RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15255
         (199 letters)



>gnl|CDD|215290 PLN02531, PLN02531, GTP cyclohydrolase I.
          Length = 469

 Score = 29.4 bits (66), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 125 DDAGNNLWPEFLQFL-FQCANSDNTTLKESA 154
           +D   NLW EF+  L F+  N D    K+S+
Sbjct: 218 EDESGNLWEEFVSLLQFRGINVDKRCRKDSS 248


>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain
           found in the RGS17 protein.  The RGS (Regulator of
           G-protein Signaling) domain is an essential part of the
           RGS17 protein, a member of  the RZ subfamily of the RGS
           protein family.  They are a diverse group of
           multifunctional proteins that regulate cellular
           signaling events downstream of G-protein coupled
           receptors (GPCRs). As a major G-protein regulator, the
           RGS domain containing proteins are involved in many
           crucial cellular processes such as regulation of
           intracellular trafficking, glial differentiation,
           embryonic axis formation, skeletal and muscle
           development, and cell migration during early
           embryogenesis. RGS proteins play critical regulatory
           roles as GTPase activating proteins (GAPs) of the
           heterotrimeric G-protein G-alpha-subunits. Deactivation
           of the G-protein signaling controlled by the RGS domain,
           which accelerates GTPase activity of the alpha subunit
           by hydrolysis of GTP to GDP, results in reassociation of
           the alpha-subunit with the beta-gamma-dimer and
           inhibition of downstream activity. The RZ subfamily of
           RGS proteins includes RGS19 (former GAIP), RGS20, and
           its splice variant Ret-RGS. RGS17 is a relatively
           non-selective GAP for G-alpha-z and other G-alpha-i/o
           proteins. RGS17 blocks dopamine receptor-mediated
           inhibition of cAMP accumulation; it also blocks
           thyrotropin releasing hormone-stimulated Ca++
           mobilization. RGS17, like other members of RZ subfamily,
           can act either as a GAP or as G-protein effector
           antogonist.
          Length = 118

 Score = 27.4 bits (60), Expect = 3.2
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 127 AGNNLWPEFLQ---------FLFQCAN----SDNTTLKESALRLFTSVPEIFGNQESTYL 173
           AG NL+ EFL+         F   C +     +   ++E A  ++     I   +E +  
Sbjct: 13  AGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARLIYEDYISILSPKEVSLD 72

Query: 174 VVIKQMLQQCLLPPNPYSVQALQLK 198
             +++++ + LL PNP+  +  QL+
Sbjct: 73  SRVREVINRNLLDPNPHMYEDAQLQ 97


>gnl|CDD|165328 PHA03030, PHA03030, hypothetical protein; Provisional.
          Length = 122

 Score = 27.2 bits (60), Expect = 3.2
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 52  LQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQT--CDNDNIR 109
           +   DND I + I D   E     I++   N+  E      + ++I L Q    D++ +R
Sbjct: 47  IDNFDNDLINKFIQDMIIETRIKEIEEEIENIISELNDKEEEKELIELDQPKEIDDEIVR 106

Query: 110 RKICDAAAEV 119
           +K+ DA  E+
Sbjct: 107 KKLIDAKDEI 116


>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent,
           prokaryotic type.  Several NAD- or NADP-dependent
           dehydrogenases, including 3-isopropylmalate
           dehydrogenase, tartrate dehydrogenase, and the
           multimeric forms of isocitrate dehydrogenase, share a
           nucleotide binding domain unrelated to that of lactate
           dehydrogenase and its homologs. These enzymes
           dehydrogenate their substates at a H-C-OH site adjacent
           to a H-C-COOH site; Prokaryotic NADP-dependent
           isocitrate dehydrogenases resemble their NAD-dependent
           counterparts and 3-isopropylmalate dehydrogenase (an
           NAD-dependent enzyme) more closely than they resemble
           eukaryotic NADP-dependent isocitrate dehydrogenases
           [Energy metabolism, TCA cycle].
          Length = 416

 Score = 27.9 bits (62), Expect = 3.5
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 5/36 (13%)

Query: 165 FGNQESTYLVVIKQ-----MLQQCLLPPNPYSVQAL 195
           + N      +VIK       LQQ L  P+ Y V A 
Sbjct: 266 YKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIAT 301


>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
          Length = 509

 Score = 27.4 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 52  LQTCDNDNIRRKICDAAAEVARNLIDDA 79
           L +  +D I  +IC++AA++A NL  DA
Sbjct: 385 LSSSLSDRISEEICNSAAKMANNLGVDA 412



 Score = 27.4 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 100 LQTCDNDNIRRKICDAAAEVARNLIDDA 127
           L +  +D I  +IC++AA++A NL  DA
Sbjct: 385 LSSSLSDRISEEICNSAAKMANNLGVDA 412


>gnl|CDD|197254 cd09157, PLDc_CLS_unchar2_1, Putative catalytic domain, repeat 1,
           of uncharacterized proteins similar to bacterial
           cardiolipin synthase.  Putative catalytic domain, repeat
           1, of uncharacterized proteins similar to bacterial
           cardiolipin (CL) synthases, which catalyze the
           reversible phosphatidyl group transfer between two
           phosphatidylglycerol molecules to form CL and glycerol.
           Members of this subfamily contain two HKD motifs
           (H-x-K-x(4)-D, where x represents any amino acid
           residue) that characterizes the phospholipase D (PLD)
           superfamily. The two motifs may be part of the active
           site and may be involved in phosphatidyl group transfer.
          Length = 155

 Score = 26.8 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 104 DNDNIRRKICDAAAEVARN------LIDDAGNN-LWPEFLQFL 139
           DND + R+  DA AE          LID  G     P   + L
Sbjct: 29  DNDGVGREFVDALAEAVARGVDVRVLIDGVGARYSRPSIRRRL 71



 Score = 26.8 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 6/31 (19%)

Query: 56 DNDNIRRKICDAAAEVARN------LIDDAG 80
          DND + R+  DA AE          LID  G
Sbjct: 29 DNDGVGREFVDALAEAVARGVDVRVLIDGVG 59


>gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino
          acid transport and metabolism].
          Length = 349

 Score = 26.8 bits (60), Expect = 8.7
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 13/56 (23%)

Query: 43 NLKSQIILLLQTCDNDNIRRKICDAA-----AEVARNLIDDAGNNLWPEFLQNNLK 93
          NL+  + L  QT D + I    CD         V+  L+        PE L+   K
Sbjct: 49 NLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVSAELV--------PELLEAGCK 96


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,866,799
Number of extensions: 895698
Number of successful extensions: 735
Number of sequences better than 10.0: 1
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 25
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)