BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15257
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
H + +KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 3 HMQTIKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 45
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
H + +KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 3 HMQTIKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 45
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
H + +KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 2 HMQTIKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 44
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
PH + +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 PHMQAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 43
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK L + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------LPSEYVPTVF--DNYAV 42
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 52
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 44
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 49
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 46
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
++ +EL+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 192
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 43
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 46
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VPTV+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV 42
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 6 EQPHQELVKCVVVGDTAVGKTRLICARACN 35
++ +EL+KCVVVGD AVGKT L+ + N
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 6 EQPHQELVKCVVVGDTAVGKTRLICARACN 35
++ +EL+KCVVVGD AVGKT L+ + N
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGK L+ + NK + +VPTV+ D Y +
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNK------FPSEYVPTVF--DNYAV 49
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
+KCVVVGD AVGKT L+ + NK + +VP V+ D Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPAVF--DNYAV 42
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59
P ++KCVVVGD AVGKT L+ + A + +VPTV+ D Y +
Sbjct: 14 PGALMLKCVVVGDGAVGKTCLLMSYANDA------FPEEYVPTVF--DHYAV 57
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
+KCV VGD AVGKT L+ + N T +VPTV+
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSN------TFPTDYVPTVF 42
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N L ++PTV+ D Y
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTN------ALPGEYIPTVF--DNY 67
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
+KCV VGD AVGKT ++ + N T +VPTV+
Sbjct: 4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFPTDYVPTVF 40
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
+ +KCV VGD AVGKT ++ NK T ++PTV+
Sbjct: 8 KFIKCVTVGDGAVGKTCMLICYTSNK------FPTDYIPTVF 43
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
++ +K VVVGD AVGKT L+ A S ++ T +VPTV+
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLA------FSKGEIPTAYVPTVF 57
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
+ ++ +K VVVGD AVGKT L+ A S ++ T +VPTV+
Sbjct: 17 ENGKKALKIVVVGDGAVGKTCLLLA------FSKGEIPTAYVPTVF 56
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
Q + +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 17 QGTMQAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 59
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
VKCV+VGD AVGKT L+ + N T ++PT +
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNG------YPTEYIPTAF 54
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
+KCV VGD AVGKT ++ + N T +VPTV+
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTGN------TFPTDYVPTVF 40
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 47
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 7 SQAIKCVVVGDVAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 46
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 67
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTN------AFSGEYIPTVF--DNY 50
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 6 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 44
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 42
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 41
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 41
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGKT L+ + N ++PTV+ D Y
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTN------AFPGEYIPTVF--DNY 40
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACN 35
+ +KCVVVGD AVGKT L+ + N
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTN 53
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACN 35
+ +KCVVVGD AVGKT L+ + N
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTN 28
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ +KCVVVGD AVGK L+ + N ++PTV+ D Y
Sbjct: 9 QAIKCVVVGDGAVGKNCLLISYTTN------AFPGEYIPTVF--DNY 47
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 7 KLVIVGDVACGKTCLLIV------FSKDQFPAVYVPTVF 39
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 8 KLVIVGDVACGKTCLLIV------FSKDQFPEVYVPTVF 40
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 8 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 40
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 9 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 41
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 11 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 43
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 9 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 41
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 7 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 39
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 5 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 37
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 7 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 39
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 9 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 41
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 5 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 37
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 10 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 42
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 12 KLVIVGDGACGKTCLLIVN------SKGQFPEVYVPTVF 44
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 7 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 39
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 7 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 39
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 7 KLVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVF 39
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 4 DNEQPHQELVKCVVVGDTAVGKT 26
D ++ + L K V+VGD +VGKT
Sbjct: 21 DPDEQYDFLFKLVLVGDASVGKT 43
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 27 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 59
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 10 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 42
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
K V+VGD A GKT L+ S Q +VPTV+
Sbjct: 27 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,775,225
Number of Sequences: 62578
Number of extensions: 46276
Number of successful extensions: 250
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 80
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)