|..+-.+.+.+= -|-+.|..+ -.+-++.. ++++-||..|+..|-.+-+-.
T Consensus 112 tfQk~L~D-pN~LiRasALRvlSsIR-----------vp~IaPI~l-lAIk~~~~-D~s~yVRk~AA~AIpKLYsLd--- 174 (968)
T KOG1060|consen 112 TFQKALKD-PNQLIRASALRVLSSIR-----------VPMIAPIML-LAIKKAVT-DPSPYVRKTAAHAIPKLYSLD--- 174 (968)
T ss_pred HHHhhhcC-CcHHHHHHHHHHHHhcc-----------hhhHHHHHH-HHHHHHhc-CCcHHHHHHHHHhhHHHhcCC---
Confidence 34567899 99999987666555431 223333210 00113444 889999999888887655422
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
..+-++|...+-.++.|.++.|--+|+.+|-.+|..
T Consensus 175 --~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 175 --PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred --hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 245569999999999999999999999999998854
No 146
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.94 E-value=2.4 Score=38.29 Aligned_cols=140 Identities=7% Similarity=0.100 Sum_probs=69.6
Q ss_pred HhhHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHhhcCcC---------CCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 38 VNDQNNLKSQIILLLQT---CDNDNIRRKICDAAAEVARNLIDDA---------GNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~---e~~~~vR~~~~~~ia~la~~~l~~~---------~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
..+++.++. ++.++.. .+++.+|.++.-..|.+++...... ....-.++.+.+. ..+-.... ..+
T Consensus 427 ~Pt~e~l~~-l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~-~~~ 503 (618)
T PF01347_consen 427 RPTEELLKE-LFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLE-QELKEAVS-RGD 503 (618)
T ss_dssp ---HHHHHH-HHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHH-HHHHHHHH-TT-
T ss_pred CCCHHHHHH-HHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHH-HHHHHHhh-ccC
Confidence 444455543 3333332 3567889999999999998876542 1111111122111 11111222 333
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD---NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
...+..++.+++.+ .-|..++.+...+.+. +..+|.+|+.+|..+....++. ..+.+.+++.+
T Consensus 504 ~~~~~~~LkaLgN~-----------g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---v~~~l~~I~~n 569 (618)
T PF01347_consen 504 EEEKIVYLKALGNL-----------GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---VREILLPIFMN 569 (618)
T ss_dssp HHHHHHHHHHHHHH-----------T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---HHHHHHHHHH-
T ss_pred HHHHHHHHHHhhcc-----------CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---HHHHHHHHhcC
Confidence 34344444444332 2245566666666554 7789999999999886655433 33455555554
Q ss_pred hhCCCCCHHHhhhhh
Q psy15255 183 CLLPPNPYSVQALQL 197 (199)
Q Consensus 183 ~l~d~~~~~Vr~~A~ 197 (199)
- .++++||.+|+
T Consensus 570 ~---~e~~EvRiaA~ 581 (618)
T PF01347_consen 570 T---TEDPEVRIAAY 581 (618)
T ss_dssp T---TS-HHHHHHHH
T ss_pred C---CCChhHHHHHH
Confidence 3 24788999886
No 147
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.86 E-value=1.6 Score=35.98 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH------HHHHHHHHhhcccHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL------KSQIILLLQTCDNDNIRRKICDA 115 (199)
Q Consensus 43 ~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i------k~~ll~~l~~~~~~~vr~~a~~~ 115 (199)
.....++..|... ++..+.+-+-..+++++...- ...+-+....- -..++..+. .++..+...++.+
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-----~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~i 128 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-----SRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFI 128 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SS-----SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-----HHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHH
Confidence 4445556666665 777888888888888775541 11222211110 112455555 6788899999999
Q ss_pred HHHHHHHhHhhhccCChHHHHHHHHHHhcC----CCHHHHHHHHHHHHhhhH
Q psy15255 116 AAEVARNLIDDAGNNLWPEFLQFLFQCANS----DNTTLKESALRLFTSVPE 163 (199)
Q Consensus 116 i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~vr~~a~~~l~~i~e 163 (199)
+..++...... ......+.++.+++.+.+ ++..++..|+++++.++.
T Consensus 129 Lt~Ll~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 129 LTSLLSQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 88877643321 011113677777777765 355677889999998874
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.77 E-value=1.2 Score=31.53 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=58.4
Q ss_pred Hhhh----hccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 30 IEIY----SKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 30 ~~~~----~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
+.+| .++.++.-. +-..|.+.|..+.++.+-..+|.=+|++++.. |. |.+... +.-.|..++.++. +++
T Consensus 27 e~FW~ENa~kf~~~~~~-llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~-gr~ii~---~lg~K~~vM~Lm~-h~d 99 (119)
T PF11698_consen 27 EKFWRENADKFEENNFE-LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PN-GRNIIE---KLGAKERVMELMN-HED 99 (119)
T ss_dssp HHHHHHHSGGGSSGGGH-HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GG-GHHHHH---HHSHHHHHHHHTS--SS
T ss_pred ccHHHHHHHHHHHcccH-HHHHHHHHHccCCCcceeehhhcchHHHHHHC-hh-HHHHHH---hcChHHHHHHHhc-CCC
Confidence 5566 456555544 55568888866678999999999999999885 31 222222 2224667888888 899
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVAR 121 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~ 121 (199)
+.||..|+.++..+..
T Consensus 100 ~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 100 PEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 149
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.68 E-value=0.76 Score=41.06 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
..++..+..|++.|......+++ .-++-+..++.++.|.|..||..|++.|..+|..-++ |...|..+|.+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHH
Confidence 35677888877777776665543 4566788899999999999999999999999865432 44445555555
Q ss_pred hhCC
Q psy15255 183 CLLP 186 (199)
Q Consensus 183 ~l~d 186 (199)
+|+.
T Consensus 104 lL~t 107 (556)
T PF05918_consen 104 LLQT 107 (556)
T ss_dssp HTT-
T ss_pred HHhc
Confidence 5555
No 150
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.53 E-value=0.31 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.+|.|.+++.+++..+++.|+.+++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5778888899999999999999999875
No 151
>KOG1062|consensus
Probab=92.51 E-value=2.9 Score=38.74 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhhcc
Q psy15255 10 SVEERQMSAVLLRKIFS 26 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~ 26 (199)
+...|-+|+=.|-+.+.
T Consensus 307 ~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLL 323 (866)
T ss_pred CchHHHHHHHHHHHHhc
Confidence 34556666666555543
No 152
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.36 E-value=0.61 Score=31.48 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+...+.-++|+.+.+|-.|+..+..+++.-. ......+.+..++...++|+ |+=|=+.|++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~ 65 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIK 65 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHH
Confidence 4455666789999999999999999998765 22345688899999999997 8878777653
No 153
>KOG4224|consensus
Probab=92.34 E-value=0.27 Score=41.52 Aligned_cols=92 Identities=8% Similarity=-0.008 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh-h-hhhHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF-G-NQESTYLVVIKQML 180 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~-~-~~l~~~~~~l~~~l 180 (199)
..+..++..+...+..+-... ++...-.-.-=+|++..++.++|+.+|+.++.+++.|.=.. . +.+.+--+.+++.+
T Consensus 178 skdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 444555566555555443211 11000000123688889999999999999999999997332 2 33555445688889
Q ss_pred HHhhCCCCCHHHhhhh
Q psy15255 181 QQCLLPPNPYSVQALQ 196 (199)
Q Consensus 181 ~~~l~d~~~~~Vr~~A 196 (199)
...|.|+ +++|+..|
T Consensus 257 v~Lmd~~-s~kvkcqA 271 (550)
T KOG4224|consen 257 VDLMDDG-SDKVKCQA 271 (550)
T ss_pred HHHHhCC-ChHHHHHH
Confidence 9999998 99998665
No 154
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=1.1 Score=40.14 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHHHHH-HhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 44 LKSQIILL-LQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 44 ik~~ll~~-L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
+-+.+|+. ..| .+..||+++--.+|-+. ++ =|.+++. .++.+..+-++.||-..+-+++- +.
T Consensus 552 vv~~lLh~avsD-~nDDVrRAAViAlGfvc---~~------D~~~lv~-----tvelLs~shN~hVR~g~AvaLGi-ac- 614 (926)
T COG5116 552 VVSTLLHYAVSD-GNDDVRRAAVIALGFVC---CD------DRDLLVG-----TVELLSESHNFHVRAGVAVALGI-AC- 614 (926)
T ss_pred hHhhhheeeccc-CchHHHHHHHHheeeeE---ec------CcchhhH-----HHHHhhhccchhhhhhhHHHhhh-hh-
Confidence 33445554 666 88889986544444332 11 1233322 34455546678888664333332 21
Q ss_pred hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
. ...-..-+..|-.++.|+..-||.+||-+.+.|.....+++.|....|...+.+.+.+.
T Consensus 615 --a---g~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 615 --A---GTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred --c---CCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 1 12233445566677889988999999999999998888888777777777777777664
No 155
>KOG0392|consensus
Probab=92.27 E-value=0.73 Score=44.56 Aligned_cols=109 Identities=11% Similarity=0.170 Sum_probs=75.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.++..+.+ +.+-+|.+++.+|+..++..... .. .++-+.++-++. +.+.-+|+.+...+..+.......
T Consensus 820 ~l~~~~~s-~~~a~r~~~ar~i~~~~k~~~~e--------~m-~~v~~~~~~ll~-~~~~~~~r~~a~e~~~~l~~~l~~ 888 (1549)
T KOG0392|consen 820 RLFFFVRS-IHIAVRYAAARCIGTMFKSATRE--------TM-ATVINGFLPLLG-DLDKFVRRQGADELIELLDAVLMV 888 (1549)
T ss_pred HHHHhccc-chHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHhhhcc-chhhHhhhhhHHHHHHHHHHhhcc
Confidence 44555566 78899999999999998775331 11 122233444555 455566777767766666655543
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
....+.+-|++.++.++.|....+|.+|=++|..+...++
T Consensus 889 ~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 889 GLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 3345557789999999999999999999999999876543
No 156
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.12 E-value=1.2 Score=40.72 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=73.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-cc----CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GN----NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~----~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
+.+++. +.+-..|-...++.+.+......+. -. .....|+..+..-++|.+|-+|.-|++.+.+++..-. ...
T Consensus 304 ~~~LLd-ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s-k~~ 381 (1128)
T COG5098 304 FDELLD-SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS-KTV 381 (1128)
T ss_pred HHHHhc-ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc-ccc
Confidence 555666 6667778777777777776654321 11 2456788888888899999999999999999987533 333
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-...+......+++|. +.-||..|++
T Consensus 382 ~~r~ev~~lv~r~lqDr-ss~VRrnaik 408 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDR-SSVVRRNAIK 408 (1128)
T ss_pred chHHHHHHHHHHHhhhh-hHHHHHHHHH
Confidence 34467777888899997 8889998875
No 157
>KOG1243|consensus
Probab=91.90 E-value=0.24 Score=44.79 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhcchhhHhhhhccCHh-hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH
Q psy15255 14 RQMSAVLLRKIFSTDFIEIYSKLAVN-DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL 92 (199)
Q Consensus 14 R~~a~vlLr~~~~~~~~~~~~~l~~~-~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i 92 (199)
|++=.+||.+.-. .-+.++++ ....|--++..++.| +++.+|.+.-..++.|+..+=. ++.=.|+++
T Consensus 344 r~iR~~LL~~i~~-----~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~---~~Ln~Ellr--- 411 (690)
T KOG1243|consen 344 RQIRLLLLQYIEK-----YIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSK---RNLNGELLR--- 411 (690)
T ss_pred hHHHHHHHHhHHH-----HhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhch---hhhcHHHHH---
Confidence 4444455555432 23556643 445788889999999 9999998888888888866522 233344444
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 93 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 93 k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
.+.-+|.+++..+|.....|++.|+.++... ..-.-|...+...+.|+-..-|.++..++....++++.. .-
T Consensus 412 ---~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~v 483 (690)
T KOG1243|consen 412 ---YLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--EV 483 (690)
T ss_pred ---HHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--hh
Confidence 2333445667778888777788777655321 112234445555678887778999999999999887654 22
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+.|.+.+.-...|+ +..||-.|.
T Consensus 484 a~kIlp~l~pl~vd~-e~~vr~~a~ 507 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDP-EKTVRDTAE 507 (690)
T ss_pred hhhccccccccccCc-ccchhhHHH
Confidence 355666666666776 777876654
No 158
>KOG0168|consensus
Probab=91.89 E-value=1 Score=41.87 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=55.1
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhcc-CChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGN-NLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~-~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.|++.++.+.++.....++.-+++++....++.+. -..+.++|.|.+++++. +.++.-.||+++.++||.+++.
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 37888887777777666666566655433222211 24578999999999987 8899999999999999999876
No 159
>KOG2062|consensus
Probab=91.53 E-value=0.87 Score=41.76 Aligned_cols=54 Identities=20% Similarity=0.018 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~ 165 (199)
+.+++||+.|.-.++.++. .=|+.+|...+++... ++.||.+|..+++-.|.--
T Consensus 566 D~nDDVrRaAVialGFVl~---------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLF---------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ccchHHHHHHHHHheeeEe---------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 8899999997777665442 2256666677777644 9999999999999887543
No 160
>KOG4653|consensus
Probab=91.41 E-value=12 Score=35.20 Aligned_cols=129 Identities=13% Similarity=0.176 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH---HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccC-Ch
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL---KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN-LW 132 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i---k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~-~~ 132 (199)
.+..|-++|.++..++... .|+...+. -...+.+++ +++...|-+++..++.++.... ++.. ..
T Consensus 819 ~~d~~lkVGEai~k~~qa~---------Gel~~~y~~~Li~tfl~gvr-epd~~~RaSS~a~lg~Lcq~~a--~~vsd~~ 886 (982)
T KOG4653|consen 819 QTDYRLKVGEAILKVAQAL---------GELVFKYKAVLINTFLSGVR-EPDHEFRASSLANLGQLCQLLA--FQVSDFF 886 (982)
T ss_pred CccceehHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHhcC-CchHHHHHhHHHHHHHHHHHHh--hhhhHHH
Confidence 3467788888888777654 12222111 122455666 7766677777777777665432 2222 33
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHH----HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYL----VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~----~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+.+..+.+..+ |+++.+|++|...+..+....+.++-+.. -.....+.+...+..|..++..|+
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaq 956 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQ 956 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 567777777665 77999999999999999987777754422 222222332323322666777765
No 161
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=91.40 E-value=2.2 Score=35.32 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
.-..+++.+.+ ++..+|..++...+.+.... .++. +...+. +.++.+|..+..+++.+
T Consensus 44 ~~~~~~~~l~~-~~~~vr~~aa~~l~~~~~~~-----------av~~-----l~~~l~-d~~~~vr~~a~~aLg~~---- 101 (335)
T COG1413 44 AADELLKLLED-EDLLVRLSAAVALGELGSEE-----------AVPL-----LRELLS-DEDPRVRDAAADALGEL---- 101 (335)
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHHhhhchHH-----------HHHH-----HHHHhc-CCCHHHHHHHHHHHHcc----
Confidence 34567888888 59999999888866664322 2222 334555 78889999987754432
Q ss_pred HhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhH
Q psy15255 124 IDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e 163 (199)
.-|+-++.+...++ |++..+|..+..+++.+-.
T Consensus 102 -------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 102 -------GDPEAVPPLVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred -------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 23455666666666 7899999999999998754
No 162
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.40 E-value=4.5 Score=36.27 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHhhcCcCCCCChH-HHHHHHHH---HHHHHHHhhcccHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTC---DNDNIRRKICDAAAEVARNLIDDAGNNLWP-EFLQNNLK---SQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~Wp-eLl~~~ik---~~ll~~l~~~~~~~vr~~ 111 (199)
.+++.++ .+++.+.+. +++.+|..+.-..|.+++..... ...++ .+.+.+++ +.|-.+.. +.+...+..
T Consensus 390 Pt~~~l~-~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~--~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 465 (574)
T smart00638 390 PTEEILK-ALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN--TPSCPDFVLEELLKYLHELLQQAVS-KGDEEEIQL 465 (574)
T ss_pred CCHHHHH-HHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC--CCCCChhhHHHHHHHHHHHHHHHHh-cCCchheee
Confidence 3444443 344555442 45677888888888888776543 22332 23232221 11222222 223222323
Q ss_pred HHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc---CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC
Q psy15255 112 ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN---SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN 188 (199)
Q Consensus 112 a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~ 188 (199)
...+++. -.-|..++.+...+. +.+..+|.+|+.+|..+....++. ..+.+.+++.+- .+
T Consensus 466 ~LkaLGN-----------~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---v~~~l~~i~~n~---~e 528 (574)
T smart00638 466 YLKALGN-----------AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---VQEVLLPIYLNR---AE 528 (574)
T ss_pred HHHhhhc-----------cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---HHHHHHHHHcCC---CC
Confidence 2333322 122333333333333 347789999999999877655443 334455554332 24
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
+++||.+|+
T Consensus 529 ~~EvRiaA~ 537 (574)
T smart00638 529 PPEVRMAAV 537 (574)
T ss_pred ChHHHHHHH
Confidence 788999886
No 163
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.34 E-value=6.8 Score=33.38 Aligned_cols=150 Identities=16% Similarity=0.222 Sum_probs=75.5
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIR 109 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr 109 (199)
++.|+ .+-.+|||..+ + .++....|+++++.+-.+.+.-- ..=.+.+..++.+ ++.-.+.+++.+.|
T Consensus 204 ~ElfE---ddP~EYIrrd~-e---~sd~~TrR~AA~dfl~~L~~~~~-----~~v~~i~~~~i~~-~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 204 EELFE---DDPEEYIRRDL-E---GSDSDTRRRAACDFLRSLCKKFE-----KQVTSILMQYIQQ-LLQQYASNPSNNWR 270 (370)
T ss_dssp HHHHH---HSHHHHHHHHS-C---SS---SHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHH-TTT-HH
T ss_pred HHHHc---cCHHHHHHhhc-c---ccccCCcHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHH-HHHHHhhCCcccHH
Confidence 45554 33446777754 2 23566778888888887776531 1111112222221 22222235566666
Q ss_pred HH--HHHHHHHHHHHhHh-hhccCC-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 110 RK--ICDAAAEVARNLID-DAGNNL-----------WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 110 ~~--a~~~i~~i~~~~~~-~~~~~~-----------~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
.+ |+..++.++..... ..|... ...++|-|. .-.+..|-+|-.|++.+..+-..+++ +....
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~ 346 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHH
Confidence 65 33344443322211 112221 122233333 22245777898999888887766654 36677
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+.++++++ +.-|+..|.
T Consensus 347 ~~~~l~~~L~~~-~~vv~tyAA 367 (370)
T PF08506_consen 347 IFPLLVNHLQSS-SYVVHTYAA 367 (370)
T ss_dssp HHHHHHHHTTSS--HHHHHHHH
T ss_pred HHHHHHHHhCCC-Ccchhhhhh
Confidence 888999999997 888887763
No 164
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.01 E-value=5.2 Score=29.86 Aligned_cols=90 Identities=17% Similarity=0.045 Sum_probs=58.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh--h---
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ--E--- 169 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~--l--- 169 (199)
+..+++ +.++.-|-.++..+..++..-..+.+..+-...+..+.+.++++ ++.+++.++.++..++....+. +
T Consensus 30 i~~LL~-s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 30 INSLLQ-SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHhC-CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 556676 66677777777777666654311112233344577777777765 6678999999999999876543 2
Q ss_pred --HHHHHHHHHHHHHhhCC
Q psy15255 170 --STYLVVIKQMLQQCLLP 186 (199)
Q Consensus 170 --~~~~~~l~~~l~~~l~d 186 (199)
.|+...+++.+.+.+++
T Consensus 109 i~tp~l~~~i~~ll~l~~~ 127 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD 127 (165)
T ss_pred HhhccHHHHHHHHHHHHhc
Confidence 35566666666666663
No 165
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=90.77 E-value=2.9 Score=39.17 Aligned_cols=110 Identities=16% Similarity=0.289 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--------HHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 44 LKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--------LQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 44 ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--------l~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
.-..|+....+. .+-..|. .+..-.|+-++ ..|.+= =..+||..++.++- +.+....-..+.
T Consensus 37 F~~kL~~I~~~~~~~m~lR~----~a~i~fkn~I~----~~W~~~~~~~i~p~e~v~IR~~l~~lii-~s~n~l~iq~a~ 107 (947)
T COG5657 37 FALKLLSINLSAFNSMSLRW----AALIQFKNYID----KHWREENGNSILPDENVLIRDELFSLII-SSSNQLQIQNAL 107 (947)
T ss_pred HHHHHHHHHhccccchhHHH----HHHHHHHhhHH----HHhhhhcccCCCCccchHHHHHHHHHHH-cccchHHHHHHH
Confidence 444566665553 2233444 34555666554 455541 12377888888887 343343335568
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+++.||....+ ..||+|+|-+...+++.|...-+..+.++..+.....
T Consensus 108 avs~IA~~DfP----deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 108 AVSRIARLDFP----DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHHHHHhccCc----ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 89998876554 6999999999999999887777777777777765544
No 166
>KOG0803|consensus
Probab=90.47 E-value=2.2 Score=41.91 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
--++..|.+|...+.++....-......-.|.....+.+++.|++.+||.....++..+...+.+.+.||...+++....
T Consensus 52 KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~ 131 (1312)
T KOG0803|consen 52 KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLG 131 (1312)
T ss_pred ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Confidence 35666777777877776654421111122344455566778899999999999999999999999999999999888877
Q ss_pred hhCCCCCHHHhhhhh
Q psy15255 183 CLLPPNPYSVQALQL 197 (199)
Q Consensus 183 ~l~d~~~~~Vr~~A~ 197 (199)
+.-|. +..|..+|.
T Consensus 132 ~~~d~-~~~vs~aa~ 145 (1312)
T KOG0803|consen 132 GQFDL-DYPVSEAAK 145 (1312)
T ss_pred eeccc-chHHHHHHH
Confidence 76676 777776654
No 167
>KOG1820|consensus
Probab=90.13 E-value=13 Score=35.13 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=53.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDD-AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
++.++. +.++.+|...............+. ........+.|.+.+...|.+..||.+|..+++.++..+++.
T Consensus 376 I~e~lk-~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 376 ILEALK-GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 445555 788888877655555555444311 112456789999999999999999999999999999888766
No 168
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.09 E-value=1.8 Score=29.92 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHhcC----CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANS----DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~----~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.=.++..+...+.| .+...|..++++++.+++..++.+..+.+.|...+..++..+ ++|..|++
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~---~l~~~al~ 76 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP---ELREEALS 76 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh---hhHHHHHH
Confidence 334456666666666 366788999999999999777778888888888888887764 56766653
No 169
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.01 E-value=9.3 Score=31.14 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=89.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH----HHHHHHHHHHHh-------hcccHHHHHHHHHH
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ----NNLKSQIILLLQ-------TCDNDNIRRKICDA 115 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~----~~ik~~ll~~l~-------~~~~~~vr~~a~~~ 115 (199)
-+|..+.| .++.+|.+-+.+...++.+.-.. .|-.|.+ ..+...+..++- .+++..+-..+..+
T Consensus 123 ~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~----~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 123 PILNLLDD-YSPEIKIQGCQLLHHLLEKVPAA----EWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHHhcC-CCHHHHHHHHHHHHHHHHhCChh----hhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 46677777 69999999999999998876442 2544522 233334445553 12334444556677
Q ss_pred HHHHHHHhHhhhccCChHHHH----HHHHHHhcCC-C---HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 116 AAEVARNLIDDAGNNLWPEFL----QFLFQCANSD-N---TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 116 i~~i~~~~~~~~~~~~~~~ll----~~l~~~~~~~-~---~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
+..++.....+........+- ..+++.+... + +.++..-++.+..++..++-....|...|+.++.+.+.+|
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777766543222223333333 3345555432 4 8899999999999999988888889999999999999887
No 170
>KOG2933|consensus
Probab=89.87 E-value=10 Score=31.48 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred HHHHHHhh--cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 95 QIILLLQT--CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 95 ~ll~~l~~--~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
.++...++ .....|...||-+++.|+..+-+. .....+.++-.|..-....+.-+|+.|-++|.+.+.....
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----- 203 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----- 203 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-----
Confidence 34444442 334557777888888888766431 1123444554444444455667999999999998776543
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+.+.+..+++.. .+.+|..|+
T Consensus 204 -~~~L~~L~~~~~~~-n~r~r~~a~ 226 (334)
T KOG2933|consen 204 -QKLLRKLIPILQHS-NPRVRAKAA 226 (334)
T ss_pred -HHHHHHHHHHHhhh-chhhhhhhh
Confidence 23444555566775 777776554
No 171
>KOG4224|consensus
Probab=89.77 E-value=1.3 Score=37.57 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHh-hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|+.++. ..+..++..++..++.|+-.--. ..+...-|.++|.+.+++.+++++++-.|-.++..+...
T Consensus 213 LVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd 281 (550)
T KOG4224|consen 213 LVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD 281 (550)
T ss_pred hhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence 445555 78899999999999888753321 112244578999999999999999998888888887754
No 172
>KOG2229|consensus
Probab=89.53 E-value=15 Score=32.70 Aligned_cols=127 Identities=16% Similarity=0.265 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEF 135 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~l 135 (199)
.+.+|.+++.+.-.|-... --.-.+|++- ++.++. ..+...|..+..-|..-+...-....+... ..+
T Consensus 33 p~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~l-----ff~l~~-~~dk~lRkllythiv~~Ikn~n~~~kn~klnksl 101 (616)
T KOG2229|consen 33 PPELREKIVKALILLRNKN-----LIVAEDLLEL-----FFPLLR-CGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSL 101 (616)
T ss_pred CHHHHHHHHHHHHHHhccC-----cCCHHHHHHH-----HHHHHh-cCchhHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 4566666666554443221 1112345542 444555 677788877655444444433222222333 357
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
-.+++.++.++++. +|-.++..+++..-..+=.-...+--+...|+.. ++.|.+.++.|
T Consensus 102 q~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~--~~ki~vs~l~F 160 (616)
T KOG2229|consen 102 QAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSK--VPKILVSGLRF 160 (616)
T ss_pred HHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhcc--CcHHHHhhhHH
Confidence 77888888888775 4555556666665555311122333333446554 78999998887
No 173
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.26 E-value=9.5 Score=30.19 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhHh
Q psy15255 130 NLWPEFLQFLFQCA-NSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 130 ~~~~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i~e~ 164 (199)
++|+++++.+.+++ ++.++.++..|++++..+++.
T Consensus 117 ~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 117 DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 39999999999999 788889999999999999954
No 174
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.19 E-value=14 Score=31.94 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.++.-...-+.-+..+++.+++. +......+...+..|+.++ +.+|.-.|+.|
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~ 320 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYF 320 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGG
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34555567777788888877654 5667778888899999998 99999988865
No 175
>KOG0414|consensus
Probab=89.14 E-value=8.4 Score=37.36 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-c---cCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDA-G---NNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~---~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
++.++. ..+...|....++++.+......+. + .+. -.+++..|.+-+.|-++-+|.-+++++..+++.-...+
T Consensus 317 lv~lld-~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~- 394 (1251)
T KOG0414|consen 317 LVDLLD-SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPL- 394 (1251)
T ss_pred HHHhcC-CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCc-
Confidence 556666 6777889888888887766655311 1 122 24599999999999999999999999999998754322
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.....+.......++|. +.=||..|++
T Consensus 395 ~~~~eV~~la~grl~Dk-SslVRk~Ai~ 421 (1251)
T KOG0414|consen 395 GSRTEVLELAIGRLEDK-SSLVRKNAIQ 421 (1251)
T ss_pred cHHHHHHHHHhcccccc-cHHHHHHHHH
Confidence 34567777778889997 8889998864
No 176
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.85 E-value=6.1 Score=27.42 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHh
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQC 183 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~ 183 (199)
.-|.++...+..+.+. .. ++....+|.+..++++. .+..|..|+++-..+...++++ +.+..+.+...+...
T Consensus 30 ~ek~~~i~ai~~lI~~-~g----~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 30 NEKKRALRSIGFLIKL-MG----KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 3467777888777763 22 34555555555555543 6679999999999999888765 666667666555543
No 177
>KOG1525|consensus
Probab=88.58 E-value=13 Score=36.79 Aligned_cols=85 Identities=13% Similarity=-0.049 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC
Q psy15255 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN 188 (199)
Q Consensus 109 r~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~ 188 (199)
+...-++|.++-...+. -.-.++|.|-.-+.+.+..+|..|...+|.+.......+..-.+.+...+..-+.|-
T Consensus 239 ~~~~he~i~~L~~~~p~-----ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~- 312 (1266)
T KOG1525|consen 239 KIKYHELILELWRIAPQ-----LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDI- 312 (1266)
T ss_pred hhHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccC-
Confidence 33334555554433322 345567777777888899999999999999987766655322344555555566886
Q ss_pred CHHHhhhhhcC
Q psy15255 189 PYSVQALQLKF 199 (199)
Q Consensus 189 ~~~Vr~~A~~f 199 (199)
+++||.+++++
T Consensus 313 ~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 313 SVEVRMECVES 323 (1266)
T ss_pred ChhhhhhHHHH
Confidence 88999988763
No 178
>KOG0413|consensus
Probab=88.12 E-value=2 Score=40.76 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQ 178 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~ 178 (199)
-++-.+...+|+...-+++.++.... .-.+-++|.+..++.|+++-||..++-.+..+...- +..+...|.-
T Consensus 976 eLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~ 1047 (1529)
T KOG0413|consen 976 ELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFI 1047 (1529)
T ss_pred HHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHH
Confidence 44445556678776555565554432 134567888999999999999999999998887653 3334455544
Q ss_pred HHHHhhCCCCCHHHhhhh
Q psy15255 179 MLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 179 ~l~~~l~d~~~~~Vr~~A 196 (199)
-|...+-|. +++||--|
T Consensus 1048 Rf~l~l~D~-~edIr~~a 1064 (1529)
T KOG0413|consen 1048 RFMLALLDA-NEDIRNDA 1064 (1529)
T ss_pred HHHHHHccc-CHHHHHHH
Confidence 444455665 78888544
No 179
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=88.11 E-value=3.3 Score=27.45 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=47.8
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+++.-+...+. .++.++|+..++++..+++..++.+..==..+..++..+..|+ ++++-..|+
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-~e~lv~~af 80 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-DESLVRLAF 80 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-CccHHHHHH
Confidence 45555556544 5689999999999999999988888655668888888888886 666655544
No 180
>KOG2759|consensus
Probab=87.94 E-value=1.1 Score=38.40 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHH------HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHH
Q psy15255 81 NNLWPEFLQNNLKS------QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKE 152 (199)
Q Consensus 81 ~~~WpeLl~~~ik~------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~ 152 (199)
.+=|.|=..-+-++ .|+++++.+.+|.+---||.-|++..++.+. |..-... -.+.++.+++++|+.||.
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--gk~vv~k~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--GKAVVEKYGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--HhHHHHHhchHHHHHHHhcCCCchHHH
Confidence 45566654433332 4777888667788877889999999988765 2222221 246778999999999999
Q ss_pred HHHHHHHhhhH
Q psy15255 153 SALRLFTSVPE 163 (199)
Q Consensus 153 ~a~~~l~~i~e 163 (199)
.|+.++..++-
T Consensus 428 ~ALlavQ~lm~ 438 (442)
T KOG2759|consen 428 HALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 181
>KOG2149|consensus
Probab=87.89 E-value=12 Score=31.96 Aligned_cols=119 Identities=10% Similarity=0.186 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
...++.-+++ .+..||..+-.-+=.+.+...+. -...--++++ .+..++. +.+..||....+.+-.++....
T Consensus 60 lkeLl~qlkH-hNakvRkdal~glkd~l~s~p~~-l~~~~~~ll~-----~~~~~i~-D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 60 LKELLSQLKH-HNAKVRKDALNGLKDLLKSHPAE-LQSHLYALLQ-----KLRELIL-DDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHHhhhcC-chHhhhHHHHHHHHHHHHhChHH-HHHHHHHHHH-----Hhhhhhc-CccccHHHHHHHHHHHHHhhcc
Confidence 3345566666 66777776655555555332110 0001111111 1223333 7788888765555544333333
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST 171 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~ 171 (199)
+.......+-+++-++.++.+-.+.+|+-++..+.-+++.+++.+..
T Consensus 132 ~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 132 KEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred hhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 21124566778999999999999999999999999999998877543
No 182
>KOG4535|consensus
Probab=87.44 E-value=1.9 Score=37.93 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh-hhccCChHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPE 134 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~-~~~~~~~~~ 134 (199)
.-.||..+|.++|.|.++.--.-.++.| |.+.++ |..++....+-.||.+|+.+++.-+..+.. +...-.|..
T Consensus 543 ~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~-----L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~ 617 (728)
T KOG4535|consen 543 AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA-----LTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNA 617 (728)
T ss_pred ccccchHHHHHHHHhhcCccccccCCCchHHHHHH-----HHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHH
Confidence 4589999999999999987544457889 556776 555666677888998887776654433211 111235666
Q ss_pred HHHHHHH
Q psy15255 135 FLQFLFQ 141 (199)
Q Consensus 135 ll~~l~~ 141 (199)
++..|..
T Consensus 618 lv~aLi~ 624 (728)
T KOG4535|consen 618 LVTALQK 624 (728)
T ss_pred HHHHHHH
Confidence 6666544
No 183
>KOG1059|consensus
Probab=87.44 E-value=4 Score=37.56 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=50.9
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.++.++. ++-+-+|.+|.-.+..++-..++ ..-.-+|-|..-+.|+||.|..+|+.+++.++.--++.
T Consensus 148 Dv~tLL~-sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 148 DVFTLLN-SSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHh-cCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3777787 77888999988888777765554 22233566667788999999999999998888765554
No 184
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=87.26 E-value=3.6 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCC
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d 186 (199)
.+.+.++..+..++.+=++.||..|+..+.-++++.++. ...+-..+++-+...+..
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 477889999999999999999999999999999999988 455555555555555554
No 185
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=87.18 E-value=1.4 Score=24.01 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.++.|.++++++++.++..++.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3555666667889999999999998875
No 186
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.95 E-value=4.4 Score=28.12 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANSDN----TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~----~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.=.+++.+...+.|.+ ..-|..++++++.+.+..++.+..+.+.|...+..++..+ +.|..|++
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~---eL~~~al~ 76 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP---ELRSLALR 76 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 44456667777776654 3458899999999999888778888888888888888754 47777653
No 187
>KOG2259|consensus
Probab=86.63 E-value=1.6 Score=39.55 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=64.9
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++.++. +.-..||..|...++.++..-++ .-..-+.+|..+++|+...||.-|..++..|...+. ....
T Consensus 378 ~VhGlE-DEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~ee 446 (823)
T KOG2259|consen 378 LVHGLE-DEFYEVRRAAVASLCSLATSSPG-----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREE 446 (823)
T ss_pred eeeech-HHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHH
Confidence 555666 66678999999999888764332 334578899999999999999999999988876531 1233
Q ss_pred HHHHHHHhhCCCCCHHHhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.++.+..++.|. +++||.+.
T Consensus 447 ql~~il~~L~D~-s~dvRe~l 466 (823)
T KOG2259|consen 447 QLRQILESLEDR-SVDVREAL 466 (823)
T ss_pred HHHHHHHHHHhc-CHHHHHHH
Confidence 445556678886 88888664
No 188
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.56 E-value=18 Score=30.20 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=58.6
Q ss_pred HhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH-----hhhhhhHHHHH
Q psy15255 100 LQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE-----IFGNQESTYLV 174 (199)
Q Consensus 100 l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e-----~~~~~l~~~~~ 174 (199)
+..|.+.......+.+++.-+..+ ....-+.++..+.+++++..+.+|..-+..++.++. .......++.+
T Consensus 31 ~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (339)
T PF12074_consen 31 LSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLP 106 (339)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 333788887777777766555443 123447799999999999988899999999999875 22222355666
Q ss_pred HHHHHHHHhhCCC
Q psy15255 175 VIKQMLQQCLLPP 187 (199)
Q Consensus 175 ~l~~~l~~~l~d~ 187 (199)
.+...+....+.|
T Consensus 107 ~L~~~~~~~~~~p 119 (339)
T PF12074_consen 107 KLLQSLKEASANP 119 (339)
T ss_pred HHHHHHHHHHhCC
Confidence 7777776666665
No 189
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=86.38 E-value=20 Score=33.09 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
.+.-|..++..++.++..-++. .... ..|++.|++|+. |.+..+-.+|+.++..++..++..+.+|+..|..++.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~--l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~ 158 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPW--LYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFG 158 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCch--HHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 4566777777777777643320 0111 257888888886 7799999999999999999999889999999988886
Q ss_pred Hhh
Q psy15255 182 QCL 184 (199)
Q Consensus 182 ~~l 184 (199)
..+
T Consensus 159 Rl~ 161 (668)
T PF04388_consen 159 RLL 161 (668)
T ss_pred HHH
Confidence 665
No 190
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=86.34 E-value=2.4 Score=35.72 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=81.2
Q ss_pred HhhHHHHH-----HHHHHHHhcCCc--hhHHHHHHHHHHHHHHhhcCcC-CCCChHHH---HHHHHHHHHHHHHhhcccH
Q psy15255 38 VNDQNNLK-----SQIILLLQTCDN--DNIRRKICDAAAEVARNLIDDA-GNNLWPEF---LQNNLKSQIILLLQTCDND 106 (199)
Q Consensus 38 ~~~~~~ik-----~~ll~~L~~e~~--~~vR~~~~~~ia~la~~~l~~~-~~~~WpeL---l~~~ik~~ll~~l~~~~~~ 106 (199)
+..|.++. .-+|..|.+... +++|+ + .-.++++.... ..-.|..+ +|. |.+++- ..++
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn-~----TWtLSNlcRGknP~P~w~~isqalpi-----L~KLiy-s~D~ 257 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRN-A----TWTLSNLCRGKNPPPDWSNISQALPI-----LAKLIY-SRDP 257 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHH-h----HHHHHHhhCCCCCCCchHHHHHHHHH-----HHHHHh-hcCH
Confidence 44555543 346666665322 34454 2 22333333211 13456555 554 444555 5667
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhh
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCL 184 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l 184 (199)
.+-.-||=.+..+...-.+.. ..-.+ .+.+-|..++.+++..++.-|++.++.|+.--+.+-.-.++ ..+..|...+
T Consensus 258 evlvDA~WAiSYlsDg~~E~i-~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 258 EVLVDACWAISYLSDGPNEKI-QAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL 336 (526)
T ss_pred HHHHHHHHHHHHhccCcHHHH-HHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHh
Confidence 777677777766543211100 00000 12234677788899999999999999998765544222122 3344555567
Q ss_pred CCCCCHHHhhhhh
Q psy15255 185 LPPNPYSVQALQL 197 (199)
Q Consensus 185 ~d~~~~~Vr~~A~ 197 (199)
.++ -..+|.+||
T Consensus 337 s~~-ke~irKEaC 348 (526)
T COG5064 337 SSP-KENIRKEAC 348 (526)
T ss_pred cCh-hhhhhhhhh
Confidence 777 668999998
No 191
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.95 E-value=12 Score=30.47 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh---c--cCChHHHHHHHHHHhc--------CCC
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA---G--NNLWPEFLQFLFQCAN--------SDN 147 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~---~--~~~~~~ll~~l~~~~~--------~~~ 147 (199)
...||-++|. ++.++. +.++.+|..++.++..++....... + .+.-+-+...++.++. +++
T Consensus 114 ~~~~~liiP~-----iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 114 SQHWPLIIPP-----ILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHhhhHHHhh-----HHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 4778888887 777887 7899999999999999988665422 1 1234456667777776 456
Q ss_pred HHHHHHHHHHHHhhhHhh
Q psy15255 148 TTLKESALRLFTSVPEIF 165 (199)
Q Consensus 148 ~~vr~~a~~~l~~i~e~~ 165 (199)
..+=..|.-++..++...
T Consensus 188 ~~Ll~~ay~~L~~L~~~~ 205 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQ 205 (282)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667778888888886653
No 192
>KOG1525|consensus
Probab=85.95 E-value=6.4 Score=38.76 Aligned_cols=143 Identities=10% Similarity=0.144 Sum_probs=86.2
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC---cCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---DAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKI 112 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~---~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a 112 (199)
..++....+-..|..-|.+ ++..+|.++-.++|.+...--. ......|.+.+. -+. +.+..||+..
T Consensus 252 ~~p~ll~~vip~l~~eL~s-e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~---------r~~-D~~~~vR~~~ 320 (1266)
T KOG1525|consen 252 IAPQLLLAVIPQLEFELLS-EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLG---------RFN-DISVEVRMEC 320 (1266)
T ss_pred hhHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHH---------Hhc-cCChhhhhhH
Confidence 4566667777778888888 7889999999999998865422 223445555443 233 7889999999
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHH
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~V 192 (199)
.+++..+.-.-++ .-...-..+.-...|.|+.+|.....+++.+ +...-.+ .+.+.++..+..-+.|. -..|
T Consensus 321 v~~~~~~l~~~~~-----~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~-~v~~~~l-~~~~~ll~~~~eR~rDK-k~~V 392 (1266)
T KOG1525|consen 321 VESIKQCLLNNPS-----IAKASTILLALRERDLDEDVRVRTQVVIVAC-DVMKFKL-VYIPLLLKLVAERLRDK-KIKV 392 (1266)
T ss_pred HHHhHHHHhcCch-----hhhHHHHHHHHHhhcCChhhhheeeEEEEEe-ehhHhhh-hhhHHHHHHHHHHHhhh-hHHH
Confidence 8888876643211 1122222222233456776665444433332 2111112 22233777777778887 7888
Q ss_pred hhhhh
Q psy15255 193 QALQL 197 (199)
Q Consensus 193 r~~A~ 197 (199)
|..|+
T Consensus 393 R~~Am 397 (1266)
T KOG1525|consen 393 RKQAM 397 (1266)
T ss_pred HHHHH
Confidence 88876
No 193
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=85.72 E-value=1.6 Score=37.84 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=48.9
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.|...+..+.++.+---||.-+++++...+. |...... ....++++++++|+.||..|+.++.+++
T Consensus 357 ~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 357 ILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3666776455666666788999999987753 2222222 4667899999999999999999999875
No 194
>KOG2259|consensus
Probab=85.72 E-value=6.7 Score=35.83 Aligned_cols=74 Identities=8% Similarity=0.111 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH-h----hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 90 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI-D----DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 90 ~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~-~----~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
..+.+...+.+. +...+||..|.+.+...+...+ + ....+..+..+..+...+.|-++.||.-|.++||.+-..
T Consensus 233 ~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 233 KACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 334444556666 8889999999999887776542 1 112255677888899999999999999999999987543
No 195
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.24 E-value=8.3 Score=28.52 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHH-Hhhhh
Q psy15255 133 PEFLQFLFQCAN--SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYS-VQALQ 196 (199)
Q Consensus 133 ~~ll~~l~~~~~--~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~-Vr~~A 196 (199)
+.+++.+...++ ..+..+..+++++++.-|..-..- ......-.+.+....+.++|.. ||..|
T Consensus 85 eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A 150 (157)
T PF11701_consen 85 EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLA 150 (157)
T ss_dssp TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHH
T ss_pred hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHH
Confidence 456777777787 678899999999999987543211 0112344556666765433555 67655
No 196
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=85.22 E-value=16 Score=33.96 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 152 ESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+.++.++..+++.......-....+++++..+++.+ +.++...++.|
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~f 313 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTF 313 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence 477888888888765443333467788888999886 88888877665
No 197
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.65 E-value=20 Score=30.50 Aligned_cols=139 Identities=10% Similarity=0.059 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHHHhhcCc-CCCCC--
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRR--KICDAAAEVARNLIDD-AGNNL-- 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~--~~~~~ia~la~~~l~~-~~~~~-- 83 (199)
.....|..|.-+||.+.+..... +.+ .-...-+.+++...+.++..-|. .+-.+++.|+...... .|...
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~----v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQ----VTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHH----HHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 33567888888888887543111 111 21223333444333334444443 3445555555444221 12111
Q ss_pred ----hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 84 ----WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 84 ----WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
-.++..+.|..+|. -..+..|-+|-.|++.+..+-..+. ...+.+++|.+.+++++++.-|+..|..++
T Consensus 298 ~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 298 ELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 12223333322232 1123456678888888887666543 358899999999999999999998776653
No 198
>KOG2081|consensus
Probab=84.27 E-value=30 Score=31.03 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHH---HHhcCCchhHHHHHHHHHHHHHHhh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIIL---LLQTCDNDNIRRKICDAAAEVARNL 75 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~---~L~~e~~~~vR~~~~~~ia~la~~~ 75 (199)
.+...--+|+--+|+.+..+ +..+++.+-...|..++. .+.+.++ .+|.+++=.+|.++-..
T Consensus 29 ~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~ 93 (559)
T KOG2081|consen 29 CDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHPD-VIRTQLAVAVAALALHM 93 (559)
T ss_pred chHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHh
Confidence 45667778899999999988 888888777777764433 3334344 88999999999988554
No 199
>KOG1061|consensus
Probab=83.54 E-value=8.3 Score=35.55 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=75.6
Q ss_pred hhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHH
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKI 112 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a 112 (199)
|.+..|+.--..-+.++.-..+ +++++|.-+-++.+.+- -.+.|.-+.. -+..++. +.++-+|..+
T Consensus 76 Ya~~~P~~a~~avnt~~kD~~d-~np~iR~lAlrtm~~l~-------v~~i~ey~~~-----Pl~~~l~-d~~~yvRkta 141 (734)
T KOG1061|consen 76 YAKGKPDLAILAVNTFLKDCED-PNPLIRALALRTMGCLR-------VDKITEYLCD-----PLLKCLK-DDDPYVRKTA 141 (734)
T ss_pred hhccCchHHHhhhhhhhccCCC-CCHHHHHHHhhceeeEe-------ehHHHHHHHH-----HHHHhcc-CCChhHHHHH
Confidence 3444444444445556666666 78888876555544331 1233333322 2556777 8889999998
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
..+++.+...-.+ ..+=..++..|..++.|++|.|--.|+.++..|.+.-.
T Consensus 142 a~~vakl~~~~~~---~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 142 AVCVAKLFDIDPD---LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhhcCChh---hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 8887765543222 12334578888888889999999999999999998765
No 200
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=83.53 E-value=4.5 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
..++++...+..++.++++.++..|++|+...
T Consensus 13 ~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 13 YRSDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998774
No 201
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=83.52 E-value=2.9 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q psy15255 38 VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 72 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la 72 (199)
+.+.+|+|+.+++.|.+ +++..|.++..+++.++
T Consensus 2 ~~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLES-REPSEREQLLPVIATLL 35 (46)
T ss_dssp -HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Confidence 34678999999999999 56888888777777665
No 202
>KOG1837|consensus
Probab=82.95 E-value=7.3 Score=38.80 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 132 WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 132 ~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
|+.+..-+++...+.++..|..|+..+..+.+.+++....+.+.+++.+...+.|. +.+|-.++
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~-~~~Ve~~~ 1602 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE-DDEVECLC 1602 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh-HHHHHHHH
Confidence 99999888888889999999999999999999999888888999999999999996 77776543
No 203
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=82.80 E-value=6.4 Score=35.41 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=51.8
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
..+..++...+|...++-++.++...++.. ....-|.+-..+.-.+.|.+|-+...|+++|+.|+|.-
T Consensus 486 ~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 486 SLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 344446667788888888888877665422 22456788777777889999999999999999999864
No 204
>KOG2022|consensus
Probab=82.68 E-value=45 Score=31.71 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l 184 (199)
+++.-..+.+.++.++..+.+ ..-+.+.-+|.+++++.++... +.+...+..+|+....++.+|.+.+...+...+
T Consensus 522 n~ql~~Tss~~igs~s~~l~e--~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l 597 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGE--HPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCYEVL 597 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhc--CCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHh
Confidence 556666777888887776654 1356788899999999644332 234444888999998889898888888877665
Q ss_pred CC
Q psy15255 185 LP 186 (199)
Q Consensus 185 ~d 186 (199)
..
T Consensus 598 ~~ 599 (982)
T KOG2022|consen 598 NK 599 (982)
T ss_pred cc
Confidence 54
No 205
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.68 E-value=36 Score=30.56 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHhcCC----CHHHHHHHHHHHHhhhH
Q psy15255 130 NLWPEFLQFLFQCANSD----NTTLKESALRLFTSVPE 163 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~----~~~vr~~a~~~l~~i~e 163 (199)
..-++++..++.++.++ ++.+|.+|+-+++.++.
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~ 426 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVR 426 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 45688999999998864 66789999999998875
No 206
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=82.43 E-value=3.6 Score=27.65 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 145 SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 145 ~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
+.+|.+|+.|...++.++..+++.-..-...|...+...+.|+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~ 59 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDP 59 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Confidence 4588999999999999998887654445567888888888886
No 207
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.01 E-value=4.7 Score=30.74 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+++-+.+++.+++..+|..|++.+..+... .+.+. ...++.+.....|| ++.+|..|.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~q---GLvnP-~~cvp~lIAL~ts~-~~~ir~~A~ 66 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQ---GLVNP-KQCVPTLIALETSP-NPSIRSRAY 66 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhc---CCCCh-HHHHhHhhhhhCCC-ChHHHHHHH
Confidence 344455567789999999999999987753 23222 33445566677787 999998875
No 208
>KOG1058|consensus
Probab=81.45 E-value=47 Score=31.13 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=57.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-------CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-------NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
++..+. .++-+||.++.+.+..++. .....+++.+|.+-+..+ +.+.|..-.+.+.+++-.++
T Consensus 322 vLrvLs-s~dldvr~Ktldi~ldLvs-------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-- 391 (948)
T KOG1058|consen 322 VLRVLS-SPDLDVRSKTLDIALDLVS-------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-- 391 (948)
T ss_pred HHHHcC-cccccHHHHHHHHHHhhhh-------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--
Confidence 455565 7888999999888887664 356677777776655422 34567777777666655443
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.+...+++.+...+.|. ++.-...
T Consensus 392 --~~aatvV~~ll~fisD~-N~~aas~ 415 (948)
T KOG1058|consen 392 --EVAATVVSLLLDFISDS-NEAAASD 415 (948)
T ss_pred --HHHHHHHHHHHHHhccC-CHHHHHH
Confidence 35567777777788886 5544433
No 209
>KOG4535|consensus
Probab=81.39 E-value=8.5 Score=34.03 Aligned_cols=140 Identities=9% Similarity=0.023 Sum_probs=76.1
Q ss_pred cCHhhHHHHH-HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 36 LAVNDQNNLK-SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 36 l~~~~~~~ik-~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
+....|+.+- ..+-.+|.+ ..|.+|...+..+|+++...+.. ....+...+.|+.++.+
T Consensus 447 ln~r~KaawtlgnITdAL~~-~~Ps~~s~~eR~sg~ll~~~~~~-------------------A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 447 LNVRAKAAWSLGNITDALIV-NMPTPDSFQERFSGLLLLKMLRS-------------------AIEASADKDKVKSNAVR 506 (728)
T ss_pred HhHHHHHHHHhhhhHHHHHc-CCCCchHHHHHHHHHHHHHHHHH-------------------HHHhhhhhhhhhhHHHH
Confidence 3334444332 234445555 77778888888888776554221 11112345678888888
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHH----HHhc-CCCHHHHHHHHHHHHhhhHhhhhhh--HHHHHHHHHHHHHhhCCC
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLF----QCAN-SDNTTLKESALRLFTSVPEIFGNQE--STYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~----~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l--~~~~~~l~~~l~~~l~d~ 187 (199)
.+..+...+-+. ......++.+.-. .+.. .....||=.||.+++++...-.-.+ .+....+.+.+.....+.
T Consensus 507 aLgnllQvlq~i-~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 507 ALGNLLQFLQPI-EKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred HHhhHHHHHHHh-hhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 777665433210 0111222222222 2221 2356799999999999986533222 244555666665555553
Q ss_pred CCHHHhhhh
Q psy15255 188 NPYSVQALQ 196 (199)
Q Consensus 188 ~~~~Vr~~A 196 (199)
.+-+||..|
T Consensus 586 ~NFKVRi~A 594 (728)
T KOG4535|consen 586 KNFKVRIRA 594 (728)
T ss_pred ccceEeehh
Confidence 477788765
No 210
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=81.31 E-value=10 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEI 164 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~ 164 (199)
+++-.+|..|++++..|+....+ ....--|.+...+.+.+.|+ +.....+|+..+..+-..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~-~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSS-SYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999998886543 11344577888888888876 667889999999887443
No 211
>KOG1943|consensus
Probab=80.68 E-value=58 Score=31.65 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ 89 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~ 89 (199)
|..+|-.||=-+.+.. .++|.+--+++-...+..+.-.+++..=|..|-+.|++|+.=+.- ...-++++|
T Consensus 354 dt~VrWSaAKg~grvt--------~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl--ps~l~dVvp 423 (1133)
T KOG1943|consen 354 DTVVRWSAAKGLGRVT--------SRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL--PSLLEDVVP 423 (1133)
T ss_pred cchhhHHHHHHHHHHH--------ccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc--hHHHHHHHH
Confidence 3455666655555554 345566666666677775555456788899999999999653221 122335667
Q ss_pred HHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHhhhH
Q psy15255 90 NNLKSQIILLL--QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQC-ANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 90 ~~ik~~ll~~l--~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++|.--..-- +.....+||-.||.++-.+++..-++...+....|.+.+... +-|++...|++|..||-..+.
T Consensus 424 lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 424 LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 64443211111 123456799999999888887654332233334455444443 358899999999988876653
No 212
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.46 E-value=18 Score=25.79 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH------HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES------TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~------~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-.+.+..|-+-++++++.++..|+.++-.++...++.+. .|.+.+..++... .. .+++|+..+++
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~-~~~~Vk~kil~ 105 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PK-YDPKVREKALE 105 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CC-CCHHHHHHHHH
Confidence 4456788889999999999999999999999988776542 3444444444322 12 37788866553
No 213
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.31 E-value=35 Score=31.82 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC-CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~-~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
.++.+.|.+ ++-.+|-.+-.+.|.+.......+. .+.+|+=+..++- .+.+-++ +..|-+|.+|.++...|..- .
T Consensus 302 ~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~-ll~ERl~-D~~py~RtKalqv~~kifdl-~ 377 (1128)
T COG5098 302 EHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVG-LLVERLS-DTYPYTRTKALQVLEKIFDL-N 377 (1128)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHH-HHHHHhh-ccchHHHHHHHHHHHHHHhC-c
Confidence 345666666 6677787666666666555443210 1223332222110 1222334 78899999998888776642 2
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
. -..+...++......+++|.+..||..|.+.++++.-
T Consensus 378 s-k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 378 S-KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred c-cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 1 1246678899999999999999999999999999874
No 214
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=79.90 E-value=25 Score=36.18 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=55.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHH-HHHHH---hcC------------------C------CHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ-FLFQC---ANS------------------D------NTTLKESA 154 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~-~l~~~---~~~------------------~------~~~vr~~a 154 (199)
++...||.+|++++..++......+....|..++. +||-+ ++. . .| ..++.
T Consensus 1358 D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W-l~eT~ 1436 (1780)
T PLN03076 1358 DPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW-LYETC 1436 (1780)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH-HHHHH
Confidence 67889999999999999876554333356755433 22222 221 0 11 24555
Q ss_pred HHHHHhhhHhhh---hhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 155 LRLFTSVPEIFG---NQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 155 ~~~l~~i~e~~~---~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
..++..+++.+. +.+.+.++.++..+..|+..+ +..+.
T Consensus 1437 ~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~-n~~la 1477 (1780)
T PLN03076 1437 TLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRP-HQSLA 1477 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHH
Confidence 555555555444 445667888888889998876 55544
No 215
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.04 E-value=8.3 Score=31.80 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=45.9
Q ss_pred HHHhhc-ccHHHHHHHHHHHHHHHHHhHh------hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 98 LLLQTC-DNDNIRRKICDAAAEVARNLID------DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 98 ~~l~~~-~~~~vr~~a~~~i~~i~~~~~~------~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
.++... +++.+...++..+.+++...+. ......-+.....+++.+..+|+.++..|+.+++.++...+....
T Consensus 62 ~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~ 141 (312)
T PF03224_consen 62 NLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE 141 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 344433 5667777777777776654431 000011112444556677888999999999999999887655432
Q ss_pred ----HHHHHHHHHHHHhhC
Q psy15255 171 ----TYLVVIKQMLQQCLL 185 (199)
Q Consensus 171 ----~~~~~l~~~l~~~l~ 185 (199)
.....+..++...++
T Consensus 142 ~~~~~~l~~ll~~L~~~l~ 160 (312)
T PF03224_consen 142 KLVKEALPKLLQWLSSQLS 160 (312)
T ss_dssp HHHHHHHHHHHHHHH-TT-
T ss_pred chHHHHHHHHHHHHHHhhc
Confidence 234444444444333
No 216
>KOG1078|consensus
Probab=78.81 E-value=57 Score=30.62 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
+..+...+-=.+..+|-+|..++.+|. ..+. .....|+..+..|+.|+ |.+||=.|
T Consensus 468 ir~iyNRviLEn~ivRaaAv~alaKfg--~~~~--~l~~sI~vllkRc~~D~-DdevRdrA 523 (865)
T KOG1078|consen 468 IRFIYNRVILENAIVRAAAVSALAKFG--AQDV--VLLPSILVLLKRCLNDS-DDEVRDRA 523 (865)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCC--CccccHHHHHHHHhcCc-hHHHHHHH
Confidence 333344333345678889999999987 2222 12356777888899997 88888544
No 217
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=78.52 E-value=2.1 Score=29.33 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 168 QESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 168 ~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+.+|.+.+..++..+|.+= +++||..|++|
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi-~~~Ir~dsl~~ 34 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHI-SPDIREDSLKF 34 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhC-CHHHHHhHHHH
Confidence 46789999999999999997 89999999876
No 218
>KOG1848|consensus
Probab=77.24 E-value=35 Score=34.04 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=69.7
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcc------------cHHHHHHHHHHHHHHHHHh
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCD------------NDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~------------~~~vr~~a~~~i~~i~~~~ 123 (199)
+-..||+.++++.=.+....-..-+.+.|......+| +.++...+ .++.....+-++..|++.+
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi----~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf 1084 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVI----MPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLF 1084 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHH----HHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHH
Confidence 5678999999888888766654445688988754322 23333111 1222234556667766655
Q ss_pred Hhhh--------ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 124 IDDA--------GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 124 ~~~~--------~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.+.+ ....|.++++++..+..+.++.+..+|++++..+.
T Consensus 1085 ~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1085 SENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 4421 12679999999999999999999999999888765
No 219
>KOG1517|consensus
Probab=77.16 E-value=8.7 Score=37.02 Aligned_cols=89 Identities=17% Similarity=0.052 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhC
Q psy15255 108 IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLL 185 (199)
Q Consensus 108 vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~ 185 (199)
-|.-++-+++.|...+.-.-..-.-..|+...+..++|+ .|-.|.=.+-+++.+-+.++.. ...-.+.-...+...+.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 344455666666654321000112256888888888885 7999999999999999887654 34444566777788889
Q ss_pred CCCCHHHhhhhh
Q psy15255 186 PPNPYSVQALQL 197 (199)
Q Consensus 186 d~~~~~Vr~~A~ 197 (199)
|+ -++||.+|+
T Consensus 653 D~-vpEVRaAAV 663 (1387)
T KOG1517|consen 653 DP-VPEVRAAAV 663 (1387)
T ss_pred Cc-cHHHHHHHH
Confidence 98 999999986
No 220
>KOG1293|consensus
Probab=77.10 E-value=34 Score=31.26 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhHh-hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLID-DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQ 181 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~ 181 (199)
.+...+..+|.+.-.+...+-. ..+ ..-.....-+.+.+.+|+..+..+++.+++.++-.+++.-..|+ +..+..+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 4556777777777655543321 112 33345666667777899999999999999999876654322332 35556666
Q ss_pred HhhCCCCCHHHhhhhh
Q psy15255 182 QCLLPPNPYSVQALQL 197 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~A~ 197 (199)
..+.++ |..+|..++
T Consensus 468 s~~~~~-~~n~r~~~~ 482 (678)
T KOG1293|consen 468 SMLTDP-DFNSRANSL 482 (678)
T ss_pred HHhcCC-CchHHHHHH
Confidence 666777 788886654
No 221
>PF14961 BROMI: Broad-minded protein
Probab=76.94 E-value=13 Score=36.27 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=54.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE 169 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l 169 (199)
++.-+....-..||..|++.++.+-.... .-...|+.|...|..++.|+|+.+.+.+++...+.....+-.+
T Consensus 166 i~d~ld~~~P~evR~eAlq~Lc~~p~SDV--ls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 166 IADKLDPGQPKEVRLEALQILCSAPPSDV--LSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHhcCCCCchHHHHHHHHHHhcCChhhc--cccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 44444445567799999998875422111 1247999999999999999999999999999999887665444
No 222
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=76.33 E-value=69 Score=30.12 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
...|...++..+++ +.--.|..+|..++.+ ...++. ++.-.++... ...+++ +++-.|+-.|+..+-.+.
T Consensus 458 e~fiv~hv~P~f~s-~ygfL~Srace~is~~-eeDfkd--~~ill~aye~-----t~ncl~-nn~lpv~ieAalAlq~fi 527 (970)
T COG5656 458 EYFIVNHVIPAFRS-NYGFLKSRACEFISTI-EEDFKD--NGILLEAYEN-----THNCLK-NNHLPVMIEAALALQFFI 527 (970)
T ss_pred HHHHHHHhhHhhcC-cccchHHHHHHHHHHH-HHhccc--chHHHHHHHH-----HHHHHh-cCCcchhhhHHHHHHHHH
Confidence 34667777788888 8888899999999998 433332 3333333332 445777 566677777666665554
Q ss_pred HHhHh-hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHH
Q psy15255 121 RNLID-DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQ 178 (199)
Q Consensus 121 ~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~ 178 (199)
..... .....|.|..++.+..+.++=+.++-...|+ .+++++++++.||...+..
T Consensus 528 ~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe---~fVe~fseELspfa~eLa~ 583 (970)
T COG5656 528 FNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME---SFVEYFSEELSPFAPELAG 583 (970)
T ss_pred hchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH---HHHHHhHHhhchhHHHHHH
Confidence 43321 1234688888888888776555554544444 4556677777666544433
No 223
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=75.74 E-value=26 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE 169 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l 169 (199)
....+++..|.+-+++.++.|+.-+++++-.+++.-+..+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 4567899999999999999999999999999998766554
No 224
>KOG1822|consensus
Probab=75.56 E-value=1.1e+02 Score=31.93 Aligned_cols=160 Identities=12% Similarity=0.095 Sum_probs=95.7
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCch---hHHHHHHH--HHHHHHHhhcCcCCCCChHHHHHHHHHHH----HHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDND---NIRRKICD--AAAEVARNLIDDAGNNLWPEFLQNNLKSQ----IILLL 100 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~~---~vR~~~~~--~ia~la~~~l~~~~~~~WpeLl~~~ik~~----ll~~l 100 (199)
..+++.+++-.+..+-..+...+...... .|+-++-. .+--..+.+-...+.. -+.|.-++.. ++..+
T Consensus 809 g~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~---~lg~e~v~~~~~~l~~~sl 885 (2067)
T KOG1822|consen 809 GSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGAT---SLGPEEVRSSALTLIVNSL 885 (2067)
T ss_pred HHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccccc---ccCHHHHHHHHHHHHhhhh
Confidence 45566777777777777777777763222 22222222 3333344433221110 1222222221 22223
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHH
Q psy15255 101 QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQE-STYLVVIKQ 178 (199)
Q Consensus 101 ~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~ 178 (199)
. .+++..|-.+++.++.++-...+ .....++.+.+|.-+.+. |+--|..-..+++.+-.+.+.-- .+|.+.=+.
T Consensus 886 ~-~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~ 961 (2067)
T KOG1822|consen 886 I-NPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVS 961 (2067)
T ss_pred c-cCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHH
Confidence 3 67788888888888887754432 244577888888888765 66667777777888777766543 456777667
Q ss_pred HHHHhhCCCCCHHHhhhh
Q psy15255 179 MLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 179 ~l~~~l~d~~~~~Vr~~A 196 (199)
++....+|+++|.|+.=+
T Consensus 962 illal~~Ds~~p~VqtwS 979 (2067)
T KOG1822|consen 962 ILLALATDSTSPVVQTWS 979 (2067)
T ss_pred HHHHHhhcCCCchhhhhH
Confidence 777888998777888544
No 225
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=75.51 E-value=23 Score=31.42 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.+...|..+.+++|.++...+.-+....+. +..+...+.++ +++||..
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~l-i~~LF~sL~~~-~~evr~s 433 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSL-IEFLFDSLEDE-SPEVRVS 433 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHH-HHHHHHHhhCc-chHHHHH
Confidence 477899999999999998776554333344 44444455665 8888864
No 226
>KOG2137|consensus
Probab=75.25 E-value=62 Score=29.96 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH-HHhhCCCCCHHHhhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML-QQCLLPPNPYSVQALQ 196 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l-~~~l~d~~~~~Vr~~A 196 (199)
.-..++|+|..+..+.+..+++.+++.+..+.+.++-.... ..|++.+ .-+++.. +..|+..+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt-~~~vkvn~ 449 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTT-NLYVKVNV 449 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhccc-chHHHHHH
Confidence 34568888888888888888888888888888887643211 2233322 2345554 66666543
No 227
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=75.09 E-value=73 Score=29.77 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhcCcCCCCChHHHHHHH-HHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHH
Q psy15255 63 KICDAAAEVARNLIDDAGNNLWPEFLQNN-LKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLF 140 (199)
Q Consensus 63 ~~~~~ia~la~~~l~~~~~~~WpeLl~~~-ik~~ll~~l~-~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~ 140 (199)
..+.++|.|+...++ +-.|.++++.+ +=.-+...+. ....+++...++-.++.++...-... .-.-..+++.|.
T Consensus 507 ~~vE~LGiLaNL~~~---~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li 582 (708)
T PF05804_consen 507 FVVECLGILANLTIP---DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLI 582 (708)
T ss_pred HHHHHHHHHHhcccC---CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHH
Confidence 445555555554443 45788875420 0001222332 11234455554444554443111000 000123455555
Q ss_pred HHhcCC--CHHHHHHHHHHHHhhhHhh--hhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 141 QCANSD--NTTLKESALRLFTSVPEIF--GNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 141 ~~~~~~--~~~vr~~a~~~l~~i~e~~--~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.++.+. |-..-.-.+.+|..++-.- .+.+.. ...++.++...++|. +++||..|
T Consensus 583 ~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~-~~~~~~ylidL~~d~-N~~ir~~~ 640 (708)
T PF05804_consen 583 ELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK-ETEIPAYLIDLMHDK-NAEIRKVC 640 (708)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh-ccchHHHHHHHhcCC-CHHHHHHH
Confidence 555432 3333333444444444221 111211 256899999999998 99999754
No 228
>KOG2549|consensus
Probab=74.97 E-value=63 Score=29.03 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=80.7
Q ss_pred ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH---
Q psy15255 35 KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK--- 111 (199)
Q Consensus 35 ~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~--- 111 (199)
.|+.|.+-|.+...--+++ .++..|.++-+.+. + +..--+|+|- +..++...-..++-.+
T Consensus 200 ~LS~ElQlYy~~It~a~~g--~~~~~r~eAL~sL~--------T--DsGL~~LlPy-----Fv~fIae~vs~ni~~~nL~ 262 (576)
T KOG2549|consen 200 VLSVELQLYYKEITEACTG--SDEPLRQEALQSLE--------T--DSGLQQLLPY-----FVTFIAEGVSVNIVQNNLE 262 (576)
T ss_pred hccHHHHHHHHHHHHHHhc--CCHHHHHHHHHhhc--------c--CccHHHHHHH-----HHHHHhhheeeccccccHH
Confidence 4667777777765444444 45566665332221 1 3334455553 3334441112221111
Q ss_pred HHHHHHHHHHHhHhh---hccCChHHHHHHHHHHhcCC----------CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHH
Q psy15255 112 ICDAAAEVARNLIDD---AGNNLWPEFLQFLFQCANSD----------NTTLKESALRLFTSVPEIFGNQESTYLVVIKQ 178 (199)
Q Consensus 112 a~~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~~~----------~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~ 178 (199)
.+..+..++..+.++ +...+..+|+|.++.|+-+. .|.+|--|.+.+..+|..+++.-..-...|..
T Consensus 263 lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~ 342 (576)
T KOG2549|consen 263 LLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITR 342 (576)
T ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 224445556555542 23467889999999998542 57799999999999998887765455566777
Q ss_pred HHHHhhCCC
Q psy15255 179 MLQQCLLPP 187 (199)
Q Consensus 179 ~l~~~l~d~ 187 (199)
.+...+.|+
T Consensus 343 tl~k~l~D~ 351 (576)
T KOG2549|consen 343 TLSKALLDN 351 (576)
T ss_pred HHHHHhcCC
Confidence 777777775
No 229
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=74.60 E-value=44 Score=27.01 Aligned_cols=63 Identities=13% Similarity=-0.018 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhh
Q psy15255 132 WPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 132 ~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
-..++..+++...-+ ....|..+++++..+++...+.+...-+.++.-+.+.+....||+--.
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl 142 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLL 142 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHH
Confidence 445555665544322 456789999999999888766665444555555555555534776433
No 230
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=74.34 E-value=7.9 Score=22.50 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 72 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la 72 (199)
+.+|+|+-+++.|... +.. |.++..+++.++
T Consensus 3 n~eYLKNVll~fl~~~-e~~-r~~ll~vi~tlL 33 (46)
T smart00755 3 NFEYLKNVLLQFLTLR-ESE-RETLLKVISTVL 33 (46)
T ss_pred cHHHHHHHHHHHhccC-cch-HHHHHHHHHHHh
Confidence 4689999999999994 444 887777777665
No 231
>KOG2022|consensus
Probab=74.00 E-value=18 Score=34.27 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc--CCchhH-HHHHHHHHHHHHHhhcCcCCCCChH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT--CDNDNI-RRKICDAAAEVARNLIDDAGNNLWP 85 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~--e~~~~v-R~~~~~~ia~la~~~l~~~~~~~Wp 85 (199)
...++|=+.|+-|--.+..+ |..++++....+|.+++..+.- ...+.| ++..+..++-++..+ +..||
T Consensus 53 k~~evqyFGAltL~~ki~~~----~e~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~-----~d~Wp 123 (982)
T KOG2022|consen 53 KSSEVQYFGALTLHDKINTR----WEECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMV-----PDLWP 123 (982)
T ss_pred chhHHHHHhHHHHHHHHHhh----hccCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHc-----cccCC
Confidence 45667888888888888888 9999999999999998887754 223344 555555555555444 34798
Q ss_pred HHHHHHH
Q psy15255 86 EFLQNNL 92 (199)
Q Consensus 86 eLl~~~i 92 (199)
.-....|
T Consensus 124 ~ai~~vi 130 (982)
T KOG2022|consen 124 TAIQDVI 130 (982)
T ss_pred chHHHHH
Confidence 8766533
No 232
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.75 E-value=27 Score=25.15 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQC 183 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~ 183 (199)
.-.+.+..|.+-+.++++.+...|+.++..++...+..+ ..|++.+..++...
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 345788889999999999999999999999998877654 24555555555443
No 233
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.76 E-value=49 Score=26.77 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=48.1
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
++++-+.++..++.+.+.++..++.++.+-+|...++++..+....+-. .++...++..+...++.+
T Consensus 174 ~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 174 VSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc
Confidence 3333333334678899999999999998889999999999999876533 335555666666666654
No 234
>KOG1293|consensus
Probab=72.04 E-value=31 Score=31.56 Aligned_cols=99 Identities=9% Similarity=0.057 Sum_probs=64.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTY 172 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~ 172 (199)
+++.+. +++..|...+..+++.+...+-+. .... -...+..+.....++++.+|..++.++..++=..+.. ...+
T Consensus 424 lvqll~-dp~~~i~~~~lgai~NlVmefs~~-kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 424 LVQLLM-DPEIMIMGITLGAICNLVMEFSNL-KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHHhh-CcchhHHHHHHHHHHHHHhhcccH-HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 445554 788888887777777776544320 0001 1235667777888999999999999998886433332 2333
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...-...+.....|| |..|+-.++
T Consensus 502 ~ki~a~~i~~l~nd~-d~~Vqeq~f 525 (678)
T KOG1293|consen 502 AKIPANLILDLINDP-DWAVQEQCF 525 (678)
T ss_pred HHhhHHHHHHHHhCC-CHHHHHHHH
Confidence 344455556667787 999987765
No 235
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=71.96 E-value=54 Score=28.31 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCC-C---CCHHHhhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLP-P---NPYSVQALQL 197 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d-~---~~~~Vr~~A~ 197 (199)
.....++..+.+|+++++.+|-+.|+..+..= .+-.-+..+...+.+++...+.. . =+..||..|+
T Consensus 293 ~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~ 362 (409)
T PF01603_consen 293 KIMVPLFKRLAKCISSPHFQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQ 362 (409)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45567889999999999999999888876652 11111234455566666555433 1 1556776654
No 236
>KOG2973|consensus
Probab=71.84 E-value=20 Score=29.81 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=39.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
++.++- +++|.||..|.+.+..+... ....+.++-..+++.+++++.+.++ -+-|.++++++..
T Consensus 8 lv~ll~-~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 8 LVELLH-SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHhc-cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 444555 88999999888766554333 1111223445688889999987765 3345555555543
No 237
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=71.78 E-value=7.9 Score=32.41 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHH------HHHHHHhhcccHH-HHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHH
Q psy15255 81 NNLWPEFLQNNLKS------QIILLLQTCDNDN-IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKES 153 (199)
Q Consensus 81 ~~~WpeLl~~~ik~------~ll~~l~~~~~~~-vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~ 153 (199)
++-|.+-+.-++|. .|.+.++ ..+++ .-.-||.-+..+.+..++....-.--..-+.++.+++++|++||..
T Consensus 340 ~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~Vkfe 418 (432)
T COG5231 340 KDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFE 418 (432)
T ss_pred cCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHH
Confidence 46676666655553 4777777 44444 2234677777777766541100001124567889999999999999
Q ss_pred HHHHHHhhhHh
Q psy15255 154 ALRLFTSVPEI 164 (199)
Q Consensus 154 a~~~l~~i~e~ 164 (199)
|++++..++.+
T Consensus 419 Al~a~q~~i~~ 429 (432)
T COG5231 419 ALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHhh
Confidence 99999887754
No 238
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=71.76 E-value=6.8 Score=29.36 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
...-+.++.|+-.|+..-.+-...-.-|..+..+..++.++++.+|..++.+|+.+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345555666665554322210011234677889999999999999999999999876
No 239
>KOG2081|consensus
Probab=71.64 E-value=77 Score=28.52 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 111 KICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 111 ~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
.++.++-.++.+..+ ..+...|+++..++++= ....+|++++..+|.+.+.++.. ......++.++..+++..
T Consensus 408 AaLF~l~~~~~~~~~-~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~~ 480 (559)
T KOG2081|consen 408 AALFILRAVAKNVSP-EENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQGLQLK 480 (559)
T ss_pred HHHHHHHHHhccCCc-cccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhhc
Confidence 344444444444432 12344455555444432 23347888888888887776543 223345566666665554
No 240
>KOG1077|consensus
Probab=71.25 E-value=91 Score=29.20 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=62.0
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
.++..+..+.+-++|+++++.+..+.. ...-..++.-+.+-+.+.+..+|+--.-=++-++|.+..+..=|.+
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD-------~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd 444 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCD-------VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD 444 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhc-------hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 577777778899999999998876553 2355667777777777788889975444456667776666666778
Q ss_pred HHHHHHHHhhCCCCCHHH
Q psy15255 175 VIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~V 192 (199)
.+++.+.-+ +|-.|++|
T Consensus 445 viLqLiria-gd~vsdeV 461 (938)
T KOG1077|consen 445 VILQLIRIA-GDYVSDEV 461 (938)
T ss_pred HHHHHHHHh-cccccHHH
Confidence 887776533 34324444
No 241
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.77 E-value=23 Score=27.07 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
+.+.+.+.+.+.|+++-+|.+|+..+...... .+.+.+..++...+.|+ +.-||.+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~-~~~vq~a 174 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDE-EYYVQKA 174 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS--HHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCc-hHHHHHH
Confidence 78899999999999999999887766443322 45567777777778886 7777765
No 242
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=70.31 E-value=62 Score=26.89 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|+.++. ..+-+||....+++-...-.+.+ ......+.++..++-++.+++.++-+.++..+..+...++++ .
T Consensus 102 Lfpl~~-~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~ 173 (307)
T PF04118_consen 102 LFPLFS-YASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------Y 173 (307)
T ss_pred HHHHHH-HHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------H
Confidence 444555 45567776655554332211111 222344556666667777777888888999999988877654 2
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+.+.+-.++-. ++++|..|+.|
T Consensus 174 F~~~lwl~ii~--sp~~Rl~al~~ 195 (307)
T PF04118_consen 174 FWQCLWLCIIT--SPSRRLGALNY 195 (307)
T ss_pred HHHHHHHHHhc--CcchhHHHHHH
Confidence 33333333333 45688877754
No 243
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=70.30 E-value=41 Score=24.84 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH-hhCCCC-CHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ-CLLPPN-PYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~-~l~d~~-~~~Vr~~A~ 197 (199)
..+.+.+.+.+.++++.+=..+++++..+...+...+......+...+.. .+..+. ...-|..++
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~L 138 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELAL 138 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 56888888888877788888999999999988888787777777666655 444331 234444444
No 244
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=70.05 E-value=7.1 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 148 TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 148 ~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+|.+|+.++..+.+.....+. ...+...+..++.| +.+|+..++
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D--~~DIk~L~~ 86 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD--EHDIKMLCH 86 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC--cHHHHHHHH
Confidence 47999999999999997766653 35557778889988 678887654
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=69.83 E-value=40 Score=24.50 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.--+-+..+-+-++++++.+...|+.++..++...+..+ ..+.+.+..++.. .. +++|+..++
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~-~~~Vk~kil 106 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TK-NEEVRQKIL 106 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cC-CHHHHHHHH
Confidence 344678888888999999999999999999998877653 2455555554433 33 778876544
No 246
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.34 E-value=41 Score=24.51 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH--HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY--LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~--~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-.+.+..|.+-++++++.+...|+.++..++...++.+... ...++..+...+.++.+++|+...+
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil 102 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLR 102 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHH
Confidence 345678888888999999999999999999998888764211 1233333444444423777776543
No 247
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=67.13 E-value=87 Score=27.37 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH-----HHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL-----KSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i-----k~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
......++++|.+.....+..-+-..++++++.. ...++-+..... -..++.++. .++.-+.+.++.++
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-----~~~~~~f~~~~~~~~~~~~~fl~lL~-~~d~~i~~~a~~iL 125 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-----DTRVKLFHDDALLKKKTWEPFFNLLN-RQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-----hHHHHHHHHHhhccccchHHHHHHHc-CCchhHHHHHHHHH
Confidence 5666778888888888888888888888888663 111111111100 011344555 56777888888888
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhH
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPE 163 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e 163 (199)
+.++..-.........+.+++.+.+.+.++ +...+..|++++..++.
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~ 173 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR 173 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC
Confidence 877753221111122334555666666554 45667778888877753
No 248
>PF05536 Neurochondrin: Neurochondrin
Probab=67.10 E-value=97 Score=27.92 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-h---
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-E--- 169 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l--- 169 (199)
+++.+...+...+..-+.+++..|+..- + |.... ..-++.+++.+.+ .+...+.|+.++..++...+.+ +
T Consensus 103 Lle~l~~~s~~~~v~dalqcL~~Ias~~-~--G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~ 178 (543)
T PF05536_consen 103 LLEILSSSSDLETVDDALQCLLAIASSP-E--GAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAED 178 (543)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHcCc-H--hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhh
Confidence 5566663333366667778888777432 1 11111 1234555555544 5566888888888888766533 2
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 170 STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 170 ~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
......+.+.+...+... ...-+.++|+
T Consensus 179 ~~~l~~il~~La~~fs~~-~~~~kfell~ 206 (543)
T PF05536_consen 179 SQLLHSILPSLARDFSSF-HGEDKFELLE 206 (543)
T ss_pred HHHHHHHHHHHHHHHHhh-ccchHHHHHH
Confidence 123344555555444443 3344555554
No 249
>KOG2759|consensus
Probab=66.50 E-value=28 Score=30.17 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=59.3
Q ss_pred Hhhhh----ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 30 IEIYS----KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 30 ~~~~~----~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
+.+|. .+. +..-.|-..|++.|....+|.+--.+|.=||+..|..-. +=.-+-+.-.|+.++.++. .++
T Consensus 350 e~FW~eNa~rln-ennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-----gk~vv~k~ggKe~vM~Lln-h~d 422 (442)
T KOG2759|consen 350 EKFWRENADRLN-ENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-----GKAVVEKYGGKERVMNLLN-HED 422 (442)
T ss_pred cchHHHhHHHHh-hccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-----HhHHHHHhchHHHHHHHhc-CCC
Confidence 56773 333 344456667899999988899999999999999876411 1111123334777888998 999
Q ss_pred HHHHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVA 120 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~ 120 (199)
+.||..|..++-.+.
T Consensus 423 ~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 423 PEVRYHALLAVQKLM 437 (442)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999888776654
No 250
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=65.43 E-value=53 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHH-HhcCC--CHHHHHHHHHHHHhhhHh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQ-CANSD--NTTLKESALRLFTSVPEI 164 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~-~~~~~--~~~vr~~a~~~l~~i~e~ 164 (199)
+++.+. ++++.+-..++.++..+....-. ....+...+++.++. .+.++ +...|+.+++++..++..
T Consensus 78 Ll~~~~-~~~~~i~~~slri~~~l~~~~~~-~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 78 LLKNLS-SSDFPIFSRSLRIFLTLLSRFRS-HLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHh-hhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 333444 34477777788888887766543 344566777887777 55543 356899999999998863
No 251
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=64.21 E-value=73 Score=25.49 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=91.5
Q ss_pred hccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--HHHHHHHHHHHHHhhc-ccH--HH
Q psy15255 34 SKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--LQNNLKSQIILLLQTC-DND--NI 108 (199)
Q Consensus 34 ~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--l~~~ik~~ll~~l~~~-~~~--~v 108 (199)
..++.++-..+-..++..|..-...-+=.++......+.+.+.. ..+|++ +|.---..++..+..+ ... ..
T Consensus 87 ~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~----~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iT 162 (255)
T PF10350_consen 87 SLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWS----SNNPELSELPEEWLDELLEAIESKGQQKLSIT 162 (255)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHHHHHHhcccccccccc
Confidence 34677777888888888888866777767777777778777764 223443 2222223355666634 221 35
Q ss_pred HHHHHH--HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH--------HHHHHHHHHHHhhhHh--hhhhhHHHHHHH
Q psy15255 109 RRKICD--AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT--------TLKESALRLFTSVPEI--FGNQESTYLVVI 176 (199)
Q Consensus 109 r~~a~~--~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~--------~vr~~a~~~l~~i~e~--~~~~l~~~~~~l 176 (199)
|++|+- ++..|+...+... ....+..+..|++.+..+.. .-|..|+.++-.+... +.+...+|....
T Consensus 163 RRSAGLP~~i~aiL~ae~~~~-~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~ 241 (255)
T PF10350_consen 163 RRSAGLPFLILAILSAEPSNS-RPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDA 241 (255)
T ss_pred cccCcHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 665432 4444444333211 13456677777777776532 4688999999888754 445566777777
Q ss_pred HHHHHHhhCCC
Q psy15255 177 KQMLQQCLLPP 187 (199)
Q Consensus 177 ~~~l~~~l~d~ 187 (199)
+.+-..++.++
T Consensus 242 l~lai~~f~s~ 252 (255)
T PF10350_consen 242 LILAIKGFSSP 252 (255)
T ss_pred HHHHHHhCCCc
Confidence 77667777765
No 252
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.61 E-value=1.1e+02 Score=27.52 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHhcCC----CHHHHHHHHHHHHhhhHh
Q psy15255 130 NLWPEFLQFLFQCANSD----NTTLKESALRLFTSVPEI 164 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~----~~~vr~~a~~~l~~i~e~ 164 (199)
..-++++..++.++.++ ++.++.+|+-+++.++..
T Consensus 427 ~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 427 RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp ---HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 45577888888888753 677999999999988743
No 253
>KOG0929|consensus
Probab=63.42 E-value=52 Score=33.26 Aligned_cols=88 Identities=15% Similarity=0.228 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC----C------HH--HHHHHHHHHHhhhHhhhhhhH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD----N------TT--LKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~----~------~~--vr~~a~~~l~~i~e~~~~~l~ 170 (199)
.....+|.+++++...+.....+++...-|..++..+|-....- + |. .-..|+++++.+...+.+.+.
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~ 1264 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLN 1264 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999988777665677888877776655421 1 21 114566666666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCCHH
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYS 191 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~ 191 (199)
..++.+...+..|...+ +..
T Consensus 1265 ~lL~~~~~ll~~ci~~~-n~~ 1284 (1514)
T KOG0929|consen 1265 NLLPKVLGLLVGCIKQD-NQQ 1284 (1514)
T ss_pred HHHHHHHHHHHHHhcCc-chh
Confidence 66777777788887775 444
No 254
>KOG1851|consensus
Probab=62.06 E-value=81 Score=32.08 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhhh-hhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 129 NNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGN-QESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 129 ~~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~-~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...-++++..+.+...+ .+|.+|.++++-+...+-.-.- ......+.|-..+...+.|. +.+||..|.
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~-~i~vre~Aa 1590 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD-QIEVREEAA 1590 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch-HHHHHHHHH
Confidence 34568888888865555 4899999988877766532111 12456678888888888996 888998875
No 255
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=60.81 E-value=1.2e+02 Score=26.69 Aligned_cols=148 Identities=10% Similarity=0.086 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHH-HhhcCcCCCCChHHHHHHHHHHHHHHHHhhc-----cc---HHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVA-RNLIDDAGNNLWPEFLQNNLKSQIILLLQTC-----DN---DNIRRKIC 113 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la-~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~-----~~---~~vr~~a~ 113 (199)
.+-..+..+++. +++.|-..+-..+-.++ +.....-....|..++..+.+ ++.-+... .+ +.++....
T Consensus 301 ~vl~sl~~al~~-~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (464)
T PF11864_consen 301 SVLPSLLNALKS-NSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEE--IFDKIQPFDSWYSNSSSLDQLSSNLH 377 (464)
T ss_pred HHHHHHHHHHhC-CCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHH--HHhhccccccccccccchHHHHHHHH
Confidence 578888888887 66666666555555555 333222235789988654221 11111100 01 23333322
Q ss_pred HHHHHHHHHhHhh-hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh-CCCCCHH
Q psy15255 114 DAAAEVARNLIDD-AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL-LPPNPYS 191 (199)
Q Consensus 114 ~~i~~i~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l-~d~~~~~ 191 (199)
+.+.. +..+.+. ...++-+.++.++.+....-++......+..=...+.-.. ....+.+..++.... .+. +++
T Consensus 378 ~l~~~-ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~---~~W~~n~~~ll~~F~~~~~-~~~ 452 (464)
T PF11864_consen 378 SLLSS-IESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSN---PDWLDNLQKLLDRFYNRDR-RSE 452 (464)
T ss_pred HHHHH-HHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCC---hHHHHHHHHHHHHHhCCCC-Cch
Confidence 33332 3333332 2335677888888887765444322222211111111111 234455555555555 444 888
Q ss_pred Hhhhhhc
Q psy15255 192 VQALQLK 198 (199)
Q Consensus 192 Vr~~A~~ 198 (199)
||..|++
T Consensus 453 vRi~aL~ 459 (464)
T PF11864_consen 453 VRIKALD 459 (464)
T ss_pred HHHHHHH
Confidence 9998874
No 256
>KOG3036|consensus
Probab=59.10 E-value=42 Score=27.14 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=47.3
Q ss_pred hccCChHH-HHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHH--HHHHHHHHHHhhCCCCCHHHhh
Q psy15255 127 AGNNLWPE-FLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQESTY--LVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 127 ~~~~~~~~-ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~--~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
+...++|- |.|++.....+ +....|.+++.+++.++..-+++...| ...|++.+...|..+ ++.-+.
T Consensus 116 FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKt 186 (293)
T KOG3036|consen 116 FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKT 186 (293)
T ss_pred HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHH
Confidence 34467775 67777776655 477899999999999998766665444 357788887777776 444333
No 257
>KOG0946|consensus
Probab=57.88 E-value=80 Score=29.87 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHH---HHHHHHhhCCCCCHHHhhhh
Q psy15255 132 WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVI---KQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 132 ~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l---~~~l~~~l~d~~~~~Vr~~A 196 (199)
-++.+..+.+.+..-|-.||..|++.|.+++.-.+.++..-+-.. +.-+...+.|+ .+-||-+|
T Consensus 120 ~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~ 186 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEA 186 (970)
T ss_pred CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhH
Confidence 356777888888777888899999998888877766543322111 22234455554 44455444
No 258
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=57.70 E-value=1.1e+02 Score=25.42 Aligned_cols=135 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhHhhhccCChHHHH
Q psy15255 58 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK-ICDAAAEVARNLIDDAGNNLWPEFL 136 (199)
Q Consensus 58 ~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~-a~~~i~~i~~~~~~~~~~~~~~~ll 136 (199)
+.||+.+=..+...+++.-+. ...+..++|-++...+.---+ ..|..|.. +..+++.|...+.+ ...+..|.++
T Consensus 41 r~iKkeIL~Li~t~i~~~~~~--~~v~~~~i~~l~~~vL~DY~~--~~p~~r~~evL~l~~~ii~kl~~-~~~~~v~~I~ 115 (319)
T PF08767_consen 41 RTIKKEILKLIETFISKAEDP--EEVANNFIPPLLDAVLGDYQN--SVPDAREPEVLSLMATIINKLGE-LIQPQVPQIL 115 (319)
T ss_dssp HHHHHHHHHHHHHHHHT-S-H--HHHHHHTHHHHHHHHHHHHHH--S-GGGS-HHHHHHHHHHHHHHGG-GCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHhc--CCccccChhHHHHHHHHHHHHHH-hhhhhHHHHH
Q ss_pred HHHHHHhcC-------CCHHHHHHHHHHHHhhhHhhhhhh----HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 137 QFLFQCANS-------DNTTLKESALRLFTSVPEIFGNQE----STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 137 ~~l~~~~~~-------~~~~vr~~a~~~l~~i~e~~~~~l----~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++.+.-+ .-|.+|..=+..+..+.+...+.+ .+....++..+.-+++++ +.+|...+++
T Consensus 116 ~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~ 187 (319)
T PF08767_consen 116 EAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLN 187 (319)
T ss_dssp HHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHH
No 259
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=57.22 E-value=1.6e+02 Score=27.10 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 130 NLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
..|..++.+|...+.+ +.-..+.+++.+++.++++.++.=+..+..+..++-.
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIED 461 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIED 461 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhh
Confidence 4667777777776654 3556677777777777777654323333444444433
No 260
>KOG4646|consensus
Probab=56.87 E-value=17 Score=26.66 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH-----HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP-----EFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~-----~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|+.-++..++...+.. +.+.++..-.+ .-.|. +.+..+..++..++....+.++..++.+|-.
T Consensus 21 LV~efq~tt~~eakeq---v~ANLANFAYD---P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d 88 (173)
T KOG4646|consen 21 LVDEFQTTTNIEAKEQ---VTANLANFAYD---PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD 88 (173)
T ss_pred HHHHHHHhccHHHHHH---HHHHHHhhccC---cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC
Confidence 3344554455555443 44555543333 23454 3567889999999999999999999988854
No 261
>KOG4524|consensus
Probab=56.36 E-value=65 Score=30.95 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHh--hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLID--DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQM 179 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~ 179 (199)
+++-.+|-++++++.....-+.. +.+-+......|.+..++.+.++-+-.-|++++..+.+..++-+ ..+...+.|-
T Consensus 814 ~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~ 893 (1014)
T KOG4524|consen 814 HESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPW 893 (1014)
T ss_pred chhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77888899999988765544332 11112222333445566777888888899999999998887764 3455555554
Q ss_pred HHHhhCC
Q psy15255 180 LQQCLLP 186 (199)
Q Consensus 180 l~~~l~d 186 (199)
+.+.++|
T Consensus 894 l~~~~~~ 900 (1014)
T KOG4524|consen 894 LKHLCQD 900 (1014)
T ss_pred HHHHHHH
Confidence 4444443
No 262
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.46 E-value=1.1e+02 Score=24.75 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=41.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
++.++. ...+.+|....+++..+..... .....-++++..+.+.++.+-+ .-|++++-.++...
T Consensus 193 Ll~lL~-n~~~w~~~~~L~iL~~ll~~~d--~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 193 LLGLLE-NGPPWLRRKTLQILKVLLPHVD--MRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHHHhcccc--CCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhc
Confidence 444554 5667888888888877776542 2234667888888888877644 34566665555443
No 263
>KOG3961|consensus
Probab=54.95 E-value=68 Score=25.41 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=59.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh---hhhhhHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI---FGNQESTY 172 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~---~~~~l~~~ 172 (199)
++.++. +.+...|.-|-+-+..++....+ ....-.|.|+.-+-..+..-|-++...+++++..+.-. ++..+.||
T Consensus 119 F~dGL~-e~~hpyrf~A~~Gi~DLLl~~g~-kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPf 196 (262)
T KOG3961|consen 119 FFDGLA-ETDHPYRFVARQGITDLLLAGGE-KILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPF 196 (262)
T ss_pred Hhhhhh-hcCCCcchhhhhcHHHHHHhccc-ccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhH
Confidence 444555 66655666555555555443322 12357799999999999988999999999999888744 45668888
Q ss_pred HHHHHHHHHHh
Q psy15255 173 LVVIKQMLQQC 183 (199)
Q Consensus 173 ~~~l~~~l~~~ 183 (199)
...+++++...
T Consensus 197 YRQlLp~~n~~ 207 (262)
T KOG3961|consen 197 YRQLLPVLNTF 207 (262)
T ss_pred HHHhhhhhhhh
Confidence 88888887644
No 264
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=54.73 E-value=76 Score=22.63 Aligned_cols=67 Identities=18% Similarity=0.088 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH--HHHHHHHHHHhhCCCCC-HHHhhhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY--LVVIKQMLQQCLLPPNP-YSVQALQL 197 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~--~~~l~~~l~~~l~d~~~-~~Vr~~A~ 197 (199)
.--+.+..+-+-++++++.+...|+.++..++...++.+... ...++..+...+.++.+ +.|+..++
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil 103 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRIL 103 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345678888999999999999999999999998877664211 12334444444444323 33765543
No 265
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=54.53 E-value=1.1e+02 Score=24.25 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhHhhhccCChH-HHHHHHHHHhcCCCHHHHHHHH
Q psy15255 80 GNNLWPEFLQNNLKSQIILLLQTCDN---DNIRRKICDAAAEVARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESAL 155 (199)
Q Consensus 80 ~~~~WpeLl~~~ik~~ll~~l~~~~~---~~vr~~a~~~i~~i~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~vr~~a~ 155 (199)
.+..|-+|+|. ++..+...+. ......+.+.-..+...+.. ..|| ..+..+.+++.|=+.. ++.--
T Consensus 62 ~~~~~ldLlP~-----~Ls~L~~~~~i~~~~~~~sG~eyK~~iI~~lc~----~~W~~~~l~~l~~mfrd~~Ls-~~e~~ 131 (223)
T PF14675_consen 62 KNGKWLDLLPK-----CLSALSASESINYNGGELSGEEYKKQIINSLCS----SRWPPQILIQLASMFRDVPLS-KEELE 131 (223)
T ss_dssp S-STTTTHHHH-----HHHHHHT-S--SSSS----HHHHHHHHHHHHHH----S---TTTHHHHHHHGGGS----HHHHH
T ss_pred ccchHHHHHHH-----HHHHHhcCcccccccccccchHHHHHHHHHHHh----CcCcHHHHHHHHHHHhcCCCC-HHHHH
Confidence 36889999997 4455542211 01111222233333333332 5786 4777778888774322 22233
Q ss_pred HHHHhhhHhhh
Q psy15255 156 RLFTSVPEIFG 166 (199)
Q Consensus 156 ~~l~~i~e~~~ 166 (199)
.++.+++..+.
T Consensus 132 ~vv~Kv~~~l~ 142 (223)
T PF14675_consen 132 FVVEKVLSMLK 142 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 45555555543
No 266
>KOG4500|consensus
Probab=54.25 E-value=54 Score=28.84 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 132 WPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 132 ~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
-|.++..+..++.+.|.....++.-+++.|+..
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~ 345 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARR 345 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence 367999999999999999999999999999865
No 267
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=53.49 E-value=48 Score=28.97 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhc--cCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAG--NNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~--~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
..+|.--|...++++.+.+...+... ... -+.|+|.+...++..-.+.--.++++++.+.|..+
T Consensus 83 PsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 83 PSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp ---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred CCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678889999999999887653111 112 35688888888887655667788999999998876
No 268
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=52.47 E-value=98 Score=23.27 Aligned_cols=47 Identities=30% Similarity=0.340 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCch
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDND 58 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~ 58 (199)
....|+++++++-..+..|.. +.-++++.+..++..++.-+..|.+.
T Consensus 12 ~vf~RSFsaL~la~il~~d~~--~~fL~~~~~~~~~~~~~~Yl~~E~D~ 58 (175)
T PF10978_consen 12 AVFTRSFSALLLALILYADRN--YPFLSQEERQELIDQLIRYLLLEKDT 58 (175)
T ss_pred ceeeehHHHHHHHHHHhcCCc--ccCCCHHHHHHHHHHHHHHHHHcccc
Confidence 577999999999999987633 77899999999999999999986543
No 269
>KOG4413|consensus
Probab=51.68 E-value=65 Score=27.34 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhh----ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDA----GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.++- .++.+|+..+|..++-|....-.+. ..-.-.++++.+..++-..|..|-.+|.+.+..+.
T Consensus 89 rGLi-addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 89 RGLI-ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hccc-CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4454 7888999999998887765331100 01123578999999999888889989888887775
No 270
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=50.73 E-value=1.3e+02 Score=24.24 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHH
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQ 181 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~ 181 (199)
.-|..+|.+++-+.++++.++.-+++.+..+++.++.. +.+|...|-..+.
T Consensus 205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999988766 6788887766553
No 271
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=50.25 E-value=1.1e+02 Score=28.17 Aligned_cols=81 Identities=5% Similarity=0.111 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHH-HHHHHh---hcccHHHHHHHHHHHHHHHHHhHhh-hccCChHHHHHHHHHHhc-CCCHHHHHHHH
Q psy15255 82 NLWPEFLQNNLKSQ-IILLLQ---TCDNDNIRRKICDAAAEVARNLIDD-AGNNLWPEFLQFLFQCAN-SDNTTLKESAL 155 (199)
Q Consensus 82 ~~WpeLl~~~ik~~-ll~~l~---~~~~~~vr~~a~~~i~~i~~~~~~~-~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~ 155 (199)
..|-.++|.++... .+.-.+ ++.+.+||.....++-.+....+.. +......-+...+...+. |.|- ||..+.
T Consensus 300 ~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~si 378 (740)
T COG5537 300 RDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSI 378 (740)
T ss_pred HHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHH
Confidence 45777777766443 222111 4778889998888887777665431 111233445566666664 4565 999999
Q ss_pred HHHHhhhH
Q psy15255 156 RLFTSVPE 163 (199)
Q Consensus 156 ~~l~~i~e 163 (199)
+.+.++.+
T Consensus 379 k~l~~lr~ 386 (740)
T COG5537 379 KSLCYLRI 386 (740)
T ss_pred HHHHHHHH
Confidence 98888654
No 272
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.24 E-value=20 Score=30.09 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHHHhhhHhhhhh---hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 134 EFLQFLFQCANSDNTT-LKESALRLFTSVPEIFGNQ---ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~-vr~~a~~~l~~i~e~~~~~---l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+++..++..++...+. .-..||.=++.+++..++. +.. -...+.+.+.+.++ |++|+.+|++
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K--yg~k~~im~L~nh~-d~~VkfeAl~ 421 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK--YGVKEIIMNLINHD-DDDVKFEALQ 421 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH--hhhHHHHHHHhcCC-CchhhHHHHH
Confidence 4788888888866443 2335666666666665543 222 24556678888898 9999999874
No 273
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=49.87 E-value=41 Score=21.61 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
++-++.++.|.-+..|..|+++++.|+....
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 5666777888999999999999999987653
No 274
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=49.68 E-value=49 Score=21.19 Aligned_cols=51 Identities=8% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHhhhccCC--hHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHh
Q psy15255 111 KICDAAAEVARNLIDDAGNNL--WPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 111 ~a~~~i~~i~~~~~~~~~~~~--~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~ 164 (199)
.+.=++++|++.... ... -.++++.+.+.+. ++...+|=+++.+++-+...
T Consensus 6 aaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 6 AALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 344566666654322 122 2368999999997 56889999999999998754
No 275
>KOG0413|consensus
Probab=49.10 E-value=2.7e+02 Score=27.40 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE 169 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l 169 (199)
+.+. ++++-||+.+...++.++... --.|.. ++.++.. +-|.++++|.-|=..|+.+...-.+.+
T Consensus 1013 ~~L~-Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P~~ 1079 (1529)
T KOG0413|consen 1013 ASLC-DPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEPNF 1079 (1529)
T ss_pred HHhc-CchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCccc
Confidence 3444 899999998777776666432 346753 4444444 457899999999999999987765554
No 276
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=49.01 E-value=1.4e+02 Score=25.05 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC------CHHHHHHHHHHHHhhhHhhhhhhHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD------NTTLKESALRLFTSVPEIFGNQESTYLVVI 176 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l 176 (199)
+.+...|..|.+++- + .....+|+|-+.+.+.++ +..+-.+.+....++...-.--+.||...+
T Consensus 209 Es~~~~r~aAl~sLr-------~---dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 209 ESDEQTRDAALESLR-------N---DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHhc-------c---CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 666677766555542 1 234555666666555432 222333344444443332111136776666
Q ss_pred HHHHHHhh
Q psy15255 177 KQMLQQCL 184 (199)
Q Consensus 177 ~~~l~~~l 184 (199)
++-+..|+
T Consensus 279 mPSilTcl 286 (450)
T COG5095 279 MPSILTCL 286 (450)
T ss_pred HHHHHHHH
Confidence 55555553
No 277
>KOG2137|consensus
Probab=47.51 E-value=2.4e+02 Score=26.31 Aligned_cols=113 Identities=15% Similarity=0.256 Sum_probs=63.4
Q ss_pred hhhccC-HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHH-----HHhhccc
Q psy15255 32 IYSKLA-VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIIL-----LLQTCDN 105 (199)
Q Consensus 32 ~~~~l~-~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~-----~l~~~~~ 105 (199)
+..+++ ++.++.|--.|...+.+ .+..+-..+-..++.++..+ | . ..+|+.++. ++. +++
T Consensus 377 L~~Kt~~e~~~~~IlplL~~S~~~-~~~~iQ~~~L~~lptv~e~i-D--~---------~~vk~~ilP~l~~l~~~-tt~ 442 (700)
T KOG2137|consen 377 LKEKTPPEEVKEKILPLLYRSLED-SDVQIQELALQILPTVAESI-D--V---------PFVKQAILPRLKNLAFK-TTN 442 (700)
T ss_pred HHhhCChHHHHHHHHHHHHHHhcC-cchhhHHHHHHhhhHHHHhc-c--H---------HHHHHHHHHHhhcchhc-ccc
Confidence 345554 34555666666666666 55555555555555555433 1 1 122332222 233 677
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
..++..++.|++.++..+ +. ..-.++++ .++++.+..+|.+-..-+++...++
T Consensus 443 ~~vkvn~L~c~~~l~q~l-D~--~~v~d~~l-pi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRL-DK--AAVLDELL-PILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred hHHHHHHHHHHHHHHHHH-HH--HHhHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 788888888888877433 21 12344544 5577787778877766666655554
No 278
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=47.32 E-value=93 Score=21.51 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhh
Q psy15255 131 LWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 131 ~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~ 165 (199)
..+.++|.+..++. +..++.|.++..+++.++...
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~ 38 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV 38 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc
Confidence 56789999999998 678899999999999887654
No 279
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=47.02 E-value=36 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
-++.+.+-+.|+++.|...|++++...|+.-
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 4677888899999999999999999988654
No 280
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=46.81 E-value=3.4e+02 Score=27.83 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=46.4
Q ss_pred hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH
Q psy15255 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180 (199)
Q Consensus 102 ~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l 180 (199)
.++++.++.-++.....++..+ + ...-.+++..|.+-+.+++..--.+|+.++..+++..++.+.+|...|..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~f-d---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEF-D---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhc-c---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4778888877666555544432 1 1234678888877776665555578999999998876666666655444443
No 281
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.49 E-value=1.1e+02 Score=25.74 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD---NTTLKESALRLFTSVPEIFGNQESTYLVVIKQM 179 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~ 179 (199)
.++...|..|++.+.. +.....-.|.++.++.+.+... +...-...++++.+++..-.=.+.+|...+++.
T Consensus 189 ~~~~~~r~~aL~sL~t------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~ 262 (343)
T cd08050 189 GSNEEKRREALQSLRT------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPS 262 (343)
T ss_pred CCCHHHHHHHHHHhcc------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHH
Confidence 3455556555444321 1112233344444444444311 233444555555555543222367888888888
Q ss_pred HHHhhC
Q psy15255 180 LQQCLL 185 (199)
Q Consensus 180 l~~~l~ 185 (199)
+..|+-
T Consensus 263 vltclv 268 (343)
T cd08050 263 VLTCLV 268 (343)
T ss_pred HHHHhh
Confidence 887873
No 282
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=1.6e+02 Score=26.98 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
.++.|.+..++.||-..|-+.|.-... .|.+.=-+++..++ .++++-||..|+-.++.|..+.-+ .
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag----~G~~~a~diL~~L~---------~D~~dfVRQ~AmIa~~mIl~Q~n~-~ 655 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAG----TGDKVATDILEALM---------YDTNDFVRQSAMIAVGMILMQCNP-E 655 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcC----CccHHHHHHHHHHh---------hCcHHHHHHHHHHHHHHHHhhcCc-c
Confidence 467778878999998777666665533 23333344444333 288888999988888777665433 3
Q ss_pred ccCChHHHHHHHHHHhcCC
Q psy15255 128 GNNLWPEFLQFLFQCANSD 146 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~ 146 (199)
++.+...+..-+.+.+.+.
T Consensus 656 Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred cChhHHHHHHHHHHHHhhh
Confidence 4455566666666666543
No 283
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=46.23 E-value=73 Score=23.69 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
..++|.+..++++........|+..+..+...+.+.+.
T Consensus 68 ~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 68 VDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999998877665543
No 284
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=45.37 E-value=1.3e+02 Score=26.24 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHH-HHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHh
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ-FLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQC 183 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~-~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~ 183 (199)
-..|-.+...++.++.++.+ ..+..++. .|..++++++...|..|..++...+......- .+....+...+..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~----~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE----SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 34566788899988887743 46666666 68999999999999999999998887654331 11124445555555
Q ss_pred hCC
Q psy15255 184 LLP 186 (199)
Q Consensus 184 l~d 186 (199)
+.+
T Consensus 177 L~~ 179 (441)
T PF12054_consen 177 LEN 179 (441)
T ss_pred HcC
Confidence 553
No 285
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.88 E-value=1.9e+02 Score=24.33 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHhh---hccCChHHHHHHHHHHhc------CCC----HHHHHHHHHHHHhhhHhhhhh
Q psy15255 113 CDAAAEVARNLIDD---AGNNLWPEFLQFLFQCAN------SDN----TTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 113 ~~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~------~~~----~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+.++.++...+.++ +..++..+|+|.++.|+- +++ -.+|..|...+..++..++..
T Consensus 253 LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 253 LTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 34555555555542 233567778888877763 222 237888888888888777654
No 286
>KOG0889|consensus
Probab=43.81 E-value=4.4e+02 Score=29.68 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhh--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVND--QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE 86 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~--~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe 86 (199)
.+...+++---|+|.......+..|..+-|=- --.+-+.|+.+...+.-+.+=...|.++.+-+..++|- -|-
T Consensus 647 eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvELclTvPvRLS~Llpy-----lp~ 721 (3550)
T KOG0889|consen 647 EPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVELCLTLPVRLSSLLPY-----LPL 721 (3550)
T ss_pred cchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHhhhHHHHHhhhh-----hhh
Confidence 44566666555555555544444444332211 11222333333333333555577777787777777652 122
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc----cCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhh
Q psy15255 87 FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG----NNLWPEFLQFLFQCANSD-NTTLKESALRLFTSV 161 (199)
Q Consensus 87 Ll~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~----~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i 161 (199)
|..- +..++. .++.+...++.++--+...+.++++ .+.|+++++.|...++.. +..+-..|++++|++
T Consensus 722 LM~P-----Lv~aLk--gs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKl 794 (3550)
T KOG0889|consen 722 LMKP-----LVFALK--GSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKL 794 (3550)
T ss_pred hhhH-----HHHHhc--CCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhh
Confidence 2211 444554 6677777777777766666655433 367899999999999874 566778899999998
Q ss_pred hH
Q psy15255 162 PE 163 (199)
Q Consensus 162 ~e 163 (199)
-.
T Consensus 795 gG 796 (3550)
T KOG0889|consen 795 GG 796 (3550)
T ss_pred cC
Confidence 54
No 287
>KOG1848|consensus
Probab=43.57 E-value=2.1e+02 Score=29.01 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHH-HHHHHHHHhcCC------CH-------HHHHHHHHHHHhhhHhhhhh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPE-FLQFLFQCANSD------NT-------TLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~-ll~~l~~~~~~~------~~-------~vr~~a~~~l~~i~e~~~~~ 168 (199)
+.-..||+.|+++...|...-....+...|.. +...++-++... +| +--++.+-.++.|+..++++
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 34478999999999988764432223355765 344444444411 11 12367788888888877766
Q ss_pred hH------HH---HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ES------TY---LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~------~~---~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+. .+ -..+.+++....-+. ++++..+|++
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~-s~e~slsai~ 1125 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDI-SPEISLSAIK 1125 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcC-ChHhHHHHHH
Confidence 32 22 335666777666675 8888887763
No 288
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=43.12 E-value=82 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=28.2
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRK 63 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~ 63 (199)
..+|..++++.|+.+-..+...|+..+++.|+..
T Consensus 14 ~~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r 47 (68)
T PF06628_consen 14 RDLYRVLSDEERERLVENIAGHLSGVSDEEIQER 47 (68)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHccCChhhHHHH
Confidence 5679999999999999999999998666656664
No 289
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.11 E-value=2.3e+02 Score=24.80 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCC
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~ 187 (199)
++...++..+.+++++...+ ..|+..+..+.+.++.+ +.+|...|...+.+-++.+
T Consensus 198 ~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 198 NQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 67889999999999876432 56999999999999876 7899999999888888764
No 290
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=42.62 E-value=1e+02 Score=23.22 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 91 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 91 ~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-+|+.+.+.+..+..|+|+..+...++.++....
T Consensus 76 ~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~ 109 (180)
T PHA02855 76 DIKSQIIESLNNDNRPSVKLAIISLISMIAEKKG 109 (180)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 4677888888768999999998888887776553
No 291
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=42.33 E-value=1.3e+02 Score=24.47 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=39.1
Q ss_pred ccCChHH-HHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHH--HHHHHHHHHhhCCCCCHHHhh
Q psy15255 128 GNNLWPE-FLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYL--VVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 128 ~~~~~~~-ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~--~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
...+.|- |.|++-..-++. -..+|.+++.+++.++..-+.+...|. ..|++.+...|..+ ++--+.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKt 157 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKT 157 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHH
Confidence 3467775 677765444432 467899999999999976555544442 36677777677665 444443
No 292
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=41.97 E-value=84 Score=23.11 Aligned_cols=92 Identities=10% Similarity=0.008 Sum_probs=44.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-H-HHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-Y-LVVIKQML 180 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~-~~~l~~~l 180 (199)
...+++|..+.=++..+.....+ ..-+.+-.++...+.+++..-...++.++..+....++--.. + .+.+.+++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~----~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAARE----EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 35667888877777666422221 222334444444554443334556777777766554432110 0 12333333
Q ss_pred HHhhC-CCCCHHHhhhhhc
Q psy15255 181 QQCLL-PPNPYSVQALQLK 198 (199)
Q Consensus 181 ~~~l~-d~~~~~Vr~~A~~ 198 (199)
...+. .+++..+..++++
T Consensus 92 ~~~~~~~~~~~~~~~~~le 110 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALE 110 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHH
Confidence 33333 2236677766653
No 293
>KOG3961|consensus
Probab=41.95 E-value=29 Score=27.45 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..++|.|+.++.+.+-..|..|-+-+..+....++++.+-++.++.-+.+++... |.+|-.-++
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr-d~ev~~~~L 176 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR-DDEVICRTL 176 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc-cHHHHHHHH
Confidence 5689999999998887888888888888888877777777777877788888886 777654443
No 294
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=41.64 E-value=9 Score=19.00 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCCCCHHHhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.|++++.+.|+++ |..+|.+
T Consensus 3 ~IVpyi~~~L~N~-~LAl~lA 22 (24)
T PF09268_consen 3 NIVPYILNTLQNP-DLALRLA 22 (24)
T ss_dssp THHHHHHHTT--H-HHHHHHH
T ss_pred cchhHHHhccCCH-HHHHHHh
Confidence 5778888888887 7777765
No 295
>PHA02836 putative transmembrane protein; Provisional
Probab=41.01 E-value=57 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCC
Q psy15255 152 ESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~ 187 (199)
.+-+..++.++|..+++ ...|++.|++.+.+.+.|.
T Consensus 105 LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 105 LTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 34566788889998877 7889999999999998874
No 296
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=40.82 E-value=1.4e+02 Score=23.62 Aligned_cols=60 Identities=13% Similarity=0.305 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhHh-----hhccCChH---HHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLID-----DAGNNLWP---EFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~-----~~~~~~~~---~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
++++.|.+++..+.+.+-..... ......|. .+...+++...++++.+|..+++-+..++
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 67788888877777766555432 11235675 46777888888889999999999888775
No 297
>KOG4524|consensus
Probab=40.26 E-value=3.2e+02 Score=26.57 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC------CCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA------GNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~------~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
|-......|.+ ++..+|-++-++...-.--+-+.. -+..||.++. .+. ..++.+-..|++|+-
T Consensus 804 Il~r~~~~LS~-e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie---------~~~-~k~~L~v~~a~~~i~ 872 (1014)
T KOG4524|consen 804 ILGRGIHLLSH-ESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIE---------CLL-CKDPLIVQRAFSCIE 872 (1014)
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHH---------HHh-cCchHHHHHHHHHHH
Confidence 33444556666 777778776666554332221111 1577887654 444 678888888889888
Q ss_pred HHHHHhHh----hhccCChHHHHHHHHHHh
Q psy15255 118 EVARNLID----DAGNNLWPEFLQFLFQCA 143 (199)
Q Consensus 118 ~i~~~~~~----~~~~~~~~~ll~~l~~~~ 143 (199)
.+.....+ .+....||.+-..+....
T Consensus 873 ~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 873 QMGKYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765543 112246777666666655
No 298
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=40.20 E-value=1.2e+02 Score=20.71 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE 169 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l 169 (199)
....+++..+.+-+++++|.+..-|+.++-.++...++.+
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 4677899999999999999999999999999998877664
No 299
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=40.18 E-value=38 Score=21.21 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.6
Q ss_pred hHhhhhccCHhhHHHHHHHHHHHH
Q psy15255 29 FIEIYSKLAVNDQNNLKSQIILLL 52 (199)
Q Consensus 29 ~~~~~~~l~~~~~~~ik~~ll~~L 52 (199)
++..|.+.+++.|+.+-+.+-++|
T Consensus 41 FE~~W~~~~~~ek~~m~~~l~~~l 64 (65)
T TIGR03092 41 FEAIWKHANEQEKDEMLETLEQGV 64 (65)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 488999999999998777776655
No 300
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=36.62 E-value=1.8e+02 Score=21.74 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=40.3
Q ss_pred hccCChHHHHHH----HHHHhcCC--CHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 127 AGNNLWPEFLQF----LFQCANSD--NTTLKESALRLFTSVPEIFGNQEST-YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 127 ~~~~~~~~ll~~----l~~~~~~~--~~~vr~~a~~~l~~i~e~~~~~l~~-~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+|.-.|+.+-+. +...++.+ ++.+...|+..+-.++..-+..-.. ....=++-+..+++++ +++++..|+
T Consensus 47 Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~nai 123 (160)
T PF11841_consen 47 HGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAI 123 (160)
T ss_pred cCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHH
Confidence 445688654444 34444432 6788889999998888653331110 0112244455566776 777877664
No 301
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=36.47 E-value=43 Score=22.38 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 149 TLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 149 ~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
..|.+|+-.+++++..++-++.++++.++..+.....|+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~ 42 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP 42 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC
Confidence 346788888888888887777778888877777776664
No 302
>KOG2213|consensus
Probab=36.36 E-value=1.8e+02 Score=25.25 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH---------HHHH
Q psy15255 108 IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV---------VIKQ 178 (199)
Q Consensus 108 vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~---------~l~~ 178 (199)
-++.|.+.|-.....+++ .-++-+..-+.++.|.|..+|.-|++-+-.+|.. +.+....+ .+-.
T Consensus 40 ~k~lasq~ip~~fk~fp~-----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk~sl~~ 112 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPS-----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNKASLTG 112 (460)
T ss_pred HHHHHHHHHHHHHhhCch-----hhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHHHHHHH
Confidence 344455555555544432 2344556667788889999999999999888864 22222122 2233
Q ss_pred HHHHhhCCCCCHHHhhhhhcC
Q psy15255 179 MLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 179 ~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+.+... . |..+|-.+++|
T Consensus 113 Lf~~~~~-~-D~~irek~l~f 131 (460)
T KOG2213|consen 113 LFGQIEV-G-DEQIREKVLKF 131 (460)
T ss_pred HHhhhhh-h-hHHHHHHHHHH
Confidence 3333333 4 67777666655
No 303
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=36.31 E-value=1.3e+02 Score=25.69 Aligned_cols=87 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC-CHH
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN-PYS 191 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~-~~~ 191 (199)
++-+..+....+.-...-.|..+.+.+..++-+++..+|-+|++++-++......-..=..-.+.-++..++.-+. ...
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Q ss_pred HhhhhhcC
Q psy15255 192 VQALQLKF 199 (199)
Q Consensus 192 Vr~~A~~f 199 (199)
=|.+|+||
T Consensus 84 ER~QALkl 91 (371)
T PF14664_consen 84 EREQALKL 91 (371)
T ss_pred HHHHHHHH
No 304
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=36.27 E-value=1.8e+02 Score=27.02 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHH
Q psy15255 58 DNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 136 (199)
Q Consensus 58 ~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll 136 (199)
+.-|..+-...+.+++.- -.| ..++++-+=..|++++..+.+..+-..|+.++..++..++. .+..+.|+|+
T Consensus 82 ~~~Rl~~L~Ll~~~v~~q------p~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~-~l~~~L~~Lf 154 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQ------PPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS-SLGPHLPDLF 154 (668)
T ss_pred chhHHHHHHHHHHHHhcC------CchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-hhhHHHHHHH
Confidence 455666666666666542 223 22222222223777888788888989999999988877653 4568899999
Q ss_pred HHHHHHhc
Q psy15255 137 QFLFQCAN 144 (199)
Q Consensus 137 ~~l~~~~~ 144 (199)
.++..++.
T Consensus 155 ~If~Rl~~ 162 (668)
T PF04388_consen 155 NIFGRLLS 162 (668)
T ss_pred HHHHHHHH
Confidence 99988883
No 305
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=36.20 E-value=3.3e+02 Score=24.67 Aligned_cols=115 Identities=9% Similarity=0.150 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcC----CCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDA----GNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 43 ~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~----~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
.+-+.+-...... ....|+++.|++...|+..+-... +.-.|-+.+.. +...+.+++. . ... -..+.-.+.
T Consensus 129 ~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~-i~~~~~~~~~-K-~kh-w~~afPL~t 204 (552)
T PF14222_consen 129 EFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET-IYPRAAKMMS-K-PKH-WNVAFPLVT 204 (552)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH-HHHHHHHHHh-C-cch-hhhHHHHHH
Confidence 4455566666665 456699999999999987775432 12467776543 1222333443 1 111 112344444
Q ss_pred HHHHHhHhhhccCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 118 EVARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++...+.+....+|. .++..+..-++|. ..|..++.+++.++=
T Consensus 205 ~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlW 249 (552)
T PF14222_consen 205 TLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLW 249 (552)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHH
Confidence 4443333445568999 6998888888776 678999999988873
No 306
>PLN03205 ATR interacting protein; Provisional
Probab=35.97 E-value=3e+02 Score=24.15 Aligned_cols=95 Identities=9% Similarity=0.147 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhh------ccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhh--HHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDA------GNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQE--STYL 173 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~------~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l--~~~~ 173 (199)
-.+..+-++++.++..+..++..+. ....|-.|+....|.+. +....||.-|+.++.-|+..-+.+. +.|-
T Consensus 334 v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~eREkFG 413 (652)
T PLN03205 334 AETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYTARESFV 413 (652)
T ss_pred cCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhHHHHHhc
Confidence 4566677888888888888887521 23578889988888765 5678899999999888875433332 1221
Q ss_pred -HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 174 -VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 174 -~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+..-+.+.++-..-..|+.+|+
T Consensus 414 ~~~VfESiaQLLkkEaGl~VqKeal 438 (652)
T PLN03205 414 SKEVFESISLLLRKEGGLHVRKEAI 438 (652)
T ss_pred chHHHHHHHHHHHHhccchhhHHHH
Confidence 133444444444432345666654
No 307
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=35.69 E-value=1.9e+02 Score=21.65 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFT 159 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~-~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~ 159 (199)
.-.|..+-+.-||.. ...+. ...+.++...+..++-.++.........-.-.-=++.+...++++++.++..|+..+.
T Consensus 49 ~vsWd~l~~~FI~Ki-a~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLin 127 (160)
T PF11841_consen 49 IVSWDTLSDSFIKKI-ASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALIN 127 (160)
T ss_pred cCchhhccHHHHHHH-HHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 557977766555532 22222 1225666666555554444332210000000112344555566789999999999999
Q ss_pred hhhHhhhh
Q psy15255 160 SVPEIFGN 167 (199)
Q Consensus 160 ~i~e~~~~ 167 (199)
++.--.++
T Consensus 128 AL~~kA~~ 135 (160)
T PF11841_consen 128 ALFLKADD 135 (160)
T ss_pred HHHhcCCh
Confidence 99865544
No 308
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=35.30 E-value=45 Score=16.53 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhH
Q psy15255 150 LKESALRLFTSVPE 163 (199)
Q Consensus 150 vr~~a~~~l~~i~e 163 (199)
||..|..+++.+-.
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68889999988765
No 309
>KOG1566|consensus
Probab=34.55 E-value=1.9e+02 Score=24.35 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHHHH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 138 FLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTYLV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.--.++.+++--.|.-+.++++.+.-..+.. +..|+. .=+.++...|+|+ +..++.+|+
T Consensus 216 ~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAF 278 (342)
T KOG1566|consen 216 VYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAF 278 (342)
T ss_pred HHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHH
Confidence 3555677888889999999999987655433 456665 3456678899998 889999986
No 310
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=34.28 E-value=1.6e+02 Score=24.22 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=40.9
Q ss_pred ChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCC
Q psy15255 131 LWP-EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 131 ~~~-~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d 186 (199)
.|. .|...+..++.+++......|+..+..+.+.+|- ...+...|...+.....+
T Consensus 223 kWh~~i~~~l~~~L~s~eym~iRNai~vL~~i~~~FP~-v~~~~~~l~~~l~~l~~~ 278 (298)
T PF11262_consen 223 KWHKRITKALISCLESKEYMHIRNAIIVLKKISPVFPV-VDDHGEKLEKALEKLLEE 278 (298)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHh
Confidence 454 3668888899889999999999999999998874 344556666666555444
No 311
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=34.27 E-value=1.8e+02 Score=21.85 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 92 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 92 ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
+|+++.+.+..+..|+||......++.+++...
T Consensus 65 Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~ 97 (167)
T PF11099_consen 65 IKNEVIEILLSDNRPSVKLATISLISIIIEKWG 97 (167)
T ss_dssp HHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCCCceeehHHHHHHHHHHHHh
Confidence 566677788867789999998888888887664
No 312
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.81 E-value=1.5e+02 Score=20.10 Aligned_cols=64 Identities=9% Similarity=0.040 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
+-++++..+.+-+....+..|..++.++..++......- ..+...+++++....... |+++|..
T Consensus 34 ~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~-~~~~r~k 98 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKV-DEKTRKK 98 (114)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhC-CHHHHHH
Confidence 456777787888877778889999999999998765543 233445577777777765 7888753
No 313
>KOG1087|consensus
Probab=33.77 E-value=3.4e+02 Score=24.10 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH---HHHHHHHHHHHhhCCC-CCHHHhhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST---YLVVIKQMLQQCLLPP-NPYSVQALQL 197 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~---~~~~l~~~l~~~l~d~-~~~~Vr~~A~ 197 (199)
.+-++.+-.|.+-+++.++.+...|+.+|-.++..+++.+.. ..+.+..|+. +.... .+..||..++
T Consensus 34 ~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk-~~k~~~~~~~Vr~kiL 104 (470)
T KOG1087|consen 34 GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVK-RPKNKPRDLKVREKIL 104 (470)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-ccccCCcchhHHHHHH
Confidence 445688999999999988899999999999998888776421 1223333333 44433 3677876554
No 314
>KOG1789|consensus
Probab=33.71 E-value=5.2e+02 Score=26.15 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhH---hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh--hhhhh-
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLI---DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI--FGNQE- 169 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~--~~~~l- 169 (199)
|+.++ ...|+.|..+++++..+.+.-- +....+..-+++..+ +.+.++++|-.|...|+++... .++..
T Consensus 1818 LL~lL--HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~---c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ 1892 (2235)
T KOG1789|consen 1818 LLTLL--HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSIL---CLTNSDQQRAQAAELLAKLQADKLTGPRVT 1892 (2235)
T ss_pred HHHHH--hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHH---hccCcHHHHHHHHHHHHHhhhccccCCcee
Confidence 55555 4778899999999887765321 000112233333332 4457889999999999997632 22221
Q ss_pred HHHHHHHHHHHHHhhCCC
Q psy15255 170 STYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 170 ~~~~~~l~~~l~~~l~d~ 187 (199)
...+..++..+...+.|+
T Consensus 1893 ITL~kFLP~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1893 ITLIKFLPEIFADSLRDS 1910 (2235)
T ss_pred eehHHhchHHHHHHHhcC
Confidence 234556677788888885
No 315
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=33.29 E-value=2.3e+02 Score=22.41 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=33.2
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhh
Q psy15255 129 NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 129 ~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
.++||++++.+....++.+.-.|.+++-..... ..+. ++...+.+++-..++|. +.-|+.
T Consensus 113 ~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~---~k~~--~~~~~if~i~E~~l~d~-e~fV~K 172 (222)
T COG4912 113 IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVY---KKKT--LDLLEIFEIIELLLGDK-EFFVQK 172 (222)
T ss_pred cccCHHHHHHHHhccccchHHHHHHHHHHHHHH---hcCc--cchhHHHHHHHHHccCh-HHHHHH
Confidence 479999999986655555555555444333222 2111 12224566666666665 555554
No 316
>KOG1822|consensus
Probab=32.88 E-value=6.3e+02 Score=26.87 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=72.4
Q ss_pred ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 35 KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 35 ~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
.+.++.-.+.+-.++...-.-+++..|-.++-..|.++--.=+. .--.++.+. .+.-+.+..++.-|..-.-
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~-----~fdklas~~d~i~R~ghsl 938 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQN-----SFDKLASARDPITRTGHSL 938 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHH-----HHHHHHhcCCcHHHHHHHH
Confidence 45555555555555555555589999988777777776432110 001233443 3334442333333333223
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.++.+-++........+...=+..++...+|+ +|.|++-++.++..+.+...+-
T Consensus 939 alg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~ 993 (2067)
T KOG1822|consen 939 ALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPM 993 (2067)
T ss_pred HHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCce
Confidence 34444444432111245566566888888887 7799999999999998876554
No 317
>KOG2199|consensus
Probab=32.72 E-value=3.3e+02 Score=23.66 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHH
Q psy15255 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQ 181 (199)
Q Consensus 114 ~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~ 181 (199)
+.|..++..+..+ ...-.+-+.++.+-+.+.|+.|..-|+.++.++...+++-+ +.|.+.+..++.
T Consensus 27 ~~IlDvCD~v~~~--~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 27 SLILDVCDKVGSD--PDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred HHHHHHHHhhcCC--CcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh
Confidence 4445545444322 13445678888999999999999999999999998877654 345555555444
No 318
>KOG0168|consensus
Probab=32.54 E-value=4.7e+02 Score=25.33 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC----CCChHHHHHHHHH--------H---------------
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG----NNLWPEFLQNNLK--------S--------------- 94 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~----~~~WpeLl~~~ik--------~--------------- 94 (199)
+.+--.|..+|++|.+..+-..+|.++.-+..-+-++.+ .+.-|-|+..++- +
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 345667889999999999999999999988876643322 3445555433220 0
Q ss_pred --------HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 95 --------QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 95 --------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
..+..|. -=+..+.+.|..+++.++..+.++. -...-+-+|.|...++..|-+.-+.++-++..+++.+.
T Consensus 290 iL~AG~l~a~LsylD-FFSi~aQR~AlaiaaN~Cksi~sd~-f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLD-FFSIHAQRVALAIAANCCKSIRSDE-FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHhcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 0111111 1123455566667777766665422 34567889999999999998899999999999987664
No 319
>KOG3036|consensus
Probab=32.54 E-value=2.8e+02 Score=22.64 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhcc--CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGN--NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~--~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.+..-.|..+..+|+.++...-. ... --|.+++|...+.+..++..-+..|..++.+|+.
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~-eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQ-EVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcH-HHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 34566898999999988875422 111 2468899999999999999999999999998863
No 320
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=32.11 E-value=2.9e+02 Score=22.84 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=29.4
Q ss_pred ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q psy15255 35 KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 35 ~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~ 73 (199)
.++.+....+-..+-.++++ ..+.+|+.-...++.++.
T Consensus 53 ~~~~~~~~~~~~~~~kGl~~-kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 53 FLSSELPKKVVDAFKKGLKD-KKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HhCcCCCHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHh
Confidence 34555566667777889998 777799999999998887
No 321
>KOG0889|consensus
Probab=31.78 E-value=6.4e+02 Score=28.61 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=95.3
Q ss_pred CHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc-----CCCCChH------------HHHHHHHHHHHHHH
Q psy15255 37 AVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD-----AGNNLWP------------EFLQNNLKSQIILL 99 (199)
Q Consensus 37 ~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~-----~~~~~Wp------------eLl~~~ik~~ll~~ 99 (199)
...++....+.+...+.....+..|..+.+....+++...-. .+.+.|. .+-+.++=-.|+.+
T Consensus 913 ~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~ 992 (3550)
T KOG0889|consen 913 DYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVES 992 (3550)
T ss_pred chhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHH
Confidence 344777888888888887777788988888888888776210 0111110 01122222236667
Q ss_pred HhhcccHHHHHHHHHHHHHHHHHhHhh-------hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHH
Q psy15255 100 LQTCDNDNIRRKICDAAAEVARNLIDD-------AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-EST 171 (199)
Q Consensus 100 l~~~~~~~vr~~a~~~i~~i~~~~~~~-------~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~ 171 (199)
+. ..+..++..+..++..+....... .-..-.+.|++.+++++-++.|..|.+++..+..+++.++.. +-+
T Consensus 993 l~-~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d 1071 (3550)
T KOG0889|consen 993 LS-HENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLD 1071 (3550)
T ss_pred Hh-ccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHH
Confidence 76 677778877777776665544321 112445789999999999999999999999999999988854 233
Q ss_pred HHHHHHHHHHHhhCC
Q psy15255 172 YLVVIKQMLQQCLLP 186 (199)
Q Consensus 172 ~~~~l~~~l~~~l~d 186 (199)
+...++.-+...+.|
T Consensus 1072 ~~~d~~~~l~fvl~d 1086 (3550)
T KOG0889|consen 1072 FQVDILKALFFVLKD 1086 (3550)
T ss_pred HHHHHhhhHHHhhcC
Confidence 333444334334444
No 322
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=31.71 E-value=61 Score=20.48 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.4
Q ss_pred hHhhhhccCHhhHHHHHHHHHHHH
Q psy15255 29 FIEIYSKLAVNDQNNLKSQIILLL 52 (199)
Q Consensus 29 ~~~~~~~l~~~~~~~ik~~ll~~L 52 (199)
++..|.+.+++.|+.+-..+-++|
T Consensus 44 FE~~W~~~~~~ek~~m~~~l~~~l 67 (68)
T PRK02955 44 FEVIWKNADENEKDEMLETLEQGL 67 (68)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 388999999999998777766654
No 323
>KOG2011|consensus
Probab=31.70 E-value=2.3e+02 Score=27.77 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh--hhH----HHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN--QES----TYLVVI 176 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~--~l~----~~~~~l 176 (199)
+-.+.+|--..+-++......++.+. -..+|.-+-=++.|.+..||..+++++-.+.+.-.. .+. .|-+.|
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 44677776655555555554444221 134555555667888999999999999999876221 133 444555
Q ss_pred HHHHHHhhCCCCCHHHhhhhh
Q psy15255 177 KQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 177 ~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.|. ..|- ++.||..++
T Consensus 375 VeMa---drd~-~~~Vrav~L 391 (1048)
T KOG2011|consen 375 VEMA---DRDR-NVSVRAVGL 391 (1048)
T ss_pred HHHH---hhhc-chhHHHHHH
Confidence 5544 3454 667776543
No 324
>KOG4833|consensus
Probab=31.63 E-value=1.7e+02 Score=25.41 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhH----HHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQES----TYLVVIK 177 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~----~~~~~l~ 177 (199)
++..++-|++.++... . +.-++++.+.+...| +....|..|+.+++.+..++.-.++ ..+..|+
T Consensus 265 edhsSvVhkafeaAil--l---------nffeiLqrlLlndadGgidchrStacmcisafiafveinLeLetdGnledIi 333 (573)
T KOG4833|consen 265 EDHSSVVHKAFEAAIL--L---------NFFEILQRLLLNDADGGIDCHRSTACMCISAFIAFVEINLELETDGNLEDII 333 (573)
T ss_pred hhHHHHHHHHHHHHHH--H---------HHHHHHHHHHhhhccCCcccchhHHHHHHHHHHHHHhhheeeccCCcHHHHH
Confidence 4455666666554321 1 222344444444444 4667899999999999888765542 3466788
Q ss_pred HHHHHhhCCC
Q psy15255 178 QMLQQCLLPP 187 (199)
Q Consensus 178 ~~l~~~l~d~ 187 (199)
.+....++|+
T Consensus 334 DiaceVlade 343 (573)
T KOG4833|consen 334 DIACEVLADE 343 (573)
T ss_pred HHHHHHHcCc
Confidence 8888888886
No 325
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.61 E-value=1.9e+02 Score=20.47 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcC---CCHHHHHHHHHHHHhhhHhhhh
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANS---DNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~---~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
=+. .+++.+...|+.++-.++......+....- .+++.-+.+.+.+ .++.||.-++..+..-...+..
T Consensus 45 rl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 45 KIK-YGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344 678899989888888777765432211111 2344445666653 4889999999999998887765
No 326
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=31.17 E-value=88 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=23.5
Q ss_pred HHHHHHHhc-C-CCHHHHHHHHHHHHhhhHhhhh
Q psy15255 136 LQFLFQCAN-S-DNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 136 l~~l~~~~~-~-~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
+|.+++++. | .+|-+|+-|.-++-.+++.-.+
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 444444443 4 4999999999999999987554
No 327
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=31.09 E-value=2.1e+02 Score=20.90 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=51.8
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e----~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
-..|.+-..+.++.+.+..++-+... .+..+-.+...+...+.++- ....=.+++-.+.+..|...++ .++
T Consensus 58 ~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k----~~~~v~~mL~rl~~PiL~r~L~-~~n 132 (152)
T PF12422_consen 58 FRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQK----KRKGVDEMLLRLYEPILWRALQ-AAN 132 (152)
T ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcc----cccchHHHHHHHHHHHHHHHHc-CCC
Confidence 34577777777888888777777662 12233333333444443332 2333445555566777888888 788
Q ss_pred HHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAE 118 (199)
Q Consensus 106 ~~vr~~a~~~i~~ 118 (199)
..||..|..+...
T Consensus 133 ~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 133 AKVRSNAAALFLD 145 (152)
T ss_pred cchhccHHHHHHH
Confidence 8999887777654
No 328
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=30.68 E-value=2.1e+02 Score=20.80 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=52.8
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhH--hhhccCChHHHHHHHHHHhcCCCH-----------HH-----H-HHHHHH
Q psy15255 97 ILLLQTCDNDNIRRKICDAAAEVARNLI--DDAGNNLWPEFLQFLFQCANSDNT-----------TL-----K-ESALRL 157 (199)
Q Consensus 97 l~~l~~~~~~~vr~~a~~~i~~i~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~-----------~v-----r-~~a~~~ 157 (199)
+..++ ++--.-|+.+++-+-.++..-. .......|..++..|++++..+-. .. | ..+..+
T Consensus 10 ~~~L~-S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~ 88 (155)
T PF11640_consen 10 LRLLS-SDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASA 88 (155)
T ss_pred HHHHh-ccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHH
Confidence 34555 4444568888888877765332 222347899999999998863211 11 2 234444
Q ss_pred HHhhhHhhhhhhH-HHHHHHHHHHHHhhCCC
Q psy15255 158 FTSVPEIFGNQES-TYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 158 l~~i~e~~~~~l~-~~~~~l~~~l~~~l~d~ 187 (199)
+-.+++...+.+. .....|+..+.+.+.++
T Consensus 89 lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~ 119 (155)
T PF11640_consen 89 LRLFVEKSNSRLKRKTVKALLDHITDLLPDP 119 (155)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHhhCC
Confidence 4444544444442 34566677777777776
No 329
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=30.50 E-value=3.3e+02 Score=22.98 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHH
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTT 149 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 149 (199)
+++.--++++.+++|=.+.+...|+ +.+-.++...-. -.+..-.+++.++..++...++.
T Consensus 164 ~~~~~PfLrAalvfce~s~~~~~v~----~li~~Va~~~~s-l~~~~G~~fL~Ff~~ll~~~n~~ 223 (337)
T PF12030_consen 164 AQLCDPFLRAALVFCERSPDADRVQ----DLIRHVAKQVRS-LQNAEGRAFLDFFRGLLNLRNER 223 (337)
T ss_pred hhhhhHHHHHHHHHHHcCCCHHHHH----HHHHHHHHHhcc-cccCCcHhHHHHHHHHHhCcCcc
Confidence 4443334455566655533333343 333333333221 11234567777777777654443
No 330
>KOG4199|consensus
Probab=29.21 E-value=3.7e+02 Score=23.09 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh-c-----CcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL-I-----DDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDA 115 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~-l-----~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~ 115 (199)
..+-..|.++++.--+|.+-..++.+++.|+-+. + +.+| +. .++.++..+.....|..+ ..
T Consensus 240 e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GG-------l~-----tl~~~i~d~n~~~~r~l~-k~ 306 (461)
T KOG4199|consen 240 EGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGG-------LD-----TLLRCIDDSNEQGNRTLA-KT 306 (461)
T ss_pred hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccC-------HH-----HHHHHHhhhchhhHHHHH-HH
Confidence 3344455566655444555455555555554321 0 0000 11 266788744556666332 33
Q ss_pred HHHHHHHhHhhh-------ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhhCC-
Q psy15255 116 AAEVARNLIDDA-------GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCLLP- 186 (199)
Q Consensus 116 i~~i~~~~~~~~-------~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l~d- 186 (199)
...+.+.+..+. ..+..|.+++...+- +.||.|-+.+|-+++-++--.++.-..+++ ..-....+.|+.
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 333333333210 113445555554332 357888889999888887665555332222 223333444443
Q ss_pred CCCHHHhhhhh
Q psy15255 187 PNPYSVQALQL 197 (199)
Q Consensus 187 ~~~~~Vr~~A~ 197 (199)
|-...|+..||
T Consensus 385 P~~a~vQrnac 395 (461)
T KOG4199|consen 385 PVAAQVQRNAC 395 (461)
T ss_pred cHHHHHHHHHH
Confidence 32334665555
No 331
>KOG1048|consensus
Probab=29.07 E-value=4.9e+02 Score=24.48 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH-HH-----HHHHHHhhcccHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL-KS-----QIILLLQTCDNDNIRRKICDA 115 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i-k~-----~ll~~l~~~~~~~vr~~a~~~ 115 (199)
..|....+..|..+.++.+-.+.+-++-.+. .+...|++-+...+ .. .|+.+++ .+++.|...++..
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt------A~~~~~~~~~~~~v~~kekgl~~l~~ll~-~~~~~vv~s~a~~ 589 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLT------AGLWTWSEYMRGAVFRKEKGLPPLVELLR-NDDSDVVRSAAGA 589 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhh------ccCCcchhHHHhhhhhhccCccHHHHHHh-cCCchHHHHHHHH
Confidence 4455556666665556666665554444443 44677888766555 32 4888999 5555665565666
Q ss_pred HHHHHHHhHh--hhccCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhh
Q psy15255 116 AAEVARNLID--DAGNNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVP 162 (199)
Q Consensus 116 i~~i~~~~~~--~~~~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~ 162 (199)
+-.++...-. ..+....++|+..|-..-.+ .++++-.++|..+..++
T Consensus 590 LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 590 LRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred HhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 6555432211 11223344444433222221 24556666777766666
No 332
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=28.99 E-value=70 Score=19.04 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=21.9
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 161 VPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 161 i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++..++++...|-+.+..++.+.-..= +++.|..-|
T Consensus 5 va~cYp~~~~~Fp~~L~~lL~~~~~~L-~p~lR~~lv 40 (52)
T PF08158_consen 5 VAHCYPKETKDFPQELIDLLRNHHTVL-DPDLRMKLV 40 (52)
T ss_pred cccccHHHHHHHHHHHHHHHHhccccC-CHHHHHHHH
Confidence 444455556666677777776654443 777776544
No 333
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.90 E-value=2.3e+02 Score=20.52 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhh-CCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCL-LPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l-~d~~~~~Vr~~A~ 197 (199)
-+-+..+.+-++++++.+...|+.++-.++...+..+ ..|.+.+..++..-- ++..++.|+...+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil 108 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII 108 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 3567778888999999999999999999998887664 345566665553211 1112677875543
No 334
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=28.16 E-value=2.3e+02 Score=22.90 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhh---ccCChH---HHHHHHHHHhcC-CCHHHHHHHHHHHHhhhH
Q psy15255 107 NIRRKICDAAAEVARNLIDDA---GNNLWP---EFLQFLFQCANS-DNTTLKESALRLFTSVPE 163 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~---~~~~~~---~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e 163 (199)
+.|..++++++.+.-..-... -.+.|. .|...|.+.+.+ .++..||-|+-.+.+++.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~ 202 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQ 202 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhc
Confidence 457788999988764332100 025564 577788888875 488899999999999974
No 335
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=27.96 E-value=3.7e+02 Score=22.65 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=42.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhHh----hhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 138 FLFQCANSDNTTLKESALRLFTSVPEI----FGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~l~~i~e~----~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+++.++.++=++-.-|+..|-.+... ..+.+..+.+.+...+..+++++ +.=+|..++|
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslk 231 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLK 231 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHH
Confidence 477888888877777777777776532 12224566778888888899887 8888887775
No 336
>KOG2011|consensus
Probab=27.82 E-value=6.1e+02 Score=25.11 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHh-----cCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCA-----NSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~-----~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+++.-+|..+ .|-++.+|-..++.+|--+..++..+-. +..+.++-=.|.|. +.+||...++
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk-~~~VRl~~lk 348 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDK-NGTVRLRCLK 348 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecC-ccHHHHHHHH
Confidence 3445666666665 3569999999999999999988877543 57777888888897 8899987653
No 337
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=27.31 E-value=2.8e+02 Score=21.01 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh---hhhhHHHHHHHHHHHHHh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF---GNQESTYLVVIKQMLQQC 183 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~---~~~l~~~~~~l~~~l~~~ 183 (199)
+-..++..+.-.+.+.+..+...+-.+|...+... ...+....+.+..++...
T Consensus 84 y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~ 139 (193)
T PF12612_consen 84 YRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKEN 139 (193)
T ss_pred HHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666667666666422 122344455555555544
No 338
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.93 E-value=1.7e+02 Score=21.80 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.2
Q ss_pred hhccCHhhHHHHHHHHHHHHhcCCchh
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQTCDNDN 59 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~e~~~~ 59 (199)
.+.|+++.++.++..+..++.+.|...
T Consensus 95 ~eeLs~deke~~~~sl~dL~~d~PkT~ 121 (158)
T PF10083_consen 95 DEELSPDEKEQFKESLPDLTKDTPKTK 121 (158)
T ss_pred hhcCCHHHHHHHHhhhHHHhhcCCccH
Confidence 568999999999999999999966443
No 339
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.39 E-value=1.2e+02 Score=24.74 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=35.7
Q ss_pred hhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q psy15255 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 72 (199)
Q Consensus 31 ~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la 72 (199)
.-|..++.+.+...-..+++.|.+ ++...|.++..++.=++
T Consensus 48 ~~W~~~~~~~~~~~i~~ll~~L~~-~~~~~R~~al~~LlYi~ 88 (293)
T PF07923_consen 48 PSWDELSFDQRKDFIEKLLDQLES-SDSEDRLEALRALLYIA 88 (293)
T ss_pred ccccccchhhHHHHHHHHHHhccc-cchhhHHHHHHHHHHHH
Confidence 458899999999999999999999 78889988888887777
No 340
>KOG1058|consensus
Probab=25.86 E-value=5.9e+02 Score=24.35 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHh--hcccHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQ--TCDNDNIRRKICDAA 116 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~--~~~~~~vr~~a~~~i 116 (199)
..-..+-.-+|..|.+ ++-.||+|.-+.+-.|... ..-.++++. +|-++.+.-. .+++...|....+++
T Consensus 313 ~il~~l~mDvLrvLss-~dldvr~Ktldi~ldLvss-------rNvediv~~-Lkke~~kT~~~e~d~~~~yRqlLikti 383 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVSS-------RNVEDIVQF-LKKEVMKTHNEESDDNGKYRQLLIKTI 383 (948)
T ss_pred HHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhh-------ccHHHHHHH-HHHHHHhccccccccchHHHHHHHHHH
Confidence 3345556667888888 9999999987777666532 122344332 2222333222 234455677777888
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
..++..+++ .-.+.++.+...+.|.++.--...+.-+..+.|.++
T Consensus 384 h~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 384 HACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 777766554 446788888888888777554444444444444443
No 341
>PF06926 Rep_Org_C: Putative replisome organiser protein C-terminus; InterPro: IPR009696 This entry represents the C terminus (approximately 100 residues) of a putative replisome organiser protein in Lactococcus bacteriophages [].
Probab=25.74 E-value=2.1e+02 Score=19.11 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+.+..+.... ..+...|..|+..|..+...-.++ +....+-+..+-...-.|+ +..--+.|.+|
T Consensus 5 s~yf~~F~nf~-~kn~~kRa~A~~eFi~L~~~QkeqaViGA~NY~~~Ykn~~~dD~-~~kySvNa~~F 70 (95)
T PF06926_consen 5 SEYFDTFSNFS-KKNISKRAMALQEFIKLPSEQKEQAVIGAKNYVQWYKNENPDDN-TGKYSVNAYEF 70 (95)
T ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHcCCCCC-CcceeecHHHH
Confidence 34455544433 344445888888888877653333 3334455555555554443 44444444443
No 342
>KOG1078|consensus
Probab=24.79 E-value=6.2e+02 Score=24.20 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..-..+++++-.++.+.+..+-.-|.+++..+....++.+.| -...+..++.+| .+..|.+|++
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp-~~~lRfaAvR 304 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSP-KVALRFAAVR 304 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCc-HHHHHHHHHH
Confidence 334578999999999998888888889999988887777666 344555566676 7778887763
No 343
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=24.75 E-value=84 Score=19.70 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=17.3
Q ss_pred hHhhhhccCHhhHHHHHHHHHH
Q psy15255 29 FIEIYSKLAVNDQNNLKSQIIL 50 (199)
Q Consensus 29 ~~~~~~~l~~~~~~~ik~~ll~ 50 (199)
+|..|.+.+++.|+.+-+.+-+
T Consensus 42 FE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 42 FEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 3889999999999876665544
No 344
>KOG2973|consensus
Probab=24.18 E-value=1.8e+02 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
+--++..+.+++|.||..|+.-+..+...=.+.+..+....++-+.+.+.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~ 56 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDL 56 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCc
Confidence 3456777888999999999988777765411224444445555555565654
No 345
>KOG0803|consensus
Probab=23.99 E-value=6.6e+02 Score=25.59 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
..|+.+...++. +.+..||...-+++..+...+-. ...++...++|...-...|.+..|-.+|...|...
T Consensus 82 ~~w~~i~~kl~~---------d~~~~VR~~t~~v~s~l~t~lkk-~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 82 PEWLVIYAKLII---------DEDRTVRLLTHDVFSKLLTKLKK-KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred HHHHHHHHHHhc---------CccHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhh
Confidence 457777654332 88999999887777776655432 22355566777766666677666666666666555
Q ss_pred hH
Q psy15255 162 PE 163 (199)
Q Consensus 162 ~e 163 (199)
.+
T Consensus 152 f~ 153 (1312)
T KOG0803|consen 152 FA 153 (1312)
T ss_pred cC
Confidence 43
No 346
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=23.79 E-value=2.5e+02 Score=25.80 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=27.0
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 134 EFLQFLFQCA-NSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 134 ~ll~~l~~~~-~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.+++.+...+ .++++.+|..+++++..+....+++
T Consensus 441 ~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~ 476 (633)
T PF08568_consen 441 QFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEE 476 (633)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcH
Confidence 3455555555 4679999999999999999887765
No 347
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=23.49 E-value=70 Score=15.95 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhh
Q psy15255 148 TTLKESALRLFTSV 161 (199)
Q Consensus 148 ~~vr~~a~~~l~~i 161 (199)
+.+|..|..+++.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 46899999999987
No 348
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=23.45 E-value=5.6e+02 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHHhhhHhhhhhhH
Q psy15255 133 PEFLQFLFQCANSDNTTLK--ESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr--~~a~~~l~~i~e~~~~~l~ 170 (199)
...++.+.+.++.|+|..- ..-|.+..+|.+.+++++.
T Consensus 295 ~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~i~ 334 (589)
T PF11229_consen 295 QSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNKIQ 334 (589)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCccccc
Confidence 4567777777777765433 3346667777777766653
No 349
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=23.21 E-value=2.8e+02 Score=22.45 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHH--HHHHHHHHHHhhCCC-CCHHHhhhhhcC
Q psy15255 136 LQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTY--LVVIKQMLQQCLLPP-NPYSVQALQLKF 199 (199)
Q Consensus 136 l~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~--~~~l~~~l~~~l~d~-~~~~Vr~~A~~f 199 (199)
+..+...+. ..++.++.+++.++..++-.-+.....| .+.+. .+...+++. .+.+||...++|
T Consensus 135 m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~-~v~~llk~~~~~~~~r~K~~EF 201 (257)
T PF08045_consen 135 MELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLS-TVCSLLKSKSTDRELRLKCIEF 201 (257)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH-HHHHHHccccccHHHhHHHHHH
Confidence 444555553 3467888888888888876555554333 23332 223344442 267788887776
No 350
>KOG2021|consensus
Probab=22.69 E-value=6.9e+02 Score=23.98 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHH--HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQ--CANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~--~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l 180 (199)
.+++.|...=.+.+..-...+ + ....+.|-++..+.. ++.+.+..||.-|-..|..++..+.+++.++++.+..++
T Consensus 504 h~h~lVqLlfmE~ivRY~kff-~-~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~i 581 (980)
T KOG2021|consen 504 HDHELVQLLFMELIVRYNKFF-S-TESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKI 581 (980)
T ss_pred CCchHHHHHHHHHHHHHHHHH-h-cchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555455554433222 1 123567777776653 445678999999999999999999998999999999999
Q ss_pred HHhhCC
Q psy15255 181 QQCLLP 186 (199)
Q Consensus 181 ~~~l~d 186 (199)
...+..
T Consensus 582 qdlL~~ 587 (980)
T KOG2021|consen 582 QDLLHI 587 (980)
T ss_pred HHHHcC
Confidence 888843
No 351
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.35 E-value=2.7e+02 Score=19.12 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=37.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc-CCCHH-HHHHHHHHHHhhhHhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTT-LKESALRLFTSVPEIF 165 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~-vr~~a~~~l~~i~e~~ 165 (199)
+..++.....++.+-.+.-+++.++.... --++++..+.+.+- +.... ....++.++..++..-
T Consensus 11 l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 11 LLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 55577655667888777777777776432 33444444444443 22222 1466788888877554
No 352
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.16 E-value=6.1e+02 Score=23.55 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=33.5
Q ss_pred HhcCCCHHHHHHHHHHHHhhhHhhhhh--h----HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 142 CANSDNTTLKESALRLFTSVPEIFGNQ--E----STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 142 ~~~~~~~~vr~~a~~~l~~i~e~~~~~--l----~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
++.|.+..+|....+++-.+++..+.. + ..|.+.|+.+.. .|. |- ||..+++
T Consensus 322 ~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r---~D~-d~-VRi~sik 379 (740)
T COG5537 322 SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLR---TDS-DC-VRICSIK 379 (740)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh---hcc-ch-hhHHHHH
Confidence 456778899999999999988765422 3 344445554433 454 55 8877654
No 353
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=21.96 E-value=1.2e+02 Score=16.26 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.1
Q ss_pred hhccCHhhHHHHHHHHHHHHhc
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQT 54 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~ 54 (199)
..++++..+..+|..+.+.|.+
T Consensus 15 ~k~L~~~~k~~~k~~i~~ll~e 36 (37)
T PF02944_consen 15 MKRLPPKQKLKFKMKILQLLFE 36 (37)
T ss_pred HHhCCHHHHHHHHHHHHHHHHh
Confidence 5789999999999999998864
No 354
>KOG2020|consensus
Probab=20.24 E-value=3.1e+02 Score=27.06 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 108 IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 108 vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
++.+...+..+|+....+ ..||+++|-+.+... .++.+++.++.++--+.|.+-
T Consensus 112 ~~~kL~~i~Vqi~K~eWp----~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lLsEdvf 165 (1041)
T KOG2020|consen 112 LLNKLNLILVQIVKREWP----AIWPTFIPDLAQSSK-TSETVCELSMIILLLLSEEVF 165 (1041)
T ss_pred HHHHHhHHHHHHHHHHHH----hhcchhhhhHHHHhh-cCcccchHHHHHHHHHHHHHh
Confidence 455556666777766554 689999999888876 566678888888888877654
Done!