RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15255
(199 letters)
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 60.2 bits (144), Expect = 2e-11
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 16/156 (10%)
Query: 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL-----------Q 89
+N L Q ++N + + AA +N + + +F +
Sbjct: 34 NDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAK 93
Query: 90 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT- 148
N +K+ + L + I A +A + + WPE ++ + ++
Sbjct: 94 NQIKTNALTALVS-IEPRIANAAAQLIAAIADI---ELPHGAWPELMKIMVDNTGAEQPE 149
Query: 149 TLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184
+K ++L + E Q + +L +
Sbjct: 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
Score = 25.2 bits (53), Expect = 8.4
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTT--LKESALRLFTSV 161
+ + A+++ +L +D + L Q ++ N LK + L +F +
Sbjct: 651 VDSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDI 709
Query: 162 PEIFGNQESTYLVVIKQMLQQCL 184
G YL I +
Sbjct: 710 ASNIGADFIPYLNDIMALCVAAQ 732
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 59.3 bits (142), Expect = 3e-11
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 15/147 (10%)
Query: 49 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNI 108
+L +++ R + + +N + N + + +KS+ + + + I
Sbjct: 51 VLTKLKSEDEPTRS----LSGLILKNNVKAHFQNFPNG-VTDFIKSECLNNIGD-SSPLI 104
Query: 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE----- 163
R + +A WP+ L L +S++ E A + E
Sbjct: 105 RATVGILITTIASKG----ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 160
Query: 164 IFGNQESTYLVVIKQMLQQCLLPPNPY 190
+ + L ++ Q +P
Sbjct: 161 LDSDVLDRPLNIMIPKFLQFFKHSSPK 187
Score = 53.2 bits (126), Expect = 4e-09
Identities = 21/200 (10%), Positives = 55/200 (27%), Gaps = 27/200 (13%)
Query: 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRR 62
+ + R +S ++L+ + + +KS+ + + + IR
Sbjct: 52 LTKLKSEDEPTRSLSGLILKNNVKAH----FQNFPNGVTDFIKSECLNNIGD-SSPLIRA 106
Query: 63 KICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122
+ +A WP+ L L D+++ C+ A +
Sbjct: 107 TVGILITTIASKG----ELQNWPDLLPK--------LCSLLDSEDYN--TCEGAFGALQK 152
Query: 123 LIDDAGNNLWPEF--------LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174
+ +D+ L + + Q + ++ A+ ++
Sbjct: 153 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID 212
Query: 175 VIKQMLQQCLLPPNPYSVQA 194
+ L P +
Sbjct: 213 SFTENLFALAGDEEPEVRKN 232
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 54.7 bits (130), Expect = 1e-09
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL----------QN 90
NL + ++ L + N + AA +N + ++ ++ +
Sbjct: 30 VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89
Query: 91 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTT- 149
+K+ ++ L A +A + N WPE + L + N+T
Sbjct: 90 EVKNYVLHTLG--TETYRPSSASQCVAGIACA---EIPVNQWPELIPQLVANVTNPNSTE 144
Query: 150 -LKESALRLFTSV-PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196
+KES L + +I Q I + Q + P + L
Sbjct: 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193
Score = 54.7 bits (130), Expect = 1e-09
Identities = 17/193 (8%), Positives = 61/193 (31%), Gaps = 16/193 (8%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQ 53
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG 100
Query: 54 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKIC 113
A +A + N WPE + + + ++++
Sbjct: 101 --TETYRPSSASQCVAGIACA---EIPVNQWPELIPQLVA----NVTNPNSTEHMKESTL 151
Query: 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL 173
+A + +++ + + E L + Q + + + + + +
Sbjct: 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211
Query: 174 VVIKQMLQQCLLP 186
+ + Q +
Sbjct: 212 ESERHFIMQVVCE 224
Score = 30.1 bits (66), Expect = 0.18
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 21 LRKIFSTDFIEIYSKLAVNDQNNLKSQII-LLLQTCDNDNIRRKICDAAAEVARNLIDDA 79
L+ + + K+ D + ++ LL+ + + + A L++
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 80 GNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFL 139
G K + + L+ + ++ R L + E +Q L
Sbjct: 640 GGEFLK--YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLL 696
Query: 140 FQCANSDNTT--LKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182
+ ++N +K L +F + G + YL V+ LQQ
Sbjct: 697 LENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 45.7 bits (107), Expect = 2e-06
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 48 IILLLQTCDNDNIRRKICDAAAEVARNLI-----DDAGNNLWPEFLQNNLKSQIILLLQT 102
+ LL + N+ A A +N I D+ GN+L P +K +I+ L+ +
Sbjct: 37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS 96
Query: 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162
N N++ +I +A + +A + + WP L L ++D+ + L + S+
Sbjct: 97 LPN-NLQVQIGEAISSIADS----DFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151
Query: 163 EIF 165
+ +
Sbjct: 152 KRW 154
Score = 38.0 bits (87), Expect = 6e-04
Identities = 26/193 (13%), Positives = 61/193 (31%), Gaps = 13/193 (6%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDF--IEIYSKLAVNDQNNLKSQIILLLQTCDND 58
+++I + R A+ + + L N+ +K +I+ L+ + N
Sbjct: 41 LHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPN- 99
Query: 59 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQ-------NNLKSQIILLLQTCDNDNIRRK 111
N++ +I +A + +A + D L + K + + R
Sbjct: 100 NLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF--KRWRPL 157
Query: 112 ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST 171
+ L+ D + L+ + + + N K S LF + +
Sbjct: 158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITA-NENNKASLNILFDVLLVLIKLYYDF 216
Query: 172 YLVVIKQMLQQCL 184
I + + +
Sbjct: 217 NCQDIPEFFEDNI 229
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 40.9 bits (94), Expect = 4e-05
Identities = 21/197 (10%), Positives = 59/197 (29%), Gaps = 18/197 (9%)
Query: 2 NIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQT 54
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG- 99
Query: 55 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114
A +A I L N+ + ++++ +
Sbjct: 100 -TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-------NSTEHMKESTLE 151
Query: 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQESTY 172
A + +++ + + E L + Q + + +K +A + E
Sbjct: 152 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 211
Query: 173 LVVIKQMLQQCLLPPNP 189
M C P
Sbjct: 212 SERHFIMQVVCEATQCP 228
Score = 37.1 bits (84), Expect = 8e-04
Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 17/184 (9%)
Query: 20 LLRKIFSTDFIEIYS---KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 76
+L K S D +E+ + L NL + ++ L + N + AA +N +
Sbjct: 5 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSL 64
Query: 77 -------DDAGNNLWPEFLQNNLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAG 128
W N + +LQT A +A +
Sbjct: 65 TSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACA---EIP 121
Query: 129 NNLWPEFLQFLFQCANSDNTT--LKESALRLFTSVPE-IFGNQESTYLVVIKQMLQQCLL 185
N WPE + L + N+T +KES L + + I Q I + Q +
Sbjct: 122 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 181
Query: 186 PPNP 189
P
Sbjct: 182 KEEP 185
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 35.9 bits (81), Expect = 0.002
Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 2/161 (1%)
Query: 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIIL 98
++Q + + +++ +++N+ ++ A + AR L+ ++ L + +
Sbjct: 6 SNQGTVNWSVEDIVKGINSNNLESQL--QATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63
Query: 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158
L D I+ + A +A + + + S + + E A+
Sbjct: 64 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 123
Query: 159 TSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199
++ + LL S A
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 164
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.8 bits (57), Expect = 1.2
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 60 IRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDA 115
++RK + EVA L+ EF +N D NIRR++ DA
Sbjct: 15 VQRKGTTSYNEVADELVS--------EFTNSNNHLAAD---SAYDQKNIRRRVYDA 59
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein
Hpr {Bacillus subtilis [TaxId: 1423]}
Length = 162
Score = 24.4 bits (52), Expect = 9.2
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 LLRKIFSTDFIEIYSK 35
++R I+ DF+EI+
Sbjct: 146 MIRHIYGDDFMEIFET 161
>d1vdwa_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 253
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 67 AAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126
++A ++I D +N+ P F N S+ I + K+ D AE N+I
Sbjct: 4 TWRKIAIDIIRDFDHNIMPLF-GNPKASETI----SISPSGDETKVVDKVAE---NIIIS 55
Query: 127 AGNNLWPEFL--QFLFQCANSDNT 148
+L + + SD T
Sbjct: 56 KFKDLGVNVVSEEIGRIDQGSDYT 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 694,236
Number of extensions: 29619
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 20
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)