Query psy15255
Match_columns 199
No_of_seqs 157 out of 923
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 16:21:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.8 7.5E-20 2.6E-24 167.0 17.2 176 7-198 58-237 (852)
2 1ibr_B P95, importin beta-1 su 99.8 4.8E-19 1.6E-23 149.8 17.5 185 2-198 42-239 (462)
3 2bpt_A Importin beta-1 subunit 99.8 7.1E-18 2.4E-22 152.8 20.3 186 2-198 46-246 (861)
4 1qgr_A Protein (importin beta 99.7 7E-17 2.4E-21 146.6 17.7 185 2-198 42-239 (876)
5 1wa5_C Importin alpha RE-expor 99.6 4E-14 1.4E-18 130.9 15.5 188 2-199 42-315 (960)
6 3m1i_C Exportin-1; heat repeat 99.4 9E-13 3.1E-17 123.0 13.2 148 3-166 56-227 (1049)
7 1ibr_B P95, importin beta-1 su 99.4 3.3E-12 1.1E-16 107.7 12.8 170 8-198 12-196 (462)
8 1u6g_C TIP120 protein, CAND1; 99.4 5.3E-12 1.8E-16 119.2 14.3 174 8-197 17-196 (1230)
9 2x1g_F Cadmus; transport prote 99.4 7.8E-12 2.7E-16 115.5 15.0 147 3-164 47-219 (971)
10 1b3u_A Protein (protein phosph 99.3 1.3E-11 4.4E-16 107.1 13.7 174 9-198 99-303 (588)
11 2x19_B Importin-13; nuclear tr 99.3 3.5E-11 1.2E-15 110.9 17.3 176 3-197 65-260 (963)
12 2bpt_A Importin beta-1 subunit 99.3 6.8E-11 2.3E-15 107.0 18.6 170 9-198 17-203 (861)
13 1qgr_A Protein (importin beta 99.3 1.4E-11 4.9E-16 111.7 14.2 170 8-198 12-196 (876)
14 3a6p_A Exportin-5; exportin-5, 99.3 1.5E-11 5.1E-16 116.3 14.6 177 4-198 54-269 (1204)
15 2qk2_A LP04448P; mini spindles 99.3 1.4E-10 4.9E-15 90.7 16.4 169 9-198 27-198 (242)
16 4fdd_A Transportin-1; heat rep 99.3 6.1E-11 2.1E-15 108.2 14.5 174 9-199 102-279 (852)
17 2qk1_A Protein STU2; STU2P, XM 99.2 1.7E-09 5.7E-14 85.5 17.8 177 9-198 28-213 (249)
18 3gjx_A Exportin-1; transport, 99.2 7.2E-10 2.5E-14 103.4 15.6 177 2-198 67-268 (1073)
19 1u6g_C TIP120 protein, CAND1; 99.1 5.2E-10 1.8E-14 105.6 14.1 171 9-198 60-236 (1230)
20 1b3u_A Protein (protein phosph 99.1 1.4E-09 4.8E-14 94.2 13.6 96 96-198 169-264 (588)
21 4hat_C Exportin-1; heat repeat 99.1 8.4E-10 2.9E-14 102.8 12.4 176 3-198 56-256 (1023)
22 2qk2_A LP04448P; mini spindles 98.9 8.9E-08 3E-12 74.7 15.6 137 48-199 20-156 (242)
23 4db6_A Armadillo repeat protei 98.9 6.8E-09 2.3E-13 78.8 8.5 174 9-198 24-202 (210)
24 3ibv_A Exportin-T; karyopherin 98.8 2E-07 6.8E-12 86.6 17.6 175 3-198 48-253 (980)
25 2jdq_A Importin alpha-1 subuni 98.7 1.6E-08 5.4E-13 84.9 6.8 179 9-197 32-213 (450)
26 4db8_A Armadillo-repeat protei 98.7 5.6E-08 1.9E-12 75.6 9.5 178 9-198 24-202 (252)
27 4hxt_A De novo protein OR329; 98.7 1.7E-07 5.7E-12 72.4 11.8 174 9-198 14-192 (252)
28 1oyz_A Hypothetical protein YI 98.7 8.7E-07 3E-11 70.1 16.3 155 9-197 35-213 (280)
29 4hxt_A De novo protein OR329; 98.7 2.2E-07 7.4E-12 71.8 11.7 174 9-198 56-234 (252)
30 4db8_A Armadillo-repeat protei 98.7 2.6E-07 8.9E-12 71.8 12.2 174 9-198 66-244 (252)
31 2qk1_A Protein STU2; STU2P, XM 98.7 5.5E-07 1.9E-11 71.0 13.6 143 48-199 21-169 (249)
32 2jdq_A Importin alpha-1 subuni 98.7 1.9E-07 6.6E-12 78.3 11.3 179 9-198 119-298 (450)
33 3ltj_A Alpharep-4; protein eng 98.7 5E-07 1.7E-11 68.1 12.6 78 98-198 114-191 (201)
34 3ltm_A Alpha-REP4; protein eng 98.7 6.5E-07 2.2E-11 67.9 13.3 110 48-197 86-195 (211)
35 2vgl_B AP-2 complex subunit be 98.6 3E-07 1E-11 80.9 12.2 161 9-198 61-261 (591)
36 3ltm_A Alpha-REP4; protein eng 98.6 1.2E-06 3.9E-11 66.5 13.3 135 9-198 31-165 (211)
37 1xqr_A HSPBP1 protein; armadil 98.6 8.7E-07 3E-11 71.6 13.2 169 10-197 53-230 (296)
38 4db6_A Armadillo repeat protei 98.6 3E-07 1E-11 69.5 9.3 149 42-198 11-160 (210)
39 1oyz_A Hypothetical protein YI 98.5 3.2E-06 1.1E-10 66.8 14.6 77 98-197 166-242 (280)
40 3m1i_C Exportin-1; heat repeat 98.5 1.2E-06 4.1E-11 81.8 13.7 138 48-198 53-217 (1049)
41 1wa5_C Importin alpha RE-expor 98.5 2.9E-06 1E-10 78.4 15.7 111 47-166 39-155 (960)
42 3ltj_A Alpharep-4; protein eng 98.5 4.6E-07 1.6E-11 68.3 8.2 112 47-198 49-160 (201)
43 1wa5_B Importin alpha subunit; 98.4 1.2E-06 4.1E-11 75.7 10.6 175 9-198 185-363 (530)
44 1wa5_B Importin alpha subunit; 98.4 8.2E-07 2.8E-11 76.7 9.5 174 9-198 143-321 (530)
45 4b8j_A Importin subunit alpha- 98.4 1.9E-06 6.4E-11 74.3 10.5 174 9-198 86-266 (528)
46 4b8j_A Importin subunit alpha- 98.3 2.3E-06 7.8E-11 73.7 9.3 173 10-198 131-308 (528)
47 2x19_B Importin-13; nuclear tr 98.3 2.8E-05 9.7E-10 71.5 16.3 138 48-197 62-223 (963)
48 2x1g_F Cadmus; transport prote 98.2 6.7E-06 2.3E-10 75.9 9.9 137 48-197 44-210 (971)
49 2vgl_B AP-2 complex subunit be 98.2 8.9E-06 3E-10 71.5 10.1 128 48-197 54-181 (591)
50 1te4_A Conserved protein MTH18 98.1 1.2E-07 4.2E-12 67.1 -1.8 111 46-197 15-125 (131)
51 1xqr_A HSPBP1 protein; armadil 98.1 5.6E-05 1.9E-09 61.0 13.3 141 9-165 94-240 (296)
52 4ffb_C Protein STU2; tubulin f 98.1 0.00014 4.8E-09 57.7 14.1 142 48-198 60-205 (278)
53 1w63_A Adapter-related protein 98.0 7E-05 2.4E-09 66.2 12.7 129 9-165 82-210 (618)
54 3tpo_A Importin subunit alpha- 97.9 0.00013 4.4E-09 63.1 12.8 172 9-197 263-441 (529)
55 2vgl_A Adaptor protein complex 97.9 0.00025 8.4E-09 62.8 14.9 149 9-183 86-236 (621)
56 3a6p_A Exportin-5; exportin-5, 97.9 0.00012 4E-09 69.5 13.2 98 55-165 58-164 (1204)
57 3tpo_A Importin subunit alpha- 97.9 8.2E-05 2.8E-09 64.3 10.8 144 42-197 250-398 (529)
58 2z6g_A B-catenin; FULL-length, 97.9 8.4E-05 2.9E-09 67.4 10.5 138 46-198 118-256 (780)
59 3ul1_B Importin subunit alpha- 97.8 1.9E-05 6.4E-10 68.1 5.8 172 9-197 244-422 (510)
60 3ul1_B Importin subunit alpha- 97.8 0.00034 1.1E-08 60.3 13.0 167 9-198 113-296 (510)
61 2z6g_A B-catenin; FULL-length, 97.8 0.00057 1.9E-08 62.0 14.7 147 42-196 149-296 (780)
62 1te4_A Conserved protein MTH18 97.8 0.00015 5.2E-09 50.8 8.6 87 46-161 45-131 (131)
63 2of3_A ZYG-9; multifunctional 97.7 0.0013 4.5E-08 52.0 14.2 125 56-198 99-229 (266)
64 2iw3_A Elongation factor 3A; a 97.6 0.0038 1.3E-07 57.9 17.7 96 96-197 100-196 (986)
65 2db0_A 253AA long hypothetical 97.5 0.0065 2.2E-07 45.6 14.8 34 133-166 180-213 (253)
66 1jdh_A Beta-catenin; beta-cate 97.5 0.0014 4.9E-08 55.7 13.1 142 9-163 29-172 (529)
67 2z6h_A Catenin beta-1, beta-ca 97.5 0.00071 2.4E-08 59.8 11.4 145 45-197 16-161 (644)
68 2vgl_A Adaptor protein complex 97.5 0.0007 2.4E-08 59.9 11.0 92 95-197 115-208 (621)
69 2z6h_A Catenin beta-1, beta-ca 97.5 0.002 6.9E-08 56.8 13.8 169 9-194 26-201 (644)
70 1jdh_A Beta-catenin; beta-cate 97.4 0.0011 3.7E-08 56.5 10.8 144 43-196 17-163 (529)
71 1w63_A Adapter-related protein 97.4 0.0027 9.3E-08 56.0 13.3 120 43-181 313-432 (618)
72 4hat_C Exportin-1; heat repeat 97.4 0.0018 6.2E-08 60.5 12.6 136 49-197 54-216 (1023)
73 3gjx_A Exportin-1; transport, 97.4 0.0018 6.3E-08 60.6 12.4 134 50-196 67-227 (1073)
74 3now_A UNC-45 protein, SD10334 97.4 0.0028 9.4E-08 57.7 13.0 169 10-197 549-729 (810)
75 3nmw_A APC variant protein; AR 97.2 0.027 9.1E-07 46.3 16.0 170 9-197 139-326 (354)
76 3nmw_A APC variant protein; AR 97.1 0.035 1.2E-06 45.6 16.3 172 10-197 97-284 (354)
77 3nmz_A APC variant protein; pr 97.1 0.02 6.9E-07 48.8 14.8 174 9-197 255-442 (458)
78 3b2a_A TON_1937, putative unch 97.1 0.0014 4.6E-08 50.9 6.7 139 44-198 34-172 (265)
79 4ady_A RPN2, 26S proteasome re 96.9 0.0066 2.3E-07 56.0 11.1 96 48-164 582-677 (963)
80 2of3_A ZYG-9; multifunctional 96.9 0.0065 2.2E-07 48.1 9.6 119 36-173 125-246 (266)
81 3ibv_A Exportin-T; karyopherin 96.8 0.034 1.2E-06 51.8 15.3 136 7-165 18-160 (980)
82 3now_A UNC-45 protein, SD10334 96.8 0.018 6.2E-07 52.4 12.8 144 43-197 290-442 (810)
83 2iw3_A Elongation factor 3A; a 96.8 0.018 6E-07 53.5 12.8 128 45-187 97-225 (986)
84 3nmz_A APC variant protein; pr 96.7 0.13 4.5E-06 43.7 17.1 165 11-197 214-400 (458)
85 3tjz_B Coatomer subunit gamma; 96.6 0.045 1.5E-06 45.1 13.0 126 9-163 80-205 (355)
86 1xm9_A Plakophilin 1; armadill 96.6 0.047 1.6E-06 46.1 13.4 127 47-184 6-136 (457)
87 3l9t_A Putative uncharacterize 96.5 0.013 4.5E-07 45.4 8.7 82 99-198 79-161 (240)
88 3gs3_A Symplekin, LD45768P; he 96.5 0.06 2.1E-06 42.3 12.6 107 81-199 48-167 (257)
89 4ffb_C Protein STU2; tubulin f 96.5 0.049 1.7E-06 42.8 12.0 104 51-167 111-216 (278)
90 3oc3_A Helicase MOT1, MOT1; re 96.3 0.021 7.2E-07 49.9 9.3 135 44-197 175-320 (800)
91 3tjz_B Coatomer subunit gamma; 96.1 0.039 1.3E-06 45.4 9.7 89 96-197 109-197 (355)
92 3l6x_A Catenin delta-1; cateni 96.1 0.14 4.8E-06 44.9 13.7 143 45-197 310-468 (584)
93 4ady_A RPN2, 26S proteasome re 96.0 0.099 3.4E-06 48.3 12.7 131 46-197 510-668 (963)
94 1xm9_A Plakophilin 1; armadill 95.9 0.11 3.8E-06 43.8 11.8 145 44-197 284-441 (457)
95 3l6x_A Catenin delta-1; cateni 95.7 1 3.5E-05 39.5 19.0 101 96-197 313-424 (584)
96 2db0_A 253AA long hypothetical 95.5 0.56 1.9E-05 35.3 15.8 85 104-198 119-203 (253)
97 3l9t_A Putative uncharacterize 95.5 0.19 6.5E-06 38.9 10.6 136 31-195 62-197 (240)
98 3o2t_A Symplekin; heat repeat, 95.3 0.18 6.1E-06 41.9 10.8 106 82-199 59-177 (386)
99 1upk_A MO25 protein; transfera 95.3 0.82 2.8E-05 37.2 14.3 139 57-197 91-275 (341)
100 3opb_A SWI5-dependent HO expre 95.2 0.43 1.5E-05 43.1 13.7 135 46-187 609-759 (778)
101 3b2a_A TON_1937, putative unch 95.2 0.83 2.8E-05 35.5 15.3 144 35-196 107-252 (265)
102 4gmo_A Putative uncharacterize 95.1 0.02 6.9E-07 51.1 4.8 62 134-197 35-97 (684)
103 1lrv_A LRV, leucine-rich repea 94.6 0.016 5.5E-07 45.2 2.4 41 139-198 199-239 (244)
104 3oc3_A Helicase MOT1, MOT1; re 94.5 0.22 7.7E-06 43.6 9.5 132 41-198 297-429 (800)
105 3tt9_A Plakophilin-2; cell adh 94.5 0.14 4.7E-06 39.6 7.5 97 96-197 13-116 (233)
106 4atg_A TAF6; transcription, TF 93.5 1.8 6.1E-05 32.4 11.7 74 114-187 64-143 (196)
107 3opb_A SWI5-dependent HO expre 93.2 0.39 1.3E-05 43.5 8.8 96 97-196 612-719 (778)
108 4gmo_A Putative uncharacterize 92.5 0.21 7.1E-06 44.5 6.2 69 96-166 39-108 (684)
109 3u0r_A Apoptosis inhibitor 5; 91.4 0.8 2.7E-05 39.1 8.2 73 103-186 39-111 (507)
110 1vsy_5 Proteasome activator BL 91.2 1.4 4.9E-05 41.0 10.3 142 13-169 817-972 (997)
111 3gs3_A Symplekin, LD45768P; he 90.9 4.7 0.00016 31.4 13.3 114 37-162 47-172 (257)
112 1lrv_A LRV, leucine-rich repea 90.6 0.044 1.5E-06 42.7 -0.2 18 179-197 198-215 (244)
113 3u0r_A Apoptosis inhibitor 5; 89.2 9.8 0.00033 32.5 15.3 148 7-186 38-188 (507)
114 3o2t_A Symplekin; heat repeat, 89.0 7 0.00024 32.3 11.8 109 42-162 62-182 (386)
115 1ho8_A Vacuolar ATP synthase s 88.1 1.4 4.7E-05 37.6 7.1 58 104-163 417-476 (480)
116 3tt9_A Plakophilin-2; cell adh 86.6 1.8 6E-05 33.3 6.4 62 135-197 9-73 (233)
117 3dad_A FH1/FH2 domain-containi 86.3 12 0.00041 30.3 14.0 100 96-197 165-278 (339)
118 3grl_A General vesicular trans 85.1 20 0.00068 31.8 14.3 64 133-197 121-187 (651)
119 1vsy_5 Proteasome activator BL 84.7 1.1 3.8E-05 41.8 5.2 92 96-194 848-955 (997)
120 1lsh_A Lipovitellin (LV-1N, LV 84.4 7.6 0.00026 36.4 10.7 137 40-197 389-535 (1056)
121 1ho8_A Vacuolar ATP synthase s 78.5 9.9 0.00034 32.4 8.4 85 30-121 379-476 (480)
122 1vsy_4 Proteasome activator BL 74.7 35 0.0012 31.0 11.4 92 98-192 346-442 (799)
123 1vdy_A Hypothetical protein (R 73.5 15 0.00051 25.8 7.0 54 114-168 30-83 (140)
124 3eg5_B Protein diaphanous homo 72.1 16 0.00054 30.0 8.0 59 107-165 135-193 (383)
125 1dvp_A HRS, hepatocyte growth 62.9 45 0.0015 24.9 10.3 63 131-197 39-107 (220)
126 1x5b_A Signal transducing adap 59.4 45 0.0015 23.7 8.3 61 133-197 51-117 (163)
127 1juq_A ADP-ribosylation factor 55.7 54 0.0019 23.5 8.5 65 133-197 49-120 (171)
128 3fga_B Serine/threonine-protei 55.6 88 0.003 25.9 15.9 52 147-199 264-316 (403)
129 3grl_A General vesicular trans 51.8 1.3E+02 0.0044 26.7 11.4 65 96-165 127-197 (651)
130 2npp_B PP2A, B subunit, serine 47.3 1.3E+02 0.0043 25.3 15.9 48 151-199 301-349 (449)
131 3zyq_A Hepatocyte growth facto 46.7 89 0.003 23.4 10.4 63 131-197 42-110 (226)
132 1sz9_A PCF11 protein; RNA poly 45.8 73 0.0025 22.1 7.9 65 130-195 39-104 (144)
133 1lsh_A Lipovitellin (LV-1N, LV 45.1 1.4E+02 0.0049 27.8 10.1 35 130-164 387-425 (1056)
134 2f31_A Diaphanous protein homo 44.6 41 0.0014 25.3 5.4 33 133-165 95-127 (233)
135 2b6c_A Hypothetical protein EF 44.6 72 0.0025 23.6 6.8 55 134-195 124-178 (220)
136 1upk_A MO25 protein; transfera 43.8 1.3E+02 0.0043 24.3 11.5 89 98-187 216-313 (341)
137 3ldz_A STAM-1, signal transduc 43.7 77 0.0026 21.8 8.2 59 133-196 41-105 (140)
138 4atg_A TAF6; transcription, TF 43.1 98 0.0033 22.8 9.2 58 107-165 105-164 (196)
139 3dad_A FH1/FH2 domain-containi 40.6 1.4E+02 0.0049 24.0 10.3 63 103-166 213-289 (339)
140 1t06_A Hypothetical protein; s 40.1 1.2E+02 0.004 22.8 7.4 60 133-196 107-171 (235)
141 3hgl_A Effector protein hopab2 38.5 18 0.00061 22.7 2.0 45 2-54 14-59 (85)
142 1w9c_A CRM1 protein, exportin 38.4 1.5E+02 0.0052 23.7 10.8 92 104-197 85-188 (321)
143 2npp_B PP2A, B subunit, serine 37.3 1.8E+02 0.0063 24.3 10.1 66 130-197 322-391 (449)
144 2fv2_A RCD1 required for cell 36.4 1.5E+02 0.0051 23.0 10.0 57 106-163 116-174 (268)
145 1mhq_A ADP-ribosylation factor 36.1 1.1E+02 0.0037 21.3 8.8 65 133-197 37-108 (148)
146 3g2s_A C-terminal fragment of 35.8 1.1E+02 0.0038 21.3 9.4 65 133-197 47-118 (149)
147 2jak_A Serine/threonine-protei 34.9 1.9E+02 0.0065 23.8 14.8 47 152-199 314-361 (392)
148 4f52_E Glomulin; cullin-ring E 30.4 2.7E+02 0.0093 24.2 11.2 70 98-168 324-400 (596)
149 1vsy_4 Proteasome activator BL 29.4 3.2E+02 0.011 24.7 12.8 124 35-166 327-458 (799)
150 3s4w_B Protein FACD2, fanconi 25.1 4.8E+02 0.016 25.3 13.4 68 102-173 410-477 (1323)
151 3ut4_A CTHE_2751, putative unc 23.6 96 0.0033 21.4 3.9 32 131-162 28-59 (134)
152 3tjy_A Effector protein hopab3 23.4 53 0.0018 20.8 2.3 45 2-54 12-57 (94)
153 1n6j_G Calcineurin-binding pro 22.6 68 0.0023 16.1 2.2 18 34-51 7-24 (35)
154 2jak_A Serine/threonine-protei 22.6 1.7E+02 0.0058 24.1 5.8 50 130-181 334-383 (392)
155 3ebb_A Phospholipase A2-activa 22.1 2.9E+02 0.0098 21.6 9.2 102 96-197 152-255 (304)
156 1elk_A Target of MYB1; superhe 21.1 2.2E+02 0.0074 19.9 9.1 63 133-197 52-122 (157)
157 2jr2_A UPF0352 protein CPS_261 20.7 1.5E+02 0.005 18.3 3.8 25 30-54 42-66 (76)
158 1sz9_A PCF11 protein; RNA poly 20.2 2.2E+02 0.0075 19.6 7.7 61 104-164 55-115 (144)
159 3fga_B Serine/threonine-protei 20.2 3.7E+02 0.013 22.2 11.6 66 130-197 289-358 (403)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.83 E-value=7.5e-20 Score=166.95 Aligned_cols=176 Identities=11% Similarity=0.091 Sum_probs=152.0
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHH
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE 86 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe 86 (199)
.+.++.+|++||++|||.++.+ |..++++.|++||+.++++|.+ +++.||+++|.+++.+++.. +.+.||+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~----w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~----~~~~wp~ 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAH----FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKG----ELQNWPD 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTS----GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHT----TTTTCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhc----CccccHH
Confidence 4578999999999999999988 9999999999999999999997 78899999999999999986 3578999
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh----ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 87 FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA----GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 87 Ll~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
+++. ++..++ ++++.+|..++.++..++....+.. ....++.++|.+.++++++++.+|..|+.+++.++
T Consensus 129 ll~~-----L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 129 LLPK-----LCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp HHHH-----HHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred HHHH-----HHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9998 556777 7788999999999999987765421 12458999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 163 EIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 163 e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+..+.++.+.+++.+...++|+ +++||..||+
T Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~ 237 (852)
T 4fdd_A 203 ISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCR 237 (852)
T ss_dssp TTTCHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 7665555666777778888888997 9999998874
No 2
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.82 E-value=4.8e-19 Score=149.80 Aligned_cols=185 Identities=14% Similarity=0.212 Sum_probs=150.6
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh-------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF-------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~-------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
+++.+.+.++.+|++|+++|||.++.+| ...|..++++.+++||+.+++.|.+ +++.+ +++|.+++.+++.
T Consensus 42 ~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~ 119 (462)
T 1ibr_B 42 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACA 119 (462)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHH
Confidence 4566665689999999999999998764 3459999999999999999999999 56677 9999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTL 150 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~--~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~v 150 (199)
..+ .+.||++++. |+..++ ++ ++.+|..++.++..++....+.....+.+.+++.+.++++++ ++.+
T Consensus 120 ~~~---~~~w~~ll~~-----L~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~v 190 (462)
T 1ibr_B 120 EIP---VNQWPELIPQ-----LVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190 (462)
T ss_dssp HGG---GTCCTTHHHH-----HHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHH
T ss_pred hcc---ccccHHHHHH-----HHHHhc-cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHH
Confidence 866 3689999998 566777 55 889999999999998875522233567789999999999988 7999
Q ss_pred HHHHHHHHHhhhHhhhhhhH--HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 151 KESALRLFTSVPEIFGNQES--TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 151 r~~a~~~l~~i~e~~~~~l~--~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|..|+++++.+++++.+.+. .+.+.+.+.+...+.++ +++||..+++
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~ 239 (462)
T 1ibr_B 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQ 239 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 99999999998877654432 12345667777788887 9999988874
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.79 E-value=7.1e-18 Score=152.85 Aligned_cols=186 Identities=15% Similarity=0.176 Sum_probs=151.7
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh-------Hhhhhc-cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF-------IEIYSK-LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~-------~~~~~~-l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~ 73 (199)
+++.+.+.++.+|++|+++|||.++.+| ...|.. ++++.+.+||+.+++.|.+ +++.+|++++.+++.+++
T Consensus 46 ~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~ 124 (861)
T 2bpt_A 46 QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIAD 124 (861)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHH
Confidence 3556665789999999999999997764 345886 9999999999999999999 678899999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHhHhhh--ccCChHHHHHHHHHHhcCC--CH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDA--GNNLWPEFLQFLFQCANSD--NT 148 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~-~~~vr~~a~~~i~~i~~~~~~~~--~~~~~~~ll~~l~~~~~~~--~~ 148 (199)
..++ .+.||++++. |+..+. ++ ++.+|..++.++..++....+.. ...+.+.+++.+.+++.++ ++
T Consensus 125 ~~~p---~~~w~~ll~~-----L~~~l~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 195 (861)
T 2bpt_A 125 IELP---HGAWPELMKI-----MVDNTG-AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195 (861)
T ss_dssp HHGG---GTCCHHHHHH-----HHHHTS-TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred hhCc---ccccHHHHHH-----HHHHHh-cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 9876 3589999998 556777 45 88999999999988886543211 2357789999999999987 89
Q ss_pred HHHHHHHHHHHhhhHhhhhhhH--HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 149 TLKESALRLFTSVPEIFGNQES--TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 149 ~vr~~a~~~l~~i~e~~~~~l~--~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+|..|+++++.+++++...+. .+.+.+++.+...++++ ++++|..|++
T Consensus 196 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~ 246 (861)
T 2bpt_A 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFG 246 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 9999999999998877665432 23456777777888887 9999988874
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.74 E-value=7e-17 Score=146.59 Aligned_cols=185 Identities=14% Similarity=0.229 Sum_probs=150.2
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchh-------hHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTD-------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~-------~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
+++.+.+.++.+|++|+++||+.+..+ +...|..++++.+++||..+++.|.+ +++.+ ++++.+++.+++.
T Consensus 42 ~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~ 119 (876)
T 1qgr_A 42 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACA 119 (876)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHh
Confidence 345665568999999999999988643 24669999999999999999999998 56667 9999999999998
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTL 150 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~--~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~v 150 (199)
..+ ...||++++. ++..+. ++ ++.+|..++.++..++....++....+.+.+++.+.+++.++ ++.+
T Consensus 120 ~~~---~~~w~~ll~~-----l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~v 190 (876)
T 1qgr_A 120 EIP---VNQWPELIPQ-----LVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190 (876)
T ss_dssp HGG---GTCCTTHHHH-----HHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHH
T ss_pred hCc---ccccHHHHHH-----HHHHHh-CCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHH
Confidence 765 4789999998 556777 56 889999999999998875422223567899999999999987 7899
Q ss_pred HHHHHHHHHhhhHhhhhhhH--HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 151 KESALRLFTSVPEIFGNQES--TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 151 r~~a~~~l~~i~e~~~~~l~--~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|..|+++++.+++++++.+. ...+.+++.+...++++ +++||..|++
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~ 239 (876)
T 1qgr_A 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQ 239 (876)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 99999999999987765542 22345777778888887 8999988875
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.57 E-value=4e-14 Score=130.95 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=126.5
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhHhhhh------ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYS------KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 75 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~------~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~ 75 (199)
+++.+.+.+.++|++||++|||.++.+ |. .++++.|++||+.+++++.+++ +.||+++|.+++.|++..
T Consensus 42 ~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d 116 (960)
T 1wa5_C 42 HVIASTNLPLSTRLAGALFFKNFIKRK----WVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSD 116 (960)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhc----CCCcccCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhh
Confidence 455666678999999999999999998 76 7999999999999999999955 999999999999999998
Q ss_pred cCcCCCCChHHHHHHHHHH----------H-------H----------------------------HHHHh------hcc
Q psy15255 76 IDDAGNNLWPEFLQNNLKS----------Q-------I----------------------------ILLLQ------TCD 104 (199)
Q Consensus 76 l~~~~~~~WpeLl~~~ik~----------~-------l----------------------------l~~l~------~~~ 104 (199)
++ +.||+|++.++.. . + +..+. .++
T Consensus 117 ~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~ 192 (960)
T 1wa5_C 117 FP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITAN 192 (960)
T ss_dssp ST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred Cc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 6899999886621 0 0 01110 000
Q ss_pred cH---HHHHHHHHH---HHHHHHHhH----hhhccCChHHHHHHHHHHhcCC------C---------HHHHHHHHHHHH
Q psy15255 105 ND---NIRRKICDA---AAEVARNLI----DDAGNNLWPEFLQFLFQCANSD------N---------TTLKESALRLFT 159 (199)
Q Consensus 105 ~~---~vr~~a~~~---i~~i~~~~~----~~~~~~~~~~ll~~l~~~~~~~------~---------~~vr~~a~~~l~ 159 (199)
.. .++ .+.++ +..+...+. +.....+.+..++.+.+.+... + +.+|..+++++.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~ 271 (960)
T 1wa5_C 193 ENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQ 271 (960)
T ss_dssp C--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHH
Confidence 00 111 01111 111111110 1111123344556666655321 1 357889999999
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHhhC----CCCCHHHhhhhhcC
Q psy15255 160 SVPEIFGNQESTYLVVIKQMLQQCLL----PPNPYSVQALQLKF 199 (199)
Q Consensus 160 ~i~e~~~~~l~~~~~~l~~~l~~~l~----d~~~~~Vr~~A~~f 199 (199)
.+++..++.+.+|...+++.+...+. ...+++++..|++|
T Consensus 272 ~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 272 LYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 99998888888888888777766653 12267899998876
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.43 E-value=9e-13 Score=122.97 Aligned_cols=148 Identities=12% Similarity=0.216 Sum_probs=113.8
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHh
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--------NDNIRRKICDAAAEVARN 74 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--------~~~vR~~~~~~ia~la~~ 74 (199)
++.++ .++.+|++|+++||+.++.+ |..++++.|.+||+.+++.+.+++ ++.||+++|.+++.|++.
T Consensus 56 iL~~s-~~~~vr~~aa~~Lk~~i~~~----W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~ 130 (1049)
T 3m1i_C 56 ILQFS-TNPQSKFIALSILDKLITRK----WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1049)
T ss_dssp HHHHC-SCHHHHHHHHHHHHHHHHHT----GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhhC-CCHHHHHHHHHHHHHHHHhh----CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 44444 68999999999999999988 999999999999999999999854 478999999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh---------------hhccCChHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---------------DAGNNLWPEFLQFL 139 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~---------------~~~~~~~~~ll~~l 139 (199)
..+ +.||++++. ++..++ +++..+..+..++..+.....+ +....+.+.+++.+
T Consensus 131 ~~p----~~Wp~ll~~-----L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~ 199 (1049)
T 3m1i_C 131 EWP----QNWPEFIPE-----LIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1049)
T ss_dssp HTT----TTCTTHHHH-----HHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCc----ccchHHHHH-----HHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 865 689999998 445554 3444454555555544433321 01123467788888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHhhhHhhh
Q psy15255 140 FQCANS-DNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 140 ~~~~~~-~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.+++++ +++.++..+++++..++...+
T Consensus 200 ~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 200 FQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 888864 478899999999998877665
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.39 E-value=3.3e-12 Score=107.67 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCC------
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAG------ 80 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~------ 80 (199)
+++..+|..|---|++.-.. ....+-..|++.+.+.+ +..+|.. ++.++|+.++..+
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~------------~~~~~~~~L~~il~~~~~~~~vR~~----a~~~Lk~~i~~~~~~~~~~ 75 (462)
T 1ibr_B 12 SPDRLELEAAQKFLERAAVE------------NLPTFLVELSRVLANPGNSQVARVA----AGLQIKNSLTSKDPDIKAQ 75 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHCTTSCHHHHHH----HHHHHHHHHCCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh------------ChHHHHHHHHHHHHcCCCChHHHHH----HHHHHHHhccccchHHHHH
Confidence 45677888877777663321 12234456777887743 6778885 5566777665321
Q ss_pred -CCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHH
Q psy15255 81 -NNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESA 154 (199)
Q Consensus 81 -~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a 154 (199)
.+.|+.+ .+..+|+.++..+. ++++.+ +.++.+++.|+....+ .+.||+++|.++++++++ ++.+|+.|
T Consensus 76 ~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~---~~~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 76 YQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhcc---ccccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 1235544 55678889999998 566677 8899999999987654 358999999999999998 99999999
Q ss_pred HHHHHhhhHhh-hhhhHHHHHHHHHHHHHhhCCCC-CHHHhhhhhc
Q psy15255 155 LRLFTSVPEIF-GNQESTYLVVIKQMLQQCLLPPN-PYSVQALQLK 198 (199)
Q Consensus 155 ~~~l~~i~e~~-~~~l~~~~~~l~~~l~~~l~d~~-~~~Vr~~A~~ 198 (199)
+.+++.+++.. ++.+.++.+.+.+.+..+++|++ +++||.+|++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999876 44467888899999999999964 6899988863
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.37 E-value=5.3e-12 Score=119.20 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
++|..+|.+|.--|.+.+..+ ...+++.....+...+++.|.+ +++.+|+.++.+++.+++.. + ...|+.+
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~----~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~-~---~~~~~~i 87 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV-K---EYQVETI 87 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS-C---HHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHccc----ccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC-C---HHHHHHH
Confidence 478999999988888887665 4456677778888899999998 89999999999999998643 2 2456666
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-----hccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD-----AGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSV 161 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~-----~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i 161 (199)
++. ++..+. ++++.+|..++.++..++..+.+. .....|++++|.+++++. ++++.+|..|+.+++.+
T Consensus 88 ~~~-----Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 88 VDT-----LCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHH-----HHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHhc-CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 665 666777 777889999999999988765431 011369999999999998 48999999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++..++.+.+|.+.+++.+..++.|+ ++.||..|+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~ 196 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTI 196 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHH
Confidence 99888878889999999999999997 899998876
No 9
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.37 E-value=7.8e-12 Score=115.52 Aligned_cols=147 Identities=11% Similarity=0.148 Sum_probs=105.8
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHhhcCcCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAG 80 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--~~~vR~~~~~~ia~la~~~l~~~~ 80 (199)
++..+ .++++|++|+++||+.++.+ |..++++.+.++|+.+++.+.++. .+.||+++|.+++.|++...+
T Consensus 47 lL~~~-~~~~vr~~aa~~L~~~i~~~----w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--- 118 (971)
T 2x1g_F 47 LMQLG-KSQEVQFFGAITLHSKLMKH----WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--- 118 (971)
T ss_dssp HTCTT-SCHHHHHHHHHHHHHHHHHC----GGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHhcC-CcHHHHHHHHHHHHHHHHcc----HhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc---
Confidence 34443 78999999999999999998 999999999999999999999853 689999999999999999754
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHHHHHHHHhHh-----------hhccCChHHHHHHHHHHhc
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCD-----NDNIRRKICDAAAEVARNLID-----------DAGNNLWPEFLQFLFQCAN 144 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~-----~~~vr~~a~~~i~~i~~~~~~-----------~~~~~~~~~ll~~l~~~~~ 144 (199)
.||++++. ++..++... ++..+..+..++..+...... +......+.+++.+.++++
T Consensus 119 --~Wp~~l~~-----l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~ 191 (971)
T 2x1g_F 119 --EWPGAIEE-----VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLK 191 (971)
T ss_dssp --C------H-----HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred --cccHHHHH-----HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999987 445665211 445555566666655533211 1123467888888888875
Q ss_pred CC-C-------HHHHHHHHHHHHhhhHh
Q psy15255 145 SD-N-------TTLKESALRLFTSVPEI 164 (199)
Q Consensus 145 ~~-~-------~~vr~~a~~~l~~i~e~ 164 (199)
+. + +.++..+++++..++..
T Consensus 192 ~~~~~~~~~~~~~~~~~al~~l~~~~~~ 219 (971)
T 2x1g_F 192 LQMNRVWDAEAYSNMNRAVKCVGTWIKN 219 (971)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccchhHHHHHHHHHHHHHhh
Confidence 32 2 27899999999988773
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.34 E-value=1.3e-11 Score=107.10 Aligned_cols=174 Identities=18% Similarity=0.176 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHhhcchh---------------------h----------HhhhhccCHhhHHHHHHHHHHHHhcCCc
Q psy15255 9 RSVEERQMSAVLLRKIFSTD---------------------F----------IEIYSKLAVNDQNNLKSQIILLLQTCDN 57 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~---------------------~----------~~~~~~l~~~~~~~ik~~ll~~L~~e~~ 57 (199)
.++.+|..|+-.|.+..... + ..++..+++..+..+...+.+++.+ ++
T Consensus 99 ~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~ 177 (588)
T 1b3u_A 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-DT 177 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTC-SC
T ss_pred chHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCC-CC
Confidence 57888888887777754321 0 1234455666777888888888888 89
Q ss_pred hhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHH
Q psy15255 58 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ 137 (199)
Q Consensus 58 ~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~ 137 (199)
+.||..++..++.+++..=+ ...+++++|. ++.++. ++++.+|..++.++..++....+ ....+.++|
T Consensus 178 ~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~-----l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~ 245 (588)
T 1b3u_A 178 PMVRRAAASKLGEFAKVLEL---DNVKSEIIPM-----FSNLAS-DEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMP 245 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCH---HHHHHTHHHH-----HHHHHT-CSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhcH---HhHHHHHHHH-----HHHHhc-CCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 99999999999999876411 2234667775 445666 78899999999999998876533 124577899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 138 FLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.++++|++|.+|.+|+.+++.+++..+++ .+.+.+.+.+...++|+ +++||..|++
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~a~~ 303 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDC-EAEVRAAASH 303 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 9999999999999999999999999887554 24566788888899997 9999988763
No 11
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.34 E-value=3.5e-11 Score=110.91 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=122.6
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHhhcCcCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAG 80 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--~~~vR~~~~~~ia~la~~~l~~~~ 80 (199)
++.+ +.++.+|++|+++||+.++.+ |..++++.+..+|+.+++.+.+.+ .+.||+++|.+++.|++...+
T Consensus 65 lL~~-~~~~~vr~~aa~~L~~~i~~~----w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p--- 136 (963)
T 2x19_B 65 LLQP-DKVPEIQYFGASALHIKISRY----WSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP--- 136 (963)
T ss_dssp HTST-TSCHHHHHHHHHHHHHHHHHC----GGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT---
T ss_pred HhcC-CCchHHHHHHHHHHHHHHHhC----HHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc---
Confidence 3444 478999999999999999999 999999999999999999999853 589999999999999999875
Q ss_pred CCChHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHhHhh------------hccCChHHHHHHHHHHhc
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVARNLIDD------------AGNNLWPEFLQFLFQCAN 144 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~----~~~~vr~~a~~~i~~i~~~~~~~------------~~~~~~~~ll~~l~~~~~ 144 (199)
..||++++. ++.+++.+ +++..+..+..++..+...+.+. ......|.+++.+.++++
T Consensus 137 -~~Wp~~l~~-----l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~ 210 (963)
T 2x19_B 137 -DAWPCAVAD-----MVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQ 210 (963)
T ss_dssp -TTSTTHHHH-----HHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHS
T ss_pred -cccchHHHH-----HHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 359999997 55566520 24445556666666555433210 112456889999999887
Q ss_pred CCC--HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 145 SDN--TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 145 ~~~--~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+ ..++..+++++...+. .+..+. ..+.+++.+.+++.++ ++|.+|+
T Consensus 211 ~~~~~~~~~~~~l~~l~~wi~-~~~~~~-~~~~ll~~l~~~l~~~---~~~~~a~ 260 (963)
T 2x19_B 211 QPSSPSCVRQKVLKCFSSWVQ-LEVPLQ-DCEALIQAAFAALQDS---ELFDSSV 260 (963)
T ss_dssp CTTCCHHHHHHHHHHHHHHHT-SSCCGG-GTHHHHHHHHHHTTST---TTHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHc-CCCCcc-cchHHHHHHHHHhCCc---hHHHHHH
Confidence 652 2478888988876554 322221 1134445555565433 4555444
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.34 E-value=6.8e-11 Score=107.04 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCC-------
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAG------- 80 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~------- 80 (199)
++...|..|---|++.-..+ ....-..|++.+.++ .+..+|. .++.++++.++..+
T Consensus 17 ~d~~~r~~Ae~~L~~~~~~~------------~~~~~~~l~~il~~~~~~~~vR~----~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 17 PDQNIRLTSETQLKKLSNDN------------FLQFAGLSSQVLIDENTKLEGRI----LAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHTCTTSCHHHHH----HHHHHHHTTTCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHhCCCCChHHHH----HHHHHHHhhccCcChHHHHHH
Confidence 56667777766666643211 123344577888774 4677777 57788888876432
Q ss_pred CCChHH-H---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHH
Q psy15255 81 NNLWPE-F---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESAL 155 (199)
Q Consensus 81 ~~~Wpe-L---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~ 155 (199)
.+.|+. + ....+|+.++..+. ++++.+|+.++.+++.|+....+ .+.||++++.+.+.++++ ++.+|+.|+
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p---~~~w~~ll~~L~~~l~~~~~~~~r~~al 156 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELP---HGAWPELMKIMVDNTGAEQPENVKRASL 156 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGG---GTCCHHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCc---ccccHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 234775 5 55678899999998 77789999999999999987654 358999999999999998 999999999
Q ss_pred HHHHhhhHhhhhh---hHHHHHHHHHHHHHhhCCCC-CHHHhhhhhc
Q psy15255 156 RLFTSVPEIFGNQ---ESTYLVVIKQMLQQCLLPPN-PYSVQALQLK 198 (199)
Q Consensus 156 ~~l~~i~e~~~~~---l~~~~~~l~~~l~~~l~d~~-~~~Vr~~A~~ 198 (199)
.+++.+++.++.. +.++.+.|++.+..++.|++ +++||.+|++
T Consensus 157 ~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~ 203 (861)
T 2bpt_A 157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALN 203 (861)
T ss_dssp HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 9999999877655 46788899999999999853 7889988864
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.34 E-value=1.4e-11 Score=111.66 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcC-------
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDA------- 79 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~------- 79 (199)
+++.++|+.|...|++... +.+..+...|++.|.++ .++.+|.. ++.++++.+...
T Consensus 12 s~d~~~r~~A~~~L~~~~~------------~~~~~~~~~L~~~l~~~~~~~~vR~~----a~~~Lk~~i~~~~~~~~~~ 75 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAV------------ENLPTFLVELSRVLANPGNSQVARVA----AGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHCTTSCHHHHHH----HHHHHHHHHCCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh------------cChhhHHHHHHHHHhCCCCCHHHHHH----HHHHHHHhccccchHhHHH
Confidence 4688999999999987432 23456777889999885 35677774 556666655422
Q ss_pred CCCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHH
Q psy15255 80 GNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESA 154 (199)
Q Consensus 80 ~~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a 154 (199)
....|+.+ ....+|+.++..+. ++++.+ +.++.+++.|+....+ ..+||+++|.+.+.++++ ++.+|+.+
T Consensus 76 ~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~~i~~~~~~---~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 76 YQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHHHHHHhhCc---ccccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 13568776 56688889999998 566667 8899999999987543 478999999999999998 99999999
Q ss_pred HHHHHhhhHhhh-hhhHHHHHHHHHHHHHhhCCCC-CHHHhhhhhc
Q psy15255 155 LRLFTSVPEIFG-NQESTYLVVIKQMLQQCLLPPN-PYSVQALQLK 198 (199)
Q Consensus 155 ~~~l~~i~e~~~-~~l~~~~~~l~~~l~~~l~d~~-~~~Vr~~A~~ 198 (199)
+.+++.+++.+. +.+.++.+.+++.+..++.+++ +++||..|++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (876)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 999999998764 3367788899999999999863 5889988764
No 14
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.33 E-value=1.5e-11 Score=116.35 Aligned_cols=177 Identities=11% Similarity=0.180 Sum_probs=127.1
Q ss_pred ccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHhhcC
Q psy15255 4 IQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC------DNDNIRRKICDAAAEVARNLID 77 (199)
Q Consensus 4 ~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e------~~~~vR~~~~~~ia~la~~~l~ 77 (199)
|.+.+.++.+|++|+++||+.+..+ |..++++.|.+||+.+++.+.++ +.+.||+++|.+++.|++...+
T Consensus 54 L~~~s~~~~vR~~A~~~Lk~~I~~~----W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 54 LAEKTQVAIVRHFGLQILEHVVKFR----WNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp HTSTTSCHHHHHHHHHHHHHHHHHS----GGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHh----cccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc
Confidence 3344578999999999999999988 99999999999999999999875 4689999999999999999765
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-------------hccCChHHHHHHHHHHhc
Q psy15255 78 DAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD-------------AGNNLWPEFLQFLFQCAN 144 (199)
Q Consensus 78 ~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~-------------~~~~~~~~ll~~l~~~~~ 144 (199)
+.||++++. ++.+++ .++..+..++.++..+.....+. ......+++++.+.+.++
T Consensus 130 ----~~Wp~ll~~-----L~~~~~--~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~ 198 (1204)
T 3a6p_A 130 ----QHWPDMLIE-----LDTLSK--QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ 198 (1204)
T ss_dssp ----TTCTTHHHH-----HHHHHH--TCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ----ccchHHHHH-----HHHHhc--CCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999997 445555 24455556666666655432210 012235677777777765
Q ss_pred C-------------------CCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 145 S-------------------DNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 145 ~-------------------~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+ ++..++..+++++..+++..+-.+ ....+.+++.+..++.+ +++|.+|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~e 269 (1204)
T 3a6p_A 199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE---QELQLGAAE 269 (1204)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC---TTTHHHHHH
T ss_pred HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC---HHHHHHHHH
Confidence 3 234577889999988887765432 12112466666666654 457777764
No 15
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=1.4e-10 Score=90.69 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~-~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
.+-..|..|..-|...+.... .+.......+-..+...|. + ++..||..++.+++.+++.+-+ .....++.+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~-----~~~~~~~~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~-~~~~~~~~i 99 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHP-----KLENGEYGALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAK-RFSNYASAC 99 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCS-----SBCCCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGG-GGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCC-----CCCCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 567899999999998886521 1112222456667888885 7 8999999999999999987522 223455666
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
+|. ++..+. ++++.+|..++.++..++.. ...+.++|.+...+++.+|.+|..++..++.++...+.
T Consensus 100 lp~-----ll~~l~-d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 100 VPS-----LLEKFK-EKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHH-----HHHGGG-CCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHH-----HHHHHc-CCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 776 667777 88999999999988877642 24678999999999999999999999999998877643
Q ss_pred h--hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 168 Q--ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 168 ~--l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+ ..++.+.+++.+..++.|+ +++||.+|.+
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~ 198 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEP-DPTVRDSSAE 198 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 2 4678899999999999997 9999998864
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.27 E-value=6.1e-11 Score=108.16 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=137.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..++..+....+.++...|+. +-..+.+.+.+ ++..+|..+..+++.+.+..-+. .-...+
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~wp~--------ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQNWPD--------LLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTTCTT--------HHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccHH--------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 567899999999999887764455653 44556777887 78899999999999888765321 112336
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
+.+++. ++++++ ++++.+|..|+.++..++.... ......++++++.+++.++|+++.+|..|+.+++.+++.
T Consensus 173 ~~il~~-----l~~~l~-~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 173 NIMIPK-----FLQFFK-HSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHHHHH-----HTTTTT-CSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHhc-CCCHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 666665 555677 8899999999999876654221 122367889999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 165 FGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 165 ~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.++.+.+|.+.+++.+..+++|+ +++||..|++|
T Consensus 246 ~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~ 279 (852)
T 4fdd_A 246 RMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEF 279 (852)
T ss_dssp CHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHH
Confidence 88888899999999999999997 99999999876
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.7e-09 Score=85.53 Aligned_cols=177 Identities=10% Similarity=0.082 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHh-hcchhhHhhhhccC--HhhHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHhhcCcCCC-CC
Q psy15255 9 RSVEERQMSAVLLRK-IFSTDFIEIYSKLA--VNDQNNLKSQIILLL-QTCDNDNIRRKICDAAAEVARNLIDDAGN-NL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~-~~~~~~~~~~~~l~--~~~~~~ik~~ll~~L-~~e~~~~vR~~~~~~ia~la~~~l~~~~~-~~ 83 (199)
.+-..|.-|..-|.. .+.+. .++. ...-..+-..+.+.| .+ ++..||..++++++.+++.+=..... ..
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~-----~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQT-----KKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGC-----CCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-----CccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 456677777777777 66432 1222 222234566778888 56 89999999999999999776301222 22
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
-..++|. ++..+. +..+.|+..+..++..++....+.....+.+.+++.++..+++++|.+|+.++..++.+++
T Consensus 102 ~~~llp~-----ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 102 VSLVFTP-----LLDRTK-EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHH-----HHHGGG-CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 2445665 666776 7788999988888888777542211012378999999999999999999999999999998
Q ss_pred hhh---hhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 164 IFG---NQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 164 ~~~---~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+ ..+.++. +.+++.+..++.|+ +++||.+|++
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~ 213 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFE 213 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 876 4477888 99999999999997 9999998864
No 18
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.15 E-value=7.2e-10 Score=103.39 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=125.6
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHH
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT--------CDNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~--------e~~~~vR~~~~~~ia~la~ 73 (199)
+++.++ .++.+|.+|+.+|++.++.+ |..++++.+..+|+.+++.+.. ++++.+++++|.+++.+++
T Consensus 67 ~iL~~s-~~~~vR~fAa~~L~~~I~~~----W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k 141 (1073)
T 3gjx_A 67 TILEFS-QNMNTKYYGLQILENVIKTR----WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILK 141 (1073)
T ss_dssp CC---C-CSHHHHHHHHHHHHHHHHHT----GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHHHhh----hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHH
Confidence 345454 78999999999999999999 9999999999999999999975 2467899999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh---------------hhccCChHHHHHH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---------------DAGNNLWPEFLQF 138 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~---------------~~~~~~~~~ll~~ 138 (199)
...+ ..||++++.++ ..++ .++..+...+.++..+...+.+ +.....+|.+++.
T Consensus 142 ~~~P----~~Wp~fi~dLv-----~~~~--~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~l 210 (1073)
T 3gjx_A 142 QEWP----KHWPTFISDIV-----GASR--TSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQL 210 (1073)
T ss_dssp HHTT----TTCTTHHHHHH-----HHHH--HCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCh----hhccHHHHHHH-----HHhC--CCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9876 46999988744 3443 2333344444444444443211 1122467889999
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH-HHhhCCCCCHHHhhhhhc
Q psy15255 139 LFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML-QQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 139 l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l-~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+++++ .++.+...+++++..+.+.++-...- .+.+++.+ ...+. ++++|.+|++
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~-~~~ll~~L~~~~L~---~~~~r~aA~d 268 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLNWIPLGYIF-ETKLISTLIYKFLN---VPMFRNVSLK 268 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH-SSSHHHHHHHHTSS---SHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhc-cchHHHHHHHHhcC---ChHHHHHHHH
Confidence 9888864 58888899999999999887644211 02344444 45553 5578888774
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.14 E-value=5.2e-10 Score=105.62 Aligned_cols=171 Identities=12% Similarity=0.122 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC-----CCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-----GNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~-----~~~~ 83 (199)
.++.+|+.|+..|.+... .++++....++..++..|.+ +++.+|..++.+++.++..+-+.. ....
T Consensus 60 ~~~~vR~~A~~~L~~l~~--------~~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVS--------KVKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 578899999988887753 45667788999999999999 778899999999999998753310 0135
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
|++++|. |+.++...++..+|..+++++..++....+ ....+.+.+++.++..+.++++.+|..|+.+++.+++
T Consensus 131 ~~~llp~-----L~~~l~~~~~~~~~~~al~~l~~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 131 CKKITGR-----LTSAIAKQEDVSVQLEALDIMADMLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHH-----HHHHHSCCSCHHHHHHHHHHHHHHHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-----HHHHHcCCCchHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999998 556776336789999999999998865432 2345789999999999999999999999999999998
Q ss_pred hhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 164 IFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 164 ~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++.+ ...++.+...+ .++++..+|..|++
T Consensus 205 ~~~~~~~~~~l~~l~~~L----~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 205 SCGNIVFVDLIEHLLSEL----SKNDSMSTTRTYIQ 236 (1230)
T ss_dssp TC----CTTHHHHHHHHH----HHTCSSCSCTTHHH
T ss_pred hcCHHHHHHHHHHHHHHh----ccCCchhHHHHHHH
Confidence 877653 22233333333 32223456666553
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.09 E-value=1.4e-09 Score=94.19 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=76.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+..++. ++++.||..+++.++.++....+ ...++.++|.+..+++|+++.+|..|+.+++.+++..+++ .+.+.
T Consensus 169 l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 242 (588)
T 1b3u_A 169 FRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEAL 242 (588)
T ss_dssp HHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHH
Confidence 334555 88999999999999988865432 1346889999999999999999999999999999887653 34456
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+.+...+.|+ +..||.+|++
T Consensus 243 ~~~~l~~~~~d~-~~~vR~~a~~ 264 (588)
T 1b3u_A 243 VMPTLRQAAEDK-SWRVRYMVAD 264 (588)
T ss_dssp THHHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHHHHccCC-CHHHHHHHHH
Confidence 777888888897 9999988874
No 21
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.08 E-value=8.4e-10 Score=102.80 Aligned_cols=176 Identities=14% Similarity=0.221 Sum_probs=122.3
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC---C-----chhHHHHHHHHHHHHHHh
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC---D-----NDNIRRKICDAAAEVARN 74 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e---~-----~~~vR~~~~~~ia~la~~ 74 (199)
++.++ .++.+|.+|+.+||+.++.+ |..++++.+..+|+.+++.+... + .+.+|+++|.+++.+++.
T Consensus 56 iL~~s-~~~~vR~faa~~Lk~~I~~~----W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~ 130 (1023)
T 4hat_C 56 ILQFS-TNPQSKFIALSILDKLITRK----WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1023)
T ss_dssp HHHHC-CCHHHHHHHHHHHHHHHHHH----GGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHHHHhh----hhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 34444 68999999999999999999 99999999999999999999763 1 467899999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh---------------hhccCChHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---------------DAGNNLWPEFLQFL 139 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~---------------~~~~~~~~~ll~~l 139 (199)
..+ ..||++++. ++..++ .++..+...+.++..+...+.+ +......|.+++.+
T Consensus 131 ~~p----~~Wp~~l~d-----L~~~l~--~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll 199 (1023)
T 4hat_C 131 EWP----QNWPEFIPE-----LIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1023)
T ss_dssp HTT----TTCTTHHHH-----HHHHTT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCh----hhchHHHHH-----HHHHhc--CCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 579999987 445554 2333333334444443333221 01123467888888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH-HhhCCCCCHHHhhhhhc
Q psy15255 140 FQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ-QCLLPPNPYSVQALQLK 198 (199)
Q Consensus 140 ~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~-~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+++ .++.+...+++++...+..++-...- .+.+++.+. .++. ++++|.+|++
T Consensus 200 ~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~-~~~ll~~l~~~~L~---~~~~r~~A~e 256 (1023)
T 4hat_C 200 FQVLEQGASSSLIVATLESLLRYLHWIPYRYIY-ETNILELLSTKFMT---SPDTRAITLK 256 (1023)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH-SSSHHHHHHTHHHH---SHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc-chhHHHHHHHHHcC---CHHHHHHHHH
Confidence 888864 47788899999999998876543210 023444444 4553 3457766653
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=8.9e-08 Score=74.66 Aligned_cols=137 Identities=10% Similarity=0.057 Sum_probs=108.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
+.+.+.+ .+-..|+.+...++.+++..-+ -......++++. +...+..+++..||..++.++..++..+.+ .
T Consensus 20 l~~~l~s-~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~-----L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~ 91 (242)
T 2qk2_A 20 FYDKLEE-KKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSA-----LKKVITKDSNVVLVAMAGKCLALLAKGLAK-R 91 (242)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHH-----HHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-G
T ss_pred HHhhhcc-CCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHH-----HHHHhccCCCHHHHHHHHHHHHHHHHHHhh-h
Confidence 6677777 8999999999999999876211 112445777765 445663378999999999999999987654 2
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
...+++.++|.++..+.|+++.+|++|..++..+++..+ .+.+++.+...+++. ++.||..++.|
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~-~~~vr~~~l~~ 156 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK-NPSVKSETALF 156 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 356889999999999999999999999999999987642 355667778888997 99999988753
No 23
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.87 E-value=6.8e-09 Score=78.77 Aligned_cols=174 Identities=17% Similarity=0.099 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|+++...+.+.. .. -.....-..+++.|.+ +++.+|..++.+++.++...-.. ...+..
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~-~~---i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQI-QA---VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHH-HH---HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH-HH---HHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 678999999999999875431111 10 1112345678888988 78999999999999887321000 001122
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|. |+.++. ++++.+|..++.++..++....+....-.-...++.|.+.+.++++.+|+.|+.+++.++..
T Consensus 99 ~~---------L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 99 PA---------LVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HH---------HHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH---------HHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22 556777 78899999999999988742221000000134788999999999999999999999999875
Q ss_pred hhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-++..... ....++.+...+.++ +++||..|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~ 202 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQE 202 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHH
Confidence 33322211 235677788888887 9999988864
No 24
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.81 E-value=2e-07 Score=86.61 Aligned_cols=175 Identities=9% Similarity=0.127 Sum_probs=114.9
Q ss_pred cccccCC-CHHHHHHHHHHHHhhcchhhHhhhhccCHh----hHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHH
Q psy15255 3 IIQDAGR-SVEERQMSAVLLRKIFSTDFIEIYSKLAVN----DQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 3 ~~~~~~~-~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~----~~~~ik~~ll~~L~~e----~~~~vR~~~~~~ia~la~ 73 (199)
++.++.. ++.+|.+|+.+|++.++ .++++ .+.++|+.+++.+... ..+.||+|+|.+++.+++
T Consensus 48 iL~~~~~~~~~vr~fa~~~L~~~I~--------~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 48 IFSEKTKYKPSTRLICLQTLSEKVR--------EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp HTTCTTTSCHHHHHHHHHHHHHHHH--------HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHH--------hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 4445433 79999999999999986 58889 9999999999999962 467899999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-----------------c-cCChHHH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-----------------G-NNLWPEF 135 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-----------------~-~~~~~~l 135 (199)
...+ ..||++++. ++.+++..+....-...+.++..|...+.+.. . .+..+.+
T Consensus 120 ~~~p----~~Wp~~i~~-----l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i 190 (980)
T 3ibv_A 120 QLYP----SNWNDFFAS-----LQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDI 190 (980)
T ss_dssp HHTT----TTCTTHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhCc----ccCchHHHH-----HHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHH
Confidence 9765 689999887 45566522211111112222222222211100 0 0112233
Q ss_pred HHHHH----HHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 136 LQFLF----QCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 136 l~~l~----~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+..+ ++.+++++.++..++++++..+..++-.+.-. +.+++.+..++.+ +++|.+||+
T Consensus 191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~---~~~r~~A~e 253 (980)
T 3ibv_A 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI---EELRCAACE 253 (980)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS---HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC---hHHHHHHHH
Confidence 33333 33344788899999999999998776553211 4566667777765 578888875
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.73 E-value=1.6e-08 Score=84.91 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQN-NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~-~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
.++.+|..|+..||+.++... ......-.+. .+...|++.|.+++++.+|..++.+++.++...-+....-..+.+
T Consensus 32 ~~~~~r~~A~~~L~~l~~~~~---~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 108 (450)
T 2jdq_A 32 KSPEQQLSATQKFRKLLSKEP---NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGA 108 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHSSS---SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhcCCC---CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC
Confidence 678999999999999875320 1111111223 567788899999558999999999999988521000000001223
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~ 166 (199)
++. |+.++. ++++.+|..++.++..++....+....-.-...++.+.+.+.+ +++.+|..|+.+++.++....
T Consensus 109 i~~-----L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 109 VPI-----FIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp HHH-----HHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHH-----HHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 443 556777 7889999999999998875321100000002457778888885 799999999999999996541
Q ss_pred hh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 167 NQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 167 ~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+. -......+++.+...+.++ |++|+..|+
T Consensus 183 ~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~ 213 (450)
T 2jdq_A 183 PPPEFAKVSPCLNVLSWLLFVS-DTDVLADAC 213 (450)
T ss_dssp SCCCGGGTGGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHccC-CHHHHHHHH
Confidence 11 1122245566677778886 889988775
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.73 E-value=5.6e-08 Score=75.62 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++++|..|+-.|++.++.+.+. ... -....+-..|++.|.+ +++.+|..++.+++.++... ......+.
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~-~~~---~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~ 93 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQ-IQA---VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGG-----NEQIQAVI 93 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHH-HHH---HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSC-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCch-HHH---HHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCC-----HHHHHHHH
Confidence 56788999999999887653111 111 1222455678888988 67999999999988887421 01111111
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
..-.=..|+.++. ++++.+|..++.++..++.........-.-...+|.+.+++.++++.+|+.|+.+++.++..-+..
T Consensus 94 ~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 94 DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 1000112556777 688999999999998876422110000011247888999999999999999999999998754333
Q ss_pred hHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.... ...+++.+...+.++ +++|+..|+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 202 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSP-NEQILQEALW 202 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCS-SHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCC-CHHHHHHHHH
Confidence 2221 135667778888887 9999988763
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.71 E-value=1.7e-07 Score=72.44 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|++....+.+. ... -....+-..|++.|.+ +++.+|..++.+++.++... ++..
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~-~~~---~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~---------~~~~ 79 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASA-IKA---IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP---------DEAI 79 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHH-HHH---HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHH-HHH---HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC---------hHHH
Confidence 45899999999999998654211 111 1122455678888988 77999999999998887431 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...++ ..++.++. ++++.++..++.++..++....+....-.-...++.+.+.+.++++.+|..|+.+++.++..
T Consensus 80 ~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11111 12556777 78899999999999888742221000001124688889999999999999999999999875
Q ss_pred hhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+...... ...+++.+...+.++ +++||..|+.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 192 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAAR 192 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHH
Confidence 43322111 235677788888887 9999988763
No 28
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.71 E-value=8.7e-07 Score=70.14 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.+.-.+ .....++..|.+ +++.+|..++..++.+.. .....+.++
T Consensus 35 ~~~~vr~~A~~~L~~~~~~---------------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~------~~~~~~~l~ 92 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ---------------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKI------CKKCEDNVF 92 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH---------------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCC------CTTTHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc---------------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcc------ccccchHHH
Confidence 4677787777777665321 123345666676 677777777766665531 112234444
Q ss_pred HHHHHHHHH-HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh---
Q psy15255 89 QNNLKSQII-LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI--- 164 (199)
Q Consensus 89 ~~~ik~~ll-~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~--- 164 (199)
+. +. .++. ++++.+|..++.+++.+..... ...+.+++.+.+.++|+++.+|..|+.+++.+...
T Consensus 93 ~~-----L~~~~~~-d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~ 161 (280)
T 1oyz_A 93 NI-----LNNMALN-DKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATI 161 (280)
T ss_dssp HH-----HHHHHHH-CSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCH
T ss_pred HH-----HHHHHhc-CCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHH
Confidence 32 11 1223 6677777777777766553211 12345566666666666666666666666654321
Q ss_pred ------hhhh---hH--------H---HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 165 ------FGNQ---ES--------T---YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 165 ------~~~~---l~--------~---~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+. .. . ....+.+.+...+.|+ ++.||..|+
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~-~~~vR~~A~ 213 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK-NEEVRIEAI 213 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 0000 00 0 0123445566677776 788887775
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.69 E-value=2.2e-07 Score=71.81 Aligned_cols=174 Identities=15% Similarity=0.134 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.++...+.+.. ..+ .....-..++..|.+ +++.+|..++.+++.++... ++..
T Consensus 56 ~~~~v~~~a~~~L~~l~~~~~~~~-~~~---~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~---------~~~~ 121 (252)
T 4hxt_A 56 TDSEVQKEAARALANIASGPDEAI-KAI---VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP---------DEAI 121 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-HHH---HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHH-HHH---HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC---------HHHH
Confidence 458888888888888875421110 000 112345568888887 88999999999999887321 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...++ ..|+.++. ++++.++..++.++..++....+....-.-...++.+.+++.++++.+|..|+.+++.++..
T Consensus 122 ~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 11111 12556777 78899999999999888753211000000134788999999999999999999999999874
Q ss_pred hhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-+...... ...+++.+...++++ +++||..|+.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 234 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQR 234 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHH
Confidence 33322222 235677888888887 9999988863
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.69 E-value=2.6e-07 Score=71.78 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|.++...+.+.. ..+ .....-..+++.|.+ +++.+|..++.+++.++...-.. ...+
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~-~~i---~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-- 138 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQI-QAV---IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAG-- 138 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-HHH---HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHH-HHH---HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCC--
Confidence 358889999999998876431111 000 112345678888888 88999999999998886331000 0011
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.++. |+.++. ++++.++..++.++..++....+....-.-...++.+.+.+.++++.+|+.|+.+++.++..
T Consensus 139 --~i~~-----L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 139 --ALPA-----LVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp --HHHH-----HHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred --CHHH-----HHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 1222 556777 78899999999999888752211000000034678889999999999999999999999854
Q ss_pred hhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-+....... ..+++.+...++++ +++||..|+.
T Consensus 211 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~ 244 (252)
T 4db8_A 211 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQE 244 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHH
T ss_pred CHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHH
Confidence 333222222 34677888899997 8999988863
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.67 E-value=5.5e-07 Score=70.97 Aligned_cols=143 Identities=6% Similarity=-0.010 Sum_probs=111.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHHH-HHHhhcCcCC--CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAE-VARNLIDDAG--NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~-la~~~l~~~~--~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
+.+.+.+ ++..-|+.+...++. ++... +.-. ...+.++++. |.+.+..+.+..+|..|+++++.++..+.
T Consensus 21 f~~~l~s-~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~-----L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 21 FQERITS-SKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGI-----YGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHH-----HHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhc-CCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHH-----HHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 5666777 888899998888888 77542 1111 3456777776 44577448999999999999999998775
Q ss_pred -hhhcc-CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 125 -DDAGN-NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 125 -~~~~~-~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+ ... .+...++|.++..+.|..+.||+++..++..+++..++.. .++.+.+++.+..+++++ ++.||.+++.|
T Consensus 94 ~~-~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~ 169 (249)
T 2qk1_A 94 TP-GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQL 169 (249)
T ss_dssp TT-TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred cc-cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 3 234 6778899999999999999999999999999999875432 123677888888899998 99999998764
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.66 E-value=1.9e-07 Score=78.26 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.+....+.+.. . .-....+-..++..|.+.++..+|..++.+++.+++..-+......-..++
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~-~---~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 194 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCR-D---YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHH-H---HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHH-H---HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 467888888888888765431000 0 000123455678888865789999999999999986531111111124455
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+. |+.++. ++++.++..++.++..++....+....-.-..+++.+.+++.++++.+|..|+.+++.++...+..
T Consensus 195 ~~-----L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 268 (450)
T 2jdq_A 195 NV-----LSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ 268 (450)
T ss_dssp HH-----HHHHTT-CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HH-----HHHHHc-cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHH
Confidence 55 455777 778899999999888876432110000001246788888889999999999999999998754433
Q ss_pred hHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..... ..+++.+...+.++ ++.||..|+.
T Consensus 269 ~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~ 298 (450)
T 2jdq_A 269 TQVILNCSALQSLLHLLSSP-KESIKKEACW 298 (450)
T ss_dssp HHHHHTTTHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHCccHHHHHHHHcCC-CHHHHHHHHH
Confidence 22222 24677788889997 9999988863
No 33
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.65 E-value=5e-07 Score=68.05 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=44.3
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.++. ++++.||..++.+++.+. -++.++.|.+.+.|+++.+|..|+.+++.+.. ....
T Consensus 114 ~~l~-d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~ 171 (201)
T 3ltj_A 114 KALK-DEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVR 171 (201)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHHT-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHH
Confidence 3444 556666666555554431 12345555666666666677776666666521 2234
Q ss_pred HHHHHhhCCCCCHHHhhhhhc
Q psy15255 178 QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+...++|+ ++.||..|.+
T Consensus 172 ~~L~~~l~d~-~~~vr~~A~~ 191 (201)
T 3ltj_A 172 AAMEKLAETG-TGFARKVAVN 191 (201)
T ss_dssp HHHHHHHHHC-CHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHH
Confidence 4455556676 7888877753
No 34
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.65 E-value=6.5e-07 Score=67.91 Aligned_cols=110 Identities=11% Similarity=0.130 Sum_probs=65.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
|+..|.+ +++.||..++..++.+.. ++.++. |+.++. ++++.||..++.+++.+.
T Consensus 86 L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~~~-----L~~~l~-d~~~~vr~~a~~aL~~~~------- 140 (211)
T 3ltm_A 86 LIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEP-----LIKALK-DEDWFVRIAAAFALGEIG------- 140 (211)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHH-----HHHHTT-CSSHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHH-----HHHHHh-CCCHHHHHHHHHHHHHcC-------
Confidence 4444555 566666666666655521 112222 334555 677777777666665432
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-++.++.|.+.++|+++.+|..|+.+++.+.. +...+.+...++|+ ++.||..|.
T Consensus 141 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~ 195 (211)
T 3ltm_A 141 ----DERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAV 195 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHH
Confidence 13455666667777777888888877777632 23444555566776 888888775
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.63 E-value=3e-07 Score=80.88 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.++.+-+.+....+ ++....+-+.+.+-|.+ +++.+|..+-.++|.+. ....++.+.
T Consensus 61 ~~~~~Krl~yl~l~~~~~~~---------~e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~-------~~~~~~~l~ 123 (591)
T 2vgl_B 61 DNLELKKLVYLYLMNYAKSQ---------PDMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIR-------VDKITEYLC 123 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHS---------HHHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC-------SGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHcccC---------chHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC-------hHHHHHHHH
Confidence 56788888888777765432 22223344556666777 88888887766666553 245677777
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+. +..++. ++++.||..|+.++..+.... ...++ .+++.+.+++.|+++.||.+|+.+++.+++..+
T Consensus 124 ~~-----l~~~L~-d~~~~VRk~A~~al~~i~~~~-----p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 124 EP-----LRKCLK-DEDPYVRKTAAVCVAKLHDIN-----AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HH-----HHHHSS-CSCHHHHHHHHHHHHHHHHSS-----CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HH-----HHHHcC-CCChHHHHHHHHHHHHHHhhC-----hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 65 556777 889999999999998887632 23454 588999999999999999999999999876432
Q ss_pred hh---------hH-----------------------------HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 167 NQ---------ES-----------------------------TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 167 ~~---------l~-----------------------------~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+. +. +....+++.+..++++. ++.|+.+|++
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~~~V~~ea~~ 261 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHA-NSAVVLSAVK 261 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSS-TTHHHHHHHH
T ss_pred CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCC-ChHHHHHHHH
Confidence 11 10 11234556666778886 8889988875
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.60 E-value=1.2e-06 Score=66.52 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|.-.|.+.-.. .....|++.|.+ +++.||..++..++.+.. ++.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~---------------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~ 83 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE---------------RAVEPLIKALKD-EDAWVRRAAADALGQIGD-----------ERAV 83 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG---------------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----------GGGH
T ss_pred CCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-----------HHHH
Confidence 4566777766666654321 122346778887 789999998888887741 2223
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+. |+.++. ++++.+|..++..++.+. -++.++.+.+++.|+++.+|..|+.+++.+...
T Consensus 84 ~~-----L~~~l~-~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 142 (211)
T 3ltm_A 84 EP-----LIKALK-DEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 142 (211)
T ss_dssp HH-----HHHHTT-CSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred HH-----HHHHHc-CCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----
Confidence 32 344666 889999999888876542 134567778888999999999999999987431
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+.+...++|+ ++.||..|++
T Consensus 143 ------~~~~~L~~~l~d~-~~~vr~~a~~ 165 (211)
T 3ltm_A 143 ------RAVEPLIKALKDE-DGWVRQSAAD 165 (211)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 1334556677887 9999988863
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.60 E-value=8.7e-07 Score=71.62 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhhcch-hhHhhhhccCHhhHHHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 10 SVEERQMSAVLLRKIFST-DFIEIYSKLAVNDQNNLKSQIIL-LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~-~~~~~~~~l~~~~~~~ik~~ll~-~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
+.+.|..|.-.|.+++.. ++...+.+. ..-..++. .|.+ +++.||..++.++|.++.+. |+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~------G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n---------~~~ 116 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQL------SGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNV---------AAI 116 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHT------THHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTC---------HHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHc------CCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCC---------HHH
Confidence 345677777777777754 322212111 12235677 7877 89999999999999998542 111
Q ss_pred HHHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 88 LQNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 88 l~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
-...++ ..|+.++..+++..+|..|+.+++.++....+. ...+ ...+|.|..++++++..+|..|+.+++++
T Consensus 117 ~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L 194 (296)
T 1xqr_A 117 QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG--LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 194 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH--HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111111 126667775568899999999999887533220 0011 13677888888899999999999999999
Q ss_pred hHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+..-++...... ..+++.+...+.++ |++|+..|+
T Consensus 195 ~~~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al 230 (296)
T 1xqr_A 195 LVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVL 230 (296)
T ss_dssp HHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHH
T ss_pred HhCChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHH
Confidence 876333322222 35666777788887 888987765
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.57 E-value=3e-07 Score=69.50 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
......|...|.+ +++.+|..++.+++.++... ......+...-.=..|+.++. ++++.+|..++.++..++.
T Consensus 11 ~~~~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 11 GSELPQMVQQLNS-PDQQELQSALRKLSQIASGG-----NEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIAS 83 (210)
T ss_dssp --CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhcC-CCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhc
Confidence 3444567788887 88999999999999987432 011111110000112556777 7789999999999988763
Q ss_pred HhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+....-.....+|.+.++++++++.+|+.|+.+++.++...++..... ...+++.+...+.++ +++|+..|+.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 160 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALW 160 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHH
Confidence 221100000112367888889999999999999999999986543332222 235677788888987 9999988863
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.53 E-value=3.2e-06 Score=66.84 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=43.6
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.++. ++++.||..++..++.+. ..-+..++.+.+.+.|+++.+|..|+.+++.+.. ...+
T Consensus 166 ~~l~-d~~~~vr~~a~~aL~~~~---------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~ 225 (280)
T 1oyz_A 166 NLLK-DPNGDVRNWAAFAININK---------YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVL 225 (280)
T ss_dssp HHHT-CSSHHHHHHHHHHHHHHT---------CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGH
T ss_pred HHHc-CCCHHHHHHHHHHHHhhc---------cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----------HhhH
Confidence 3444 555555555555544321 1234566677777777777777777777776541 1233
Q ss_pred HHHHHhhCCCCCHHHhhhhh
Q psy15255 178 QMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+...++|+ + ||..|.
T Consensus 226 ~~L~~~l~d~-~--vr~~a~ 242 (280)
T 1oyz_A 226 SVLCDELKKN-T--VYDDII 242 (280)
T ss_dssp HHHHHHHTSS-S--CCHHHH
T ss_pred HHHHHHhcCc-c--HHHHHH
Confidence 4455566775 4 776654
No 40
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.52 E-value=1.2e-06 Score=81.78 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=102.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhcc--------cHHHHHHHHHHH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCD--------NDNIRRKICDAA 116 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~~--------~~~vr~~a~~~i 116 (199)
+...|.++.+..+|.. ++.++++.+. ..|..+ -+..+|+.++..+...+ ++.+|++.+.++
T Consensus 53 l~~iL~~s~~~~vr~~----aa~~Lk~~i~----~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~i 124 (1049)
T 3m1i_C 53 ADQILQFSTNPQSKFI----ALSILDKLIT----RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTL 124 (1049)
T ss_dssp HHHHHHHCSCHHHHHH----HHHHHHHHHH----HTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHH----HHHHHHHHHH----hhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHH
Confidence 4555555567788885 5555555554 356554 56788999999887433 478999999999
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----------------hhHHHHHHHHHHH
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----------------QESTYLVVIKQML 180 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----------------~l~~~~~~l~~~l 180 (199)
+.|+....+ ..||++++.++++++ +++..++.++.++..++|.+.+ .+..+.+.|...+
T Consensus 125 a~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~ 199 (1049)
T 3m1i_C 125 VQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1049)
T ss_dssp HHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999987654 589999999999996 6677899999999999987652 2445567777778
Q ss_pred HHhhCCCCCHHHhhhhhc
Q psy15255 181 QQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 181 ~~~l~d~~~~~Vr~~A~~ 198 (199)
..+++++.+++++..|++
T Consensus 200 ~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 200 FQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 888876546778876653
No 41
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.50 E-value=2.9e-06 Score=78.43 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=87.7
Q ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCCC-----CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 47 QIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAGN-----NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 47 ~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~~-----~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
.|++.+.++ .+..+|. .++.++|+.+...+. ...|+=.+..||+.++..+.. +.+.+|++++.+++.|+
T Consensus 39 ~L~~il~~~~~~~~vR~----~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~-~~~~ir~~l~~~ia~ia 113 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRL----AGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS-LPNNLQVQIGEAISSIA 113 (960)
T ss_dssp HHHHHHHCTTSCHHHHH----HHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHH----HHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence 577777663 3456666 678888888754332 234555778899999999984 45899999999999999
Q ss_pred HHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
....+ +.||++++.++++++++++..+++++.++..+++...
T Consensus 114 ~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 114 DSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87653 5899999999999998888899999999999998543
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.48 E-value=4.6e-07 Score=68.26 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=68.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+ +++.||..++..++.+.. ++.++. |+.++. ++++.+|..++..++.+.
T Consensus 49 ~L~~~l~~-~~~~vr~~a~~~L~~~~~-----------~~~~~~-----L~~~l~-d~~~~vr~~a~~aL~~~~------ 104 (201)
T 3ltj_A 49 PLIKALKD-EDAWVRRAAADALGQIGD-----------ERAVEP-----LIKALK-DEDGWVRQSAAVALGQIG------ 104 (201)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHH-----HHHHTT-CSSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHhhCC-----------HHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhC------
Confidence 34555555 566666666665555421 112222 334565 677778777777665432
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-++.++.+.+++.|+++.+|..|+.+++.+.. ....+.+...+.|+ ++.||..|++
T Consensus 105 -----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~ 160 (201)
T 3ltj_A 105 -----DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAAD 160 (201)
T ss_dssp -----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-SHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 13456666777788888888888888887642 12334556677887 8999988763
No 43
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.43 E-value=1.2e-06 Score=75.65 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChH---
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--- 85 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wp--- 85 (199)
.++.+|..|+-.|.++...+.+.. ..+ ....+-..|+..|.+ +++.+|..++.+++.+++..-+ ...+.
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~-~~~---~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~---~~~~~~~~ 256 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYR-DYV---LQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKP---QPDWSVVS 256 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHH-HHH---HHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSS---CCCHHHHG
T ss_pred CCHHHHHHHHHHHHHHhCCCccch-HHH---HHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCC---CCcHHHHH
Confidence 467788888888888764321000 000 111344567888887 8899999999999988854311 11111
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
.+++. |+.++. ++++.++..++.++..++....+....-....+++.+.+++.++++.+|..|+.+++.++...
T Consensus 257 ~~l~~-----L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 257 QALPT-----LAKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGHHH-----HHHHTT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHH-----HHHHHc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 22443 555776 778899999999998887432110000011246788888899999999999999999998654
Q ss_pred hhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 166 GNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 166 ~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....... ..+++.+...+.++ ++.||.+|+.
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~ 363 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACW 363 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHH
Confidence 33222222 35677888899997 9999988873
No 44
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.43 E-value=8.2e-07 Score=76.66 Aligned_cols=174 Identities=17% Similarity=0.067 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|.+....+.+.. . .-....+-..|++.|.+ +++.+|..++.+++.++...-.. ...+.
T Consensus 143 ~~~~v~~~A~~~L~~l~~~~~~~~-~---~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~- 216 (530)
T 1wa5_B 143 QPEMLQLEAAWALTNIASGTSAQT-K---VVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA- 216 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-H---HHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHH-H---HHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCc-
Confidence 367888888888888876431100 0 00012335678888888 89999999999999998431000 00111
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
++. |+.++. ++++.++..++.++..++....+.........++|.|.+++.++++.+|..|+.+++.++..
T Consensus 217 ---l~~-----L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 217 ---MEP-----ILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp ---HHH-----HHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred ---HHH-----HHHHhc-cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 222 555676 68889999999998887743211000012246788999999999999999999999999865
Q ss_pred hhhhhHHHHH-HHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTYLV-VIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~~~-~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.++......+ .+++.+...+.++ +++||..|+.
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~ 321 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR 321 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHH
Confidence 4433333332 5677788888887 8999988763
No 45
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.38 E-value=1.9e-06 Score=74.26 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++..|..|+..|++.++.+.. +....-....+-..|++.|.+.+++.+|..++.+++.++... ++..
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~---~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~---------~~~~ 153 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERS---PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT---------SENT 153 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSS---CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCC---chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC---------HHHH
Confidence 5688899999999998764310 001111223455678888988555999999999999998531 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHh-cCCCHHHHHHHHHHHHhh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCA-NSDNTTLKESALRLFTSV 161 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i 161 (199)
..+++ ..|+.++. ++++.+|..++.++..|+....+. .... ...++.|++++ .++++.++..|+.+++.+
T Consensus 154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~--~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKC--RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHH--HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhh--HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11111 12666777 688999999999999887532210 0000 13567778888 577999999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 162 ~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+...+..-......+++.+...+.++ +++|+..|+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~ 266 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACW 266 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 87643322233456677778888887 9999988763
No 46
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.31 E-value=2.3e-06 Score=73.72 Aligned_cols=173 Identities=16% Similarity=0.085 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC----CCCChH
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA----GNNLWP 85 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~----~~~~Wp 85 (199)
++.+|..|+-.|.+....+.+.. . .-.....-..|+..|.+ +++.||..++.+++.|+...-... ..+.
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~-~---~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~-- 203 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENT-K---VVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGA-- 203 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHH-H---HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHhCCCHHHH-H---HHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCc--
Confidence 47888888888888876421110 0 00111345568888888 899999999999999974310000 0111
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
++. |+.++..++++.++..++.++..++..... ........++|.|.+++.++++.++..|+.+++.++...
T Consensus 204 --l~~-----Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 204 --LLP-----LLAQLNEHTKLSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp --HHH-----HHHTCCTTCCHHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred --HHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 222 555664367889999999999887753211 001123568999999999999999999999999998654
Q ss_pred hhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 166 GNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 166 ~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....... ..+++.+...+.++ ++.|+..|+.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~ 308 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALR 308 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHH
Confidence 43322222 25677888889997 8999988763
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.27 E-value=2.8e-05 Score=71.53 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=99.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC--DNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~--~~~~vr~~a~~~i~~i~~~ 122 (199)
++..|....+..||.. ++.++++.+. ..|..+ -...+|+.++..+... ..+.+|++.+.+++.|+..
T Consensus 62 ~~~lL~~~~~~~vr~~----aa~~L~~~i~----~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~ 133 (963)
T 2x19_B 62 SWQLLQPDKVPEIQYF----GASALHIKIS----RYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALS 133 (963)
T ss_dssp HHHHTSTTSCHHHHHH----HHHHHHHHHH----HCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCchHHHHH----HHHHHHHHHH----hCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4445555567788875 4555555553 356655 5677888899988732 3588999999999999987
Q ss_pred hHhhhccCChHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhhhHhhh-------------hhhHHHHHHHHHHHHHhh
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANS-----DNTTLKESALRLFTSVPEIFG-------------NQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~-----~~~~vr~~a~~~l~~i~e~~~-------------~~l~~~~~~l~~~l~~~l 184 (199)
..+ ..||++++.+.+++++ +++..++.++.++..++|.+. +.+..+.+.+.+++..++
T Consensus 134 ~~p----~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l 209 (963)
T 2x19_B 134 MMP----DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLL 209 (963)
T ss_dssp HTT----TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHH
T ss_pred hCc----cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 4699999999999976 367789999999999997541 123456778888888888
Q ss_pred CCCCCH-HHhhhhh
Q psy15255 185 LPPNPY-SVQALQL 197 (199)
Q Consensus 185 ~d~~~~-~Vr~~A~ 197 (199)
+++.++ .++..++
T Consensus 210 ~~~~~~~~~~~~~l 223 (963)
T 2x19_B 210 QQPSSPSCVRQKVL 223 (963)
T ss_dssp SCTTCCHHHHHHHH
T ss_pred hCCCCchHHHHHHH
Confidence 875332 3555444
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.18 E-value=6.7e-06 Score=75.93 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=91.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC--DNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~--~~~~vr~~a~~~i~~i~~~ 122 (199)
++..|....+..||..++ .++++.+. ..|..+ -...+|+.++..+... ..+.+|++.+.+++.|+..
T Consensus 44 ~~~lL~~~~~~~vr~~aa----~~L~~~i~----~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~ 115 (971)
T 2x1g_F 44 SWQLMQLGKSQEVQFFGA----ITLHSKLM----KHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVH 115 (971)
T ss_dssp HHHHTCTTSCHHHHHHHH----HHHHHHHH----HCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHH----HHHHHHHH----ccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 456666557888888544 44555443 346655 5678899999988743 2688999999999999986
Q ss_pred hHhhhccCChHHHHHHHHHHhcCC------CHHHHHHHHHHHHhhhHhhh------------hhhHHHHHHHHHHHHHhh
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSD------NTTLKESALRLFTSVPEIFG------------NQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~------~~~vr~~a~~~l~~i~e~~~------------~~l~~~~~~l~~~l~~~l 184 (199)
.. . .||++++.+++.++++ ++..++.++.++..++|.+. +.+..+.+.+.+++..++
T Consensus 116 ~~----p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l 190 (971)
T 2x1g_F 116 ML----G-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYL 190 (971)
T ss_dssp TT----C-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cc----c-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 2 8999999999999865 67789999999999997532 223445667777777776
Q ss_pred CCCCCH-------HHhhhhh
Q psy15255 185 LPPNPY-------SVQALQL 197 (199)
Q Consensus 185 ~d~~~~-------~Vr~~A~ 197 (199)
++.+++ +++..|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 191 KLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHTTSCCCHHHHHHHHHHH
T ss_pred hcccCCCCCccchhHHHHHH
Confidence 542122 5666654
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.17 E-value=8.9e-06 Score=71.46 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=92.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
+++++.+ ++..+|+...-.+..+++. -||+... +-+.+.+-++ ++++.+|..|+.+++.+..
T Consensus 54 vi~l~~s-~~~~~Krl~yl~l~~~~~~---------~~e~~~l-~~n~l~kdL~-~~n~~ir~~AL~~L~~i~~------ 115 (591)
T 2vgl_B 54 VVNCMQT-DNLELKKLVYLYLMNYAKS---------QPDMAIM-AVNSFVKDCE-DPNPLIRALAVRTMGCIRV------ 115 (591)
T ss_dssp HHHTTSS-SCHHHHHHHHHHHHHHHHH---------SHHHHHT-THHHHGGGSS-SSSHHHHHHHHHHHHTCCS------
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHHccc---------CchHHHH-HHHHHHHHcC-CCCHHHHHHHHHHHHcCCh------
Confidence 4455555 7788887666666666543 2454321 1133444555 7899999998887776531
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...++.+++.+.+++.|+++.||..|+.++..+....++.+.. +.+.+.+..++.|+ |+.|+..|+
T Consensus 116 -~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~-d~~V~~~A~ 181 (591)
T 2vgl_B 116 -DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADS-NPMVVANAV 181 (591)
T ss_dssp -GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCS-CHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCC-ChhHHHHHH
Confidence 2467889999999999999999999999999999855443332 46778888899997 999998885
No 50
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.15 E-value=1.2e-07 Score=67.08 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+...|.+ +++.+|..++...+.+. ....|. |+.++. ++++.+|..++..++.+.
T Consensus 15 ~~l~~~L~~-~~~~vR~~A~~~L~~~~--------~~~~~~---------L~~~L~-d~~~~vR~~A~~aL~~~~----- 70 (131)
T 1te4_A 15 VPRGSHMAD-ENKWVRRDVSTALSRMG--------DEAFEP---------LLESLS-NEDWRIRGAAAWIIGNFQ----- 70 (131)
T ss_dssp ------CCS-SCCCSSSSCCSSTTSCS--------STTHHH---------HHHGGG-CSCHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhC--------chHHHH---------HHHHHc-CCCHHHHHHHHHHHHhcC-----
Confidence 346677777 77778876554444321 111122 445666 788899988777765432
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-+..++.|..++.|+++.||..|+.+++.+.. ....+.+...++|+ |+.||..|+
T Consensus 71 ------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~A~ 125 (131)
T 1te4_A 71 ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKVAV 125 (131)
T ss_dssp ------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHH
Confidence 14557777777888999999999999988652 12344555667786 888998775
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.13 E-value=5.6e-05 Score=60.95 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|.+....+......-+ ....-..|++.|.++++..+|++++.+++.+++..-+. ...+.+
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv----~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVL----GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHH----HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHH----HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 5789999999999998765421111111 11234568888887678899999999999998643110 001223
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
|- |+.++. ++++.++..++-++..++....+. .... ...++.|+.++.++++.+|+.|+.+++.++
T Consensus 170 ~~---------L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~--~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 170 SV---------LMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEH--KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HH---------HHHHHH-SSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HH---------HHHHHc-CCCHHHHHHHHHHHHHHHhCChHH--HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 32 445677 789999999999999988653220 1111 237788899999999999999999999998
Q ss_pred Hhh
Q psy15255 163 EIF 165 (199)
Q Consensus 163 e~~ 165 (199)
...
T Consensus 238 ~~~ 240 (296)
T 1xqr_A 238 TDF 240 (296)
T ss_dssp TTC
T ss_pred hCC
Confidence 763
No 52
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00014 Score=57.66 Aligned_cols=142 Identities=8% Similarity=0.042 Sum_probs=97.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChH-HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP-EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wp-eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
+-..+.| .+..|..+.++++..++...-...+..... ......+...+-+++. ++.+.+|..+.+++..++..
T Consensus 60 lkk~l~D-sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~---- 133 (278)
T 4ffb_C 60 FAQYITD-SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGL---- 133 (278)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHT----
T ss_pred HHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHh----
Confidence 3445666 888999999999988887653321111110 1111111111113444 67788888888888776642
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh---HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE---STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l---~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...-..+++.+...+++.+|.+|..++..+..+++.++... .+.+..+...+..++.|+ |++||.+|.+
T Consensus 134 --~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~-~~~VR~aA~~ 205 (278)
T 4ffb_C 134 --DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG-DRNVRSQTMN 205 (278)
T ss_dssp --SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS-SHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC-cHHHHHHHHH
Confidence 22445678888889999999999999999999998877552 455667777888899998 9999999874
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.01 E-value=7e-05 Score=66.18 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.+..+-+.+.+.. .++.--.+-+.+.+-|.+ +++.+|..+..++|.+.... .-+.+.
T Consensus 82 ~~~~~Krl~Yl~~~~~~~~---------~~e~~~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~~~-------~~~~l~ 144 (618)
T 1w63_A 82 QKFTDKRIGYLGAMLLLDE---------RQDVHLLMTNCIKNDLNH-STQFVQGLALCTLGCMGSSE-------MCRDLA 144 (618)
T ss_dssp SSHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCCHH-------HHHHHH
T ss_pred CchHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCCHH-------HHHHHH
Confidence 3444555555544444432 244445667778888888 99999999999999885221 123334
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
+. +..++. ++++.||++|+.++..+....++ ..+.+++.+.+++.|+|+.|+.+|+.+++.+++.-
T Consensus 145 ~~-----l~~~L~-~~~~~VRk~A~~al~~l~~~~p~-----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 145 GE-----VEKLLK-TSNSYLRKKAALCAVHVIRKVPE-----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HH-----HHHHHH-SCCHHHHHHHHHHHHHHHHHCGG-----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HH-----HHHHHc-CCCHHHHHHHHHHHHHHHHHChH-----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 43 566777 89999999999999999875543 23456777888899999999999999999998654
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.94 E-value=0.00013 Score=63.10 Aligned_cols=172 Identities=14% Similarity=0.077 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.++.-|+-.|.++...+.+..-.- ....+-..|.+.|.+ ++..++..++.+++.++... ++..
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v----~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~---------~~~~ 328 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMV----VKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGT---------DEQT 328 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHH----HTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHH----HhccchHHHHHHhcC-CChhHHHHHHHHHHHHHccc---------hHHH
Confidence 455566666666666554321110000 112234567788888 88999999888888886321 1111
Q ss_pred HHHHHH----HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKS----QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~----~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
...+.. .|+.++. ++++.+|..++.+++.|+....+.. ..-. ..++|.+..++.+++..+|..|+.+++.++.
T Consensus 329 ~~i~~~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccHHHH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 111111 1455666 7889999999999988875322100 0011 2478889999999999999999999999987
Q ss_pred hhhhhhHHH-H-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 164 IFGNQESTY-L-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~~~l~~~-~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-..+...+ . ..+++.|...+.++ |++++..++
T Consensus 407 ~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L 441 (529)
T 3tpo_A 407 GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVIL 441 (529)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHH
T ss_pred CCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHH
Confidence 543332111 1 24566677788887 888886654
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.94 E-value=0.00025 Score=62.79 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.++.+-+......+ ++.--.+-+.+.+-|.+ +++.+|.-+-.++|.+... ..-+.+.
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~---------~e~~~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~~-------e~~~~l~ 148 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSN---------SELIRLINNAIKNDLAS-RNPTFMGLALHCIANVGSR-------EMAEAFA 148 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCC---------HHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCCH-------HHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhhccCCH-------HHHHHHH
Confidence 45566666666665555433 33334556677778888 9999999888888877421 1223333
Q ss_pred HHHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 89 QNNLKSQIILLL--QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 89 ~~~ik~~ll~~l--~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+. +.+++ . +.++.||++|+-++..+....++ .... +.+++.+.+++.|+|+.|+.+|+.++..++..-+
T Consensus 149 ~~-----v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~--~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 149 GE-----IPKILVAG-DTMDSVKQSAALCLLRLYRTSPD--LVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp TH-----HHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGG--GCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HH-----HHHHHhCC-CCCHHHHHHHHHHHHHHHHhChh--hcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 33 55677 5 88999999999999999985543 1231 2456677778899999999999999999987655
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy15255 167 NQESTYLVVIKQMLQQC 183 (199)
Q Consensus 167 ~~l~~~~~~l~~~l~~~ 183 (199)
+.+.++.+.+..++...
T Consensus 220 ~~~~~~~~~~~~~L~~l 236 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRI 236 (621)
T ss_dssp HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555555444
No 56
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.92 E-value=0.00012 Score=69.51 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=76.2
Q ss_pred CCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhHh
Q psy15255 55 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC------DNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 55 e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~------~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+..||.. ++.++++.+. ..|..+ -...||+.++..+... +.+.+|++.+.+++.|+....+
T Consensus 58 s~~~~vR~~----A~~~Lk~~I~----~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 58 TQVAIVRHF----GLQILEHVVK----FRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp TSCHHHHHH----HHHHHHHHHH----HSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHH----HHHHHHHHHH----HhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc
Confidence 356677774 5556666553 346554 6678899999998743 4688999999999999987643
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
..||++++.+++.+++ ++..++.++.+|..++|.+
T Consensus 130 ----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 130 ----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp ----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred ----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 5899999999999976 6677999999999999863
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.90 E-value=8.2e-05 Score=64.33 Aligned_cols=144 Identities=11% Similarity=0.122 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
..+-..|...|.+ +++.++..+|.+++.++...-.. ...+.-|- |+.++. +++..++..++.++.
T Consensus 250 ~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~---------Lv~lL~-~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 250 EQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ---------LVKLLG-ATELPIVTPALRAIG 318 (529)
T ss_dssp HHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHH---------HHHHHT-CSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHH---------HHHHhc-CCChhHHHHHHHHHH
Confidence 3444567777777 88899999998888887431000 00122222 555777 788899999999988
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.|+.........-.-...++.|.+++.++++.+|+.|+.+++.++..-........ ..+++.+...+.++ +.+||.+|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHH
Confidence 87642211000000123566777888999999999999999999865443322222 35666777788887 99999887
Q ss_pred h
Q psy15255 197 L 197 (199)
Q Consensus 197 ~ 197 (199)
+
T Consensus 398 ~ 398 (529)
T 3tpo_A 398 A 398 (529)
T ss_dssp H
T ss_pred H
Confidence 6
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.85 E-value=8.4e-05 Score=67.43 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+++.|.+ ++..+|+.++..+..+.+..+. .+.||.|++ ++. ++++.+|..|+.++..|+.....
T Consensus 118 ~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~---~g~ip~Lv~---------lL~-~~d~~vr~~A~~~L~~L~~~~~~ 183 (780)
T 2z6g_A 118 PTNVQRLAE-PSQMLKHAVVNLINYQDDAELA---TRAIPELTK---------LLN-DEDQVVVNKAAVMVHQLSKKEAS 183 (780)
T ss_dssp --------C-CSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---------HHH-CSCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHH---hCCHHHHHH---------HHC-CCCHHHHHHHHHHHHHHhCCChh
Confidence 467888888 7888898888877755444333 345666554 555 78899999999999988753321
Q ss_pred hhccCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 126 DAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
......-+..++.|.+.+.+ +++.+|+.|+.+|..+...-.....-.....++.+...++++ +++|+..|+.
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~ 256 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP-VDSVLFHAIT 256 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 11112235788888888874 499999999999999765422111111135677788899997 8999988763
No 59
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.84 E-value=1.9e-05 Score=68.13 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.++.....+.. . .-....+-..|.+.|.+ ++..++..++.+++.++... ++..
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~-~---~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~---------~~~~ 309 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERI-E---MVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGT---------DEQT 309 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHH-H---HHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHhhchhhhH-H---HHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCC---------HHHH
Confidence 456677777777776654331110 0 00112234567888888 88899999998888876321 1111
Q ss_pred HHHHHH----HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKS----QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~----~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
..++.. .|+.++. ++++.+|..++.++..|+....+.. ..-+ ..++|.+..++.+++..+|..|+.+++.++.
T Consensus 310 ~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 310 QKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 111111 1333455 7888999999999988864322100 0011 2478899999999999999999999999987
Q ss_pred hhhhhhHHH-H-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 164 IFGNQESTY-L-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~~~l~~~-~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-..+...+ . ..+++.|...+.++ |++++..++
T Consensus 388 ~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L 422 (510)
T 3ul1_B 388 GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVIL 422 (510)
T ss_dssp HCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHH
Confidence 543332111 1 24566677788887 888887664
No 60
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.80 E-value=0.00034 Score=60.25 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHH-----HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQN-----NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
.++.++.-|+-.|.|..+.+ ++.+. ..-..|++.|.+ ++..||..++.+++.|+...
T Consensus 113 ~~~~lq~~Aa~aL~nias~~---------~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~-------- 174 (510)
T 3ul1_B 113 DCSPIQFESAWALTNIASGT---------SEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDG-------- 174 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTSC---------HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTC--------
T ss_pred CCHHHHHHHHHHHHHHhcCC---------HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCC--------
Confidence 45666666777777765433 22222 233468888888 89999999999999987431
Q ss_pred hHHHHHHHHH----HHHHHHHhhcc----cHHHHHHHHHHHHHHHHHhHhhhccCCh---HHHHHHHHHHhcCCCHHHHH
Q psy15255 84 WPEFLQNNLK----SQIILLLQTCD----NDNIRRKICDAAAEVARNLIDDAGNNLW---PEFLQFLFQCANSDNTTLKE 152 (199)
Q Consensus 84 WpeLl~~~ik----~~ll~~l~~~~----~~~vr~~a~~~i~~i~~~~~~~~~~~~~---~~ll~~l~~~~~~~~~~vr~ 152 (199)
|+.-...++ ..|+.++.... ...+...++.++..++..-. ....+ ..++|.|.+++.++++.++.
T Consensus 175 -~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~---~~~~~~~~~~~lp~L~~LL~~~~~~v~~ 250 (510)
T 3ul1_B 175 -SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN---PAPPLDAVEQILPTLVRLLHHNDPEVLA 250 (510)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS---SCCCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred -HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc---chhHHHHHHhHHHHHHHHHhcCCHHHHH
Confidence 111111111 12445665221 22344444455544433111 11222 56899999999999999999
Q ss_pred HHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 153 SALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 153 ~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.|+.+++.++..-.+..... ...+++.+..++.++ ++.|+..|++
T Consensus 251 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~ 296 (510)
T 3ul1_B 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 296 (510)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHH
Confidence 99999999986543322111 134566777888887 8889877753
No 61
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.78 E-value=0.00057 Score=61.98 Aligned_cols=147 Identities=9% Similarity=0.019 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
...-..|...|.+ +++.||..++.+++.|+...-.......=++.++. |+..+..++++.+|..|+.++..++.
T Consensus 149 ~g~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~-----Lv~~L~~~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 149 TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH-----HHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 3445567777777 78999999999999998543100000001334444 55677645688999999999888654
Q ss_pred HhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.. +....-.-...++.|.++++++++.+|..|+.+|..++...+....... ..+++.+...+.++ +.+|+..|
T Consensus 223 ~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a 296 (780)
T 2z6g_A 223 HR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 296 (780)
T ss_dssp SH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHH
T ss_pred Cc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHH
Confidence 21 1000000124788999999999999999999999999976543322222 35667777888886 87777654
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.76 E-value=0.00015 Score=50.78 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..|++.|.+ +++.||..++..++.+.. ++.++. |+.++. ++++.||..++..++.+.
T Consensus 45 ~~L~~~L~d-~~~~vR~~A~~aL~~~~~-----------~~a~~~-----L~~~L~-d~~~~VR~~A~~aL~~~~----- 101 (131)
T 1te4_A 45 EPLLESLSN-EDWRIRGAAAWIIGNFQD-----------ERAVEP-----LIKLLE-DDSGFVRSGAARSLEQIG----- 101 (131)
T ss_dssp HHHHHGGGC-SCHHHHHHHHHHHGGGCS-----------HHHHHH-----HHHHHH-HCCTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHhcCC-----------HHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhC-----
Confidence 668888888 899999998888776531 333443 445666 889999999888877543
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
-++.++.|.+.++|+++.+|..|..+++.|
T Consensus 102 ------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 102 ------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 145678888888999999999999998764
No 63
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.72 E-value=0.0013 Score=52.03 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=89.3
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCCh---HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLW---PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 132 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~W---peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~ 132 (199)
+++.|-.+.-+++..++..+-+.+..-.= .-++|. |+.=++ ++.+.+|..+-+++..+... .+ -
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~-----LveKlG-d~k~~vR~~~r~il~~l~~v-~~------~ 165 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY-----LLLKTG-EAKDNMRTSVRDIVNVLSDV-VG------P 165 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-----HHHGGG-CSSHHHHHHHHHHHHHHHHH-HC------H
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH-----HHHHhC-CChHHHHHHHHHHHHHHHHH-CC------H
Confidence 67888888888888887766543222221 234665 445556 77888999887777655542 22 2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH---HHHHHhhCCCCCHHHhhhhhc
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK---QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~---~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+++.+..++.+.++++|+..+..++.+.+..+-. + ...+ +.+..++.|+ |.+||-+|+.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~-d~~VR~aAl~ 229 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDK-DVNVRNAAIN 229 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCC-CHHHHHHHHH
Confidence 347888888999999999999999999999887754 2 1123 6677899998 9999999863
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.62 E-value=0.0038 Score=57.87 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=80.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
++..+. +....||..|-..+..++..+.+ .....++|.++..+.+. .|+.+.+|+.++..+++..++++...++
T Consensus 100 ~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 100 ICTNAG-NKDKEIQSVASETLISIVNAVNP----VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHhc-CCchHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 444555 67788999988888888876654 24588999999999765 7999999999999999988888888899
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|++++..+|-|- -++|..+|.
T Consensus 175 ~~~p~~~~~~~d~-k~~v~~~~~ 196 (986)
T 2iw3_A 175 ELIPVLSETMWDT-KKEVKAAAT 196 (986)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHH
T ss_pred chhcchHhhcccC-cHHHHHHHH
Confidence 9999999999997 899998875
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.55 E-value=0.0065 Score=45.65 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.-++|-++.++.|.|.-||.+|+.+++.+++.-+
T Consensus 180 ~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 180 NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 3456666666666666667777776666666543
No 66
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.55 E-value=0.0014 Score=55.69 Aligned_cols=142 Identities=8% Similarity=0.046 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+..|.++...+... ..+ -.. ...-..+++.|.+.+++.+|..++.++..+.+.. .....+.
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~--~~~-~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~------~~~~~i~ 98 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASR--HAI-MRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR------EGLLAIF 98 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHH--HHH-HTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccH--HHH-HhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc------hhHHHHH
Confidence 67899999999999987543110 000 001 1344567788877568899998888888765321 0111111
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC--hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL--WPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~--~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
..-.=..|+.++. ++++.++..++.++..++....+. ... -...+|.+.+.+.++++.+|..++.++..++.
T Consensus 99 ~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 99 KSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGA--KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTH--HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcch--HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0000012566777 778999999999999887642210 011 14578899999999999999999999988875
No 67
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.53 E-value=0.00071 Score=59.75 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-..|...|.+ +++.+|..++.+++.++...-.......=+..++. |+..+...+++.++..++.++..++...
T Consensus 16 i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~-----Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~- 88 (644)
T 2z6h_A 16 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTAGTLHNLSHHR- 88 (644)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHH-----HHHHHHSCCCHHHHHHHHHHHHHHTTSH-
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHH-----HHHHHhcCCCHHHHHHHHHHHHHHhcCh-
Confidence 4457778887 88999999999999998543100000001223333 5567764458889998888887665321
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+....-.-...++.|.++++++++.+|..|+.++..++...+...... ....++.+...++++ +++++..|+
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~ 161 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITT 161 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHH
Confidence 100000002478888999999999999999999999987643322222 245677788888887 888877653
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.51 E-value=0.0007 Score=59.89 Aligned_cols=92 Identities=12% Similarity=-0.029 Sum_probs=72.1
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHh--cCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA--NSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
.+.+-++ ++++.+|-.|+.+++.|... ...+.+.+.+.+++ .|+++.||..|+.++..+....++.+..
T Consensus 115 ~l~kDl~-~~n~~ir~lALr~L~~i~~~-------e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~- 185 (621)
T 2vgl_A 115 AIKNDLA-SRNPTFMGLALHCIANVGSR-------EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM- 185 (621)
T ss_dssp HHHHHHH-SCCHHHHHHHHHHHHHHCCH-------HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HHHHhcC-CCCHHHHHHHHHHhhccCCH-------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-
Confidence 3555666 88999999999999877532 24578999999999 8999999999999999999865544432
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+++.+..++.|+ |+.|+..|+
T Consensus 186 -~~~~~~l~~lL~d~-d~~V~~~a~ 208 (621)
T 2vgl_A 186 -GDWTSRVVHLLNDQ-HLGVVTAAT 208 (621)
T ss_dssp -CSCHHHHHHHTTCS-CHHHHHHHH
T ss_pred -hhHHHHHHHHhCCC-CccHHHHHH
Confidence 35566667788887 999998775
No 69
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.50 E-value=0.002 Score=56.82 Aligned_cols=169 Identities=8% Similarity=-0.027 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHH--
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE-- 86 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe-- 86 (199)
.++.+|..|+..|.++...+. ..-.-.. ...+-..+++.|.+.+++.+|..++.++..+.+.. .....
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~-~~~~i~~---~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~------~~~~~i~ 95 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEA-SRHAIMR---SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR------EGLLAIF 95 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTT-HHHHHTT---CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCh-hHHHHHh---ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh------hhHHHHH
Confidence 678999999999999875431 1000000 12344668888887668899998888877665331 00111
Q ss_pred ---HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 87 ---FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 87 ---Ll~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.++. |+.++. ++++.++..++.++..++....+.. ... -...+|.|.+.+.+++++++..++.++..++
T Consensus 96 ~~g~i~~-----Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 96 KSGGIPA-----LVKMLG-SPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp TTTHHHH-----HHHHTT-CSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HcCCHHH-----HHHHHh-CCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 1222 556777 7789999999999999886431100 001 1357889999999999999999999999887
Q ss_pred HhhhhhhHH-HHHHHHHHHHHhhCCCCCHHHhh
Q psy15255 163 EIFGNQEST-YLVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 163 e~~~~~l~~-~~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
...++.-.. .....++.+...+.++++.+++.
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 201 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHH
Confidence 532221111 11233555566666653444443
No 70
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.43 E-value=0.0011 Score=56.48 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
..-..|...|.+ +++.+|..++.+++.++...-.....-.=+..++. ++..+...+++.++..++.++..++..
T Consensus 17 ~~i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~-----Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 17 RAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 345567778887 89999999999999988542100000000122333 555666456888999988888876532
Q ss_pred hHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 123 LIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 123 ~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
. +. .... ...+|.|.++++++++.+|..|+.++..++..-+..-... ....++.+...+.++ +++++..+
T Consensus 91 ~-~~--~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~ 163 (529)
T 1jdh_A 91 R-EG--LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 163 (529)
T ss_dssp H-HH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHH
T ss_pred c-hh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHH
Confidence 1 10 0011 2468888899999999999999999999987643321111 245667777888887 88887665
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.40 E-value=0.0027 Score=55.96 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
.....|...|.+ +++.+|..+-..++.++... |+++..+ ...++.++. +++..+|..+.+++..++.
T Consensus 313 ~a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~---------p~~~~~~-~~~i~~~l~-d~d~~Ir~~alelL~~l~~- 379 (618)
T 1w63_A 313 LAINILGRFLLN-NDKNIRYVALTSLLKTVQTD---------HNAVQRH-RSTIVDCLK-DLDVSIKRRAMELSFALVN- 379 (618)
T ss_dssp HHHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHH---------HHHHGGG-HHHHHHGGG-SSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhC-CCCchHHHHHHHHHHHHhhC---------HHHHHHH-HHHHHHHcc-CCChhHHHHHHHHHHHHcc-
Confidence 344556666666 67788888777777777542 3332211 113666777 8889999999998887653
Q ss_pred hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
...+..+++.+...+.+.+..+|..++.+++.+++.++.....+.+.+..++.
T Consensus 380 ------~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~ 432 (618)
T 1w63_A 380 ------GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLT 432 (618)
T ss_dssp ------SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 24578888888988888999999999999999998776555666666665554
No 72
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.39 E-value=0.0018 Score=60.47 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc---c-----cHHHHHHHHHHHH
Q psy15255 49 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC---D-----NDNIRRKICDAAA 117 (199)
Q Consensus 49 l~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~---~-----~~~vr~~a~~~i~ 117 (199)
+..|....++.+|..++.+.-..++ ..|..+ -...+|+.++..+... + .+.++++.+.+++
T Consensus 54 ~~iL~~s~~~~vR~faa~~Lk~~I~--------~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la 125 (1023)
T 4hat_C 54 DQILQFSTNPQSKFIALSILDKLIT--------RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125 (1023)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHH--------HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH--------hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 3444444677888865555554443 346554 4567888888877521 1 3668888999999
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----------------hhHHHHHHHHHHHH
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----------------QESTYLVVIKQMLQ 181 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----------------~l~~~~~~l~~~l~ 181 (199)
.|+....+ ..||++++-+.+.+++ ++...+.++.++..+.|.+.+ .+....+.+.+.+.
T Consensus 126 ~I~~~~~p----~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~ 200 (1023)
T 4hat_C 126 QILKQEWP----QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCF 200 (1023)
T ss_dssp HHHHHHTT----TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCh----hhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987654 5899999999999864 456788999999999887532 12344566777777
Q ss_pred HhhCCCCCHHHhhhhh
Q psy15255 182 QCLLPPNPYSVQALQL 197 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~A~ 197 (199)
.++.+++++++...++
T Consensus 201 ~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 201 QVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHCSSCHHHHHHH
T ss_pred HHHhCCCCHHHHHHHH
Confidence 7776544566654443
No 73
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.37 E-value=0.0018 Score=60.64 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=91.2
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhh--------cccHHHHHHHHHHHHH
Q psy15255 50 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQT--------CDNDNIRRKICDAAAE 118 (199)
Q Consensus 50 ~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~--------~~~~~vr~~a~~~i~~ 118 (199)
..|....++.+|.-++.++-..++ ..|..+ -...+|+.++..+.. ++++.++.+.+.+++.
T Consensus 67 ~iL~~s~~~~vR~fAa~~L~~~I~--------~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~ 138 (1073)
T 3gjx_A 67 TILEFSQNMNTKYYGLQILENVIK--------TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQ 138 (1073)
T ss_dssp CC---CCSHHHHHHHHHHHHHHHH--------HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH--------hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHH
Confidence 334444677888866655555553 346555 456778888888762 2357888999999999
Q ss_pred HHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----------------hhHHHHHHHHHHHHH
Q psy15255 119 VARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----------------QESTYLVVIKQMLQQ 182 (199)
Q Consensus 119 i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----------------~l~~~~~~l~~~l~~ 182 (199)
|+....+ ..||++++-+.+..++ ++..++.++.++..+.|.+.+ .+....+.|...+..
T Consensus 139 I~k~~~P----~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~ 213 (1073)
T 3gjx_A 139 ILKQEWP----KHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQF 213 (1073)
T ss_dssp HHHHHTT----TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCh----hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987654 5799999999998863 456788999999999987432 122334566777777
Q ss_pred hhCCCCCHHHhhhh
Q psy15255 183 CLLPPNPYSVQALQ 196 (199)
Q Consensus 183 ~l~d~~~~~Vr~~A 196 (199)
+++++.++++...+
T Consensus 214 iL~~~~~~~lv~~~ 227 (1073)
T 3gjx_A 214 VMENSQNAPLVHAT 227 (1073)
T ss_dssp HHHHCCCHHHHHHH
T ss_pred HhcccCCHHHHHHH
Confidence 77654466665443
No 74
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.35 E-value=0.0028 Score=57.72 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHhhcch-hhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh-------cCcCCC
Q psy15255 10 SVEERQMSAVLLRKIFST-DFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL-------IDDAGN 81 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~-~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~-------l~~~~~ 81 (199)
++..|..|+--|.|+... +.+..+.. ..... .-.-|++.|.+..+...+..++.+++.|+... ++ .
T Consensus 549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~--~~~~~-aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~---a 622 (810)
T 3now_A 549 TEKGKRHATQALARIGITINPEVSFSG--QRSLD-VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK---E 622 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHTTT--HHHHH-THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---T
T ss_pred CHHHHHHHHHHHHHHhcCCChhhhhcc--hhhhc-HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH---c
Confidence 466777777777776543 32222221 11122 34566777775334444556666666665431 11 2
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh--hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID--DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFT 159 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~ 159 (199)
+.||.|. .++. ++++.++..|+++++.++..... ... .-...++.|..++.+++..+|+.|+.+++
T Consensus 623 G~l~~Lv---------~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v--~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 623 QGVSKIE---------YYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFE--GNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp THHHHHH---------HHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHH--SSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHH---------HHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHH--hccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4455554 3555 78889999999999988753211 010 00246889999999999999999999999
Q ss_pred hhhHhhhhhhHHHH--HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 160 SVPEIFGNQESTYL--VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 160 ~i~e~~~~~l~~~~--~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++...+....... ...++.+...+.++ |.++|..|+
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~ 729 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGI 729 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHH
Confidence 99985333332222 24566777888887 999998876
No 75
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.17 E-value=0.027 Score=46.33 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHH-----HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL-----KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~i-----k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
.++++|..|+-.|+++...+ +++.|..| -..|++.|...++..+++.++.++..|+... + .+.
T Consensus 139 ~~~~v~~~A~~aL~nLs~~~--------~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~---~nk 206 (354)
T 3nmw_A 139 ESEDLQQVIASVLRNLSWRA--------DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-T---ENK 206 (354)
T ss_dssp SCHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-H---HHH
T ss_pred CCHHHHHHHHHHHHHHhccC--------CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-h---hhh
Confidence 45677777777777765421 12233333 3456676555477888888888887776411 0 000
Q ss_pred h-----HHHHHHHHHHHHHHHHhhcccH----HHHHHHHHHHHHHHHHhHh-hhccCCh--HHHHHHHHHHhcCCCHHHH
Q psy15255 84 W-----PEFLQNNLKSQIILLLQTCDND----NIRRKICDAAAEVARNLID-DAGNNLW--PEFLQFLFQCANSDNTTLK 151 (199)
Q Consensus 84 W-----peLl~~~ik~~ll~~l~~~~~~----~vr~~a~~~i~~i~~~~~~-~~~~~~~--~~ll~~l~~~~~~~~~~vr 151 (199)
. ...+|. |+.++. ..++ .++..++-++..++.++.. +...... ...+|.|.+.+.+++..++
T Consensus 207 ~~i~~~~Gai~~-----Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 207 ADICAVDGALAF-----LVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp HHHHHSTTHHHH-----HHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhcCcHHH-----HHHHhc-cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 0 011232 555666 3332 4788888888877753211 0000111 2368888999999999999
Q ss_pred HHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 152 ESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.|+.++..++..-++...... ...++.+...++++ ++++|..|+
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~ 326 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSA 326 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHH
Confidence 9999999999843222221111 35567788888887 889987765
No 76
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.12 E-value=0.035 Score=45.61 Aligned_cols=172 Identities=10% Similarity=0.131 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh---cCc--CCCCCh
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL---IDD--AGNNLW 84 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~---l~~--~~~~~W 84 (199)
++.+|..|+-.|+|+...+.+.... +. ....+-..|++.|.+ +++.++..++.++..|+... ... ...+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~-i~--~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~- 171 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKAT-LC--SMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS- 171 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHH-HH--HCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH-
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHH-HH--HcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC-
Confidence 3567788888888876544111100 00 012234567788887 88999999998888887430 000 00111
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC---hHHHHHHHHHHhcCCCH----HHHHHHHHH
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL---WPEFLQFLFQCANSDNT----TLKESALRL 157 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~---~~~ll~~l~~~~~~~~~----~vr~~a~~~ 157 (199)
+|. |+.++....++.++..++.++..++....+. ... -...+|.|.+++.+++. .+++.|+.+
T Consensus 172 ---Ip~-----Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n--k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a 241 (354)
T 3nmw_A 172 ---VKA-----LMECALEVKKESTLKSVLSALWNLSAHCTEN--KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241 (354)
T ss_dssp ---HHH-----HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH--HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH
T ss_pred ---HHH-----HHHHHhcCCCHHHHHHHHHHHHHHHccChhh--hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH
Confidence 222 4455443567888888888888877522110 011 13467888888876643 589999999
Q ss_pred HHhhhHhh---hhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 158 FTSVPEIF---GNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 158 l~~i~e~~---~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+..+..++ ++.-.... ...++.+...+.++ +.+++..|+
T Consensus 242 L~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~ 284 (354)
T 3nmw_A 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC 284 (354)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHH
Confidence 98887631 22111111 23466777788887 888988776
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.08 E-value=0.02 Score=48.76 Aligned_cols=174 Identities=13% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHH-----HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC-CCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLK-----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNN 82 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik-----~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~-~~~ 82 (199)
.++++|..|+-.|+++...+ +++.|..|. ..|++.|...++..++..++.++..|+...-+.. ...
T Consensus 255 ~~~~v~~~A~~aL~nLs~~~--------~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 255 ESEDLQQVIASVLRNLSWRA--------DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp SCHHHHHHHHHHHHHHTSSC--------CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666666666666664321 123444433 3567766555778888888888888875210000 000
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccH----HHHHHHHHHHHHHHHHhHh-hhccCCh--HHHHHHHHHHhcCCCHHHHHHHH
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDND----NIRRKICDAAAEVARNLID-DAGNNLW--PEFLQFLFQCANSDNTTLKESAL 155 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~----~vr~~a~~~i~~i~~~~~~-~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~ 155 (199)
.-...++. |+.++. ..++ .++..++-++..++.++.. +...... ...+|.|.+.+.+++..+++.|+
T Consensus 327 ~~~Gal~~-----Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 327 AVDGALAF-----LVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HSTTHHHH-----HHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HhcCcHHH-----HHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence 00011232 455666 3332 4788888888887753211 0000111 23678889999999999999999
Q ss_pred HHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 156 RLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 156 ~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++..++..-++..... ....++.+...+.++ +++++..|+
T Consensus 401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa 442 (458)
T 3nmz_A 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSA 442 (458)
T ss_dssp HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHH
Confidence 99999984322222111 135567788888887 899887765
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.07 E-value=0.0014 Score=50.92 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
.-..+++.|.+ .++.++..+-.++.++++..=+.-..-.-.++++. ++..+. +.+..+..+|..|+..+....
T Consensus 34 ~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~-----iI~llk-~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 34 ALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLERHLDV-----FINALS-QENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----HHHTCC-STTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-----HHHHHh-ccchhHHHHHHHHHHHHHcCC
Confidence 34456666655 89999998888999998873110001223344555 444555 788899999999999887655
Q ss_pred HhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 124 IDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+- ..+...-+...+...+.++++-.++.|...++.+ ... .....++.++...+.+. |.+|+.+|++
T Consensus 107 pL--~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~-----~~~~~V~~~l~sLl~Sk-d~~vK~agl~ 172 (265)
T 3b2a_A 107 PM--GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL-----EDSKLVRTYINELVVSP-DLYTKVAGFC 172 (265)
T ss_dssp CB--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS-----CCCHHHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc-----cchHHHHHHHHHHHhCC-ChhHHHHHHH
Confidence 32 1245566788888888888999999999999887 111 12356677777777776 8899888875
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.93 E-value=0.0066 Score=55.95 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=64.5
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
||+.+.+.++..||+.+...+|.++-.. ...=|. ++..+....++.+|..++-+++.+..
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~~g~-----~e~v~r---------lv~~L~~~~d~~VR~gAalALGli~a------ 641 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVLLRD-----YTTVPR---------IVQLLSKSHNAHVRCGTAFALGIACA------ 641 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSS-----CSSHHH---------HTTTGGGCSCHHHHHHHHHHHHHHTS------
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhccCC-----HHHHHH---------HHHHHHhcCCHHHHHHHHHHHHHhcc------
Confidence 5555555577788887777776664221 112222 22333336789999987776664321
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...-+..+..|..+..|++..||..|+.+++.+.--
T Consensus 642 -Gn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 642 -GKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp -SSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred -CCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 123478888999999999999999999999998743
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.91 E-value=0.0065 Score=48.06 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=78.6
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDA 115 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~ 115 (199)
+++..-..+--.|++=+++ +...||.++.+++-.+... ++. ...|+- ++.++. +.+..+|...++.
T Consensus 125 ~~~~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v-~~~--~~v~~~---------l~~g~k-sKN~R~R~e~l~~ 190 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDV-VGP--LKMTPM---------LLDALK-SKNARQRSECLLV 190 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH-HCH--HHHHHH---------HHHGGG-CSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH-CCH--HHHHHH---------HHHHHc-cCCHHHHHHHHHH
Confidence 4444444555566666676 6667777777666555432 221 112222 445665 6778888888888
Q ss_pred HHHHHHHhHhhhccCChHHHH---HHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH
Q psy15255 116 AAEVARNLIDDAGNNLWPEFL---QFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL 173 (199)
Q Consensus 116 i~~i~~~~~~~~~~~~~~~ll---~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~ 173 (199)
+..+.... |.. -...+ |.+.+++.|+|..||.+|+.++..+....++.+..+.
T Consensus 191 l~~li~~~----G~~-~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 191 IEYYITNA----GIS-PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHHHH----CSG-GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhc----CCC-ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77766543 222 23356 8999999999999999999999999988888765543
No 81
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.84 E-value=0.034 Score=51.76 Aligned_cols=136 Identities=9% Similarity=0.076 Sum_probs=87.9
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHhhcCcCCCCCh
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAGNNLW 84 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--~~~vR~~~~~~ia~la~~~l~~~~~~~W 84 (199)
++.++..|+.|--.|.+.-+. ...|. ..+..|.+.+ ++.+|.-++.++-..++ .++.. ..-
T Consensus 18 p~sd~~~r~~A~~~L~~~q~s--p~aw~------------~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~l~~e--~~~ 80 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRSS--STGWK------------ICHEIFSEKTKYKPSTRLICLQTLSEKVR-EWNNE--SNL 80 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHS--TTHHH------------HHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HCCTT--TSH
T ss_pred CCCCHHHHHHHHHHHHHHHcC--hhHHH------------HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-hCChh--hhH
Confidence 334667777766666554221 11232 3455555533 67888887777777776 33321 000
Q ss_pred HHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q psy15255 85 PEFLQNNLKSQIILLLQT----CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT-TLKESALRLFT 159 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~----~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vr~~a~~~l~ 159 (199)
+ -...+|+.++..+.. ...+.+|++.+.++..++....+ ..||++++-++++++++++ ..-...++++.
T Consensus 81 ~--~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 81 L--ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp H--HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 0 245677778888773 23567999999999999987654 5999999999999976544 34566777777
Q ss_pred hhhHhh
Q psy15255 160 SVPEIF 165 (199)
Q Consensus 160 ~i~e~~ 165 (199)
.+.|.+
T Consensus 155 ~i~EEv 160 (980)
T 3ibv_A 155 SIGDEI 160 (980)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 777665
No 82
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.81 E-value=0.018 Score=52.42 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
.....++..+.+ +++.++..+...++..+...-. ..-+....+ .-|..++. +.++.+|..|.-+++.+...
T Consensus 290 G~v~~li~Ll~s-~~~~~q~~A~~al~~aa~~~~~------R~~I~~~gv-~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~ 360 (810)
T 3now_A 290 GILQMILAMATT-DDELQQRVACECLIAASSKKDK------AKALCEQGV-DILKRLYH-SKNDGIRVRALVGLCKLGSY 360 (810)
T ss_dssp THHHHHHHHHHS-SCHHHHHHHHHHHHHHTTSHHH------HHTTHHHHH-HHHHHHTT-CSCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCcHH------HHHHHHcCc-HHHHHHHc-CCCHHHHHHHHHHHHHhccc
Confidence 445678888888 7889998888888876543210 000111112 23555666 67788999888888887642
Q ss_pred hH-h----hhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHhhhhh--hHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 123 LI-D----DAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQ--ESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 123 ~~-~----~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~~~~~--l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
.. + .+..+....+++.|.+++.++ ++.+|+.|+.++.++...-+.. +... ...++.+..++.++ ++.++
T Consensus 361 ~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d-~g~Ip~LV~LL~s~-d~~i~ 438 (810)
T 3now_A 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIED-KASIHALMDLARGG-NQSCL 438 (810)
T ss_dssp TTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHC-HHHHHHHHHHHHTT-CGGGH
T ss_pred cccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHc-cchHHHHHHHhCCC-ChHHH
Confidence 21 1 111133578899999999988 8999999999999998654433 2211 24555566677775 77887
Q ss_pred hhhh
Q psy15255 194 ALQL 197 (199)
Q Consensus 194 ~~A~ 197 (199)
..|.
T Consensus 439 ~~al 442 (810)
T 3now_A 439 YGVV 442 (810)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.79 E-value=0.018 Score=53.47 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-..++.+..| ....||.++-.++..+++..=+ ..-+.++|. |+..+....-=..+-.|+.++..++...+
T Consensus 97 ~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~-----~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 97 VPAICTNAGN-KDKEIQSVASETLISIVNAVNP----VAIKALLPH-----LTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCH----HHHHHHHHH-----HHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 3556677777 7788999888888888877532 122566776 55667633345677778899998887654
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCC
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~ 187 (199)
+ ......|+++|.+..++-|.-+.|..+|..++.++|..++.. +.++++.|+ .|+.+|
T Consensus 167 ~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~----~~~~~p 225 (986)
T 2iw3_A 167 D-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI----QCIADP 225 (986)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH----HHHHCT
T ss_pred H-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH----HHhcCh
Confidence 3 334678999999999999999999999999999999887644 666655544 466676
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.74 E-value=0.13 Score=43.69 Aligned_cols=165 Identities=11% Similarity=0.140 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhcchhhHhhhhccCHhhHHH------HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh
Q psy15255 11 VEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNN------LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 84 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~------ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W 84 (199)
+.++.-|+-.|+|+...+ ++.|.. .-..|++.|.+ +++.++..++.+++.|+... ....-
T Consensus 214 ~~l~~~Aa~aL~nLa~~~---------~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~----~~~~k 279 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD---------VANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA----DVNSK 279 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC---------HHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSC----CHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---------cccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC----CHHHH
Confidence 445666666666665433 122222 23467778886 88999999888888876320 00000
Q ss_pred HHH-----HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC---hHHHHHHHHHHhcCCCH----HHHH
Q psy15255 85 PEF-----LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL---WPEFLQFLFQCANSDNT----TLKE 152 (199)
Q Consensus 85 peL-----l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~---~~~ll~~l~~~~~~~~~----~vr~ 152 (199)
..+ +|. |+.++....++.++..++.++..++....+. ... -...+|.|.+++.+++. .+++
T Consensus 280 ~~I~~~GaI~~-----LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n--k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~ 352 (458)
T 3nmz_A 280 KTLREVGSVKA-----LMECALEVKKESTLKSVLSALWNLSAHCTEN--KADICAVDGALAFLVGTLTYRSQTNTLAIIE 352 (458)
T ss_dssp HHHHHTTHHHH-----HHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHH
T ss_pred HHHHHcCCHHH-----HHHHHhcCCCHHHHHHHHHHHHHHccCCHHH--HHHHHHhcCcHHHHHHHhcCCCCcchHHHHH
Confidence 111 222 5555443567888888888888887632111 111 13467888888876543 4899
Q ss_pred HHHHHHHhhhHh---hhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 153 SALRLFTSVPEI---FGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 153 ~a~~~l~~i~e~---~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|+.++..+..+ -++...... ...++.+...+.++ +.+++..|+
T Consensus 353 ~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~ 400 (458)
T 3nmz_A 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC 400 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHH
Confidence 999999888763 222111111 24566777888887 888998876
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.63 E-value=0.045 Score=45.06 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.+.-+.++...+. +++.- -+-+.+-+=+.+ +++.+|..+-.+.+.|.. ...-+.+.
T Consensus 80 ~d~~lKrLvYLyl~~~~~~---------~~e~i-Lv~Nsl~kDl~~-~N~~iR~lALRtL~~I~~-------~~m~~~l~ 141 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI---------AEDVI-IVTSSLTKDMTG-KEDSYRGPAVRALCQITD-------STMLQAIE 141 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT---------SSCGG-GGHHHHHHHHHS-SCHHHHHHHHHHHHHHCC-------TTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---------HHHHH-HHHHHHHhhcCC-CcHhHHHHHHHHHhcCCC-------HHHHHHHH
Confidence 5666777766666655332 33333 455666667777 888888776666666642 23334443
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
+. +-+++. +.++.||++|+-++..+....++ .... ++..+.+++.|.++.|...|+.++..+.+
T Consensus 142 ~~-----lk~~L~-d~~pyVRk~A~l~~~kL~~~~pe--~v~~---~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 142 RY-----MKQAIV-DKVPSVSSSALVSSLHLLKCSFD--VVKR---WVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HH-----HHHHHT-CSSHHHHHHHHHHHHHHTTTCHH--HHHT---THHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HH-----HHHHcC-CCCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 32 445666 88889998888887766543332 1122 46666777788888888888888877764
No 86
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.59 E-value=0.047 Score=46.12 Aligned_cols=127 Identities=8% Similarity=0.042 Sum_probs=79.2
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.++..|.+ +++.++..++..+..++... ...+..+...-.=..|+.++. ++++.++..|+.++..|+..-.+.
T Consensus 6 ~lv~~L~s-~~~~~q~~A~~~L~~l~~~~-----~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 6 KAVQYLSS-QDEKYQAIGAYYIQHTCFQD-----ESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHS-SCTHHHHHHHHHHHHHTSSC-----SSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 46777887 78888988888888876321 233433311100112566887 788899999999998887521110
Q ss_pred hccCCh--HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHhh
Q psy15255 127 AGNNLW--PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQEST-YLVVIKQMLQQCL 184 (199)
Q Consensus 127 ~~~~~~--~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~~~l~~~l~~~l 184 (199)
.... ..-+|.|.+++. ++++.+++.|+.++..++.. + +... .....++.+...+
T Consensus 79 --k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 --KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-ELKEELIADALPVLADRV 136 (457)
T ss_dssp --HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHHHHHH
Confidence 0001 123667777777 78999999999999999876 2 2221 1224555566666
No 87
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.55 E-value=0.013 Score=45.39 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
+.+ ++...||-.|+..++.. . .-++.++.+.. ...|++|.||+.+..+++.++...+.+ ..+
T Consensus 79 L~~-~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 79 AYQ-SDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHT-CSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHh-CcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 444 78899999988866543 1 23778888887 667899999999999999998733322 133
Q ss_pred HHHHHhhCCCCCHHHhhhhhc
Q psy15255 178 QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+..-.+|+ ++.||-.|.+
T Consensus 142 ~~~~~W~~d~-n~~VRR~Ase 161 (240)
T 3l9t_A 142 PIIDEWLKSS-NLHTRRAATE 161 (240)
T ss_dssp HHHHHHHHCS-SHHHHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHH
Confidence 4566677886 8999988765
No 88
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.53 E-value=0.06 Score=42.28 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
....|++++. ++. |+.+++..+|+...+.+.+.+..- ....+..++.+..++.|+++.|-..+..+.+.
T Consensus 48 p~ll~~~l~~-----il~-~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 48 AELAEEFLES-----VLS-LAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp GGGHHHHHHH-----HHG-GGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHH-----HHH-hccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4566777775 445 344788889998877777766432 35778999999999999999999888888888
Q ss_pred hhHhhhhhh-------------HHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 161 VPEIFGNQE-------------STYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 161 i~e~~~~~l-------------~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+....-+.+ =..+..+...+.+.+.+. +..||..|+||
T Consensus 117 iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF 167 (257)
T 3gs3_A 117 IYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKF 167 (257)
T ss_dssp HHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHH
Confidence 764332211 123445556666666665 88999999998
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.049 Score=42.77 Aligned_cols=104 Identities=11% Similarity=0.138 Sum_probs=68.3
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc--
Q psy15255 51 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-- 128 (199)
Q Consensus 51 ~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~-- 128 (199)
+|++ +.+.+|..+..++-.++....+. ..+++. ++.++. ..++.+|..++..+..++..+.....
T Consensus 111 ~l~~-~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~-----l~~~l~-~Knpkv~~~~l~~l~~~l~~fg~~~~~~ 177 (278)
T 4ffb_C 111 GLTS-SRATTKTQSMSCILSLCGLDTSI------TQSVEL-----VIPFFE-KKLPKLIAAAANCVYELMAAFGLTNVNV 177 (278)
T ss_dssp TSSC-CCHHHHHHHHHHHHHHHHTSSSS------HHHHHH-----HGGGGG-CSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred HhcC-ccHHHHHHHHHHHHHHHHhcCcH------HHHHHH-----HHHHHh-ccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 3555 67778877777766665443221 122222 334555 77899999888888887765432110
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh
Q psy15255 129 NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 129 ~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
....+.+++.+..++.|+|+.||.+|..+++.+...+++
T Consensus 178 k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 178 QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 112456777888999999999999999999999877764
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.31 E-value=0.021 Score=49.89 Aligned_cols=135 Identities=16% Similarity=0.064 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC----CCChHHHHHHHHHHHHHHHHh------hc-ccHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG----NNLWPEFLQNNLKSQIILLLQ------TC-DNDNIRRKI 112 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~----~~~WpeLl~~~ik~~ll~~l~------~~-~~~~vr~~a 112 (199)
+-..|+.-|-+ +.=.+||-+|....+++|..=...+ .+. ++.- |---+.++. ++ -...||..+
T Consensus 175 fcE~L~~DLFd-p~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAv---RLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 175 FFEQISDNLLS-YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFS---KIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp TTHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHH---HHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred HHHHHHHHhcC-cchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHH---HHHHHHHhccccccccCeeeeehHHHH
Confidence 55667777888 8889999999999999998632111 122 4321 111112221 22 347799999
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHH
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~V 192 (199)
+++++.+ .++++ .. .++..++..+..+.|++|.+|+-.+-++.+.+. . .+.+.+.+..+++|+ |.+|
T Consensus 249 AQtLGaL-~hLp~-----e~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-Ld~Vv~aVL~GL~D~-DDDV 315 (800)
T 3oc3_A 249 AYLLSRI-YPLIG-----PN-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-KDGLCRKLVSLLSSP-DEDI 315 (800)
T ss_dssp HHHHHHH-TTTSC-----SC-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-HHHHHHHHHHHTTCS-SHHH
T ss_pred HHHHHHH-HhCCh-----hH-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-HHHHHHHHHhhcCCc-ccHH
Confidence 9999987 55443 22 233333345577899999999999999833332 2 688888999999998 9999
Q ss_pred hhhhh
Q psy15255 193 QALQL 197 (199)
Q Consensus 193 r~~A~ 197 (199)
|..|.
T Consensus 316 RAVAA 320 (800)
T 3oc3_A 316 KLLSA 320 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97764
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.11 E-value=0.039 Score=45.44 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=67.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+.+=++ ++++-+|-.|..+++.|.. ..-.+.+.+.+.+++.|.+|-||.+|+-+...++...++-...+
T Consensus 109 l~kDl~-~~N~~iR~lALRtL~~I~~-------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~--- 177 (355)
T 3tjz_B 109 LTKDMT-GKEDSYRGPAVRALCQITD-------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW--- 177 (355)
T ss_dssp HHHHHH-SSCHHHHHHHHHHHHHHCC-------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT---
T ss_pred HHhhcC-CCcHhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH---
Confidence 445555 7899999999888887653 23567899999999999999999999999998887765544443
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..-+..++.|. ++-|...|+
T Consensus 178 -~~~l~~ll~d~-n~~V~~~Al 197 (355)
T 3tjz_B 178 -VNEAQEAASSD-NIMVQYHAL 197 (355)
T ss_dssp -HHHHHHHTTCS-SHHHHHHHH
T ss_pred -HHHHHHHhcCC-CccHHHHHH
Confidence 44455567776 888876664
No 92
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.09 E-value=0.14 Score=44.89 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHH-----HHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLK-----SQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik-----~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
-..|+..|.+..++.++..++-++..|.. +...|++-.+..+. ..|+.++. .+++.++..++.++..+
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a------g~~~~~~~~~~~v~~~~glp~Lv~LL~-s~~~~v~~~A~~aL~nL 382 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCA------GRWTYGRYIRSALRQEKALSAIADLLT-NEHERVVKAASGALRNL 382 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHS------SCSHHHHHHHHHHTSHHHHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHc------CCccccHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 35678888776788999988888888862 23334443343332 24777887 77889999999998887
Q ss_pred HHHhHhhhccCCh-HHHHHHHHHHhcCC--------CHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCC-C
Q psy15255 120 ARNLIDDAGNNLW-PEFLQFLFQCANSD--------NTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPP-N 188 (199)
Q Consensus 120 ~~~~~~~~~~~~~-~~ll~~l~~~~~~~--------~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~-~ 188 (199)
+..... .... ...+|-|.+++.++ +..++..|+.+++.++..-+++-.... ...++.+...+.++ .
T Consensus 383 s~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~ 459 (584)
T 3l6x_A 383 AVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR 459 (584)
T ss_dssp HTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSS
T ss_pred hCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCC
Confidence 752210 0111 34678888888765 457889999999988754332222111 24455566677663 2
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
++.++.+|+
T Consensus 460 ~~~v~k~Aa 468 (584)
T 3l6x_A 460 SEKEVRAAA 468 (584)
T ss_dssp CHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 667776664
No 93
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.00 E-value=0.099 Score=48.29 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH-------H--------------------HHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL-------K--------------------SQIIL 98 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i-------k--------------------~~ll~ 98 (199)
+.+++.+.+..+..+|+.++..+|.+.-. .....+.++..+. | +.|+.
T Consensus 510 ~~LL~~~~e~~~e~vrR~aalgLGll~~g-----~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 510 HDMFTYSQETQHGNITRGLAVGLALINYG-----RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhhhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555546777888888777766311 1234444433321 1 01444
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.+..+.++.||..|+..++.|+. . . ++..+-++. +.++.++.+|.+|..+++.++..-+. ..++
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~---g---~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~ai 649 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLL---R---D---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAI 649 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTS---S---S---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhcc---C---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHH
Confidence 44446667777666555554331 1 1 123333444 34567888888888888877643221 2344
Q ss_pred HHHHHhhCCCCCHHHhhhhh
Q psy15255 178 QMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+.....|+ |..||..|+
T Consensus 650 d~L~~L~~D~-d~~Vrq~Ai 668 (963)
T 4ady_A 650 DVLDPLTKDP-VDFVRQAAM 668 (963)
T ss_dssp HHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHccCC-CHHHHHHHH
Confidence 4556667887 999998875
No 94
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.86 E-value=0.11 Score=43.82 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH-HHHHH-----HHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL-QNNLK-----SQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl-~~~ik-----~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
+-..|+..|.+.+++.++..++-+++.+... +..|+.-. +..+. ..|+.++. +++..++..|+.++.
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~------~~~~~~~~~~~~v~~~~~l~~Lv~LL~-~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTAS------KGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLS 356 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC------SSSHHHHHHHHHHTTSCCHHHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccC------cCcchHHHHHHHHHHcCCchHHHHHHh-CCCHhHHHHHHHHHH
Confidence 3445788888877889999888888888632 33443222 33331 23667888 788999999999998
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCC------HHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCH
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDN------TTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPY 190 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~ 190 (199)
.++....... .--...+|.|.+.+.+++ ..+...++.+++.++..-++.-... ....++.+...+.++.++
T Consensus 357 nls~~~~~~~--~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSRHPLLHR--VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHTSGGGHH--HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHH--HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 8865221000 001346777888887664 3577889999998875433221111 123344455555553267
Q ss_pred HHhhhhh
Q psy15255 191 SVQALQL 197 (199)
Q Consensus 191 ~Vr~~A~ 197 (199)
+++..|+
T Consensus 435 ~i~~~A~ 441 (457)
T 1xm9_A 435 KAAEAAR 441 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 95
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.65 E-value=1 Score=39.45 Aligned_cols=101 Identities=11% Similarity=-0.051 Sum_probs=64.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHh---Hhhhc-cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNL---IDDAG-NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST 171 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~---~~~~~-~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~ 171 (199)
|+.+++...++.++..|+.++..++..- ..... .-.-..-+|.|.+++.+++..+++.|+.+|.+++..-..+ ..
T Consensus 313 Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~ 391 (584)
T 3l6x_A 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-EL 391 (584)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HH
Confidence 5668875677889988888888775311 00000 0011245899999999999999999999999998653322 11
Q ss_pred HHHHHHHHHHHhhCCCC-------CHHHhhhhh
Q psy15255 172 YLVVIKQMLQQCLLPPN-------PYSVQALQL 197 (199)
Q Consensus 172 ~~~~l~~~l~~~l~d~~-------~~~Vr~~A~ 197 (199)
.-...++-+.+.|.+++ +.+++..||
T Consensus 392 I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~ 424 (584)
T 3l6x_A 392 IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISIL 424 (584)
T ss_dssp HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHH
T ss_pred HHhCCHHHHHHHhcCCcccccccchHHHHHHHH
Confidence 12345556666666642 356676665
No 96
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.48 E-value=0.56 Score=35.27 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHh
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQC 183 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~ 183 (199)
.++.+|-....++.+|+..-+. ..+.+..-++.++.|+|..-|.+|+.-++.+.+. --.|..-.++-+...
T Consensus 119 gd~kikIn~~yaLeeIaranP~-----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen----~~~yv~PfLprL~aL 189 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKANPM-----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN----SFKYVNPFLPRIINL 189 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT----THHHHGGGHHHHHGG
T ss_pred CCccceecHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc----CccccCcchHHHHHH
Confidence 4666776666666666654332 4456666667777777777777777766665443 223555556677778
Q ss_pred hCCCCCHHHhhhhhc
Q psy15255 184 LLPPNPYSVQALQLK 198 (199)
Q Consensus 184 l~d~~~~~Vr~~A~~ 198 (199)
+.|. |.-||..|++
T Consensus 190 L~D~-deiVRaSaVE 203 (253)
T 2db0_A 190 LHDG-DEIVRASAVE 203 (253)
T ss_dssp GGCS-SHHHHHHHHH
T ss_pred HcCc-chhhhHHHHH
Confidence 8887 8889988874
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.45 E-value=0.19 Score=38.89 Aligned_cols=136 Identities=12% Similarity=-0.010 Sum_probs=85.6
Q ss_pred hhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHH
Q psy15255 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRR 110 (199)
Q Consensus 31 ~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~ 110 (199)
..+..++ .+.++.....+..+ +...||--++.+++.+ + + . ++.++. +-..+..+++=.||.
T Consensus 62 ~~~~~~~---~~~~~~la~~L~~~-~~deVR~~Av~lLg~~-~---~-----~-~~~L~~-----ir~~va~D~~WrVre 122 (240)
T 3l9t_A 62 TDYKSND---GEYIKKLAFLAYQS-DVYQVRMYAVFLFGYL-S---K-----D-KEILIF-----MRDEVSKDNNWRVQE 122 (240)
T ss_dssp HHHHHSC---HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHT-T---T-----S-HHHHHH-----HHHTGGGCSCHHHHH
T ss_pred HHHHhCC---HHHHHHHHHHHHhC-cchHHHHHHHHHHHhc-c---C-----c-HHHHHH-----HHHHhCCCCCccHHH
Confidence 3444444 45566556666666 7789999888877765 2 1 1 344442 112244467777887
Q ss_pred HHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCH
Q psy15255 111 KICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190 (199)
Q Consensus 111 ~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~ 190 (199)
-++..+..++... .-...++.+.+.+.|+++.+|..|....-..+.. + ......+.+.+++.....|+ +.
T Consensus 123 ~lA~a~~~~~~~~-------~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~-s~ 192 (240)
T 3l9t_A 123 VLAKAFDEFCKKI-------EYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDV-SE 192 (240)
T ss_dssp HHHHHHHHHHHHH-------CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCS-CH
T ss_pred HHHHHHHHHHHhc-------CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCCh-HH
Confidence 7777776665411 1123678888999999999999998886543332 1 22233467788888887886 77
Q ss_pred HHhhh
Q psy15255 191 SVQAL 195 (199)
Q Consensus 191 ~Vr~~ 195 (199)
-||.+
T Consensus 193 yVrKS 197 (240)
T 3l9t_A 193 YVRKS 197 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 98
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.32 E-value=0.18 Score=41.90 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
..-+++++. ++. |+.+++..+|..+.+.+.+.+..- ....+..++.|..++.|+++.|-..+..+.+.+
T Consensus 59 sLl~~fl~~-----il~-f~~d~~~~vRk~~a~FieEa~~~~-----~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 59 TLLDNFLDE-----IIA-FQADKSIEVRKFVIGFIEEACKRD-----IELLLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGGGGHHH-----HHG-GGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHH-hccCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344555554 332 334778899999888887766532 346799999999999999999988888888877
Q ss_pred hHhhhhh-------------hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 162 PEIFGNQ-------------ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 162 ~e~~~~~-------------l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
....-+. .=..+..+...+...+.+. +..||+.|+||
T Consensus 128 Ypl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-n~GVrl~aiKF 177 (386)
T 3o2t_A 128 YKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD-NDGIRTHAIKF 177 (386)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHH
Confidence 6332211 1122445555566666665 88999999998
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.31 E-value=0.82 Score=37.15 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCC-----CCChHHHHHHHHHH----------------------------------HHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAG-----NNLWPEFLQNNLKS----------------------------------QII 97 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~-----~~~WpeLl~~~ik~----------------------------------~ll 97 (199)
+-..|+.++++.+.+.|.-..... -..+|+++..+++. .++
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF 170 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFF 170 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHH
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHH
Confidence 446688888888888876654321 12367777776642 123
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHH---hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARN---LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTY 172 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~ 172 (199)
..++ .++-.+..-|..+.-++... +...++..+++.++..+.+++++++--.|.-+++.++.+.-..... +..|
T Consensus 171 ~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Y 249 (341)
T 1upk_A 171 RYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKY 249 (341)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHH
T ss_pred HHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3333 45555555554444433221 0112334678889999999999999999999999999998764433 4455
Q ss_pred HH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++ .-+.++...+.|+ +..||.+|+
T Consensus 250 is~~~nLkl~M~LL~d~-sk~Iq~EAF 275 (341)
T 1upk_A 250 ISKPENLKLMMNLLRDK-SRNIQFEAF 275 (341)
T ss_dssp TTCHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCc-hhchhhhhh
Confidence 43 3355667789998 999999986
No 100
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.43 Score=43.13 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC---cCCCCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLID---DAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~---~~~~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
..+.+.|.+ ++..||++++.+++.++..--. .-.+...|.- ++. |+.+++ +++..+|..|+-+++.+
T Consensus 609 ~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l-----LV~Ll~-s~D~~~r~AAagALAnL 681 (778)
T 3opb_A 609 STIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI-----LVKLLQ-LSDVESQRAVAAIFANI 681 (778)
T ss_dssp HHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH-----HHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH-----HHHHHc-CCCHHHHHHHHHHHHHh
Confidence 345555555 7889999999999999964421 1112223431 333 556776 78899999988888877
Q ss_pred HHHhHhhh-ccCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhhHhhhh-----hhHHHH--HHHHHHHHHhhCCC
Q psy15255 120 ARNLIDDA-GNNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVPEIFGN-----QESTYL--VVIKQMLQQCLLPP 187 (199)
Q Consensus 120 ~~~~~~~~-~~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~e~~~~-----~l~~~~--~~l~~~l~~~l~d~ 187 (199)
........ ..-.-+..++.+...+++ ++..+|..++.++..++++.+. .+..+. ..+...+...++++
T Consensus 682 ts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 682 ATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred cCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 54332100 011224667777778877 7999999999999999985432 233333 24555566666665
No 101
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.18 E-value=0.83 Score=35.46 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=98.8
Q ss_pred ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 35 KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 35 ~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
.+++++-..+-..+...+.+ ++..++--++...|.+ +.. ..-|.+... ++.++. +.++.++..+..
T Consensus 107 pL~~~~y~Kl~~aL~dlik~-~~~il~~eaae~Lgkl-kv~------~~~~~V~~~-----l~sLl~-Skd~~vK~agl~ 172 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLLES-PDDMMRIETIDVLSKL-QPL------EDSKLVRTY-----INELVV-SPDLYTKVAGFC 172 (265)
T ss_dssp CBCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHC-CBS------CCCHHHHHH-----HHHHHT-CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcC-CCchHHHHHHHHhCcC-Ccc------cchHHHHHH-----HHHHHh-CCChhHHHHHHH
Confidence 45667767777778888885 9999999888888887 222 223444433 555664 899999988888
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh-hhhhhHHHHHHHHHHHHHhh-CCCCCHHH
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI-FGNQESTYLVVIKQMLQQCL-LPPNPYSV 192 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~-~~~~l~~~~~~l~~~l~~~l-~d~~~~~V 192 (199)
.+.+|+....+ ...|..++.-+-.++++.|+.+++-|+.++-.+..+ +..++.+..-.+.....+.. --+ .|.+
T Consensus 173 ~L~eia~~S~D---~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~-~~~~ 248 (265)
T 3b2a_A 173 LFLNMLNSSAD---SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG-APII 248 (265)
T ss_dssp HHHHHGGGCSS---CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSS-CHHH
T ss_pred HHHHhhcccCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcC-ChhH
Confidence 88887765432 578999999999999999999999999999888765 11222333333444444433 344 5677
Q ss_pred hhhh
Q psy15255 193 QALQ 196 (199)
Q Consensus 193 r~~A 196 (199)
|..|
T Consensus 249 ~~ka 252 (265)
T 3b2a_A 249 RLKA 252 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.10 E-value=0.02 Score=51.06 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++|++. .++++++..|..|+.+++.+++.-... +.-+.+.|..++..++.|+ +.+||.+|.
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~ 97 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGW 97 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHH
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHH
Confidence 4677654 488999999999999999999743221 3334467778888899998 999999886
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.56 E-value=0.016 Score=45.22 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=24.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 139 LFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 139 l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+..++.|++|.||..+...++ .+.+... +|+ +..||.+|.+
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~-~~~VR~aa~~ 239 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEP-DPEVRLAIAG 239 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCC-CHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCC-CHHHHHHHHH
Confidence 334455555556555555533 2344444 887 9999988753
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.55 E-value=0.22 Score=43.61 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN-DNIRRKICDAAAEV 119 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~-~~vr~~a~~~i~~i 119 (199)
...+...++.+|++ ++..||..+|.+..-++ ....-+.++.. +..++..-++ ..-.....+.++.+
T Consensus 297 Ld~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA-------~p~~l~~LL~i-----LWd~L~~LDDLSASTgSVMdLLAkL 363 (800)
T 3oc3_A 297 KDGLCRKLVSLLSS-PDEDIKLLSAELLCHFP-------ITDSLDLVLEK-----CWKNIESEELISVSKTSNLSLLTKI 363 (800)
T ss_dssp HHHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC-------CSSTHHHHHHH-----HHHHHHTCCSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC-cccHHHHHHHHHhhhhc-------chhhHHHHHHH-----HHHHhhhhcccchhhHHHHHHHHHH
Confidence 67888899999999 78899987666655554 23445555543 5556652221 11122344555555
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...-. ....-|+++|-++-.+.++-+.||.++++++..+. ..+.+.-++++.+-.+ +++|+..+.+
T Consensus 364 ~s~p~---~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------~~~~LRLIFQNILLE~-neeIl~lS~~ 429 (800)
T 3oc3_A 364 YRENP---ELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---------EESIDFLVAEVVLIEE-KDEIREMAIK 429 (800)
T ss_dssp HHHCT---TCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---------CHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred HcCCc---ccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhCC-cHHHHHHHHH
Confidence 44321 12233588899999999999999999999998887 1133444556666665 7888876653
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.50 E-value=0.14 Score=39.58 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=58.9
Q ss_pred HHHHHhhcccH--HHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--h
Q psy15255 96 IILLLQTCDND--NIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--E 169 (199)
Q Consensus 96 ll~~l~~~~~~--~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l 169 (199)
+++++. ++++ .++..++..+..++..-.+. .... ..-+|.|.+++.++++.+|+.|+.++..+...-++. .
T Consensus 13 lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~--r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 13 AVSMLE-ADHMLPSRISAAATFIQHECFQKSEA--RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHH--HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHH--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344666 4444 77777777777666433221 0011 124688889999999999999999999998632222 1
Q ss_pred HHHHHHHHHHHHHhhC-CCCCHHHhhhhh
Q psy15255 170 STYLVVIKQMLQQCLL-PPNPYSVQALQL 197 (199)
Q Consensus 170 ~~~~~~l~~~l~~~l~-d~~~~~Vr~~A~ 197 (199)
...... ++.+...+. .+ +.+++..|+
T Consensus 90 I~~~Ga-I~~Lv~lL~~~~-~~~~~e~a~ 116 (233)
T 3tt9_A 90 VAELNG-VPRLLQVLKQTR-DLETKKQIT 116 (233)
T ss_dssp HHHTTH-HHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHcCC-HHHHHHHHccCC-CHHHHHHHH
Confidence 111123 444445665 44 778887664
No 106
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.48 E-value=1.8 Score=32.41 Aligned_cols=74 Identities=11% Similarity=0.211 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHhh---hccCChHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 114 DAAAEVARNLIDD---AGNNLWPEFLQFLFQCANSD---NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 114 ~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
..+..++..+..+ +...+..+|+|.+..|+-.. ...+|+.|...++.++..+++.-..-...|...+...+.||
T Consensus 64 ~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp 143 (196)
T 4atg_A 64 KTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP 143 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC
Confidence 4455555555542 23467889999999999643 23799999999999999887654445577888888888886
No 107
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.39 Score=43.46 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=61.2
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhHh---hhccCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh---
Q psy15255 97 ILLLQTCDNDNIRRKICDAAAEVARNLID---DAGNNLWPE---FLQFLFQCANSDNTTLKESALRLFTSVPEIFGN--- 167 (199)
Q Consensus 97 l~~l~~~~~~~vr~~a~~~i~~i~~~~~~---~~~~~~~~~---ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~--- 167 (199)
..++. +++..+|..|+++++.++..... .+.....|. =++.+.+++.++|..+|++|..+++.+....+.
T Consensus 612 ~~LL~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 612 ENLML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp HHGGG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 33444 67889999999999998863321 111122233 277889999999999999999999998654332
Q ss_pred hh-H--HHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 168 QE-S--TYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 168 ~l-~--~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+ . ..++.++.++... .+ ++++|.-+
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~--~~-~~~l~~R~ 719 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQ--ID-DIELRQRL 719 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHT--TT-CHHHHHHH
T ss_pred HHHHccccHHHHHHHHhcc--CC-CHHHHHHH
Confidence 22 1 2334444444432 14 67776544
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.48 E-value=0.21 Score=44.53 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=48.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+++.++ ++++..|..||.+++.|+. ..... ....-..+.+.+..++.|++..||+.|..+|..++..-+
T Consensus 39 ll~~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 39 VLKDLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHHHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 555677 7889999999999998874 22110 001112344566778899999999999999999986543
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.43 E-value=0.8 Score=39.09 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
..++..+..|++.|......+++ .-++-+..++.++.|.|..||..|++.+..+|.. .+...+..++.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~-----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE-----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG-----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 46678888888887776665543 4566788889999999999999999999999865 234555555556
Q ss_pred hhCC
Q psy15255 183 CLLP 186 (199)
Q Consensus 183 ~l~d 186 (199)
+++.
T Consensus 108 lLqt 111 (507)
T 3u0r_A 108 LLQT 111 (507)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6665
No 110
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=91.17 E-value=1.4 Score=41.04 Aligned_cols=142 Identities=10% Similarity=0.126 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhh-cCcCCCCChHHHHHH
Q psy15255 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDN-DNIRRKICDAAAEVARNL-IDDAGNNLWPEFLQN 90 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~-~~vR~~~~~~ia~la~~~-l~~~~~~~WpeLl~~ 90 (199)
.|..+...+.-.+..+ +-.++++.+..|...++.+|.| +. ..||..++++.+.+++.. ... .=.++...
T Consensus 817 ~R~~~L~~lq~~~f~n----~f~l~~~~~~~i~~~v~~~L~D-~q~~EVRe~Aa~tLsgll~c~~~~~----~~~~li~~ 887 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAE----LLQLTEEEKNKILEFVVSNLYN-EQFVEVRVRAASILSDIVHNWKEEQ----PLLSLIER 887 (997)
T ss_dssp SHHHHHHHHHHHHHHH----TTTSCTTHHHHTHHHHTTTTTC-SSCHHHHHHHHHHHHHHHHSCCSHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCchh----hHHHHHHH
Confidence 7777776766666555 4457778888999999999999 77 999999999999998654 210 00111111
Q ss_pred HHHHHHHHHHhh-----------cccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 91 NLKSQIILLLQT-----------CDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 91 ~ik~~ll~~l~~-----------~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
+. ..+.. ..+...||.|.-.++.++...+=+...+.| |+++..|...+.++++ ++.++=+++
T Consensus 888 f~-----~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tl 961 (997)
T 1vsy_5 888 FA-----KGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTI 961 (997)
T ss_dssp HT-----TSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHH
T ss_pred HH-----HHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHH
Confidence 00 00100 001135666555555555444311111456 7888888777777665 999999999
Q ss_pred HhhhHhhhhhh
Q psy15255 159 TSVPEIFGNQE 169 (199)
Q Consensus 159 ~~i~e~~~~~l 169 (199)
+.|-....+..
T Consensus 962 seFkrTH~D~W 972 (997)
T 1vsy_5 962 SEFKKVRADTW 972 (997)
T ss_dssp HHHHHHTSTTH
T ss_pred HHHHhccchhH
Confidence 98766554443
No 111
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.90 E-value=4.7 Score=31.40 Aligned_cols=114 Identities=12% Similarity=0.308 Sum_probs=79.5
Q ss_pred CHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 37 AVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 37 ~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
+++--..+-..+++...+ ++..||+.++..+++..+.. ...=+..+++ |..++. ++++.|-+++..+.
T Consensus 47 dp~ll~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~-----L~~Ll~-d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVK-----VELLPHVINV-----VSMLLR-DNSAQVIKRVIQAC 114 (257)
T ss_dssp TGGGHHHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHH-----HHHHTT-CSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-----HHHHHc-CCCHHHHHHHHHHH
Confidence 344555666667775555 88999999999999998553 2233344443 556666 78899988888887
Q ss_pred HHHHHHhHh----hhc-----cCChH---HHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 117 AEVARNLID----DAG-----NNLWP---EFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 117 ~~i~~~~~~----~~~-----~~~~~---~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
+.+-..... ... ...|. .+...+++...+.+..+|..+++-+..++
T Consensus 115 ~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 115 GSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 777655543 111 24675 46677888888889999999999888766
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=90.59 E-value=0.044 Score=42.68 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=12.4
Q ss_pred HHHHhhCCCCCHHHhhhhh
Q psy15255 179 MLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 179 ~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+...++|+ +..||.++.
T Consensus 198 ~L~~Ll~D~-d~~VR~~aa 215 (244)
T 1lrv_A 198 DLLELLHDP-DWTVRLAAV 215 (244)
T ss_dssp GGGGGGGCS-SHHHHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHH
Confidence 345567786 888887764
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.16 E-value=9.8 Score=32.49 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=83.3
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-H
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-P 85 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-p 85 (199)
...++...++|+-++-+.++. ++.+.++.- ..++.+..+ ++..||.++-.-+..+.+. .| +
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~-----FP~l~~~Ai----~a~lDLcED-ed~~IR~qaik~Lp~~ck~--------~~i~ 99 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKH-----FPELADSAI----NAQLDLCED-EDVSIRRQAIKELPQFATG--------ENLP 99 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGG-----CGGGHHHHH----HHHHHHHTC-SSHHHHHHHHHHGGGGCCT--------TCHH
T ss_pred cCCCHHHHHHHHHHHHHHHhh-----ChhhHHHHH----HHHHHHHhc-ccHHHHHHHHHhhHHHhhh--------hhhh
Confidence 334678889999999888653 444444433 347788888 7777888755555544422 33 3
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
-+... |.++++ .+++.-+..+-.++..+....+ -..|-..+.+.. +++..+|+-++.-+..-+-.+
T Consensus 100 kiaDv-----L~QlLq-tdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl~~l 165 (507)
T 3u0r_A 100 RVADI-----LTQLLQ-TDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQIL-QGEDIVRERAIKFLSTKLKTL 165 (507)
T ss_dssp HHHHH-----HHHHTT-CCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHGGGS
T ss_pred hHHHH-----HHHHHh-ccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHc-ccchHHHHHHHHHHHHHHhhc
Confidence 34443 667888 5555555554456666665332 233444444433 357889988887775554333
Q ss_pred hhhh-H-HHHHHHHHHHHHhhCC
Q psy15255 166 GNQE-S-TYLVVIKQMLQQCLLP 186 (199)
Q Consensus 166 ~~~l-~-~~~~~l~~~l~~~l~d 186 (199)
+..+ . .--+.|..-+...++|
T Consensus 166 ~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 166 PDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp CTTTSCHHHHHHHHHHHHHHTTS
T ss_pred chhhccHHHHHHHHHHHHHHhcc
Confidence 3331 1 1123344444445554
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.04 E-value=7 Score=32.32 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
..+-..+++.-.+ ++..||+.++..+++..+... ..=+.+++. |..++. ++++.|.+++..+.+.+-.
T Consensus 62 ~~fl~~il~f~~d-~~~~vRk~~a~FieEa~~~~~-----el~~~~l~~-----L~~LL~-d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 62 DNFLDEIIAFQAD-KSIEVRKFVIGFIEEACKRDI-----ELLLKLIAN-----LNMLLR-DENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp GGGHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHH-----HHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 3344455555555 789999999999999987532 222444554 556666 7888888887777766654
Q ss_pred HhHh----hhc-----cCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 122 NLID----DAG-----NNLWPE---FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 122 ~~~~----~~~-----~~~~~~---ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
..+. ... ...|.. +...++....+.+..+|..+++.+..++
T Consensus 130 l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 130 VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 3332 111 145754 6677777777889999999999887766
No 115
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=88.07 E-value=1.4 Score=37.61 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++.+---||.-+++++...+. |...... ....+++++.++|+.||..|+.++.+++-
T Consensus 417 ~d~~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4566677789999999987764 2333333 57788999999999999999999999874
No 116
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=86.56 E-value=1.8 Score=33.26 Aligned_cols=62 Identities=13% Similarity=-0.087 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 135 FLQFLFQCANSDNT--TLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 135 ll~~l~~~~~~~~~--~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-+|.+.+.++++++ .++..|..++..++..-++.-... ....++.+...+.++ +++++..|+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa 73 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVC 73 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHH
Confidence 46777888888877 888888888888775433221111 123356777788887 899998876
No 117
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=86.33 E-value=12 Score=30.34 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|+..+. +.+.+....++.++..+..+.-.-.+.-..++++.-+...+.+.+..|-..|+.++-.++++.+....-....
T Consensus 165 Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~a 243 (339)
T 3dad_A 165 LIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRA 243 (339)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHH-hcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHH
Confidence 555665 6677777777777777665432111222368899999999998899999999999999998875432111111
Q ss_pred H-----------HHHHHHhhC---CCCCHHHhhhhh
Q psy15255 176 I-----------KQMLQQCLL---PPNPYSVQALQL 197 (199)
Q Consensus 176 l-----------~~~l~~~l~---d~~~~~Vr~~A~ 197 (199)
+ ...+...++ +. |.+++..|+
T Consensus 244 v~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~am 278 (339)
T 3dad_A 244 VNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTV 278 (339)
T ss_dssp HHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHH
T ss_pred HHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHH
Confidence 1 234445665 44 888887664
No 118
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.12 E-value=20 Score=31.76 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-HHH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-YLV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++-++.|+.++++.+-.+|..+++++..++...+..... ..+ .=++.+...+.|+ .+-+|-+|+
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneal 187 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGV 187 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHH
Confidence 466889999999999999999999999999887664332 221 2355667788887 777887765
No 119
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=84.73 E-value=1.1 Score=41.79 Aligned_cols=92 Identities=5% Similarity=0.022 Sum_probs=62.1
Q ss_pred HHHHHhhccc-HHHHHHHHHHHHHHHHHh-HhhhccCChHHHHHHHHHHhcC------------CCHHHHHHHHHHHHhh
Q psy15255 96 IILLLQTCDN-DNIRRKICDAAAEVARNL-IDDAGNNLWPEFLQFLFQCANS------------DNTTLKESALRLFTSV 161 (199)
Q Consensus 96 ll~~l~~~~~-~~vr~~a~~~i~~i~~~~-~~~~~~~~~~~ll~~l~~~~~~------------~~~~vr~~a~~~l~~i 161 (199)
++.++. ++. ..||..|+.+++.+.... .. ....+++..+.+.+.. .+...|.+|+-.|+++
T Consensus 848 v~~~L~-D~q~~EVRe~Aa~tLsgll~c~~~~----~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 848 VVSNLY-NEQFVEVRVRAASILSDIVHNWKEE----QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HTTTTT-CSSCHHHHHHHHHHHHHHHHSCCSH----HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHhc-CCccHHHHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 444555 778 899999999998887543 21 1223444444444422 1125778999999999
Q ss_pred hHhhhhhh--HHHHHHHHHHHHHhhCCCCCHHHhh
Q psy15255 162 PEIFGNQE--STYLVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 162 ~e~~~~~l--~~~~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
+..++-.. .++++.++..+.....|| .+ |+.
T Consensus 923 V~a~Py~vP~P~w~P~~l~~La~~~~~~-~~-i~~ 955 (997)
T 1vsy_5 923 ISAFPYVFPLPPWIPKNLSNLSSWARTS-GM-TGN 955 (997)
T ss_dssp HTTCSCCSSCCTHHHHHHHHHHTTSSSC-SS-HHH
T ss_pred HhhCCCCCCCCcccHHHHHHHHHHhCCC-Cc-hHH
Confidence 99888766 578888888887777776 54 543
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.44 E-value=7.6 Score=36.39 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTC---DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
+++.++ .+...+.+. +++.+|+.+.-..|.+++........+ -+++++. +...+.+.+. ..+..-+..++.++
T Consensus 389 t~e~l~-~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-~~~~v~~-i~~~l~~~~~-~~~~~~~~~~LkaL 464 (1056)
T 1lsh_A 389 TRESLS-YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-PDELLQP-LHDLLSQSSD-RAKEEEIVLALKAL 464 (1056)
T ss_dssp CHHHHH-HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-CGGGTHH-HHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-CHHHHHH-HHHHHHHHHh-cCChHHHHHHHHHh
Confidence 344444 344555442 467789988889999998877532221 1233332 2223445555 33333333333444
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCC
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCAN-------SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNP 189 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~ 189 (199)
+.+. -|..++.|..++. +....+|.+|+.+|..+....++. ..+.+.+++.+- + ++
T Consensus 465 GN~g-----------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---v~~il~~i~~n~--~-e~ 527 (1056)
T 1lsh_A 465 GNAG-----------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---VQEIVLPIFLNV--A-IK 527 (1056)
T ss_dssp HHHT-----------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---HHHHHHHHHHCT--T-SC
T ss_pred hccC-----------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---HHHHHHHHhcCC--C-CC
Confidence 3321 1344555555553 225678999999999988654332 223444444432 3 48
Q ss_pred HHHhhhhh
Q psy15255 190 YSVQALQL 197 (199)
Q Consensus 190 ~~Vr~~A~ 197 (199)
++||.+|+
T Consensus 528 ~EvRiaA~ 535 (1056)
T 1lsh_A 528 SELRIRSC 535 (1056)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 88999886
No 121
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=78.46 E-value=9.9 Score=32.36 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=59.7
Q ss_pred Hhhh----hccCHhhHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHH
Q psy15255 30 IEIY----SKLAVNDQNNLKSQIILLLQT---------CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQI 96 (199)
Q Consensus 30 ~~~~----~~l~~~~~~~ik~~ll~~L~~---------e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~l 96 (199)
+.+| .++.++.-+.+ ..|.+.|.+ +.++.+-.-+|+=+|+++|.. |. |..... +.-.|..+
T Consensus 379 e~FW~ENa~kf~e~~~~ll-k~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~-gr~i~~---~lg~K~~V 452 (480)
T 1ho8_A 379 NGFWSDNIDEFKKDNYKIF-RQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PE-SIDVLD---KTGGKADI 452 (480)
T ss_dssp HHHHHHHSGGGSSGGGHHH-HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHH---HHSHHHHH
T ss_pred hhHHHHHHHHHHhcchHHH-HHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cc-hhHHHH---HcCcHHHH
Confidence 4566 35655444444 478888874 357888899999999999874 31 222222 22347778
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 97 ILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 97 l~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
++++. ++++.||..|+.++..+..
T Consensus 453 M~Lm~-h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 453 MELLN-HSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHTS-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 88888 8999999999999987664
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=74.71 E-value=35 Score=30.96 Aligned_cols=92 Identities=16% Similarity=0.054 Sum_probs=61.7
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC---CCHHHHHHHHHHHHhhhHhhhhh--hHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS---DNTTLKESALRLFTSVPEIFGNQ--ESTY 172 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~vr~~a~~~l~~i~e~~~~~--l~~~ 172 (199)
.++. +.+..+...+..++..++-..+ ....--.|.++.-+..+++. .++.--.+|++++..++..+-.. ...|
T Consensus 346 ~g~f-SK~~~~~~~~~~~l~~La~l~P-~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~h 423 (799)
T 1vsy_4 346 LGSQ-NKNPDIANYYISCFAYLLELDP-SNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVH 423 (799)
T ss_dssp HHHT-CSSHHHHHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGH
T ss_pred HHhC-cCCcchHHHHHHHHHHHHhcCC-CccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 3444 6777777777777777664222 00012456777777777766 34444468899999999776543 4678
Q ss_pred HHHHHHHHHHhhCCCCCHHH
Q psy15255 173 LVVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~V 192 (199)
+..++.++..++..+ |+.=
T Consensus 424 l~~lL~l~LpgID~N-D~~K 442 (799)
T 1vsy_4 424 ITNVLSMLVSKLDMN-DTNL 442 (799)
T ss_dssp HHHHHHHHHHTCCSS-CHHH
T ss_pred HHHHHHHHhccCCcc-cHHH
Confidence 888888888888775 8753
No 123
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=73.47 E-value=15 Score=25.77 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 114 ~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
....+|+...... ....+++++..|.+-+++.++.+..-|+++|-+++..-.+.
T Consensus 30 ylm~EIA~~T~~s-~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~ 83 (140)
T 1vdy_A 30 YKLEEICDLLRSS-HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE 83 (140)
T ss_dssp HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHhc-chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH
Confidence 3345555543321 01246899999999999999999999999999998654433
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=72.12 E-value=16 Score=30.03 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
...+.+..|+-.+...-..-...-.-|..+..+..++.++++.+|..|+++++.+|.+-
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 44555556655543322110001122456888899999999999999999999988664
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.89 E-value=45 Score=24.86 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-.+.+..|.+-++++++.+...|+.++..++...++.+ ..+++.+..++.. .+ +++|+..++
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~-~~~Vk~kil 107 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TP-HENVRQKML 107 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CS-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CC-cHHHHHHHH
Confidence 444677788888999999999999999999998776543 3466666665543 33 778886554
No 126
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=59.41 E-value=45 Score=23.74 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+-+..|.+-+++.++.++..|+.++-.++...+..+ ..|++.+..++. ... ++.|+..++
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~---~~~-~~~Vk~kil 117 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK---NKA-HPKVCEKLK 117 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH---TTC-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc---cCC-CHHHHHHHH
Confidence 4667788888899999999999999999998876653 346666665553 223 778886554
No 127
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=55.69 E-value=54 Score=23.53 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhh-CCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCL-LPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l-~d~~~~~Vr~~A~ 197 (199)
.+-+..|.+-++++++.++..|+.++-.++...+..+ ..|++.+..++..-. .+..+++||..++
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 120 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI 120 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 4567788888999999999999999999998877654 345666555443111 1112677886654
No 128
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=55.55 E-value=88 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 147 NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 147 ~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
++.-...-+.-+..+++..++. +......+...+..|+.++ +-.|.-.|+.|
T Consensus 264 ns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~ 316 (403)
T 3fga_B 264 HSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYY 316 (403)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3333345555566666666543 4556667778888999998 99999888754
No 129
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=51.84 E-value=1.3e+02 Score=26.66 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=50.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh------HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW------PEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~------~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
|+.+++ +.+..+|..+.+++..+...-++ ..| |.=++.|...+.|+...+|-.|+.++..+...-
T Consensus 127 Ll~lL~-~~df~vR~~alqlL~~L~~~r~~----~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 127 LLSLLE-EFDFHVRWPGVKLLTSLLKQLGP----QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HHHHTT-CCCHHHHHHHHHHHHHHHHHSHH----HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-CccHHHHHHHHHHHHHHHhcCcH----HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 667887 88999999999999888765432 133 334577888888999999999999999887653
No 130
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=47.34 E-value=1.3e+02 Score=25.33 Aligned_cols=48 Identities=13% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 151 KESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 151 r~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
...-+.-+..+++..+.. +......+...+..|+.++ +-+|.-.|+.|
T Consensus 301 evlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~ 349 (449)
T 2npp_B 301 EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYY 349 (449)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 345555566666665544 4555666777888999997 99999888754
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.71 E-value=89 Score=23.39 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-.+-+..|.+-++++++.+...|+.++..++...+..+ ..+++.+..++.. .+ +++|+..++
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~---~~-~~~Vk~kil 110 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR---QV-EVNVRNKIL 110 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH---CC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc---CC-CHHHHHHHH
Confidence 345678888888999999999999999999998777643 3566666655531 23 677876544
No 132
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=45.78 E-value=73 Score=22.11 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.+-+.++..+.+-+....+..+..++.++..|+...+... ..|...++++|....... |+++|..
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~-d~~~r~k 104 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLV-DNTTRTK 104 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTS-CHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhC-CHHHHHH
Confidence 4667888888888887889999999999999998877654 345567788888777765 6777643
No 133
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=45.08 E-value=1.4e+02 Score=27.79 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHhcCC----CHHHHHHHHHHHHhhhHh
Q psy15255 130 NLWPEFLQFLFQCANSD----NTTLKESALRLFTSVPEI 164 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~----~~~vr~~a~~~l~~i~e~ 164 (199)
..-++++..++.++.++ ++.+|++++-+++.++..
T Consensus 387 ~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k 425 (1056)
T 1lsh_A 387 QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR 425 (1056)
T ss_dssp CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHH
Confidence 35567888888888763 677899999998888743
No 134
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=44.59 E-value=41 Score=25.27 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
|..+..+..++.++++.+|..+++.++.+|.+-
T Consensus 95 ~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 95 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 445778888888888999999998888877543
No 135
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=44.55 E-value=72 Score=23.63 Aligned_cols=55 Identities=15% Similarity=0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.+.+.+.+.+.|++.-+|+.|+... +.... ..+.+.+..++...+.|+ +.=|+.+
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~---~~~~~~~~~i~~~~~~d~-~~yV~ka 178 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQ---LMLKE---KTNQDLLKKAIIYDRTTE-EFFIQKA 178 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTT---TTCGG---GCCHHHHHHHHHHTTTCC-CHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH---HHHHH---CCCHHHHHHHHHHhCCCh-HHHHHHH
Confidence 3678889999999999998887744 22222 134466677777788886 7667754
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=43.82 E-value=1.3e+02 Score=24.34 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHh-hhccC--ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh------hhhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLID-DAGNN--LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI------FGNQ 168 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~-~~~~~--~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~------~~~~ 168 (199)
.+++ +++.-.|+.+...+++++-.=.. ..... .-++-+..++.++.|++..++..|+.+|--++-. +-+-
T Consensus 216 ~Ll~-S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~I 294 (341)
T 1upk_A 216 KLLH-SENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDI 294 (341)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHhc-CCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHH
Confidence 4566 78889999999999887642110 00011 2277889999999999999999999888877632 1111
Q ss_pred hHHHHHHHHHHHHHhhCCC
Q psy15255 169 ESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~ 187 (199)
+....+.++.++.....|.
T Consensus 295 L~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 295 LLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHTHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 3455678888888776665
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=43.73 E-value=77 Score=21.80 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+-+..+.+-+++.++.+...|+.++..++...+..+ ..|.+.+..++. .. +++|+...
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~----~~-~~~Vk~ki 105 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN----KG-HPKVCEKL 105 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH----HS-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc----cC-CHHHHHHH
Confidence 4567778888888999999999999999987776543 356666665553 23 66777544
No 138
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=43.12 E-value=98 Score=22.83 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHhh
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~~ 165 (199)
.+|..|+++++.|+....+ ....--|.+...+.+.+.|+ +....++|+..+..+-...
T Consensus 105 ~LRd~AA~lL~~I~~~~~~-~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~ 164 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSR-SYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNV 164 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHhCc-cCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHH
Confidence 6999999999999987643 12344577888888888876 7778899999988876543
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=40.63 E-value=1.4e+02 Score=24.02 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhHh--------------hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLID--------------DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~--------------~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.....|.+.+++++..++.+... ..+...|..|+..|.. -.+.|..++..|+..+.+++...+
T Consensus 213 s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~-~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 213 SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE-KNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT-TTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHhcCC
Confidence 45555655555555544433211 1133567777765432 125799999999999999987765
No 140
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.13 E-value=1.2e+02 Score=22.81 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH----HHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALR----LFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~----~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
|...+.+.+.+.|++.=+|..|+. .+.. ...+.. ..+.+.+...+...++|+ +.-|+.+.
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~-~~~v~kAi 171 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHS-PERTKSAM 171 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGS-CHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCC-hHHHHHHH
Confidence 667788899999999989998888 4444 222222 356677788888788886 77777653
No 141
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=38.51 E-value=18 Score=22.67 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=34.5
Q ss_pred ccccccCCCH-HHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc
Q psy15255 2 NIIQDAGRSV-EERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT 54 (199)
Q Consensus 2 ~~~~~~~~~~-~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~ 54 (199)
|.|++.+.|. .+|+| |+|.+..+ -..++-..+..+++.+.+.+..
T Consensus 14 qQLv~AGADLA~vrtm----lrnvm~g~----~valsr~e~~il~qHFPnm~~~ 59 (85)
T 3hgl_A 14 QQLVSEGADISHTRNM----LRNAMNGD----AVAFSRVEQNIFRQHFPNMPMH 59 (85)
T ss_dssp HHHHHTTCCHHHHHHH----HHHHHHTC----CCCCCHHHHHHHHHHCTTHHHH
T ss_pred HHHHHcCCCHHHHHHH----HHHHHcCc----hHhhhHHHHHHHHHHChhhhhc
Confidence 4566666664 78888 88888776 4567888888999998888877
No 142
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=38.40 E-value=1.5e+02 Score=23.65 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=59.0
Q ss_pred ccHHHHHH-HHHHHHHHHHHhHhhhccCChHHHHHHHHHHh----c---CCCHHHHHHHHHHHHhhhHhhhhhh----HH
Q psy15255 104 DNDNIRRK-ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA----N---SDNTTLKESALRLFTSVPEIFGNQE----ST 171 (199)
Q Consensus 104 ~~~~vr~~-a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~----~---~~~~~vr~~a~~~l~~i~e~~~~~l----~~ 171 (199)
..|..|-. ...+.+.|+..+.+ ...+..|.++..+|.+. . ++-|++|..=+..+.++....-+.+ .+
T Consensus 85 ~vp~aRepeVL~l~~tii~kl~~-~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~ 163 (321)
T 1w9c_A 85 NVPAAREPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPT 163 (321)
T ss_dssp SCGGGCCTHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHH
T ss_pred CCcccccHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHH
Confidence 33444432 34455555555543 33467788887777665 3 2479999999999999887755442 23
Q ss_pred HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 172 YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 172 ~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
....++.-+.-+++++ +.+|.-.++
T Consensus 164 ~fklvidsiiWa~kH~-~r~V~e~gL 188 (321)
T 1w9c_A 164 QFKLVLDSIIWAFKHT-MRNVADTGL 188 (321)
T ss_dssp HHHHHHHHHHHHTTCS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CchHHHHHH
Confidence 4566677777788887 777765443
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=37.34 E-value=1.8e+02 Score=24.34 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCC-C---CCHHHhhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLP-P---NPYSVQALQL 197 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d-~---~~~~Vr~~A~ 197 (199)
.....++..+.+|+++++-+|-+.|+.....= .+-.-+..+...|.+++...+.. . =+..||..|+
T Consensus 322 ~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~ 391 (449)
T 2npp_B 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 391 (449)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHH
Confidence 34466888888999999999988888765431 11111233455566665554421 1 1455665553
No 144
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=36.44 E-value=1.5e+02 Score=23.04 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccC--ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNN--LWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~--~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
...|..+..+|+.+++..-+ .... -..+++|.....++.++.--+..|..++.+|..
T Consensus 116 E~LRLtsLGVIgaLvK~dd~-eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQ-EVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCH-HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcH-HHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 45788888888887753211 0001 125789999999999999999999999999874
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=36.07 E-value=1.1e+02 Score=21.30 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHh-hCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQC-LLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~-l~d~~~~~Vr~~A~ 197 (199)
.+-+..+.+-++++++.+...|+.++-.++...+..+ ..|++.+..++..- ..+..+++|+..++
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 108 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI 108 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence 3567778888889999999999999999998877664 23444443322210 01112677876544
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.85 E-value=1.1e+02 Score=21.34 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHHHHHHHHHhh-CCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE------STYLVVIKQMLQQCL-LPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~l~~~l~~~l-~d~~~~~Vr~~A~ 197 (199)
.+-+..|.+-++++++.+...|+.++-.++...+..+ ..|++.+..++..-. .+..+++|+...+
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 4567788888899999999999999999998777654 345666554443110 0112677875543
No 147
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=34.93 E-value=1.9e+02 Score=23.79 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 152 ESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
..-+.-+..+++..+.. +......+...+..|+.++ +-+|.-.|+.|
T Consensus 314 vlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~-hfqVAErAL~~ 361 (392)
T 2jak_A 314 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYY 361 (392)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 34445556666665544 4555667777789999997 99999888754
No 148
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=30.38 E-value=2.7e+02 Score=24.18 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=45.6
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhcc------CChHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGN------NLWPEFLQFLFQCA-NSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~------~~~~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.+++ .+...+-+++.+.+..+...+.+.... ...-.+.+.+...+ .+|+...|..|+.++..+...++++
T Consensus 324 ~lL~-~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~e 400 (596)
T 4f52_E 324 VFLQ-RTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQ 400 (596)
T ss_dssp HHHT-CCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCHH
T ss_pred HHHc-CCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCChH
Confidence 3444 777788888888777666555331111 11233445554444 4789999999999999998777654
No 149
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=29.38 E-value=3.2e+02 Score=24.70 Aligned_cols=124 Identities=14% Similarity=0.038 Sum_probs=75.4
Q ss_pred ccCHhhHHHHHH----HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-HHHHHHHHHHHHHhh--cccHH
Q psy15255 35 KLAVNDQNNLKS----QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQNNLKSQIILLLQT--CDNDN 107 (199)
Q Consensus 35 ~l~~~~~~~ik~----~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-l~~~ik~~ll~~l~~--~~~~~ 107 (199)
+++++.+..+.. .++.++.+ .+..++..+..++..|+-..- .. |++ +|..+. .+...++. -.+++
T Consensus 327 ~Lt~~~~~~fV~~l~p~~~~g~fS-K~~~~~~~~~~~l~~La~l~P-----~~-~~lVlP~vL~-r~y~sLe~~~l~e~H 398 (799)
T 1vsy_4 327 CLTSFCHEEIVEIFLNIISLGSQN-KNPDIANYYISCFAYLLELDP-----SN-AYLIYDKILI-DLYDTLADQFINSRH 398 (799)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTCC-----TT-HHHHHHHHHH-HHHHHHTTTTTTCHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHHhcCC-----Cc-cceehHHHHH-HHHHHhccccccchh
Confidence 567776655444 45566666 788888888888888874320 00 143 554433 23344543 34555
Q ss_pred HHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 108 IRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 108 vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
-...++.++..++..+.... ...+...++..+..++.-.|+.--..+++.+..++..++
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 44567788888887776421 123445555555666655688777888999888876543
No 150
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=25.13 E-value=4.8e+02 Score=25.28 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=40.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH
Q psy15255 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL 173 (199)
Q Consensus 102 ~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~ 173 (199)
.+.++.++.-+...-..+.... + ...-.+++..|..-+.+++..--.+|+.++..+++..++.+.++.
T Consensus 410 ~S~~~~v~~Fg~~lY~~lF~~f-d---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 410 HSQDQRIILFGSLLYKYAFKFF-D---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS-C---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred hCCCHHHHHHHHHHHHHHHHhc-c---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 3777788776555544444322 2 123467777777766555544455688888888776555554433
No 151
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=23.57 E-value=96 Score=21.43 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.+..++|.|+..+||.+|.+.......|..+.
T Consensus 28 ~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~ 59 (134)
T 3ut4_A 28 EIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ 59 (134)
T ss_dssp HHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc
Confidence 44556667777777777766665555555543
No 152
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=23.36 E-value=53 Score=20.83 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=34.7
Q ss_pred ccccccCCCH-HHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc
Q psy15255 2 NIIQDAGRSV-EERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT 54 (199)
Q Consensus 2 ~~~~~~~~~~-~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~ 54 (199)
|.|++.+.|. .+|+| |||.+..+ -.-++-..++.+++.+.+.+..
T Consensus 12 qQlv~aGadLa~~rtm----lrn~m~g~----~valsr~eq~Il~qHFPnM~~~ 57 (94)
T 3tjy_A 12 QQLVEAGADLANIRTM----FRNMLRGE----EMILSRAEQNVFLQHFPDMLPC 57 (94)
T ss_dssp HHHHHTTCCHHHHHHH----HHHHHTTC----CCCCCHHHHHHHHHHCTTHHHH
T ss_pred HHHHHhcccHHHHHHH----HHHHHcCC----chhhhHHHHHHHHHHCcccccc
Confidence 4556666663 68887 99998887 5567888888999998888877
No 153
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=22.64 E-value=68 Score=16.10 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.0
Q ss_pred hccCHhhHHHHHHHHHHH
Q psy15255 34 SKLAVNDQNNLKSQIILL 51 (199)
Q Consensus 34 ~~l~~~~~~~ik~~ll~~ 51 (199)
..+++++++.+|..+|..
T Consensus 7 gsiseetkqklk~~ils~ 24 (35)
T 1n6j_G 7 GSISEETKQKLKSAILSA 24 (35)
T ss_dssp SCCCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHhh
Confidence 358899999999887653
No 154
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=22.56 E-value=1.7e+02 Score=24.10 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
.....++..+.+|+++++-+|-+.|+..... +.+-.-+..+...|.+++.
T Consensus 334 ~i~~~lF~~la~ci~S~hfqVAErAL~~wnN--e~i~~li~~n~~~ilPii~ 383 (392)
T 2jak_A 334 KIMEPLFRQLAKCVSSPHFQVAERALYYWNN--EYIMSLISDNAAKILPIMF 383 (392)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHGGGGC--HHHHHHHHHTHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHhCc--HHHHHHHHhhhccchhhhh
Confidence 4456788888899999999998888876654 1111112344555555543
No 155
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=22.15 E-value=2.9e+02 Score=21.65 Aligned_cols=102 Identities=8% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHh-hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYL 173 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~ 173 (199)
++..+.....+.-+..++++++.++..-.. .....+.+.++..+..+..+++..+|.++..++..+.-...++ -.+..
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~ 231 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK 231 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH
Q ss_pred HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 174 VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 174 ~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+...+...++..+|+|+..-++
T Consensus 232 ~~ll~~l~~il~~~~d~EalyR~L 255 (304)
T 3ebb_A 232 AQCLSLISTILEVVQDLEATFRLL 255 (304)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHH
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.11 E-value=2.2e+02 Score=19.86 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhh------HHHHHH-HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQE------STYLVV-IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l------~~~~~~-l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+-+..+.+-++ ++++.++..|+.++-.++...++.+ ..+++. +..++.. -.++ +..|+..++
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~-k~~~-~~~Vk~kil 122 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILP-KNNP-PTIVHDKVL 122 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHST-TTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhcc-CCCC-cHHHHHHHH
Confidence 466777888887 5799999999999999998876654 234554 3333311 1233 567876554
No 157
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=20.69 E-value=1.5e+02 Score=18.27 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=20.4
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhc
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQT 54 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~ 54 (199)
.++..++++.+|..+-..+-++|.+
T Consensus 42 Tnlln~V~~~qR~~iAe~Fa~AL~~ 66 (76)
T 2jr2_A 42 TNIIAQVPESKRVAVVDNFTKALKQ 66 (76)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3446688999999999999888887
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.22 E-value=2.2e+02 Score=19.57 Aligned_cols=61 Identities=7% Similarity=-0.051 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
..+.-+..++.++-.|+......+....++.|.+.+.......++.+|....+++..=-+.
T Consensus 55 ~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 55 CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 4456666677777777766533221223455666666666667888998888877665533
No 159
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=20.21 E-value=3.7e+02 Score=22.16 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh----CCCCCHHHhhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL----LPPNPYSVQALQL 197 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l----~d~~~~~Vr~~A~ 197 (199)
.....++..+..|++|++-+|-+.|+..... +.+-.-+.++...|.+++...+ ...=+..|+..|+
T Consensus 289 ~i~~~lf~~la~ci~S~hfqVAErAL~~wnN--e~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~ 358 (403)
T 3fga_B 289 KIMEPLFRQLAKCVSSPHFQVAERALYYWNN--EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 358 (403)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC--HHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc--HHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3445678888899999999999988876643 1111112334444544443332 2212667775554
Done!