RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15255
(199 letters)
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 65.6 bits (159), Expect = 6e-13
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 15/146 (10%)
Query: 49 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNI 108
+L +++ R + + +N + N + + +KS+ + +
Sbjct: 53 VLTKLKSEDEPTRS----LSGLILKNNVKAHFQNFPNG-VTDFIKSECLNNIGDSS---- 103
Query: 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE----- 163
I + + WP+ L L +S++ E A + E
Sbjct: 104 -PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 164 IFGNQESTYLVVIKQMLQQCLLPPNP 189
+ + L ++ Q +P
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSP 188
Score = 58.7 bits (141), Expect = 2e-10
Identities = 18/193 (9%), Positives = 47/193 (24%), Gaps = 23/193 (11%)
Query: 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRR 62
+ + R +S ++L+ + + +KS+ + +
Sbjct: 54 LTKLKSEDEPTRSLSGLILKNNVKA----HFQNFPNGVTDFIKSECLNNIGDSS-----P 104
Query: 63 KICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK------ICDAA 116
I + + WP+ L L D+++ +
Sbjct: 105 LIRATVGILITTIASKGELQNWPDLLPK--------LCSLLDSEDYNTCEGAFGALQKIC 156
Query: 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVI 176
+ A L D + + Q + ++ A+ ++
Sbjct: 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 216
Query: 177 KQMLQQCLLPPNP 189
+ L P
Sbjct: 217 IENLFALAGDEEP 229
Score = 36.7 bits (84), Expect = 0.004
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 5/164 (3%)
Query: 28 DFIEIYSKLAVNDQNNLKSQII-LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE 86
+ +E + + N+ + L + + + ++ L+ N +
Sbjct: 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV----NGMKYS 311
Query: 87 FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD 146
+ L + D+ + +A L + + L P L L +
Sbjct: 312 DIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH 371
Query: 147 NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190
+KES + + ++ E YL + L QCL
Sbjct: 372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 415
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 63.3 bits (153), Expect = 4e-12
Identities = 20/184 (10%), Positives = 49/184 (26%), Gaps = 45/184 (24%)
Query: 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIR 61
++ D +E R ++A+ L+ + + A +
Sbjct: 46 QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQV----------------- 88
Query: 62 RKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121
+N +K+ + L + I A +A
Sbjct: 89 -----------------------SPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIAD 124
Query: 122 NLIDDAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180
+ + WPE ++ + + +K ++L + E Q + +L
Sbjct: 125 I---ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181
Query: 181 QQCL 184
+
Sbjct: 182 IAIV 185
Score = 37.9 bits (87), Expect = 0.002
Identities = 19/180 (10%), Positives = 55/180 (30%), Gaps = 6/180 (3%)
Query: 6 DAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKIC 65
A + ++ S + L + E + ++ + +I ++Q + + +
Sbjct: 144 GAEQPENVKRASLLALGYMC-----ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 66 DAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125
AA + + NN+ E +N L Q++ ++ ++ ++
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYL-MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257
Query: 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLL 185
+ S N + + ++++ E + + LQ
Sbjct: 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF 317
Score = 36.3 bits (83), Expect = 0.004
Identities = 15/146 (10%), Positives = 37/146 (25%), Gaps = 12/146 (8%)
Query: 51 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ------------NNLKSQIIL 98
L+ + + +A +++ A + + ++ +
Sbjct: 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562
Query: 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158
L ++ I A V R F D+ +++
Sbjct: 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622
Query: 159 TSVPEIFGNQESTYLVVIKQMLQQCL 184
+++ G YL L + L
Sbjct: 623 SALAASLGKGFEKYLETFSPYLLKAL 648
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 52.2 bits (124), Expect = 3e-08
Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 28/204 (13%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQ 53
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG 100
Query: 54 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKIC 113
A +A + N WPE + L+ N N +
Sbjct: 101 --TETYRPSSASQCVAGIAC---AEIPVNQWPELIPQ--------LVANVTNPNSTEHMK 147
Query: 114 DAAAEVARNLIDDAGNNLWPEF----LQFLFQCANSD--NTTLKESALRLFTSVPEIFGN 167
++ E + D + L + Q + + +K +A + E
Sbjct: 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207
Query: 168 QESTYLVV--IKQMLQQCLLPPNP 189
I Q++ + P+
Sbjct: 208 NFDKESERHFIMQVVCEATQCPDT 231
Score = 49.1 bits (116), Expect = 3e-07
Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 14/160 (8%)
Query: 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-------DAGNNLWPEFLQNNLK 93
NL + ++ L + N + AA +N + W N +
Sbjct: 30 VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89
Query: 94 SQIILLLQT-CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTT--L 150
+L T A +A + N WPE + L + N+T +
Sbjct: 90 EVKNYVLHTLGTETYRPSSASQCVAGIAC---AEIPVNQWPELIPQLVANVTNPNSTEHM 146
Query: 151 KESALRLFTSVPE-IFGNQESTYLVVIKQMLQQCLLPPNP 189
KES L + + I Q I + Q + P
Sbjct: 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Score = 28.3 bits (62), Expect = 2.3
Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 50 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIR 109
+ T + ++ A + + L + + F + + L+ +
Sbjct: 614 MFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPF-----LGIGLKNYAEYQVC 667
Query: 110 RKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT--TLKESALRLFTSVPEIFGN 167
++ R L + E +Q L + ++N ++K L +F + G
Sbjct: 668 LAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726
Query: 168 QESTYLVVIKQMLQQCL 184
+ YL V+ LQQ
Sbjct: 727 EFKKYLEVVLNTLQQAS 743
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 51.0 bits (121), Expect = 6e-08
Identities = 23/204 (11%), Positives = 59/204 (28%), Gaps = 28/204 (13%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQ 53
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG 100
Query: 54 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKIC 113
A +A + N WPE + L+ N N +
Sbjct: 101 --TETYRPSSASQCVAGIAC---AEIPVNQWPELIPQ--------LVANVTNPNSTEHMK 147
Query: 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQ------CANSDNTTLKESALRLFTSVPEIFGN 167
++ E + D + + + +K +A + E
Sbjct: 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207
Query: 168 QESTYLVV--IKQMLQQCLLPPNP 189
I Q++ + P+
Sbjct: 208 NFDKESERHFIMQVVCEATQCPDT 231
Score = 48.3 bits (114), Expect = 4e-07
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI-------DDAGNNL 83
+ + AV + ++ +L N + R AA +N +
Sbjct: 23 KFLERAAVENLPTFLVELSRVLANPGNSQVARV---AAGLQIKNSLTSKDPDIKAQYQQR 79
Query: 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA 143
W N + +LQT + + A+ VA + N WPE + L
Sbjct: 80 WLAIDANARREVKNYVLQTLGTET--YRPSSASQCVAGIACAEIPVNQWPELIPQLVANV 137
Query: 144 NSDNTTL--KESALRLFTSV-PEIFGNQESTYLVVIKQMLQQCLLPPNP 189
+ N+T KES L + +I Q I + Q + P
Sbjct: 138 TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Score = 34.4 bits (78), Expect = 0.019
Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 22/183 (12%)
Query: 27 TDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE 86
+ +Y + I + D D + + + + V +D A E
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA--SE 299
Query: 87 FLQNNLKSQIILLL-------------------QTCDNDNIRRKICDAAAEVARNLIDDA 127
+ + Q ++D+ C AA L
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE-IFGNQESTYLVVIKQMLQQCLLP 186
+++ P L F+ + + + +++A+ F + E +Q ++ L + +
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 187 PNP 189
P+
Sbjct: 420 PSV 422
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 6e-06
Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 49/190 (25%)
Query: 21 LRKIFSTDFIEIYSKLAVNDQNNLKSQIILL---LQTCDNDNIRRKICDAAAEVARNLID 77
L++ F+ E A +D+ + L+ L + +V +
Sbjct: 33 LQEQFNKILPEPTEGFAADDE--PTTPAELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLT 89
Query: 78 DAGNNLWPEFLQ-NNLKSQIILLLQTCDNDNIRRK-ICDA---AAEVARNLIDDAGNNLW 132
+ N +L+ N++ + LLQ D ++ K + A +A+ D N+
Sbjct: 90 EFENC----YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA- 144
Query: 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--------E-----STYLVVIKQM 179
LF+ N +L IFG Q E TY V++ +
Sbjct: 145 ------LFRAVGEGNA-------QLVA----IFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 180 LQ---QCLLP 186
++ + L
Sbjct: 188 IKFSAETLSE 197
Score = 30.0 bits (67), Expect = 0.58
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 41/152 (26%)
Query: 67 AAAEVARNLIDDAGNNLWPEF-------LQNNLKSQIILLLQTCDNDNIR-RKICDAAAE 118
++ A+++ + A N+ + + NN + I + ++I + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH------FGGEKGKRIRENYSA 1690
Query: 119 VARNLIDDAGNNLWPEFLQFLFQCANSDNTTLK----ESALRL--FTSVPEIFGNQESTY 172
+ I D +F+ N +T+ + L FT P +
Sbjct: 1691 MIFETIVDGKLKTEK-----IFKEINEHSTSYTFRSEKGLLSATQFTQ-PALT----LME 1740
Query: 173 LVVIKQMLQQCLLPPNP---------YSVQAL 195
+ + + L+P + Y+ AL
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYA--AL 1770
Score = 28.5 bits (63), Expect = 1.9
Identities = 38/244 (15%), Positives = 81/244 (33%), Gaps = 75/244 (30%)
Query: 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKL----AVNDQNNLKSQ-----IILLLQ 53
+I+ + ++ E + + K+F+ I L D++ L S +I ++Q
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 54 ------TCDN-----DNIRRKICDAAAEVARNLI--------DDAGNNLWPEFLQNNLKS 94
T +R + A ++ L+ D W F + K+
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDS-----WESFFVSVRKA 299
Query: 95 QIILLL------QTCDNDNIRRKICDAAAEVARNLIDDAG--------NNLWPEFLQ-FL 139
+L + N ++ I + + E + G +NL E +Q ++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLEN------NEGVPSPMLSISNLTQEQVQDYV 353
Query: 140 FQCANSDNTTLKESALRLFTSV---PEIF---GNQESTYLVVIKQMLQQCLLPPN----- 188
+ N+ L ++ S+ + G +S L + L++ P
Sbjct: 354 NKT----NSHLPAGK-QVEISLVNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSGLDQSR 406
Query: 189 -PYS 191
P+S
Sbjct: 407 IPFS 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 8e-05
Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 57/224 (25%)
Query: 7 AGRSVEERQMSAVLLR----------KIFSTDFIEIYS-KLAVNDQNNLKSQIIL-LLQT 54
+G++ ++ + KIF + S + + L QI
Sbjct: 161 SGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 55 CDN-DNIRRKICDAAAEVARNLI------------DDAGN-NLWPEFLQNNLKSQIILLL 100
D+ NI+ +I AE+ R L+ + N W F NL +I LL
Sbjct: 217 SDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI--LL 270
Query: 101 QTCDNDNIRRKICDA--AAEVARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESAL-- 155
T +++ D AA +D L P E L + + L L
Sbjct: 271 TTRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 156 --RLFTSVPEIFGNQEST---YLVV----IKQMLQQCL--LPPN 188
R + + E + +T + V + +++ L L P
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 37.2 bits (85), Expect = 0.003
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 48 IILLLQTCDNDNIRRKICDAAAEVARNLI-----DDAGNNLWPEFLQNNLKSQIILLLQT 102
+ LL + N+ A A +N I D+ GN+L P +K +I+ L+ +
Sbjct: 37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS 96
Query: 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162
N N++ +I +A + +A + D WP L L ++D+ + L + S+
Sbjct: 97 LPN-NLQVQIGEAISSIADSDFPDR----WPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151
Query: 163 EIFGNQEST 171
+ + +
Sbjct: 152 KRWRPLFRS 160
Score = 36.1 bits (82), Expect = 0.006
Identities = 22/182 (12%), Positives = 66/182 (36%), Gaps = 10/182 (5%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAV--NDQNNLKSQIILLLQTCDND 58
+++I + R A+ + +++ + N+ +K +I+ L+ + N
Sbjct: 41 LHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPN- 99
Query: 59 NIRRKICDAAAEVARNLIDDAGNNLWPEFL-----QNNLKSQIILLLQTCDNDNIRRKIC 113
N++ +I +A + +A + D L + + + ++ +L + R
Sbjct: 100 NLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159
Query: 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQC--ANSDNTTLKESALRLFTSVPEIFGNQEST 171
+ L+ D + L+ + + AN +N + + +++ +
Sbjct: 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ 219
Query: 172 YL 173
+
Sbjct: 220 DI 221
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 34.2 bits (77), Expect = 0.025
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIIL 98
+ L + +R ++ +++ N + + LK+ ++
Sbjct: 42 EKCPICVPCGLRLAEKTQVAIVRH----FGLQILEHVVKFRWNGM-SRLEKVYLKNSVME 96
Query: 99 LLQTCDNDNIR--RKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156
L+ + + I DA + + +I WP+ L L + T E +
Sbjct: 97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMF 155
Query: 157 LFTSVPE 163
+ + E
Sbjct: 156 ILLRLAE 162
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 32.3 bits (73), Expect = 0.088
Identities = 13/123 (10%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIIL 98
+ L+ ++ + Q ++D+++ ++ +A R ++ +Q + +++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQL--SATVKFRQILSREHRPPIDVVIQAGVVPRLVE 137
Query: 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158
++ + ++ + A +A + + + Q + + +KE A+
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 197
Query: 159 TSV 161
+V
Sbjct: 198 GNV 200
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 31.8 bits (71), Expect = 0.16
Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 51 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE---FLQNNLKSQIILLLQTCDNDN 107
+LQ N + A + LI L + ++N + II + Q +
Sbjct: 56 ILQFSTNPQSKF----IALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFK 111
Query: 108 IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163
++ + + + ++ WPEF+ L ++S + + E+ + + + E
Sbjct: 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSE 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.17
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 146 DNTTLK--ESALRLFT--SVPEI 164
+ LK +++L+L+ S P +
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
Score = 27.6 bits (60), Expect = 1.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 176 IKQMLQQCLLPPNPYSVQALQLK 198
+K+ LQ L S AL +K
Sbjct: 22 LKK-LQASLKLYADDSAPALAIK 43
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 31.4 bits (70), Expect = 0.23
Identities = 15/126 (11%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105
+++ +L+ N N + ++ N+I L P +K ++ L+ +
Sbjct: 63 TRVDTILEFSQNMNTKY----YGLQILENVIKTRWKIL-PRNQCEGIKKYVVGLIIKTSS 117
Query: 106 DN--------IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRL 157
D K+ ++ + WP F+ + + + + ++ + +
Sbjct: 118 DPTCVEKEKVYIGKLNMILVQILKQE----WPKHWPTFISDIVGASRTSESLC-QNNMVI 172
Query: 158 FTSVPE 163
+ E
Sbjct: 173 LKLLSE 178
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 30.0 bits (68), Expect = 0.51
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 44 LKSQIILLLQTCDNDNIRRKICD--AAAEVARNLIDDAGNNLW--PEFLQNN 91
L+S I L +N + K+ D + + ++ GN W PE +
Sbjct: 150 LRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAE 201
Score = 29.6 bits (67), Expect = 0.59
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 92 LKSQIILLLQTCDNDNIRRKICD--AAAEVARNLIDDAGNNLW--PEFLQ 137
L+S I L +N + K+ D + + ++ GN W PE +
Sbjct: 150 LRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIG 199
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta
structure, transcription; 2.90A {Sulfolobus tokodaii}
Length = 199
Score = 28.5 bits (64), Expect = 1.0
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 158 FTSVPEIFGNQESTYLVVIKQMLQQ-CLLPPNPYSVQAL 195
FT + G E+T L + ++ P Y + L
Sbjct: 113 FTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPEL 151
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.8 bits (64), Expect = 1.2
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDND 106
I+ + + + ++ + A + AR L+ ++ L + + L D
Sbjct: 61 DIVKGINSNNLESQLQ-----ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 115
Query: 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESAL 155
I+ + A +A + + + S + + E A+
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 164
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Length = 535
Score = 28.7 bits (64), Expect = 1.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKES 153
+AAA+ AR L++ + L ++ Q L++ + ES
Sbjct: 221 EAAAKTARILVESGKHGLLKDYEQ-LWKNTCNGTWDPTES 259
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein
structure initiative, PSI, structural genomics; 1.70A
{Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A
1zwl_A*
Length = 200
Score = 27.7 bits (62), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 158 FTSVPEIFGNQESTYLVVIKQMLQQ-CLLPPNPYSVQAL 195
FTS + G QE+T L ++ +L L+ PYS AL
Sbjct: 114 FTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPAL 152
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 27.2 bits (60), Expect = 4.7
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILL 99
N L +I L D +++ + R I D +PE L +++ +
Sbjct: 57 AHNGLSERISAALAKLDVEDVAE--LARVGKEIRQWILDTP---FPEQLDAEIEAAWNKM 111
Query: 100 LQTCDNDNIR 109
+ +I
Sbjct: 112 VADAGGADIS 121
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 26.4 bits (59), Expect = 6.5
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 29 FIEIYSKLA-------VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 77
++ L V ++ L +++ LL + K+ + + E+ ++
Sbjct: 314 VNDLKEFLEKEGAGFEVKNETELVTKLTELL----SVKKEIKVEEKSREIKGCYLE 365
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 26.4 bits (57), Expect = 7.1
Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Query: 37 AVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQI 96
+ D +L +Q++ L+ N++ + E ++ D+ + + L L
Sbjct: 151 RIVDGKDLTAQMMQLISVA-PVNLQHDFITSLPE----ILGDSQHANVGKELGELLVQNT 205
Query: 97 ILLLQTCD---NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKES 153
L + D + + ++ + +P ++FL + +
Sbjct: 206 SLTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIA 265
Query: 154 ALR 156
LR
Sbjct: 266 ELR 268
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 26.2 bits (57), Expect = 8.4
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 24 IFSTDFIEIYSKLAVNDQNN--LKSQIILLLQTCDNDNIRRKICDAAAE 70
+ ST E + AVN N +I L + + ++ + E
Sbjct: 11 VLSTKKHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCE 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,895,750
Number of extensions: 160857
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 55
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)