Query psy15257
Match_columns 65
No_of_seqs 176 out of 1116
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:22:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.6 2.3E-15 4.9E-20 91.0 5.9 50 6-62 3-52 (205)
2 KOG0094|consensus 99.5 4.5E-14 9.8E-19 85.7 5.5 50 9-65 19-68 (221)
3 KOG0078|consensus 99.5 1.9E-13 4.1E-18 83.2 6.7 52 5-63 5-56 (207)
4 KOG0394|consensus 99.4 4.8E-13 1E-17 80.6 3.7 49 8-63 5-53 (210)
5 KOG0080|consensus 99.4 2.7E-12 5.8E-17 76.5 6.4 49 7-62 6-54 (209)
6 KOG0098|consensus 99.3 2.5E-12 5.4E-17 77.8 5.5 50 9-65 3-61 (216)
7 KOG0087|consensus 99.3 5.7E-12 1.2E-16 77.1 5.8 51 4-61 6-56 (222)
8 KOG0092|consensus 99.3 6.5E-12 1.4E-16 75.9 4.9 46 10-62 3-48 (200)
9 KOG0393|consensus 99.3 1.9E-12 4.2E-17 78.5 2.5 45 11-63 3-47 (198)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 1E-11 2.2E-16 73.9 5.6 44 10-61 3-46 (182)
11 cd01875 RhoG RhoG subfamily. 99.3 9.6E-12 2.1E-16 74.0 5.2 40 12-59 3-42 (191)
12 cd01874 Cdc42 Cdc42 subfamily. 99.3 1.1E-11 2.4E-16 72.9 5.0 39 13-59 2-40 (175)
13 cd01873 RhoBTB RhoBTB subfamil 99.2 1.9E-11 4.2E-16 73.4 5.7 47 12-58 2-48 (195)
14 KOG0079|consensus 99.2 3.9E-12 8.6E-17 75.0 1.9 49 8-63 4-52 (198)
15 cd04131 Rnd Rnd subfamily. Th 99.2 2.3E-11 5.1E-16 71.9 5.3 40 13-60 2-41 (178)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 3.1E-11 6.8E-16 74.5 6.0 45 8-60 9-53 (232)
17 cd04133 Rop_like Rop subfamily 99.2 3.8E-11 8.3E-16 71.1 5.0 40 13-60 2-41 (176)
18 cd04128 Spg1 Spg1p. Spg1p (se 99.2 4E-11 8.6E-16 71.1 4.8 40 13-59 1-40 (182)
19 KOG0095|consensus 99.2 5.5E-11 1.2E-15 70.4 5.3 49 8-63 3-51 (213)
20 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 3.3E-11 7.2E-16 73.9 4.5 39 13-59 2-40 (222)
21 PLN03110 Rab GTPase; Provision 99.2 1.7E-10 3.7E-15 70.0 6.8 52 1-59 1-52 (216)
22 PLN03071 GTP-binding nuclear p 99.1 1.3E-10 2.8E-15 70.7 5.8 43 10-59 11-53 (219)
23 cd01892 Miro2 Miro2 subfamily. 99.1 9.9E-11 2.1E-15 68.4 5.0 37 10-52 2-39 (169)
24 cd04121 Rab40 Rab40 subfamily. 99.1 2.2E-10 4.7E-15 68.6 5.9 44 9-59 3-46 (189)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 1.8E-10 3.9E-15 67.5 4.7 41 12-60 2-42 (172)
26 KOG0086|consensus 99.1 9.7E-11 2.1E-15 69.5 3.4 48 5-59 2-49 (214)
27 cd04120 Rab12 Rab12 subfamily. 99.1 2.2E-10 4.8E-15 69.3 5.0 41 14-61 2-42 (202)
28 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 3.4E-10 7.4E-15 66.2 5.6 39 14-59 2-40 (170)
29 cd01871 Rac1_like Rac1-like su 99.1 2.5E-10 5.5E-15 67.0 4.9 39 13-59 2-40 (174)
30 cd04138 H_N_K_Ras_like H-Ras/N 99.1 2.3E-10 5E-15 65.0 4.5 39 13-59 2-40 (162)
31 cd04109 Rab28 Rab28 subfamily. 99.1 3.3E-10 7.2E-15 68.4 5.3 42 13-61 1-42 (215)
32 cd04127 Rab27A Rab27a subfamil 99.1 4.5E-10 9.9E-15 65.4 5.6 41 11-58 3-43 (180)
33 cd04107 Rab32_Rab38 Rab38/Rab3 99.1 4.2E-10 9E-15 67.2 5.4 39 13-58 1-39 (201)
34 KOG0093|consensus 99.1 2.9E-10 6.3E-15 67.1 4.5 47 6-59 15-61 (193)
35 KOG0091|consensus 99.1 2.1E-10 4.5E-15 68.6 3.8 43 9-58 5-47 (213)
36 PF00071 Ras: Ras family; Int 99.1 1.8E-10 3.8E-15 66.0 3.4 42 14-62 1-42 (162)
37 cd04136 Rap_like Rap-like subf 99.1 2.6E-10 5.7E-15 65.1 4.1 40 13-60 2-41 (163)
38 cd04102 RabL3 RabL3 (Rab-like3 99.0 4.6E-10 1E-14 68.0 5.2 34 13-52 1-34 (202)
39 cd04117 Rab15 Rab15 subfamily. 99.0 6E-10 1.3E-14 64.4 5.2 38 13-57 1-38 (161)
40 PLN00023 GTP-binding protein; 99.0 6.9E-10 1.5E-14 71.8 5.9 45 8-59 17-61 (334)
41 cd04111 Rab39 Rab39 subfamily. 99.0 6.9E-10 1.5E-14 67.1 5.6 43 12-61 2-44 (211)
42 cd00877 Ran Ran (Ras-related n 99.0 6.1E-10 1.3E-14 64.8 5.0 39 13-58 1-39 (166)
43 cd04110 Rab35 Rab35 subfamily. 99.0 8.3E-10 1.8E-14 66.0 5.5 41 10-57 4-44 (199)
44 PTZ00369 Ras-like protein; Pro 99.0 5.7E-10 1.2E-14 66.1 4.6 40 12-59 5-44 (189)
45 cd04119 RJL RJL (RabJ-Like) su 99.0 7.9E-10 1.7E-14 63.1 4.9 38 13-57 1-38 (168)
46 cd04122 Rab14 Rab14 subfamily. 99.0 8.9E-10 1.9E-14 63.6 5.1 35 12-52 2-36 (166)
47 cd04134 Rho3 Rho3 subfamily. 99.0 7.6E-10 1.6E-14 65.6 4.8 38 13-58 1-38 (189)
48 cd04176 Rap2 Rap2 subgroup. T 99.0 5.7E-10 1.2E-14 64.0 4.2 40 13-60 2-41 (163)
49 KOG0395|consensus 99.0 2.6E-10 5.5E-15 69.0 2.8 45 11-63 2-46 (196)
50 PTZ00132 GTP-binding nuclear p 99.0 1.1E-09 2.5E-14 65.9 5.5 44 8-58 5-48 (215)
51 cd01867 Rab8_Rab10_Rab13_like 99.0 1E-09 2.3E-14 63.4 4.8 36 11-52 2-37 (167)
52 cd04175 Rap1 Rap1 subgroup. T 99.0 8.2E-10 1.8E-14 63.5 4.2 38 13-58 2-39 (164)
53 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.3E-09 2.7E-14 63.5 4.8 39 13-59 1-39 (173)
54 cd01865 Rab3 Rab3 subfamily. 99.0 1.9E-09 4.2E-14 62.2 5.5 37 13-56 2-38 (165)
55 cd01870 RhoA_like RhoA-like su 99.0 1.2E-09 2.5E-14 63.3 4.4 34 13-52 2-35 (175)
56 KOG0081|consensus 99.0 3.2E-11 6.9E-16 71.9 -2.2 48 7-61 4-51 (219)
57 cd04143 Rhes_like Rhes_like su 99.0 7.8E-10 1.7E-14 68.7 3.7 40 13-60 1-40 (247)
58 cd04103 Centaurin_gamma Centau 98.9 1.3E-09 2.9E-14 63.3 4.4 32 13-50 1-32 (158)
59 cd04135 Tc10 TC10 subfamily. 98.9 1.8E-09 4E-14 62.4 4.9 39 13-59 1-39 (174)
60 cd04101 RabL4 RabL4 (Rab-like4 98.9 2.5E-09 5.3E-14 61.3 5.4 40 13-59 1-42 (164)
61 cd04116 Rab9 Rab9 subfamily. 98.9 4.1E-09 8.9E-14 60.8 6.2 41 10-57 3-43 (170)
62 cd01864 Rab19 Rab19 subfamily. 98.9 2.7E-09 5.8E-14 61.4 5.4 36 11-52 2-37 (165)
63 cd04140 ARHI_like ARHI subfami 98.9 1.9E-09 4E-14 62.3 4.5 38 13-58 2-39 (165)
64 cd04115 Rab33B_Rab33A Rab33B/R 98.9 3.3E-09 7E-14 61.6 5.5 40 12-58 2-41 (170)
65 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 3E-09 6.5E-14 61.2 5.2 39 12-57 2-40 (166)
66 cd04106 Rab23_lke Rab23-like s 98.9 3.7E-09 7.9E-14 60.4 5.5 38 13-57 1-38 (162)
67 smart00173 RAS Ras subfamily o 98.9 1.6E-09 3.5E-14 62.0 3.9 38 13-58 1-38 (164)
68 cd04132 Rho4_like Rho4-like su 98.9 3.2E-09 7E-14 62.3 5.1 38 13-58 1-38 (187)
69 cd04125 RabA_like RabA-like su 98.9 3.9E-09 8.5E-14 62.2 5.4 34 13-52 1-34 (188)
70 cd04142 RRP22 RRP22 subfamily. 98.9 2E-09 4.3E-14 64.7 4.0 38 13-57 1-38 (198)
71 COG1100 GTPase SAR1 and relate 98.9 4.3E-09 9.4E-14 63.0 5.2 34 13-52 6-39 (219)
72 PLN03108 Rab family protein; P 98.9 4.3E-09 9.3E-14 63.5 5.1 40 10-56 4-43 (210)
73 cd04145 M_R_Ras_like M-Ras/R-R 98.9 4.3E-09 9.4E-14 60.1 4.6 40 12-59 2-41 (164)
74 cd04124 RabL2 RabL2 subfamily. 98.9 6.6E-09 1.4E-13 59.9 5.3 34 13-52 1-34 (161)
75 KOG0088|consensus 98.9 1.3E-09 2.7E-14 65.1 2.3 55 5-65 6-68 (218)
76 cd01866 Rab2 Rab2 subfamily. 98.9 6.9E-09 1.5E-13 60.1 5.4 37 10-52 2-38 (168)
77 cd01868 Rab11_like Rab11-like. 98.9 7.1E-09 1.5E-13 59.5 5.3 36 11-52 2-37 (165)
78 cd04144 Ras2 Ras2 subfamily. 98.9 2.4E-09 5.2E-14 63.4 3.3 37 14-58 1-37 (190)
79 KOG0097|consensus 98.8 4.9E-09 1.1E-13 61.8 4.3 47 6-59 5-51 (215)
80 cd04177 RSR1 RSR1 subgroup. R 98.8 6.1E-09 1.3E-13 60.3 4.5 39 13-59 2-40 (168)
81 cd04113 Rab4 Rab4 subfamily. 98.8 9.6E-09 2.1E-13 58.8 5.2 34 13-52 1-34 (161)
82 cd04118 Rab24 Rab24 subfamily. 98.8 9.1E-09 2E-13 60.7 5.2 34 13-52 1-35 (193)
83 cd04126 Rab20 Rab20 subfamily. 98.8 7.7E-09 1.7E-13 63.4 4.8 45 13-65 1-50 (220)
84 cd04148 RGK RGK subfamily. Th 98.8 6.4E-09 1.4E-13 63.4 4.2 34 13-52 1-35 (221)
85 smart00174 RHO Rho (Ras homolo 98.8 8.2E-09 1.8E-13 59.7 4.4 38 15-60 1-38 (174)
86 cd04150 Arf1_5_like Arf1-Arf5- 98.8 7.3E-09 1.6E-13 59.8 3.8 33 13-52 1-33 (159)
87 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 6.2E-09 1.4E-13 60.5 3.0 32 15-52 2-33 (164)
88 cd01862 Rab7 Rab7 subfamily. 98.8 1.9E-08 4.1E-13 57.8 5.0 34 13-52 1-34 (172)
89 cd01860 Rab5_related Rab5-rela 98.8 2E-08 4.4E-13 57.3 5.1 35 12-52 1-35 (163)
90 PTZ00133 ADP-ribosylation fact 98.8 9.2E-09 2E-13 60.8 3.7 35 11-52 16-50 (182)
91 cd04146 RERG_RasL11_like RERG/ 98.8 5.4E-09 1.2E-13 60.2 2.6 33 14-52 1-33 (165)
92 cd04112 Rab26 Rab26 subfamily. 98.8 1.4E-08 3E-13 60.2 4.4 34 13-52 1-35 (191)
93 smart00177 ARF ARF-like small 98.8 1.4E-08 3.1E-13 59.5 4.3 35 11-52 12-46 (175)
94 cd04139 RalA_RalB RalA/RalB su 98.8 1.4E-08 2.9E-13 57.8 4.0 34 13-52 1-34 (164)
95 KOG4252|consensus 98.7 2.3E-09 5.1E-14 65.0 0.6 50 8-64 16-65 (246)
96 cd04129 Rho2 Rho2 subfamily. 98.7 2.1E-08 4.6E-13 59.2 4.6 38 13-58 2-39 (187)
97 cd00157 Rho Rho (Ras homology) 98.7 2.7E-08 6E-13 57.1 5.0 40 13-60 1-40 (171)
98 cd04114 Rab30 Rab30 subfamily. 98.7 5.2E-08 1.1E-12 56.0 6.1 41 10-57 5-45 (169)
99 cd01861 Rab6 Rab6 subfamily. 98.7 3.1E-08 6.8E-13 56.4 5.1 34 13-52 1-34 (161)
100 PLN03118 Rab family protein; P 98.7 3.9E-08 8.6E-13 59.1 5.7 40 6-52 8-47 (211)
101 smart00175 RAB Rab subfamily o 98.7 4E-08 8.7E-13 56.0 5.3 34 13-52 1-34 (164)
102 TIGR02528 EutP ethanolamine ut 98.7 1.9E-08 4.2E-13 56.6 3.8 36 14-58 2-37 (142)
103 smart00010 small_GTPase Small 98.7 9.4E-09 2E-13 56.3 2.4 34 13-52 1-35 (124)
104 cd04147 Ras_dva Ras-dva subfam 98.7 1.4E-08 2.9E-13 60.6 3.3 33 14-52 1-33 (198)
105 cd04149 Arf6 Arf6 subfamily. 98.7 2.5E-08 5.4E-13 58.2 4.0 35 11-52 8-42 (168)
106 PLN00223 ADP-ribosylation fact 98.7 2.8E-08 6E-13 58.8 3.9 35 11-52 16-50 (181)
107 cd04137 RheB Rheb (Ras Homolog 98.6 4.3E-08 9.3E-13 57.1 4.1 34 13-52 2-35 (180)
108 cd00154 Rab Rab family. Rab G 98.6 1E-07 2.2E-12 53.4 5.1 34 13-52 1-34 (159)
109 cd04158 ARD1 ARD1 subfamily. 98.6 5.2E-08 1.1E-12 56.6 4.1 32 14-52 1-32 (169)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.6 5.9E-08 1.3E-12 57.2 4.2 34 12-52 3-36 (183)
111 cd01863 Rab18 Rab18 subfamily. 98.6 8.1E-08 1.8E-12 54.8 4.6 34 13-52 1-34 (161)
112 cd04159 Arl10_like Arl10-like 98.6 5.4E-08 1.2E-12 54.6 3.7 32 15-52 2-33 (159)
113 cd01893 Miro1 Miro1 subfamily. 98.6 6.2E-08 1.4E-12 56.0 4.0 28 14-47 2-29 (166)
114 cd04157 Arl6 Arl6 subfamily. 98.6 7.4E-08 1.6E-12 54.8 3.7 33 14-52 1-34 (162)
115 smart00176 RAN Ran (Ras-relate 98.6 9.2E-08 2E-12 57.8 4.1 35 18-59 1-35 (200)
116 cd00876 Ras Ras family. The R 98.6 8.8E-08 1.9E-12 54.2 3.6 33 14-52 1-33 (160)
117 cd04123 Rab21 Rab21 subfamily. 98.5 1.9E-07 4.2E-12 52.8 4.8 34 13-52 1-34 (162)
118 PF08477 Miro: Miro-like prote 98.5 2.6E-07 5.6E-12 50.6 4.6 18 14-31 1-18 (119)
119 cd04154 Arl2 Arl2 subfamily. 98.5 2.1E-07 4.6E-12 54.1 4.2 37 9-52 11-47 (173)
120 cd04155 Arl3 Arl3 subfamily. 98.5 1.1E-07 2.3E-12 55.0 2.8 22 10-31 12-33 (173)
121 cd04161 Arl2l1_Arl13_like Arl2 98.5 1.6E-07 3.5E-12 54.6 3.3 32 14-52 1-32 (167)
122 TIGR00231 small_GTP small GTP- 98.5 4.7E-07 1E-11 50.2 5.1 34 13-52 2-35 (161)
123 cd04151 Arl1 Arl1 subfamily. 98.5 2.2E-07 4.8E-12 53.2 3.5 32 14-52 1-32 (158)
124 smart00178 SAR Sar1p-like memb 98.4 4.8E-07 1E-11 53.5 4.6 22 10-31 15-36 (184)
125 PRK04213 GTP-binding protein; 98.4 1.1E-06 2.5E-11 52.1 5.5 34 10-49 7-40 (201)
126 cd04160 Arfrp1 Arfrp1 subfamil 98.4 5.7E-07 1.2E-11 51.6 3.9 38 14-52 1-39 (167)
127 cd04156 ARLTS1 ARLTS1 subfamil 98.4 4.9E-07 1.1E-11 51.5 3.7 32 14-52 1-32 (160)
128 PRK00454 engB GTP-binding prot 98.4 7.3E-07 1.6E-11 52.4 4.2 24 8-31 20-43 (196)
129 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.3 6.4E-07 1.4E-11 52.3 3.7 34 12-52 15-48 (174)
130 cd00879 Sar1 Sar1 subfamily. 98.3 4.2E-07 9.1E-12 53.4 2.7 36 10-52 17-52 (190)
131 KOG0096|consensus 98.3 8.3E-07 1.8E-11 54.1 3.7 42 10-58 8-49 (216)
132 cd00878 Arf_Arl Arf (ADP-ribos 98.3 9.3E-07 2E-11 50.3 3.5 32 14-52 1-32 (158)
133 cd01878 HflX HflX subfamily. 98.2 2.8E-06 6.2E-11 50.5 4.6 21 11-31 40-60 (204)
134 TIGR03598 GTPase_YsxC ribosome 98.2 2.6E-06 5.7E-11 50.0 4.2 23 9-31 15-37 (179)
135 cd04105 SR_beta Signal recogni 98.2 3.8E-06 8.2E-11 50.7 4.7 31 14-50 2-32 (203)
136 KOG0083|consensus 98.1 3.6E-07 7.8E-12 53.5 -0.4 33 17-56 2-35 (192)
137 PF00025 Arf: ADP-ribosylation 98.1 3.2E-06 6.9E-11 49.8 3.5 36 10-52 12-47 (175)
138 cd01897 NOG NOG1 is a nucleola 98.1 9.2E-06 2E-10 46.5 5.1 18 14-31 2-19 (168)
139 KOG1673|consensus 98.1 1.9E-06 4E-11 51.5 1.8 49 8-63 16-64 (205)
140 cd01850 CDC_Septin CDC/Septin. 98.1 1.2E-05 2.7E-10 50.7 5.6 21 11-31 3-23 (276)
141 cd01876 YihA_EngB The YihA (En 98.0 6.5E-06 1.4E-10 46.4 3.3 18 14-31 1-18 (170)
142 cd01898 Obg Obg subfamily. Th 98.0 9.5E-06 2.1E-10 46.5 4.0 18 14-31 2-19 (170)
143 KOG4423|consensus 98.0 3.8E-07 8.1E-12 55.7 -2.7 41 9-56 22-62 (229)
144 COG1419 FlhF Flagellar GTP-bin 97.9 7E-07 1.5E-11 59.2 -2.0 20 12-31 203-222 (407)
145 cd04104 p47_IIGP_like p47 (47- 97.9 1.3E-05 2.8E-10 48.0 2.9 19 13-31 2-20 (197)
146 cd01896 DRG The developmentall 97.9 4.9E-05 1.1E-09 46.9 5.2 18 14-31 2-19 (233)
147 KOG1707|consensus 97.8 2.1E-05 4.6E-10 54.3 3.5 31 10-46 7-37 (625)
148 cd04171 SelB SelB subfamily. 97.8 4.3E-05 9.2E-10 43.3 4.2 18 14-31 2-19 (164)
149 cd01891 TypA_BipA TypA (tyrosi 97.8 3.7E-05 8.1E-10 45.6 4.0 19 13-31 3-21 (194)
150 cd04164 trmE TrmE (MnmE, ThdF, 97.8 7.9E-05 1.7E-09 41.7 4.7 19 13-31 2-20 (157)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 97.7 7.2E-05 1.6E-09 42.6 4.2 18 14-31 2-19 (168)
152 TIGR00450 mnmE_trmE_thdF tRNA 97.7 9.6E-05 2.1E-09 49.5 5.3 21 11-31 202-222 (442)
153 TIGR03156 GTP_HflX GTP-binding 97.7 9.6E-05 2.1E-09 48.2 4.8 21 11-31 188-208 (351)
154 PRK15494 era GTPase Era; Provi 97.7 9.9E-05 2.1E-09 47.8 4.9 21 11-31 51-71 (339)
155 PF00448 SRP54: SRP54-type pro 97.7 2.2E-05 4.8E-10 47.5 1.6 19 13-31 2-20 (196)
156 TIGR00991 3a0901s02IAP34 GTP-b 97.7 0.00016 3.4E-09 46.9 5.5 22 10-31 36-57 (313)
157 cd01881 Obg_like The Obg-like 97.7 4.4E-05 9.6E-10 43.7 2.7 15 17-31 1-15 (176)
158 cd01853 Toc34_like Toc34-like 97.6 0.00014 3.1E-09 45.5 5.0 22 10-31 29-50 (249)
159 PRK11058 GTPase HflX; Provisio 97.6 0.00012 2.6E-09 48.9 4.6 19 13-31 198-216 (426)
160 PF10662 PduV-EutP: Ethanolami 97.6 0.00013 2.8E-09 42.6 4.0 19 13-31 2-20 (143)
161 cd04163 Era Era subfamily. Er 97.6 7.8E-05 1.7E-09 41.8 3.0 20 12-31 3-22 (168)
162 cd01879 FeoB Ferrous iron tran 97.6 5.6E-05 1.2E-09 42.6 2.2 15 17-31 1-15 (158)
163 KOG3883|consensus 97.5 0.00018 3.9E-09 43.0 4.0 46 11-62 8-53 (198)
164 cd01895 EngA2 EngA2 subfamily. 97.5 9.9E-05 2.1E-09 41.8 2.5 20 12-31 2-21 (174)
165 TIGR02729 Obg_CgtA Obg family 97.5 0.00032 7E-09 45.4 5.0 52 13-65 158-211 (329)
166 PF03193 DUF258: Protein of un 97.5 0.00011 2.4E-09 43.5 2.6 18 14-31 37-54 (161)
167 COG3839 MalK ABC-type sugar tr 97.4 0.0001 2.2E-09 48.2 2.3 17 15-31 32-48 (338)
168 cd01889 SelB_euk SelB subfamil 97.4 0.00024 5.2E-09 42.0 3.7 19 13-31 1-19 (192)
169 PF02421 FeoB_N: Ferrous iron 97.4 0.00027 5.9E-09 41.6 3.8 31 13-44 1-31 (156)
170 PF01926 MMR_HSR1: 50S ribosom 97.4 0.00013 2.9E-09 39.9 2.3 18 14-31 1-18 (116)
171 cd01899 Ygr210 Ygr210 subfamil 97.4 0.00027 5.9E-09 45.7 4.0 37 15-52 1-38 (318)
172 COG1116 TauB ABC-type nitrate/ 97.4 0.00013 2.7E-09 46.0 2.3 18 14-31 31-48 (248)
173 PRK08118 topology modulation p 97.4 0.00017 3.7E-09 42.5 2.7 19 13-31 2-20 (167)
174 cd01894 EngA1 EngA1 subfamily. 97.4 0.00026 5.6E-09 39.7 3.2 16 16-31 1-16 (157)
175 PRK09602 translation-associate 97.3 0.00057 1.2E-08 45.4 5.1 39 13-52 2-41 (396)
176 cd00882 Ras_like_GTPase Ras-li 97.3 0.00017 3.7E-09 39.2 2.2 15 17-31 1-15 (157)
177 PF13207 AAA_17: AAA domain; P 97.3 0.00018 3.8E-09 39.5 2.3 18 14-31 1-18 (121)
178 cd04165 GTPBP1_like GTPBP1-lik 97.3 0.00016 3.5E-09 44.4 2.3 18 14-31 1-18 (224)
179 PRK00093 GTP-binding protein D 97.3 0.00046 9.9E-09 45.5 4.4 19 13-31 2-20 (435)
180 PRK07261 topology modulation p 97.3 0.00023 4.9E-09 42.0 2.7 18 14-31 2-19 (171)
181 PRK03003 GTP-binding protein D 97.3 0.00041 8.8E-09 46.6 4.1 21 11-31 210-230 (472)
182 TIGR00436 era GTP-binding prot 97.3 0.00061 1.3E-08 42.6 4.4 18 14-31 2-19 (270)
183 cd00881 GTP_translation_factor 97.3 0.00022 4.9E-09 41.1 2.3 18 14-31 1-18 (189)
184 PF09439 SRPRB: Signal recogni 97.3 0.00022 4.8E-09 43.0 2.2 19 13-31 4-22 (181)
185 PRK05291 trmE tRNA modificatio 97.2 0.00058 1.3E-08 45.8 4.4 21 11-31 214-234 (449)
186 COG0563 Adk Adenylate kinase a 97.2 0.00023 4.9E-09 42.6 2.2 18 14-31 2-19 (178)
187 PF00735 Septin: Septin; Inte 97.2 0.00026 5.6E-09 45.0 2.5 21 11-31 3-23 (281)
188 cd01856 YlqF YlqF. Proteins o 97.2 0.0008 1.7E-08 39.4 4.3 21 11-31 114-134 (171)
189 PRK10078 ribose 1,5-bisphospho 97.2 0.00035 7.5E-09 41.5 2.7 18 14-31 4-21 (186)
190 cd01890 LepA LepA subfamily. 97.2 0.00022 4.8E-09 41.2 1.8 18 14-31 2-19 (179)
191 COG3842 PotA ABC-type spermidi 97.2 0.00027 5.9E-09 46.4 2.3 17 15-31 34-50 (352)
192 PF04548 AIG1: AIG1 family; I 97.2 0.00074 1.6E-08 41.0 4.1 19 13-31 1-19 (212)
193 smart00382 AAA ATPases associa 97.2 0.00041 8.9E-09 37.4 2.7 19 13-31 3-21 (148)
194 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00042 9.2E-09 39.4 2.7 18 14-31 85-102 (141)
195 PRK15467 ethanolamine utilizat 97.2 0.00043 9.4E-09 40.1 2.7 18 14-31 3-20 (158)
196 PRK12296 obgE GTPase CgtA; Rev 97.2 0.001 2.2E-08 45.5 4.8 52 13-65 160-212 (500)
197 TIGR03594 GTPase_EngA ribosome 97.1 0.00078 1.7E-08 44.3 4.0 18 14-31 1-18 (429)
198 KOG0070|consensus 97.1 0.00034 7.4E-09 42.2 2.1 36 10-52 15-50 (181)
199 COG1126 GlnQ ABC-type polar am 97.1 0.00042 9.1E-09 43.3 2.6 17 14-30 30-46 (240)
200 PRK14738 gmk guanylate kinase; 97.1 0.00079 1.7E-08 40.7 3.7 21 11-31 12-32 (206)
201 COG4525 TauB ABC-type taurine 97.1 0.00055 1.2E-08 42.6 3.0 18 14-31 33-50 (259)
202 cd01852 AIG1 AIG1 (avrRpt2-ind 97.1 0.0013 2.9E-08 39.1 4.7 19 13-31 1-19 (196)
203 cd03238 ABC_UvrA The excision 97.1 0.00047 1E-08 41.1 2.6 19 13-31 22-40 (176)
204 PRK09518 bifunctional cytidyla 97.1 0.00076 1.6E-08 47.5 3.9 20 12-31 450-469 (712)
205 PF00004 AAA: ATPase family as 97.1 0.00052 1.1E-08 37.7 2.5 17 15-31 1-17 (132)
206 PF07728 AAA_5: AAA domain (dy 97.1 0.00033 7.1E-09 39.4 1.6 17 15-31 2-18 (139)
207 PF13671 AAA_33: AAA domain; P 97.1 0.00042 9.2E-09 38.8 2.0 17 15-31 2-18 (143)
208 cd00071 GMPK Guanosine monopho 97.1 0.00054 1.2E-08 39.1 2.5 17 15-31 2-18 (137)
209 PRK03003 GTP-binding protein D 97.1 0.0013 2.9E-08 44.2 4.7 20 12-31 38-57 (472)
210 cd01859 MJ1464 MJ1464. This f 97.1 0.0014 3E-08 37.6 4.2 21 11-31 100-120 (156)
211 COG1136 SalX ABC-type antimicr 97.1 0.00049 1.1E-08 42.8 2.4 18 14-31 33-50 (226)
212 PRK09554 feoB ferrous iron tra 97.0 0.0017 3.6E-08 46.4 5.3 20 12-31 3-22 (772)
213 PRK14737 gmk guanylate kinase; 97.0 0.00054 1.2E-08 41.1 2.5 19 13-31 5-23 (186)
214 PF13191 AAA_16: AAA ATPase do 97.0 0.00042 9.1E-09 40.2 2.0 19 13-31 25-43 (185)
215 TIGR02322 phosphon_PhnN phosph 97.0 0.00059 1.3E-08 40.0 2.5 18 14-31 3-20 (179)
216 COG0194 Gmk Guanylate kinase [ 97.0 0.00065 1.4E-08 41.3 2.7 19 13-31 5-23 (191)
217 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00059 1.3E-08 38.0 2.3 18 14-31 17-34 (107)
218 cd00009 AAA The AAA+ (ATPases 97.0 0.00069 1.5E-08 37.0 2.5 19 13-31 20-38 (151)
219 KOG0073|consensus 97.0 0.0018 3.8E-08 39.0 4.3 36 10-52 14-49 (185)
220 TIGR03263 guanyl_kin guanylate 97.0 0.00069 1.5E-08 39.6 2.5 18 14-31 3-20 (180)
221 TIGR03594 GTPase_EngA ribosome 97.0 0.0027 6E-08 41.7 5.5 21 11-31 171-191 (429)
222 PF13521 AAA_28: AAA domain; P 97.0 0.00069 1.5E-08 39.2 2.3 18 14-31 1-18 (163)
223 PRK12297 obgE GTPase CgtA; Rev 97.0 0.0023 5E-08 43.0 5.0 18 14-31 160-177 (424)
224 TIGR03499 FlhF flagellar biosy 97.0 0.00067 1.4E-08 43.0 2.4 20 12-31 194-213 (282)
225 PF13555 AAA_29: P-loop contai 96.9 0.0008 1.7E-08 34.1 2.3 18 14-31 25-42 (62)
226 PF00005 ABC_tran: ABC transpo 96.9 0.00065 1.4E-08 37.9 2.1 18 14-31 13-30 (137)
227 PF13401 AAA_22: AAA domain; P 96.9 0.00044 9.6E-09 38.2 1.4 18 14-31 6-23 (131)
228 PRK06217 hypothetical protein; 96.9 0.00087 1.9E-08 39.6 2.7 19 13-31 2-20 (183)
229 PRK11889 flhF flagellar biosyn 96.9 0.00085 1.8E-08 45.2 2.8 19 13-31 242-260 (436)
230 PF05729 NACHT: NACHT domain 96.9 0.00067 1.5E-08 38.4 2.1 17 15-31 3-19 (166)
231 PRK00089 era GTPase Era; Revie 96.9 0.0013 2.9E-08 41.3 3.5 21 11-31 4-24 (292)
232 PF04665 Pox_A32: Poxvirus A32 96.9 0.00083 1.8E-08 42.1 2.4 22 10-31 11-32 (241)
233 COG1162 Predicted GTPases [Gen 96.9 0.00081 1.8E-08 43.4 2.3 18 14-31 166-183 (301)
234 COG1117 PstB ABC-type phosphat 96.9 0.00074 1.6E-08 42.3 2.0 17 15-31 36-52 (253)
235 PRK00300 gmk guanylate kinase; 96.9 0.00093 2E-08 39.8 2.4 19 13-31 6-24 (205)
236 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0011 2.5E-08 38.1 2.6 20 12-31 102-121 (157)
237 PRK12288 GTPase RsgA; Reviewed 96.8 0.001 2.2E-08 43.5 2.5 17 15-31 208-224 (347)
238 PF13173 AAA_14: AAA domain 96.8 0.00095 2.1E-08 37.4 2.0 18 14-31 4-21 (128)
239 COG1120 FepC ABC-type cobalami 96.8 0.0011 2.3E-08 42.0 2.3 17 15-31 31-47 (258)
240 COG3638 ABC-type phosphate/pho 96.8 0.0016 3.4E-08 41.2 3.0 17 15-31 33-49 (258)
241 PF03266 NTPase_1: NTPase; In 96.8 0.0014 3E-08 38.9 2.6 18 14-31 1-18 (168)
242 PF01637 Arch_ATPase: Archaeal 96.8 0.00082 1.8E-08 39.9 1.7 19 13-31 21-39 (234)
243 PRK05541 adenylylsulfate kinas 96.8 0.0023 5E-08 37.4 3.6 20 12-31 7-26 (176)
244 PRK12726 flagellar biosynthesi 96.8 0.0011 2.4E-08 44.3 2.4 20 12-31 206-225 (407)
245 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0013 2.9E-08 39.6 2.6 18 14-31 32-49 (218)
246 PRK12299 obgE GTPase CgtA; Rev 96.8 0.0037 7.9E-08 40.7 4.7 52 13-65 159-212 (335)
247 PRK05480 uridine/cytidine kina 96.8 0.0019 4.1E-08 38.8 3.2 21 11-31 5-25 (209)
248 TIGR03596 GTPase_YlqF ribosome 96.7 0.0033 7.2E-08 39.6 4.4 21 11-31 117-137 (276)
249 PF04670 Gtr1_RagA: Gtr1/RagA 96.7 0.0024 5.2E-08 39.8 3.6 18 14-31 1-18 (232)
250 TIGR00487 IF-2 translation ini 96.7 0.0043 9.3E-08 43.1 5.1 21 11-31 86-106 (587)
251 PRK12723 flagellar biosynthesi 96.7 0.002 4.3E-08 42.8 3.3 19 13-31 175-193 (388)
252 PHA00729 NTP-binding motif con 96.7 0.0018 3.9E-08 40.3 2.9 19 13-31 18-36 (226)
253 TIGR01313 therm_gnt_kin carboh 96.7 0.0012 2.5E-08 38.2 2.0 17 15-31 1-17 (163)
254 PF00625 Guanylate_kin: Guanyl 96.7 0.0015 3.3E-08 38.6 2.5 18 14-31 4-21 (183)
255 smart00072 GuKc Guanylate kina 96.7 0.0015 3.3E-08 38.7 2.5 18 14-31 4-21 (184)
256 TIGR00960 3a0501s02 Type II (G 96.7 0.0016 3.4E-08 39.2 2.6 18 14-31 31-48 (216)
257 TIGR00157 ribosome small subun 96.7 0.0015 3.2E-08 40.7 2.5 18 14-31 122-139 (245)
258 cd03226 ABC_cobalt_CbiO_domain 96.7 0.0016 3.5E-08 38.9 2.6 18 14-31 28-45 (205)
259 PRK10416 signal recognition pa 96.7 0.0015 3.4E-08 42.2 2.6 20 12-31 114-133 (318)
260 PF07724 AAA_2: AAA domain (Cd 96.7 0.002 4.3E-08 38.2 2.9 20 12-31 3-22 (171)
261 COG1125 OpuBA ABC-type proline 96.7 0.0014 3E-08 42.1 2.3 17 14-30 29-45 (309)
262 TIGR02315 ABC_phnC phosphonate 96.7 0.0017 3.6E-08 39.7 2.6 18 14-31 30-47 (243)
263 PF13238 AAA_18: AAA domain; P 96.7 0.0014 3E-08 35.8 2.0 17 15-31 1-17 (129)
264 cd04167 Snu114p Snu114p subfam 96.7 0.0013 2.8E-08 39.7 2.0 18 14-31 2-19 (213)
265 TIGR00101 ureG urease accessor 96.7 0.002 4.3E-08 39.0 2.8 19 13-31 2-20 (199)
266 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0018 3.9E-08 38.8 2.6 18 14-31 29-46 (211)
267 cd04178 Nucleostemin_like Nucl 96.7 0.0039 8.5E-08 37.0 4.0 20 12-31 117-136 (172)
268 cd03264 ABC_drug_resistance_li 96.7 0.0016 3.4E-08 39.1 2.3 18 14-31 27-44 (211)
269 cd03269 ABC_putative_ATPase Th 96.6 0.0018 4E-08 38.8 2.6 18 14-31 28-45 (210)
270 TIGR03015 pepcterm_ATPase puta 96.6 0.0017 3.6E-08 40.0 2.5 18 14-31 45-62 (269)
271 TIGR00235 udk uridine kinase. 96.6 0.0026 5.6E-08 38.3 3.2 20 12-31 6-25 (207)
272 cd03292 ABC_FtsE_transporter F 96.6 0.0019 4.1E-08 38.7 2.6 18 14-31 29-46 (214)
273 cd03224 ABC_TM1139_LivF_branch 96.6 0.0019 4.1E-08 38.9 2.6 18 14-31 28-45 (222)
274 PF12775 AAA_7: P-loop contain 96.6 0.002 4.3E-08 40.8 2.8 19 13-31 34-52 (272)
275 PRK13695 putative NTPase; Prov 96.6 0.002 4.3E-08 37.7 2.6 19 13-31 1-19 (174)
276 PRK12289 GTPase RsgA; Reviewed 96.6 0.0016 3.4E-08 42.8 2.3 17 15-31 175-191 (352)
277 PRK14722 flhF flagellar biosyn 96.6 0.0019 4.1E-08 42.8 2.7 20 12-31 137-156 (374)
278 cd03257 ABC_NikE_OppD_transpor 96.6 0.002 4.2E-08 39.0 2.6 18 14-31 33-50 (228)
279 TIGR01166 cbiO cobalt transpor 96.6 0.0018 3.9E-08 38.3 2.4 18 14-31 20-37 (190)
280 cd03261 ABC_Org_Solvent_Resist 96.6 0.002 4.3E-08 39.3 2.6 18 14-31 28-45 (235)
281 TIGR03608 L_ocin_972_ABC putat 96.6 0.0021 4.5E-08 38.3 2.6 18 14-31 26-43 (206)
282 cd03262 ABC_HisP_GlnQ_permease 96.6 0.0021 4.5E-08 38.5 2.6 18 14-31 28-45 (213)
283 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0021 4.6E-08 38.4 2.6 18 14-31 27-44 (177)
284 PRK06893 DNA replication initi 96.6 0.0019 4.1E-08 39.7 2.3 18 14-31 41-58 (229)
285 cd03260 ABC_PstB_phosphate_tra 96.6 0.0022 4.7E-08 38.9 2.6 18 14-31 28-45 (227)
286 cd03259 ABC_Carb_Solutes_like 96.6 0.0022 4.7E-08 38.5 2.6 18 14-31 28-45 (213)
287 TIGR02673 FtsE cell division A 96.6 0.0022 4.8E-08 38.5 2.6 18 14-31 30-47 (214)
288 cd03265 ABC_DrrA DrrA is the A 96.6 0.0022 4.8E-08 38.7 2.6 18 14-31 28-45 (220)
289 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0021 4.5E-08 38.7 2.5 19 13-31 39-57 (226)
290 PRK09563 rbgA GTPase YlqF; Rev 96.6 0.0052 1.1E-07 39.0 4.4 21 11-31 120-140 (287)
291 cd03235 ABC_Metallic_Cations A 96.6 0.0022 4.8E-08 38.5 2.6 18 14-31 27-44 (213)
292 PRK05057 aroK shikimate kinase 96.6 0.0025 5.3E-08 37.6 2.7 19 13-31 5-23 (172)
293 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0022 4.8E-08 37.4 2.5 18 14-31 5-22 (188)
294 cd03266 ABC_NatA_sodium_export 96.6 0.0023 5E-08 38.5 2.6 18 14-31 33-50 (218)
295 TIGR02211 LolD_lipo_ex lipopro 96.5 0.0023 5E-08 38.6 2.6 18 14-31 33-50 (221)
296 PRK03839 putative kinase; Prov 96.5 0.0024 5.2E-08 37.5 2.6 18 14-31 2-19 (180)
297 PF13479 AAA_24: AAA domain 96.5 0.0026 5.7E-08 38.7 2.8 20 12-31 3-22 (213)
298 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0024 5.2E-08 38.6 2.6 18 14-31 32-49 (220)
299 cd03219 ABC_Mj1267_LivG_branch 96.5 0.0023 5.1E-08 38.9 2.6 18 14-31 28-45 (236)
300 cd03256 ABC_PhnC_transporter A 96.5 0.0024 5.1E-08 38.9 2.6 18 14-31 29-46 (241)
301 cd03218 ABC_YhbG The ABC trans 96.5 0.0024 5.2E-08 38.8 2.6 18 14-31 28-45 (232)
302 PRK09183 transposase/IS protei 96.5 0.0021 4.5E-08 40.4 2.3 19 13-31 103-121 (259)
303 TIGR01978 sufC FeS assembly AT 96.5 0.0024 5.3E-08 38.9 2.6 18 14-31 28-45 (243)
304 PRK14530 adenylate kinase; Pro 96.5 0.0026 5.7E-08 38.5 2.7 18 14-31 5-22 (215)
305 PRK14721 flhF flagellar biosyn 96.5 0.0024 5.3E-08 42.8 2.7 20 12-31 191-210 (420)
306 TIGR02868 CydC thiol reductant 96.5 0.0023 4.9E-08 43.2 2.6 19 13-31 362-380 (529)
307 cd02023 UMPK Uridine monophosp 96.5 0.0025 5.4E-08 37.9 2.5 17 15-31 2-18 (198)
308 TIGR00064 ftsY signal recognit 96.5 0.0028 6.1E-08 40.1 2.8 19 13-31 73-91 (272)
309 cd03263 ABC_subfamily_A The AB 96.5 0.0026 5.6E-08 38.3 2.6 18 14-31 30-47 (220)
310 PRK15177 Vi polysaccharide exp 96.5 0.0025 5.5E-08 38.6 2.6 18 14-31 15-32 (213)
311 PRK11629 lolD lipoprotein tran 96.5 0.0026 5.6E-08 38.8 2.6 18 14-31 37-54 (233)
312 PRK08084 DNA replication initi 96.5 0.0025 5.5E-08 39.3 2.6 19 13-31 46-64 (235)
313 cd03301 ABC_MalK_N The N-termi 96.5 0.0027 5.8E-08 38.1 2.6 18 14-31 28-45 (213)
314 PRK11248 tauB taurine transpor 96.5 0.0026 5.7E-08 39.5 2.6 18 14-31 29-46 (255)
315 PRK11247 ssuB aliphatic sulfon 96.5 0.0027 5.8E-08 39.7 2.6 18 14-31 40-57 (257)
316 cd02019 NK Nucleoside/nucleoti 96.5 0.0033 7.2E-08 31.9 2.5 17 15-31 2-18 (69)
317 PRK00098 GTPase RsgA; Reviewed 96.5 0.0025 5.5E-08 40.6 2.5 18 14-31 166-183 (298)
318 PRK13949 shikimate kinase; Pro 96.5 0.0029 6.3E-08 37.3 2.6 18 14-31 3-20 (169)
319 TIGR03410 urea_trans_UrtE urea 96.5 0.0029 6.2E-08 38.4 2.6 18 14-31 28-45 (230)
320 cd03258 ABC_MetN_methionine_tr 96.5 0.0029 6.2E-08 38.5 2.6 18 14-31 33-50 (233)
321 cd03216 ABC_Carb_Monos_I This 96.5 0.003 6.6E-08 36.8 2.6 18 14-31 28-45 (163)
322 PRK14532 adenylate kinase; Pro 96.5 0.0029 6.4E-08 37.3 2.6 18 14-31 2-19 (188)
323 PRK06526 transposase; Provisio 96.5 0.0023 5.1E-08 40.2 2.2 19 13-31 99-117 (254)
324 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0026 5.6E-08 38.1 2.4 18 14-31 28-45 (208)
325 TIGR02881 spore_V_K stage V sp 96.4 0.0032 7E-08 39.2 2.8 21 11-31 41-61 (261)
326 cd01131 PilT Pilus retraction 96.4 0.0028 6.2E-08 38.1 2.5 17 15-31 4-20 (198)
327 PRK10895 lipopolysaccharide AB 96.4 0.0029 6.4E-08 38.7 2.6 18 14-31 31-48 (241)
328 PRK10908 cell division protein 96.4 0.003 6.5E-08 38.2 2.6 18 14-31 30-47 (222)
329 PRK12724 flagellar biosynthesi 96.4 0.0023 5E-08 43.2 2.2 19 13-31 224-242 (432)
330 PRK13540 cytochrome c biogenes 96.4 0.003 6.6E-08 37.7 2.6 18 14-31 29-46 (200)
331 TIGR03864 PQQ_ABC_ATP ABC tran 96.4 0.003 6.6E-08 38.6 2.6 18 14-31 29-46 (236)
332 PRK09087 hypothetical protein; 96.4 0.0027 5.9E-08 39.1 2.4 18 14-31 46-63 (226)
333 cd03233 ABC_PDR_domain1 The pl 96.4 0.0031 6.7E-08 37.9 2.6 18 14-31 35-52 (202)
334 COG0218 Predicted GTPase [Gene 96.4 0.0032 6.9E-08 38.6 2.6 24 8-31 20-43 (200)
335 PRK08181 transposase; Validate 96.4 0.0025 5.4E-08 40.4 2.2 19 13-31 107-125 (269)
336 cd03214 ABC_Iron-Siderophores_ 96.4 0.0033 7.1E-08 37.1 2.6 18 14-31 27-44 (180)
337 cd03297 ABC_ModC_molybdenum_tr 96.4 0.0031 6.8E-08 37.9 2.6 19 13-31 24-42 (214)
338 cd03237 ABC_RNaseL_inhibitor_d 96.4 0.0031 6.7E-08 39.2 2.6 18 14-31 27-44 (246)
339 cd03229 ABC_Class3 This class 96.4 0.0033 7.2E-08 37.0 2.6 18 14-31 28-45 (178)
340 TIGR01189 ccmA heme ABC export 96.4 0.0033 7.1E-08 37.5 2.6 18 14-31 28-45 (198)
341 PRK08903 DnaA regulatory inact 96.4 0.0028 6.1E-08 38.4 2.3 18 14-31 44-61 (227)
342 cd03296 ABC_CysA_sulfate_impor 96.4 0.0032 7E-08 38.5 2.6 18 14-31 30-47 (239)
343 cd03298 ABC_ThiQ_thiamine_tran 96.4 0.0033 7.1E-08 37.7 2.6 18 14-31 26-43 (211)
344 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0035 7.5E-08 36.7 2.6 18 14-31 28-45 (173)
345 PRK13638 cbiO cobalt transport 96.4 0.0032 7E-08 39.3 2.6 18 14-31 29-46 (271)
346 PRK14242 phosphate transporter 96.4 0.0033 7.2E-08 38.7 2.6 18 14-31 34-51 (253)
347 PRK13541 cytochrome c biogenes 96.4 0.0034 7.3E-08 37.4 2.6 18 14-31 28-45 (195)
348 cd01120 RecA-like_NTPases RecA 96.4 0.0032 6.9E-08 35.3 2.3 17 15-31 2-18 (165)
349 cd03272 ABC_SMC3_euk Eukaryoti 96.4 0.0029 6.3E-08 38.7 2.3 18 14-31 25-42 (243)
350 PRK10584 putative ABC transpor 96.4 0.0034 7.3E-08 38.1 2.6 18 14-31 38-55 (228)
351 PRK02496 adk adenylate kinase; 96.4 0.004 8.7E-08 36.6 2.8 19 13-31 2-20 (184)
352 PRK08233 hypothetical protein; 96.4 0.0041 8.9E-08 36.1 2.9 19 13-31 4-22 (182)
353 PRK11124 artP arginine transpo 96.4 0.0034 7.3E-08 38.4 2.6 18 14-31 30-47 (242)
354 PRK10247 putative ABC transpor 96.4 0.0034 7.4E-08 38.2 2.6 18 14-31 35-52 (225)
355 TIGR02323 CP_lyasePhnK phospho 96.4 0.0033 7.3E-08 38.7 2.6 18 14-31 31-48 (253)
356 cd03278 ABC_SMC_barmotin Barmo 96.4 0.003 6.6E-08 38.0 2.3 18 14-31 24-41 (197)
357 cd03273 ABC_SMC2_euk Eukaryoti 96.4 0.0032 6.9E-08 38.9 2.5 18 14-31 27-44 (251)
358 cd03232 ABC_PDR_domain2 The pl 96.4 0.0035 7.7E-08 37.3 2.6 18 14-31 35-52 (192)
359 PRK08727 hypothetical protein; 96.4 0.0031 6.6E-08 38.9 2.4 17 15-31 44-60 (233)
360 PRK14247 phosphate ABC transpo 96.4 0.0035 7.5E-08 38.6 2.6 18 14-31 31-48 (250)
361 COG4161 ArtP ABC-type arginine 96.4 0.0029 6.4E-08 38.6 2.2 18 14-31 30-47 (242)
362 cd01849 YlqF_related_GTPase Yl 96.4 0.01 2.2E-07 34.1 4.4 21 11-31 99-119 (155)
363 PRK05642 DNA replication initi 96.4 0.0031 6.7E-08 38.9 2.4 19 13-31 46-64 (234)
364 PRK13538 cytochrome c biogenes 96.4 0.0036 7.8E-08 37.5 2.6 18 14-31 29-46 (204)
365 PRK13539 cytochrome c biogenes 96.3 0.0036 7.8E-08 37.6 2.6 18 14-31 30-47 (207)
366 PRK00093 GTP-binding protein D 96.3 0.015 3.2E-07 38.4 5.7 21 11-31 172-192 (435)
367 TIGR00475 selB selenocysteine- 96.3 0.008 1.7E-07 41.7 4.5 18 14-31 2-19 (581)
368 COG1618 Predicted nucleotide k 96.3 0.0064 1.4E-07 36.6 3.6 21 11-31 4-24 (179)
369 cd03254 ABCC_Glucan_exporter_l 96.3 0.0036 7.8E-08 37.9 2.6 18 14-31 31-48 (229)
370 cd01130 VirB11-like_ATPase Typ 96.3 0.0037 8.1E-08 37.1 2.6 19 13-31 26-44 (186)
371 PRK14974 cell division protein 96.3 0.0032 7E-08 41.1 2.5 20 12-31 140-159 (336)
372 TIGR03238 dnd_assoc_3 dnd syst 96.3 0.0029 6.2E-08 43.4 2.3 17 14-30 34-50 (504)
373 PRK06620 hypothetical protein; 96.3 0.0032 6.9E-08 38.5 2.3 19 13-31 45-63 (214)
374 cd03247 ABCC_cytochrome_bd The 96.3 0.0038 8.3E-08 36.6 2.6 18 14-31 30-47 (178)
375 PRK13851 type IV secretion sys 96.3 0.0041 8.8E-08 40.8 2.9 20 12-31 162-181 (344)
376 cd03223 ABCD_peroxisomal_ALDP 96.3 0.0039 8.5E-08 36.4 2.6 18 14-31 29-46 (166)
377 COG0572 Udk Uridine kinase [Nu 96.3 0.0079 1.7E-07 37.4 4.0 22 10-31 6-27 (218)
378 PRK14239 phosphate transporter 96.3 0.0037 8E-08 38.4 2.6 18 14-31 33-50 (252)
379 TIGR01184 ntrCD nitrate transp 96.3 0.0038 8.2E-08 38.1 2.6 18 14-31 13-30 (230)
380 COG1119 ModF ABC-type molybden 96.3 0.004 8.7E-08 39.4 2.7 18 13-30 58-75 (257)
381 cd03252 ABCC_Hemolysin The ABC 96.3 0.0038 8.2E-08 38.1 2.6 18 14-31 30-47 (237)
382 cd03215 ABC_Carb_Monos_II This 96.3 0.0039 8.5E-08 36.8 2.6 18 14-31 28-45 (182)
383 PRK13649 cbiO cobalt transport 96.3 0.0037 8.1E-08 39.2 2.6 18 14-31 35-52 (280)
384 PRK14273 phosphate ABC transpo 96.3 0.0038 8.3E-08 38.5 2.6 18 14-31 35-52 (254)
385 cd01854 YjeQ_engC YjeQ/EngC. 96.3 0.0039 8.5E-08 39.6 2.7 19 13-31 162-180 (287)
386 PRK11264 putative amino-acid A 96.3 0.0039 8.4E-08 38.3 2.6 18 14-31 31-48 (250)
387 PRK11650 ugpC glycerol-3-phosp 96.3 0.0033 7.1E-08 41.1 2.4 17 15-31 33-49 (356)
388 PRK11432 fbpC ferric transport 96.3 0.0033 7.1E-08 41.1 2.4 18 14-31 34-51 (351)
389 PRK14267 phosphate ABC transpo 96.3 0.0035 7.5E-08 38.6 2.4 18 14-31 32-49 (253)
390 COG4987 CydC ABC-type transpor 96.3 0.0034 7.4E-08 43.5 2.5 19 13-31 365-383 (573)
391 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.004 8.6E-08 38.2 2.6 18 14-31 29-46 (242)
392 PRK13645 cbiO cobalt transport 96.3 0.0039 8.4E-08 39.3 2.6 18 14-31 39-56 (289)
393 cd03245 ABCC_bacteriocin_expor 96.3 0.0041 8.8E-08 37.5 2.6 18 14-31 32-49 (220)
394 PRK06547 hypothetical protein; 96.3 0.005 1.1E-07 36.6 2.9 21 11-31 14-34 (172)
395 PRK14250 phosphate ABC transpo 96.3 0.0041 8.8E-08 38.2 2.6 18 14-31 31-48 (241)
396 cd03283 ABC_MutS-like MutS-lik 96.3 0.0036 7.8E-08 37.8 2.3 18 14-31 27-44 (199)
397 cd03246 ABCC_Protease_Secretio 96.3 0.0043 9.3E-08 36.3 2.6 18 14-31 30-47 (173)
398 PF00910 RNA_helicase: RNA hel 96.3 0.0032 7E-08 34.4 1.9 17 15-31 1-17 (107)
399 PRK06995 flhF flagellar biosyn 96.3 0.0034 7.4E-08 42.8 2.4 19 13-31 257-275 (484)
400 PRK10418 nikD nickel transport 96.3 0.0041 8.9E-08 38.5 2.6 18 14-31 31-48 (254)
401 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.004 8.6E-08 35.7 2.4 18 14-31 28-45 (144)
402 CHL00131 ycf16 sulfate ABC tra 96.3 0.0042 9E-08 38.2 2.6 17 14-30 35-51 (252)
403 cd03267 ABC_NatA_like Similar 96.3 0.0042 9.1E-08 38.1 2.6 18 14-31 49-66 (236)
404 PRK14274 phosphate ABC transpo 96.3 0.0041 9E-08 38.5 2.6 18 14-31 40-57 (259)
405 cd03270 ABC_UvrA_I The excisio 96.3 0.0034 7.3E-08 38.4 2.2 16 14-29 23-38 (226)
406 PRK10744 pstB phosphate transp 96.3 0.0042 9E-08 38.6 2.6 18 14-31 41-58 (260)
407 PRK13543 cytochrome c biogenes 96.3 0.0041 8.9E-08 37.5 2.5 18 14-31 39-56 (214)
408 TIGR01425 SRP54_euk signal rec 96.3 0.0037 8.1E-08 42.1 2.5 20 12-31 100-119 (429)
409 PRK14241 phosphate transporter 96.3 0.0042 9.1E-08 38.4 2.6 18 14-31 32-49 (258)
410 TIGR03411 urea_trans_UrtD urea 96.3 0.0042 9.2E-08 37.9 2.6 18 14-31 30-47 (242)
411 PRK14262 phosphate ABC transpo 96.3 0.0043 9.2E-08 38.2 2.6 18 14-31 31-48 (250)
412 COG0552 FtsY Signal recognitio 96.3 0.0025 5.3E-08 41.8 1.6 44 10-59 137-180 (340)
413 TIGR02770 nickel_nikD nickel i 96.3 0.0043 9.2E-08 37.8 2.6 18 14-31 14-31 (230)
414 TIGR00635 ruvB Holliday juncti 96.3 0.004 8.6E-08 39.2 2.5 18 14-31 32-49 (305)
415 PRK10575 iron-hydroxamate tran 96.3 0.0043 9.2E-08 38.7 2.6 18 14-31 39-56 (265)
416 PRK13947 shikimate kinase; Pro 96.3 0.0046 1E-07 35.8 2.6 18 14-31 3-20 (171)
417 PRK09580 sufC cysteine desulfu 96.2 0.0043 9.4E-08 38.0 2.6 17 14-30 29-45 (248)
418 cd03234 ABCG_White The White s 96.2 0.0044 9.5E-08 37.6 2.6 18 14-31 35-52 (226)
419 TIGR02769 nickel_nikE nickel i 96.2 0.0043 9.3E-08 38.6 2.6 18 14-31 39-56 (265)
420 PRK15112 antimicrobial peptide 96.2 0.0042 9.1E-08 38.8 2.5 18 14-31 41-58 (267)
421 cd01918 HprK_C HprK/P, the bif 96.2 0.0043 9.4E-08 36.4 2.4 19 13-31 15-33 (149)
422 PRK15056 manganese/iron transp 96.2 0.0043 9.4E-08 38.8 2.6 18 14-31 35-52 (272)
423 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.0044 9.6E-08 37.7 2.6 18 14-31 50-67 (224)
424 PRK11701 phnK phosphonate C-P 96.2 0.0043 9.4E-08 38.4 2.6 18 14-31 34-51 (258)
425 cd03231 ABC_CcmA_heme_exporter 96.2 0.0045 9.8E-08 37.0 2.6 18 14-31 28-45 (201)
426 cd03240 ABC_Rad50 The catalyti 96.2 0.0038 8.2E-08 37.8 2.2 18 14-31 24-41 (204)
427 PRK11300 livG leucine/isoleuci 96.2 0.0044 9.6E-08 38.1 2.6 18 14-31 33-50 (255)
428 TIGR03005 ectoine_ehuA ectoine 96.2 0.0045 9.7E-08 38.2 2.6 18 14-31 28-45 (252)
429 COG4619 ABC-type uncharacteriz 96.2 0.0042 9.1E-08 38.0 2.4 18 14-31 31-48 (223)
430 PRK05703 flhF flagellar biosyn 96.2 0.0039 8.6E-08 41.7 2.5 18 14-31 223-240 (424)
431 PRK10751 molybdopterin-guanine 96.2 0.0046 1E-07 37.0 2.5 19 13-31 7-25 (173)
432 cd01128 rho_factor Transcripti 96.2 0.0044 9.6E-08 38.9 2.5 20 12-31 16-35 (249)
433 PRK11831 putative ABC transpor 96.2 0.0045 9.8E-08 38.7 2.6 18 14-31 35-52 (269)
434 cd01428 ADK Adenylate kinase ( 96.2 0.0041 8.9E-08 36.5 2.3 18 14-31 1-18 (194)
435 PRK14261 phosphate ABC transpo 96.2 0.0046 1E-07 38.1 2.6 18 14-31 34-51 (253)
436 TIGR02324 CP_lyasePhnL phospho 96.2 0.0048 1E-07 37.3 2.6 18 14-31 36-53 (224)
437 cd00880 Era_like Era (E. coli 96.2 0.0025 5.4E-08 35.0 1.3 15 17-31 1-15 (163)
438 PRK09544 znuC high-affinity zi 96.2 0.0047 1E-07 38.4 2.6 18 14-31 32-49 (251)
439 PF01695 IstB_IS21: IstB-like 96.2 0.0039 8.4E-08 37.2 2.1 20 12-31 47-66 (178)
440 cd03236 ABC_RNaseL_inhibitor_d 96.2 0.0047 1E-07 38.6 2.6 18 14-31 28-45 (255)
441 PRK10771 thiQ thiamine transpo 96.2 0.0047 1E-07 37.6 2.6 18 14-31 27-44 (232)
442 PRK11000 maltose/maltodextrin 96.2 0.0045 9.7E-08 40.6 2.6 18 14-31 31-48 (369)
443 PRK14531 adenylate kinase; Pro 96.2 0.0052 1.1E-07 36.4 2.7 19 13-31 3-21 (183)
444 TIGR00972 3a0107s01c2 phosphat 96.2 0.0042 9.2E-08 38.2 2.4 18 14-31 29-46 (247)
445 PLN02772 guanylate kinase 96.2 0.0055 1.2E-07 41.0 3.0 19 13-31 136-154 (398)
446 PRK12298 obgE GTPase CgtA; Rev 96.2 0.012 2.7E-07 39.0 4.6 18 14-31 161-178 (390)
447 PRK13632 cbiO cobalt transport 96.2 0.0042 9.1E-08 38.8 2.4 18 14-31 37-54 (271)
448 TIGR03265 PhnT2 putative 2-ami 96.2 0.0045 9.8E-08 40.4 2.6 18 14-31 32-49 (353)
449 PRK14240 phosphate transporter 96.2 0.0048 1E-07 37.9 2.6 18 14-31 31-48 (250)
450 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0049 1.1E-07 37.3 2.6 18 14-31 42-59 (226)
451 cd02021 GntK Gluconate kinase 96.2 0.0048 1E-07 35.0 2.4 17 15-31 2-18 (150)
452 cd03294 ABC_Pro_Gly_Bertaine T 96.2 0.0043 9.2E-08 38.8 2.4 18 14-31 52-69 (269)
453 PRK14259 phosphate ABC transpo 96.2 0.0048 1E-07 38.6 2.6 18 14-31 41-58 (269)
454 COG1484 DnaC DNA replication p 96.2 0.0046 9.9E-08 38.8 2.5 20 12-31 105-124 (254)
455 PRK11144 modC molybdate transp 96.2 0.0047 1E-07 40.2 2.6 18 14-31 26-43 (352)
456 PTZ00088 adenylate kinase 1; P 96.2 0.0052 1.1E-07 38.1 2.7 19 13-31 7-25 (229)
457 smart00053 DYNc Dynamin, GTPas 96.2 0.0048 1E-07 38.6 2.5 21 11-31 25-45 (240)
458 PF03205 MobB: Molybdopterin g 96.2 0.0035 7.6E-08 36.1 1.8 18 14-31 2-19 (140)
459 COG1220 HslU ATP-dependent pro 96.2 0.0054 1.2E-07 40.9 2.8 21 11-31 49-69 (444)
460 TIGR01288 nodI ATP-binding ABC 96.2 0.0049 1.1E-07 39.2 2.6 18 14-31 32-49 (303)
461 COG4136 ABC-type uncharacteriz 96.2 0.0046 9.9E-08 37.3 2.3 16 15-30 31-46 (213)
462 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0048 1E-07 35.5 2.3 18 14-31 24-41 (133)
463 TIGR03740 galliderm_ABC gallid 96.2 0.0052 1.1E-07 37.2 2.6 18 14-31 28-45 (223)
464 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0052 1.1E-07 37.3 2.6 18 14-31 30-47 (234)
465 PRK09452 potA putrescine/sperm 96.2 0.0043 9.4E-08 40.9 2.4 18 14-31 42-59 (375)
466 cd01855 YqeH YqeH. YqeH is an 96.1 0.0045 9.7E-08 36.6 2.2 19 13-31 128-146 (190)
467 cd03279 ABC_sbcCD SbcCD and ot 96.1 0.005 1.1E-07 37.3 2.5 18 14-31 30-47 (213)
468 PRK09825 idnK D-gluconate kina 96.1 0.0048 1E-07 36.6 2.4 18 14-31 5-22 (176)
469 cd03228 ABCC_MRP_Like The MRP 96.1 0.0049 1.1E-07 36.0 2.4 18 14-31 30-47 (171)
470 cd01124 KaiC KaiC is a circadi 96.1 0.0047 1E-07 36.0 2.3 17 15-31 2-18 (187)
471 cd00227 CPT Chloramphenicol (C 96.1 0.0052 1.1E-07 36.0 2.5 18 14-31 4-21 (175)
472 PRK09493 glnQ glutamine ABC tr 96.1 0.0054 1.2E-07 37.5 2.6 18 14-31 29-46 (240)
473 KOG0060|consensus 96.1 0.0044 9.6E-08 43.4 2.4 19 13-31 462-480 (659)
474 PRK11607 potG putrescine trans 96.1 0.0045 9.8E-08 40.8 2.4 17 15-31 48-64 (377)
475 PF13476 AAA_23: AAA domain; P 96.1 0.0033 7.1E-08 36.7 1.6 17 15-31 22-38 (202)
476 TIGR03771 anch_rpt_ABC anchore 96.1 0.0053 1.2E-07 37.3 2.5 19 13-31 7-25 (223)
477 cd03243 ABC_MutS_homologs The 96.1 0.005 1.1E-07 36.9 2.4 19 13-31 30-48 (202)
478 cd03253 ABCC_ATM1_transporter 96.1 0.0054 1.2E-07 37.3 2.6 18 14-31 29-46 (236)
479 PRK14237 phosphate transporter 96.1 0.0048 1E-07 38.5 2.4 18 14-31 48-65 (267)
480 PRK13548 hmuV hemin importer A 96.1 0.0055 1.2E-07 38.1 2.6 18 14-31 30-47 (258)
481 PTZ00258 GTP-binding protein; 96.1 0.015 3.2E-07 38.9 4.7 26 10-36 19-44 (390)
482 PRK14256 phosphate ABC transpo 96.1 0.0049 1.1E-07 38.0 2.4 18 14-31 32-49 (252)
483 PRK00131 aroK shikimate kinase 96.1 0.0059 1.3E-07 35.1 2.5 19 13-31 5-23 (175)
484 cd03217 ABC_FeS_Assembly ABC-t 96.1 0.0058 1.3E-07 36.6 2.6 18 14-31 28-45 (200)
485 TIGR01351 adk adenylate kinase 96.1 0.0049 1.1E-07 37.2 2.3 18 14-31 1-18 (210)
486 PRK13646 cbiO cobalt transport 96.1 0.0055 1.2E-07 38.7 2.6 18 14-31 35-52 (286)
487 PRK15093 antimicrobial peptide 96.1 0.0048 1E-07 39.8 2.4 18 14-31 35-52 (330)
488 PRK15064 ABC transporter ATP-b 96.1 0.0051 1.1E-07 41.7 2.6 18 14-31 29-46 (530)
489 COG1118 CysA ABC-type sulfate/ 96.1 0.0046 1E-07 40.5 2.3 18 14-31 30-47 (345)
490 PRK10253 iron-enterobactin tra 96.1 0.0057 1.2E-07 38.1 2.6 18 14-31 35-52 (265)
491 cd03244 ABCC_MRP_domain2 Domai 96.1 0.0051 1.1E-07 37.1 2.3 18 14-31 32-49 (221)
492 TIGR01277 thiQ thiamine ABC tr 96.1 0.0058 1.3E-07 36.8 2.6 18 14-31 26-43 (213)
493 TIGR01188 drrA daunorubicin re 96.1 0.0056 1.2E-07 38.9 2.6 18 14-31 21-38 (302)
494 PRK14244 phosphate ABC transpo 96.1 0.0058 1.3E-07 37.6 2.6 18 14-31 33-50 (251)
495 cd03290 ABCC_SUR1_N The SUR do 96.1 0.0053 1.1E-07 37.0 2.4 18 14-31 29-46 (218)
496 PLN02165 adenylate isopentenyl 96.1 0.0078 1.7E-07 39.5 3.3 18 14-31 45-62 (334)
497 PRK11174 cysteine/glutathione 96.1 0.0053 1.1E-07 42.0 2.6 19 13-31 377-395 (588)
498 PRK13648 cbiO cobalt transport 96.1 0.0058 1.2E-07 38.1 2.6 18 14-31 37-54 (269)
499 PRK09984 phosphonate/organopho 96.1 0.0058 1.3E-07 37.9 2.6 18 14-31 32-49 (262)
500 cd00464 SK Shikimate kinase (S 96.1 0.006 1.3E-07 34.5 2.5 17 15-31 2-18 (154)
No 1
>KOG0084|consensus
Probab=99.60 E-value=2.3e-15 Score=90.99 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=44.5
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~ 62 (65)
+...++.||++++||+|||||||+.| |..+.|.+.|.+||| ||+-.++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~R------f~~~~f~e~~~sTIG-VDf~~rt~e 52 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLR------FKDDTFTESYISTIG-VDFKIRTVE 52 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhh------hccCCcchhhcceee-eEEEEEEee
Confidence 45678999999999999999999998 999999999999999 887765554
No 2
>KOG0094|consensus
Probab=99.50 E-value=4.5e-14 Score=85.65 Aligned_cols=50 Identities=28% Similarity=0.224 Sum_probs=44.9
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEecC
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDTLE 65 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i~~ 65 (65)
.-..+|++++||.+||||||+.| |+.+.|...|.+||| +||.+.+..+.|
T Consensus 19 ~~k~~KlVflGdqsVGKTslItR------f~yd~fd~~YqATIG-iDFlskt~~l~d 68 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITR------FMYDKFDNTYQATIG-IDFLSKTMYLED 68 (221)
T ss_pred cceEEEEEEEccCccchHHHHHH------HHHhhhcccccceee-eEEEEEEEEEcC
Confidence 34559999999999999999998 999999999999999 999998876654
No 3
>KOG0078|consensus
Probab=99.47 E-value=1.9e-13 Score=83.16 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=46.8
Q ss_pred CCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 5 NEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 5 ~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
...++++.+|++++||++|||||++.| |.++.|...|..||| |||..+++.+
T Consensus 5 ~~~~~d~~~kvlliGDs~vGKt~~l~r------f~d~~f~~~~~sTiG-IDFk~kti~l 56 (207)
T KOG0078|consen 5 AKEDYDYLFKLLLIGDSGVGKTCLLLR------FSDDSFNTSFISTIG-IDFKIKTIEL 56 (207)
T ss_pred ccCCcceEEEEEEECCCCCchhHhhhh------hhhccCcCCccceEE-EEEEEEEEEe
Confidence 344788999999999999999999998 999999999999999 8998877764
No 4
>KOG0394|consensus
Probab=99.37 E-value=4.8e-13 Score=80.63 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=42.8
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
.....+||+++||+|||||||+.+ |..+.|...|..||| +||..+.+.|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~------yv~~kF~~qykaTIg-adFltKev~V 53 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQ------YVNKKFSQQYKATIG-ADFLTKEVQV 53 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHH------HHHHHHHHHhccccc-hhheeeEEEE
Confidence 446679999999999999999998 999999999999999 7887766554
No 5
>KOG0080|consensus
Probab=99.37 E-value=2.7e-12 Score=76.46 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~ 62 (65)
..+...+|++++|++|||||||+.| |..+.|.+....||| +||..+...
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllr------Fv~~~fd~~~~~tIG-vDFkvk~m~ 54 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLR------FVSNTFDDLHPTTIG-VDFKVKVMQ 54 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHH------HHhcccCccCCceee-eeEEEEEEE
Confidence 4567789999999999999999998 999999999999999 777666544
No 6
>KOG0098|consensus
Probab=99.34 E-value=2.5e-12 Score=77.75 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=42.4
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEee---------EEEEEEecC
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQ---------YRIYKDTLE 65 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~---------~~~~~~i~~ 65 (65)
+.+.+|++++||.|||||||+.| |+.+.|.+.+..|+| +|+ ...+++|||
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllr------f~~krF~~~hd~TiG-vefg~r~~~id~k~IKlqiwD 61 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLR------FTDKRFQPVHDLTIG-VEFGARMVTIDGKQIKLQIWD 61 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHH------HhccCccccccceee-eeeceeEEEEcCceEEEEEEe
Confidence 46789999999999999999998 999999999999998 565 445555665
No 7
>KOG0087|consensus
Probab=99.31 E-value=5.7e-12 Score=77.07 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=45.0
Q ss_pred CCCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 4 DNEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 4 ~~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
+.+...++.||++++||++||||.|+.| |..++|..+-.+||| +|+.+.++
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsR------ftrnEF~~~SksTIG-vef~t~t~ 56 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSR------FTRNEFSLESKSTIG-VEFATRTV 56 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHH------hcccccCccccccee-EEEEeece
Confidence 3456789999999999999999999998 999999999999999 88887544
No 8
>KOG0092|consensus
Probab=99.28 E-value=6.5e-12 Score=75.86 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=39.9
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~ 62 (65)
...+|++++|+++||||||+.| |..+.|.+...|||| .-|+++++.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~R------fvk~~F~e~~e~TIG-aaF~tktv~ 48 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLR------FVKDQFHENIEPTIG-AAFLTKTVT 48 (200)
T ss_pred cceEEEEEECCCCCCchhhhhh------hhhCccccccccccc-cEEEEEEEE
Confidence 3569999999999999999998 999999999999999 566665544
No 9
>KOG0393|consensus
Probab=99.28 E-value=1.9e-12 Score=78.51 Aligned_cols=45 Identities=42% Similarity=0.636 Sum_probs=42.6
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
...|++++||++|||||++.. |..+.|+..|.||++ |+|++.+.|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~------~t~~~fp~~yvPTVF--dnys~~v~V 47 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLIS------YTTNAFPEEYVPTVF--DNYSANVTV 47 (198)
T ss_pred eeeEEEEECCCCcCceEEEEE------eccCcCcccccCeEE--ccceEEEEe
Confidence 468999999999999999998 999999999999999 999999887
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.28 E-value=1e-11 Score=73.87 Aligned_cols=44 Identities=34% Similarity=0.452 Sum_probs=37.9
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
...+|++++|++|||||||+.| |..+.|..+|.||++ +.|...+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~------~~~~~f~~~~~pT~~--~~~~~~~ 46 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHV------FAKDCFPENYVPTVF--ENYTASF 46 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHH------HHhCCCCCccCCcee--eeeEEEE
Confidence 4568999999999999999998 888999999999998 6665443
No 11
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.27 E-value=9.6e-12 Score=73.99 Aligned_cols=40 Identities=45% Similarity=0.732 Sum_probs=35.9
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
.+|++++|+++||||+|+.| |..+.|...|.||++ +.|..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~------~~~~~f~~~~~~t~~--~~~~~ 42 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLIC------YTTNAFPKEYIPTVF--DNYSA 42 (191)
T ss_pred cEEEEEECCCCCCHHHHHHH------HHhCCCCcCCCCceE--eeeEE
Confidence 48999999999999999998 999999999999999 66653
No 12
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.26 E-value=1.1e-11 Score=72.88 Aligned_cols=39 Identities=49% Similarity=0.833 Sum_probs=35.0
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|+.|||||||+.+ |..+.|...|.||++ +.|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~------~~~~~f~~~~~pt~~--~~~~~ 40 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLIS------YTTNKFPSEYVPTVF--DNYAV 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCcee--eeeEE
Confidence 6999999999999999998 888889889999998 66653
No 13
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.25 E-value=1.9e-11 Score=73.41 Aligned_cols=47 Identities=81% Similarity=1.316 Sum_probs=37.1
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.+||+++|+++||||||+.+++++..|..+.|..+|.||++.+++|.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~ 48 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYR 48 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceeccccee
Confidence 47999999999999999976666666666778888999997334443
No 14
>KOG0079|consensus
Probab=99.23 E-value=3.9e-12 Score=74.96 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=43.5
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
.++..+|.+++||+|||||+|+.| |..+.|...|..|+| +|+..+++.|
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~r------F~ddtFs~sYitTiG-vDfkirTv~i 52 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLR------FADDTFSGSYITTIG-VDFKIRTVDI 52 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHH------HhhcccccceEEEee-eeEEEEEeec
Confidence 345678999999999999999998 999999999999999 8988877664
No 15
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.23 E-value=2.3e-11 Score=71.94 Aligned_cols=40 Identities=40% Similarity=0.530 Sum_probs=35.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+|++++|++|||||||+.+ |..+.|...|.||++ +.|...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~------~~~~~f~~~~~~t~~--~~~~~~ 41 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQV------FAKDCYPETYVPTVF--ENYTAS 41 (178)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCcCCCCcCCceE--EEEEEE
Confidence 7999999999999999998 888899999999998 666533
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.23 E-value=3.1e-11 Score=74.52 Aligned_cols=45 Identities=33% Similarity=0.445 Sum_probs=38.8
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+....+|++++|++|||||||+.+ |..+.|...|.||++ +.|...
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r------~~~~~F~~~y~pTi~--~~~~~~ 53 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQV------LAKDCYPETYVPTVF--ENYTAG 53 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHH------HhcCCCCCCcCCcee--eeeEEE
Confidence 445678999999999999999998 888999999999998 666543
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.19 E-value=3.8e-11 Score=71.14 Aligned_cols=40 Identities=40% Similarity=0.706 Sum_probs=35.6
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+|++++|+.|||||+|+.| |..+.|..+|.||++ +.|...
T Consensus 2 ~kivv~G~~~vGKTsli~~------~~~~~f~~~~~~Ti~--~~~~~~ 41 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLIC------YTSNKFPTDYIPTVF--DNFSAN 41 (176)
T ss_pred eEEEEECCCCCcHHHHHHH------HhcCCCCCCCCCcce--eeeEEE
Confidence 6999999999999999998 999999999999998 666543
No 18
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.19 E-value=4e-11 Score=71.10 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|++|||||||+.| |..+.|..+|.||++ .+++.+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~------~~~~~f~~~~~~T~g-~~~~~~ 40 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVK------YVEGEFDEDYIQTLG-VNFMEK 40 (182)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCccc-eEEEEE
Confidence 5899999999999999998 888889989999998 455443
No 19
>KOG0095|consensus
Probab=99.18 E-value=5.5e-11 Score=70.37 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
.+...||++++|..|||||||+.| |..+-|+.....||| +||-.++++|
T Consensus 3 dykflfkivlvgnagvgktclvrr------ftqglfppgqgatig-vdfmiktvev 51 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRR------FTQGLFPPGQGATIG-VDFMIKTVEV 51 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhh------hhccCCCCCCCceee-eeEEEEEEEE
Confidence 356789999999999999999998 999999999999999 8988877664
No 20
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.18 E-value=3.3e-11 Score=73.94 Aligned_cols=39 Identities=38% Similarity=0.568 Sum_probs=35.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|++|||||||+.+ |..+.|+..|.||++ +.|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~------~~~~~f~~~y~pTi~--~~~~~ 40 (222)
T cd04173 2 CKIVVVGDAECGKTALLQV------FAKDAYPGSYVPTVF--ENYTA 40 (222)
T ss_pred eEEEEECCCCCCHHHHHHH------HHcCCCCCccCCccc--cceEE
Confidence 7999999999999999998 888899999999998 66653
No 21
>PLN03110 Rab GTPase; Provisional
Probab=99.16 E-value=1.7e-10 Score=69.96 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCCCCCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 1 MLSDNEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 1 m~~~~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
|..+..+...+.+|++++|++|||||+|+.+ +..+.|...+.||++ +++...
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~------l~~~~~~~~~~~t~g-~~~~~~ 52 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSR------FTRNEFCLESKSTIG-VEFATR 52 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCcee-EEEEEE
Confidence 3444555566789999999999999999997 877778778889988 555443
No 22
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=1.3e-10 Score=70.69 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=36.9
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
...+|++++|++|||||+|+.+ |..+.|...|.||++ ++.+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~------~~~~~f~~~~~~tig-~~~~~~ 53 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKR------HLTGEFEKKYEPTIG-VEVHPL 53 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHH------HhhCCCCCccCCccc-eeEEEE
Confidence 5678999999999999999998 888889888999998 555543
No 23
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.14 E-value=9.9e-11 Score=68.35 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=33.4
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhcccccccccc-ccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~ 52 (65)
+..+|++++|++|||||+|+.| |..+.|. .+|.||++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~------~~~~~f~~~~~~~T~~ 39 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRA------FLGRSFSLNAYSPTIK 39 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHH------HhCCCCCcccCCCccC
Confidence 4568999999999999999998 8888888 88999987
No 24
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.12 E-value=2.2e-10 Score=68.64 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=35.8
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
....+|++++|+.|||||+|+.+ |..+.|...|.|+++ .+++..
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~------~~~~~~~~~~~~t~~-~~~~~~ 46 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILAS------LQDGSTESPYGYNMG-IDYKTT 46 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCcce-eEEEEE
Confidence 34669999999999999999998 888888888888887 444433
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.09 E-value=1.8e-10 Score=67.48 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=35.1
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
.+|++++|+.|||||+|+.+ |..+.|...+.||++ +.+...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~------~~~~~f~~~~~~t~~--~~~~~~ 42 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQ------FISHSFPDYHDPTIE--DAYKQQ 42 (172)
T ss_pred ceEEEEECCCCCcHHHHHHH------HHhCCCCCCcCCccc--ceEEEE
Confidence 37999999999999999998 888888888999998 666543
No 26
>KOG0086|consensus
Probab=99.09 E-value=9.7e-11 Score=69.51 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 5 NEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 5 ~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+...+++.+|++++|++|.|||||+++ |..+.|.+.-..||| +||-+.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~------Fie~kfkDdssHTiG-veFgSr 49 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQ------FIENKFKDDSSHTIG-VEFGSR 49 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHH------HHHhhhcccccceee-eeecce
Confidence 345688999999999999999999998 999999998889998 787654
No 27
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.09 E-value=2.2e-10 Score=69.28 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=34.9
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
.++++|++|||||||+.| |..+.|...|.||++ ++++...+
T Consensus 2 ~vvvlG~~gVGKTSli~r------~~~~~f~~~~~~Ti~-~~~~~~~i 42 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRR------FTDDTFCEACKSGVG-VDFKIKTV 42 (202)
T ss_pred EEEEECcCCCCHHHHHHH------HHhCCCCCcCCCcce-eEEEEEEE
Confidence 589999999999999998 888999999999998 56655443
No 28
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.08 E-value=3.4e-10 Score=66.20 Aligned_cols=39 Identities=33% Similarity=0.302 Sum_probs=34.1
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
||+++|+.|||||+|+.+ |..+.|..+|.||++ .+++..
T Consensus 2 ki~ivG~~~vGKTsli~~------~~~~~f~~~~~~t~~-~~~~~~ 40 (170)
T cd04108 2 KVIVVGDLSVGKTCLINR------FCKDVFDKNYKATIG-VDFEME 40 (170)
T ss_pred EEEEECCCCCCHHHHHHH------HhcCCCCCCCCCcee-eEEEEE
Confidence 899999999999999998 888899999999998 455433
No 29
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.08 E-value=2.5e-10 Score=67.03 Aligned_cols=39 Identities=46% Similarity=0.764 Sum_probs=34.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|+.+||||+|+.| |..+.|...|.||++ +.|..
T Consensus 2 ~ki~iiG~~~vGKSsli~~------~~~~~f~~~~~~t~~--~~~~~ 40 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLIS------YTTNAFPGEYIPTVF--DNYSA 40 (174)
T ss_pred eEEEEECCCCCCHHHHHHH------HhcCCCCCcCCCcce--eeeEE
Confidence 6999999999999999998 888889889999987 66553
No 30
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.08 E-value=2.3e-10 Score=64.95 Aligned_cols=39 Identities=36% Similarity=0.480 Sum_probs=33.2
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|++|||||+|+.+ +..+.|...+.||++ +.+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~------~~~~~~~~~~~~t~~--~~~~~ 40 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQ------LIQNHFVDEYDPTIE--DSYRK 40 (162)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCCCcCCcCCcch--heEEE
Confidence 6999999999999999997 777788888888887 55543
No 31
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.07 E-value=3.3e-10 Score=68.42 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=36.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
+|++++|+++||||+|+.+ |..+.|...|.||++ +|++...+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~------l~~~~~~~~~~~T~~-~d~~~~~i 42 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRR------FAKEGFGKSYKQTIG-LDFFSKRV 42 (215)
T ss_pred CEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCcee-EEEEEEEE
Confidence 5899999999999999998 888889999999998 67766544
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.07 E-value=4.5e-10 Score=65.38 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=35.2
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
+.+|++++|+++||||+|+.+ +..+.|...+.||++ +++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~------~~~~~~~~~~~~t~~-~~~~~ 43 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQ------YTDNKFNPKFITTVG-IDFRE 43 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHH------HhcCCCCccCCCccc-eEEEE
Confidence 568999999999999999998 888888888999987 45543
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.06 E-value=4.2e-10 Score=67.19 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=33.6
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
+|++++|++|||||||+.+ |..+.|...+.||++ .+++.
T Consensus 1 ~KivivG~~~vGKTsli~~------l~~~~~~~~~~~t~~-~d~~~ 39 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKR------YVHGIFSQHYKATIG-VDFAL 39 (201)
T ss_pred CEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCcee-EEEEE
Confidence 5899999999999999998 888888888999998 45443
No 34
>KOG0093|consensus
Probab=99.06 E-value=2.9e-10 Score=67.06 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=41.8
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+++.++.+|++++|++.|||||++.| |..+.|...|.+|+| |+|..+
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~r------y~ddSFt~afvsTvG-idFKvK 61 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFR------YADDSFTSAFVSTVG-IDFKVK 61 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHH------hhccccccceeeeee-eeEEEe
Confidence 44668889999999999999999998 999999999999999 786544
No 35
>KOG0091|consensus
Probab=99.05 E-value=2.1e-10 Score=68.60 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=38.8
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
..+.|+++++||+.||||||++. |..+.|..--.||+| +|||.
T Consensus 5 f~yqfrlivigdstvgkssll~~------ft~gkfaelsdptvg-vdffa 47 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRY------FTEGKFAELSDPTVG-VDFFA 47 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHH------HhcCcccccCCCccc-hHHHH
Confidence 35789999999999999999997 999999998899999 88764
No 36
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.05 E-value=1.8e-10 Score=65.97 Aligned_cols=42 Identities=40% Similarity=0.528 Sum_probs=35.7
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~ 62 (65)
||+++|+.+||||+|+.+ |..+.|...+.||++ .+.+...+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~------~~~~~~~~~~~~t~~-~~~~~~~~~ 42 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINR------LINGEFPENYIPTIG-IDSYSKEVS 42 (162)
T ss_dssp EEEEEESTTSSHHHHHHH------HHHSSTTSSSETTSS-EEEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHH------HHhhccccccccccc-ccccccccc
Confidence 899999999999999998 888888899999985 476665554
No 37
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.05 E-value=2.6e-10 Score=65.10 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=33.3
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+|++++|+.|||||||+.+ +..+.|...+.||++ +.+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~------~~~~~~~~~~~~t~~--~~~~~~ 41 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQ------FVQGIFVEKYDPTIE--DSYRKQ 41 (163)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCCCCcccCCchh--hhEEEE
Confidence 7999999999999999997 777778888888876 555543
No 38
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.05 E-value=4.6e-10 Score=68.03 Aligned_cols=34 Identities=38% Similarity=0.502 Sum_probs=31.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|++|||||||+.+ |..+.|...+.||++
T Consensus 1 vKIvlvGd~gVGKTSLi~~------~~~~~f~~~~~~Tig 34 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHL------ICKNQVLGRPSWTVG 34 (202)
T ss_pred CEEEEECCCCCCHHHHHHH------HHcCCCCCCCCccee
Confidence 4899999999999999998 888889888999998
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.04 E-value=6e-10 Score=64.37 Aligned_cols=38 Identities=29% Similarity=0.614 Sum_probs=33.0
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
+|++++|++|+|||+|+.+ +..+.|...+.||++ .+.+
T Consensus 1 ~ki~vvG~~~~GKTsli~~------~~~~~~~~~~~~t~~-~~~~ 38 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCR------FTDNEFHSSHISTIG-VDFK 38 (161)
T ss_pred CEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCcee-eEEE
Confidence 5899999999999999998 888888888999998 4444
No 40
>PLN00023 GTP-binding protein; Provisional
Probab=99.04 E-value=6.9e-10 Score=71.78 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=37.7
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
.....+||+++|++|||||||+.+ |..+.|...+.||+| .+++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~r------f~~g~F~~~~~pTIG-~d~~ik 61 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHL------IVKGSSIARPPQTIG-CTVGVK 61 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHH------HhcCCcccccCCcee-eeEEEE
Confidence 445679999999999999999998 888889889999998 455433
No 41
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.03 E-value=6.9e-10 Score=67.13 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=35.5
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
.+||+++|+++||||+|+.+ +..+.|...+.||++ .|++...+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~------l~~~~~~~~~~~ti~-~d~~~~~i 44 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKR------FTEGRFAEVSDPTVG-VDFFSRLI 44 (211)
T ss_pred ceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCceec-eEEEEEEE
Confidence 58999999999999999997 777778888889987 56655433
No 42
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.03 E-value=6.1e-10 Score=64.76 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=32.9
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
+|++++|++|||||||+.+ +..+.+...+.||++ ++.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~------~~~~~~~~~~~~t~~-~~~~~ 39 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLG-VEVHP 39 (166)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCcee-eEEEE
Confidence 5899999999999999997 777788888889987 45443
No 43
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.02 E-value=8.3e-10 Score=65.96 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=34.6
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
+..+|++++|++|||||||+.+ |..+.|...+.||++ ++..
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~------l~~~~~~~~~~~t~~-~~~~ 44 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLR------FADNTFSGSYITTIG-VDFK 44 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHH------HhcCCCCCCcCcccc-ceeE
Confidence 4569999999999999999998 888888888889987 4543
No 44
>PTZ00369 Ras-like protein; Provisional
Probab=99.01 E-value=5.7e-10 Score=66.06 Aligned_cols=40 Identities=35% Similarity=0.442 Sum_probs=34.4
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
.+|++++|++|||||||+.+ |..+.|...+.||++ +.|.+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~------~~~~~~~~~~~~t~~--~~~~~ 44 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQ------FIQNHFIDEYDPTIE--DSYRK 44 (189)
T ss_pred ceEEEEECCCCCCHHHHHHH------HhcCCCCcCcCCchh--hEEEE
Confidence 58999999999999999998 888888888888887 55554
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.01 E-value=7.9e-10 Score=63.08 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=32.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
+|++++|+++||||||+.+ +..+.|...+.||++ .+..
T Consensus 1 ~ki~~vG~~~vGKTsli~~------l~~~~~~~~~~~t~~-~~~~ 38 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKR------YCEGRFVSKYLPTIG-IDYG 38 (168)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCccc-eeEE
Confidence 4899999999999999998 888888888899987 4443
No 46
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.01 E-value=8.9e-10 Score=63.60 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=31.1
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+|++++|+.+||||||+.+ +..+.|...+.||++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~------~~~~~~~~~~~~t~~ 36 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQ------FTEKKFMADCPHTIG 36 (166)
T ss_pred ceEEEEECCCCCCHHHHHHH------HhcCCCCCCCCcccc
Confidence 48999999999999999998 888888888888876
No 47
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.00 E-value=7.6e-10 Score=65.60 Aligned_cols=38 Identities=37% Similarity=0.524 Sum_probs=33.2
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.|++++|++|||||+|+.+ |..+.|...|.||++ +.|.
T Consensus 1 ~kivivG~~~vGKTsli~~------~~~~~~~~~~~~t~~--~~~~ 38 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNV------FTRGYFPQVYEPTVF--ENYV 38 (189)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCCccCCcce--eeeE
Confidence 3899999999999999998 888888888999987 5554
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.00 E-value=5.7e-10 Score=63.99 Aligned_cols=40 Identities=33% Similarity=0.420 Sum_probs=34.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+|++++|++|||||+|+.+ +..+.|...+.||++ +++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~------~~~~~~~~~~~~t~~--~~~~~~ 41 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQ------FVSGTFIEKYDPTIE--DFYRKE 41 (163)
T ss_pred eEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCchh--heEEEE
Confidence 7999999999999999998 888888888888876 665543
No 49
>KOG0395|consensus
Probab=99.00 E-value=2.6e-10 Score=68.98 Aligned_cols=45 Identities=29% Similarity=0.348 Sum_probs=41.8
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
..+|++++|.+|||||+|..+ |..+.|...|.||++ |+|++.+.+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~q------f~~~~f~~~y~ptie--d~y~k~~~v 46 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQ------FLTGRFVEDYDPTIE--DSYRKELTV 46 (196)
T ss_pred CceEEEEECCCCCCcchheee------ecccccccccCCCcc--ccceEEEEE
Confidence 358999999999999999998 999999999999999 999988875
No 50
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.00 E-value=1.1e-09 Score=65.89 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.....+|++++|++|+|||||+.+ +..+.|...|.||++ ++...
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~------~~~~~~~~~~~~t~~-~~~~~ 48 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKR------HLTGEFEKKYIPTLG-VEVHP 48 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHH------HHhCCCCCCCCCccc-eEEEE
Confidence 345568999999999999999987 777888888999998 45543
No 51
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.98 E-value=1e-09 Score=63.44 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=32.1
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+.+||+++|+++||||+|+.+ +..+.|...|.||++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~------~~~~~f~~~~~~t~~ 37 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLR------FSEDSFNPSFISTIG 37 (167)
T ss_pred cceEEEEECCCCCCHHHHHHH------HhhCcCCcccccCcc
Confidence 458999999999999999998 888888888888887
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.98 E-value=8.2e-10 Score=63.47 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=32.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
+|++++|+.|||||||+.+ +..+.|...+.||++ +.+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~------~~~~~~~~~~~~t~~--~~~~ 39 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQ------FVQGIFVEKYDPTIE--DSYR 39 (164)
T ss_pred cEEEEECCCCCCHHHHHHH------HHhCCCCcccCCcch--heEE
Confidence 7999999999999999997 777778888888887 5444
No 53
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.97 E-value=1.3e-09 Score=63.50 Aligned_cols=39 Identities=46% Similarity=0.767 Sum_probs=33.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|++|+|||+|+.+ |..+.|..+|.||+. +.|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~------~~~~~~~~~~~~t~~--~~~~~ 39 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVS------YTTNGYPTEYVPTAF--DNFSV 39 (173)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCcee--eeeeE
Confidence 5899999999999999998 888888888999986 66654
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.97 E-value=1.9e-09 Score=62.23 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=32.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEee
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQ 56 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~ 56 (65)
+|++++|+.+||||+|+.+ +..+.|...|.||++ +++
T Consensus 2 ~ki~i~G~~~~GKSsli~~------l~~~~~~~~~~~t~~-~~~ 38 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFR------YADDSFTSAFVSTVG-IDF 38 (165)
T ss_pred eEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCcee-eEE
Confidence 7999999999999999998 888888888889887 443
No 55
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.96 E-value=1.2e-09 Score=63.31 Aligned_cols=34 Identities=47% Similarity=0.586 Sum_probs=30.6
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.|++++|++|||||+|+.+ |..+.|...|.||++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~------~~~~~~~~~~~~t~~ 35 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 35 (175)
T ss_pred cEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 6899999999999999998 888888888888877
No 56
>KOG0081|consensus
Probab=98.96 E-value=3.2e-11 Score=71.90 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=42.2
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
..+++.+|.+.+||+||||||++.+ |..+.|...+++|+| |||-.+.+
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~------YTD~~F~~qFIsTVG-IDFreKrv 51 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQ------YTDGKFNTQFISTVG-IDFREKRV 51 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEE------ecCCcccceeEEEee-cccccceE
Confidence 4567888999999999999999998 999999999999999 88765543
No 57
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.95 E-value=7.8e-10 Score=68.67 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=34.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+|++++|+.|||||||+.+ |..+.|...|.||++ |++...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r------~~~~~f~~~y~pTi~--d~~~k~ 40 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSR------FLGGRFEEQYTPTIE--DFHRKL 40 (247)
T ss_pred CEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCChh--HhEEEE
Confidence 5899999999999999998 888888888999997 666543
No 58
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.95 E-value=1.3e-09 Score=63.27 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=26.6
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccce
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPT 50 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~t 50 (65)
+|++++|++|||||+|+.+ |..+.|...+.|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~------~~~~~f~~~~~~~ 32 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHR------YLTGSYVQLESPE 32 (158)
T ss_pred CEEEEECCCCCcHHHHHHH------HHhCCCCCCCCCC
Confidence 4899999999999999997 7777776666554
No 59
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.95 E-value=1.8e-09 Score=62.44 Aligned_cols=39 Identities=49% Similarity=0.778 Sum_probs=33.0
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|+.++|||+|+.+ |..+.|...+.||++ +.+..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~------~~~~~~~~~~~~t~~--~~~~~ 39 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMS------YANDAFPEEYVPTVF--DHYAV 39 (174)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCcee--eeeEE
Confidence 5899999999999999997 888888888888887 55543
No 60
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.95 E-value=2.5e-09 Score=61.30 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=32.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccc--cccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLS--QLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~--~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|++|+|||+|+.+ +..+ .|..+|.||++ .+.+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~------l~~~~~~~~~~~~~t~~-~~~~~~ 42 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQM------FHSNGAVFPKNYLMTTG-CDFVVK 42 (164)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCcCccCCCceE-EEEEEE
Confidence 4899999999999999997 6543 67888999997 455443
No 61
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.94 E-value=4.1e-09 Score=60.85 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=34.0
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
...+|++++|+++||||+|+.+ +..+.|...+.|+++ ++++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~------~~~~~~~~~~~~~~~-~~~~ 43 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNR------YVTNKFDTQLFHTIG-VEFL 43 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHH------HHcCCCCcCcCCcee-eEEE
Confidence 3568999999999999999997 777888887888887 4443
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.94 E-value=2.7e-09 Score=61.45 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.5
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+.+|++++|++|+|||+|+.+ +..+.|...+.++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~------l~~~~~~~~~~~t~~ 37 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQR------FKSGTFSERQGNTIG 37 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHH------HhhCCCcccCCCccc
Confidence 468999999999999999997 776777777777776
No 63
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.93 E-value=1.9e-09 Score=62.29 Aligned_cols=38 Identities=32% Similarity=0.521 Sum_probs=32.8
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
+||+++|++|||||+|+.+ +..+.|...+.||++ +.|.
T Consensus 2 ~kv~~vG~~~vGKTsli~~------~~~~~f~~~~~~t~~--~~~~ 39 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLR------FVKGTFRESYIPTIE--DTYR 39 (165)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCCCCCCcCCcch--heEE
Confidence 7999999999999999998 888888888888887 5554
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.93 E-value=3.3e-09 Score=61.60 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=33.1
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.+|++++|++|||||+|+.+ +..+.|...+.|+++ .+++.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~------~~~~~~~~~~~~t~~-~~~~~ 41 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYR------FCAGRFPERTEATIG-VDFRE 41 (170)
T ss_pred ceEEEEECCCCCCHHHHHHH------HHhCCCCCcccccee-EEEEE
Confidence 47999999999999999998 777788877888887 44443
No 65
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.92 E-value=3e-09 Score=61.22 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=32.4
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
.+|++++|+++||||+|+.+ +..+.|...+.||++ .++.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~------~~~~~~~~~~~~t~~-~~~~ 40 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLR------FADDTYTESYISTIG-VDFK 40 (166)
T ss_pred eEEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc-eeEE
Confidence 48999999999999999997 777778778888887 4443
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.92 E-value=3.7e-09 Score=60.37 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=32.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
+|++++|++++|||||+.+ +..+.|...+.||++ .+..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~------~~~~~~~~~~~~t~~-~~~~ 38 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQR------FVKGIFTKDYKKTIG-VDFL 38 (162)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCcEE-EEEE
Confidence 4899999999999999997 888888888889987 4543
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.92 E-value=1.6e-09 Score=62.04 Aligned_cols=38 Identities=34% Similarity=0.492 Sum_probs=31.3
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
+|++++|++|||||||+.+ +..+.|...+.||+. +.+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~------~~~~~~~~~~~~t~~--~~~~ 38 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQ------FVQGHFVDDYDPTIE--DSYR 38 (164)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCcCCcccCCchh--hhEE
Confidence 5899999999999999997 777777777777776 5554
No 68
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.91 E-value=3.2e-09 Score=62.27 Aligned_cols=38 Identities=42% Similarity=0.576 Sum_probs=32.9
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.|++++|+.+||||+|+.+ +..+.|...+.||++ +.|.
T Consensus 1 ~ki~vvG~~~vGKTsli~~------l~~~~~~~~~~~t~~--~~~~ 38 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIV------YSQGKFPEEYVPTVF--ENYV 38 (187)
T ss_pred CeEEEECCCCCCHHHHHHH------HHhCcCCCCCCCeee--eeeE
Confidence 4899999999999999998 888888888899987 5544
No 69
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.91 E-value=3.9e-09 Score=62.20 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=30.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+++||||+|+.+ +..+.|...+.||++
T Consensus 1 ~ki~v~G~~~vGKSsli~~------~~~~~~~~~~~~t~~ 34 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKR------FTEDEFSESTKSTIG 34 (188)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCcee
Confidence 5899999999999999998 888888887888887
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.90 E-value=2e-09 Score=64.71 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=31.8
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
+||+++|+++||||||+.+ |..+.|...|.||++ .+.+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~------~~~~~f~~~~~pt~~-~~~~ 38 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQ------FLAQEFPEEYIPTEH-RRLY 38 (198)
T ss_pred CEEEEECCCCCcHHHHHHH------HHcCCCCcccCCccc-cccc
Confidence 5899999999999999998 888888888888886 3443
No 71
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.89 E-value=4.3e-09 Score=62.96 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=32.2
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+.|+|||||+.+ +..+.|...+.||++
T Consensus 6 ~kivv~G~~g~GKTtl~~~------l~~~~~~~~~~~t~~ 39 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNR------LVGDEFPEGYPPTIG 39 (219)
T ss_pred EEEEEEcCCCccHHHHHHH------HhcCcCcccCCCcee
Confidence 8999999999999999998 999999999999987
No 72
>PLN03108 Rab family protein; Provisional
Probab=98.89 E-value=4.3e-09 Score=63.52 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=32.6
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEee
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQ 56 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~ 56 (65)
.+.+||+++|+.++|||+|+.+ +..+.|...+.||++ .++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~------l~~~~~~~~~~~ti~-~~~ 43 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQ------FTDKRFQPVHDLTIG-VEF 43 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCCcc-ceE
Confidence 3569999999999999999997 777777777778876 344
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.87 E-value=4.3e-09 Score=60.07 Aligned_cols=40 Identities=38% Similarity=0.414 Sum_probs=32.7
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
.+|++++|++++|||+|+.+ +..+.+...+.||++ +.+..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~------~~~~~~~~~~~~t~~--~~~~~ 41 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQ------FIQSYFVTDYDPTIE--DSYTK 41 (164)
T ss_pred ceEEEEECCCCCcHHHHHHH------HHhCCCCcccCCCcc--ceEEE
Confidence 47999999999999999997 777777777888877 55443
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.87 E-value=6.6e-09 Score=59.93 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.6
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|++|||||||+.+ +..+.|...+.|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~------~~~~~~~~~~~~~~~ 34 (161)
T cd04124 1 VKIILLGDSAVGKSKLVER------FLMDGYEPQQLSTYA 34 (161)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCcCCcee
Confidence 4899999999999999997 777777777777765
No 75
>KOG0088|consensus
Probab=98.87 E-value=1.3e-09 Score=65.10 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEE--------EeeEEEEEEecC
Q psy15257 5 NEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWA--------IDQYRIYKDTLE 65 (65)
Q Consensus 5 ~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~--------vd~~~~~~~i~~ 65 (65)
........||++++|+..||||||+.| |+.+.|...+.+|+-+ ++.-++.+.|||
T Consensus 6 ~~~g~s~~FK~VLLGEGCVGKtSLVLR------y~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWD 68 (218)
T KOG0088|consen 6 NVDGKSFKFKIVLLGEGCVGKTSLVLR------YVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWD 68 (218)
T ss_pred cccCCceeeEEEEEcCCccchhHHHHH------HHHhhcchhhHHHHHHHHhhcccccccceeeeeeee
Confidence 344567889999999999999999998 8888888777665431 445666777776
No 76
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.87 E-value=6.9e-09 Score=60.12 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=31.2
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+++||||+|+.+ +....+...+.|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~------l~~~~~~~~~~~t~~ 38 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQ------FTDKRFQPVHDLTIG 38 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCccc
Confidence 3458999999999999999997 777777777777776
No 77
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.86 E-value=7.1e-09 Score=59.52 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=30.8
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+++||||+|+.+ +..+.|...+.|+++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 37 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSR------FTRNEFNLDSKSTIG 37 (165)
T ss_pred CceEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 348999999999999999997 777777777778877
No 78
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.86 E-value=2.4e-09 Score=63.44 Aligned_cols=37 Identities=46% Similarity=0.663 Sum_probs=31.3
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
|++++|+.|||||||+.+ |..+.|...+.||++ +.+.
T Consensus 1 ki~ivG~~~vGKTsli~~------l~~~~f~~~~~~t~~--~~~~ 37 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQ------LCLNHFVETYDPTIE--DSYR 37 (190)
T ss_pred CEEEECCCCCCHHHHHHH------HHhCCCCccCCCchH--hhEE
Confidence 689999999999999997 777788888888887 5554
No 79
>KOG0097|consensus
Probab=98.85 E-value=4.9e-09 Score=61.76 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=40.1
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+..+.+.||.+++||-|||||||+++ |....|......||| ++|-+.
T Consensus 5 pynysyifkyiiigdmgvgkscllhq------ftekkfmadcphtig-vefgtr 51 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQ------FTEKKFMADCPHTIG-VEFGTR 51 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHH------HHHHHHhhcCCcccc-eeccee
Confidence 45678899999999999999999998 999889888888888 676543
No 80
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.84 E-value=6.1e-09 Score=60.28 Aligned_cols=39 Identities=33% Similarity=0.469 Sum_probs=33.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|++++|++|+|||+|+.+ +..+.|...+.||++ +.+..
T Consensus 2 ~ki~liG~~~~GKTsli~~------~~~~~~~~~~~~t~~--~~~~~ 40 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQ------FVQNVFIESYDPTIE--DSYRK 40 (168)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCCCCcccCCcch--heEEE
Confidence 7999999999999999998 888888888888887 55543
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.83 E-value=9.6e-09 Score=58.75 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+++||||+|+.+ +..+.+...+.|+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~------l~~~~~~~~~~~~~~ 34 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHR------FVENKFKEDSQHTIG 34 (161)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCcee
Confidence 5899999999999999997 777777777777766
No 82
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.83 E-value=9.1e-09 Score=60.70 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=29.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccc-cccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLT-THVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~-~~~~ti~ 52 (65)
+||+++|+++||||||+.+ +..+.|.. .|.||++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~------~~~~~~~~~~~~~t~~ 35 (193)
T cd04118 1 VKVVMLGKESVGKTSLVER------YVHHRFLVGPYQNTIG 35 (193)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCcCCcCccccee
Confidence 4899999999999999997 77777764 6888887
No 83
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.82 E-value=7.7e-09 Score=63.39 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=34.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE-----EEEEecC
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR-----IYKDTLE 65 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~-----~~~~i~~ 65 (65)
+|++++|+.+||||+|+.+ |..+.|.. +.||++ .+++. ..+.+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r------~~~~~f~~-~~~Tig-~~~~~~~~~~~~l~iwD 50 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHR------YMERRFKD-TVSTVG-GAFYLKQWGPYNISIWD 50 (220)
T ss_pred CEEEEECCCCCcHHHHHHH------HhcCCCCC-CCCccc-eEEEEEEeeEEEEEEEe
Confidence 5899999999999999998 87777765 578887 35443 3355665
No 84
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.81 E-value=6.4e-09 Score=63.37 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccccccc-ccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~ 52 (65)
+||+++|++|||||+|+.+ |..+.|. ..|.|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~------~~~~~~~~~~~~~t~~ 35 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQ------FTSGEYDDHAYDASGD 35 (221)
T ss_pred CEEEEECCCCCcHHHHHHH------HhcCCcCccCcCCCcc
Confidence 5899999999999999997 7666665 56666664
No 85
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.81 E-value=8.2e-09 Score=59.70 Aligned_cols=38 Identities=42% Similarity=0.586 Sum_probs=31.8
Q ss_pred EEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 15 CVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
|+++|++|||||+|+.+ |..+.|...|.|+++ +.|...
T Consensus 1 i~i~G~~~vGKTsli~~------~~~~~~~~~~~~~~~--~~~~~~ 38 (174)
T smart00174 1 LVVVGDGAVGKTCLLIS------YTTNAFPEDYVPTVF--ENYSAD 38 (174)
T ss_pred CEEECCCCCCHHHHHHH------HHhCCCCCCCCCcEE--eeeeEE
Confidence 57899999999999998 888888888888887 666543
No 86
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.79 E-value=7.3e-09 Score=59.85 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=27.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+.+||||||+.+ +..+.|. .+.||++
T Consensus 1 ~kv~~~G~~~~GKTsli~~------l~~~~~~-~~~pt~g 33 (159)
T cd04150 1 MRILMVGLDAAGKTTILYK------LKLGEIV-TTIPTIG 33 (159)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCc-ccCCCCC
Confidence 4899999999999999997 7666666 3678876
No 87
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.77 E-value=6.2e-09 Score=60.48 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=28.1
Q ss_pred EEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 15 CVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
++++|+.|||||+|+.+ |..+.|...+.||++
T Consensus 2 i~ivG~~~vGKTsli~~------~~~~~~~~~~~pt~g 33 (164)
T cd04162 2 ILVLGLDGAGKTSLLHS------LSSERSLESVVPTTG 33 (164)
T ss_pred EEEECCCCCCHHHHHHH------HhcCCCcccccccCC
Confidence 68999999999999998 777777788888876
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.77 E-value=1.9e-08 Score=57.79 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+||+++|++++|||||+.+ +....+...+.++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~------l~~~~~~~~~~~t~~ 34 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQ------YVNKKFSNQYKATIG 34 (172)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCcCcCCccc
Confidence 5899999999999999997 766667776777766
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.77 E-value=2e-08 Score=57.33 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=29.3
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+|++++|++++|||+|+.+ +..+.+...+.|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 35 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLR------FVKNEFSENQESTIG 35 (163)
T ss_pred CeEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCccc
Confidence 37999999999999999997 777777766777776
No 90
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.77 E-value=9.2e-09 Score=60.83 Aligned_cols=35 Identities=31% Similarity=0.555 Sum_probs=28.7
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+++||||+|+.+ +..+.|.. +.||++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~------~~~~~~~~-~~~T~~ 50 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYK------LKLGEVVT-TIPTIG 50 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHH------HhcCCccc-cCCccc
Confidence 358999999999999999997 66666654 678877
No 91
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.76 E-value=5.4e-09 Score=60.19 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=26.3
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
|++++|++|||||+|+.+ +..+.|...|.|+..
T Consensus 1 ki~vvG~~~~GKtsli~~------~~~~~~~~~~~~t~~ 33 (165)
T cd04146 1 KIAVLGASGVGKSALVVR------FLTKRFIGEYDPNLE 33 (165)
T ss_pred CEEEECCCCCcHHHHHHH------HHhCccccccCCChH
Confidence 689999999999999997 666666666666653
No 92
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.76 E-value=1.4e-08 Score=60.20 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=27.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccccccc-ccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~ 52 (65)
+|++++|+.+||||||+.+ +..+.|. ..+.||++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~------~~~~~~~~~~~~~t~~ 35 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVR------FKDGAFLNGNFIATVG 35 (191)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCccCcCCccc
Confidence 5899999999999999997 6666664 35666665
No 93
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.76 E-value=1.4e-08 Score=59.47 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=28.9
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+.+||||+|+.+ +..+.|. .+.||++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~------~~~~~~~-~~~~t~~ 46 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYK------LKLGESV-TTIPTIG 46 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHH------HhcCCCC-CcCCccc
Confidence 458999999999999999997 7666664 4678887
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.75 E-value=1.4e-08 Score=57.83 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=28.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|++|+|||||+.+ +..+.|...+.|+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~------l~~~~~~~~~~~~~~ 34 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQ------FMYDEFVEDYEPTKA 34 (164)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCccccCCcch
Confidence 5899999999999999997 777777777777765
No 95
>KOG4252|consensus
Probab=98.74 E-value=2.3e-09 Score=65.04 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEec
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDTL 64 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i~ 64 (65)
.....+|++++|..+|||+++++| |+.+-|...|.-||| +|+...+..|+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqr------yCkgifTkdykktIg-vdflerqi~v~ 65 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQR------YCKGIFTKDYKKTIG-VDFLERQIKVL 65 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHH------Hhccccccccccccc-hhhhhHHHHhh
Confidence 446679999999999999999998 999999999999999 88877665543
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.74 E-value=2.1e-08 Score=59.25 Aligned_cols=38 Identities=39% Similarity=0.620 Sum_probs=30.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.|++++|++|+|||+|+.+ +..+.|...+.||++ +.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~------l~~~~~~~~~~~t~~--~~~~ 39 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSV------FTLGEFPEEYHPTVF--ENYV 39 (187)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCCCCcccCCccc--ceEE
Confidence 5999999999999999997 766677777777776 5444
No 97
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.74 E-value=2.7e-08 Score=57.07 Aligned_cols=40 Identities=48% Similarity=0.667 Sum_probs=31.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+|++++|+.|+|||+|+.+ +..+.+...+.|++. +.+...
T Consensus 1 iki~i~G~~~~GKSsli~~------l~~~~~~~~~~~~~~--~~~~~~ 40 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLIS------YTTGKFPTEYVPTVF--DNYSAT 40 (171)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCcee--eeeEEE
Confidence 5899999999999999997 777777666777776 544433
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.73 E-value=5.2e-08 Score=55.99 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=31.8
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
...+|++++|++|||||+|+.+ +..+.+...+.++++ .++.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~-~~~~ 45 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRR------FTQGLFPPGQGATIG-VDFM 45 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCcee-eEEE
Confidence 3568999999999999999997 666666666777776 3443
No 99
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.73 E-value=3.1e-08 Score=56.45 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=27.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|++++|||+|+.+ +....+...+.|+.+
T Consensus 1 ~ki~liG~~~~GKSsli~~------l~~~~~~~~~~~~~~ 34 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITR------FMYDTFDNQYQATIG 34 (161)
T ss_pred CEEEEECCCCCCHHHHHHH------HHcCCCCccCCCcee
Confidence 4899999999999999997 666666666667665
No 100
>PLN03118 Rab family protein; Provisional
Probab=98.73 E-value=3.9e-08 Score=59.10 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=30.6
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+......+|++++|++|||||+|+.+ +..+.+ ..+.|+++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~------l~~~~~-~~~~~t~~ 47 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVS------FISSSV-EDLAPTIG 47 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHH------HHhCCC-CCcCCCce
Confidence 34556679999999999999999997 655554 34567766
No 101
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.72 E-value=4e-08 Score=55.96 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=28.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|++++|||+|+.+ +....+...+.++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~------l~~~~~~~~~~~~~~ 34 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSR------FTDGKFSEQYKSTIG 34 (164)
T ss_pred CEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCcee
Confidence 5899999999999999997 766666766777776
No 102
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.71 E-value=1.9e-08 Score=56.61 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=27.5
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
|++++|+++||||||+.+ +....+ .+.+|++ +++..
T Consensus 2 kv~liG~~~vGKSsL~~~------l~~~~~--~~~~t~~-~~~~~ 37 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQA------LQGEEI--LYKKTQA-VEYND 37 (142)
T ss_pred eEEEECCCCCCHHHHHHH------HcCCcc--cccccee-EEEcC
Confidence 899999999999999997 655544 3567776 45543
No 103
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.71 E-value=9.4e-09 Score=56.30 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=27.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccccccccccc-ceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHV-PTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~-~ti~ 52 (65)
+|++++|++|||||+|+.| |..+.|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~------~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSAR------FVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHH------HhcCCccccCceehhh
Confidence 5899999999999999998 87777765554 5543
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.71 E-value=1.4e-08 Score=60.60 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=28.1
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
||+++|+.|||||+|+.+ +..+.|...+.+|+.
T Consensus 1 kv~vvG~~~vGKTsll~~------~~~~~~~~~~~~t~~ 33 (198)
T cd04147 1 RLVFMGAAGVGKTALIQR------FLYDTFEPKYRRTVE 33 (198)
T ss_pred CEEEECCCCCCHHHHHHH------HHhCCCCccCCCchh
Confidence 689999999999999997 777777777777765
No 105
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.70 E-value=2.5e-08 Score=58.20 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=28.1
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+++||||||+.+ +..+.+. .+.||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~------l~~~~~~-~~~~t~g 42 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYK------LKLGQSV-TTIPTVG 42 (168)
T ss_pred CccEEEEECcCCCCHHHHHHH------HccCCCc-cccCCcc
Confidence 458999999999999999997 6655554 3567776
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.68 E-value=2.8e-08 Score=58.81 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=29.0
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+++||||+|+.+ +..+.|. .+.||++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~------l~~~~~~-~~~pt~g 50 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYK------LKLGEIV-TTIPTIG 50 (181)
T ss_pred CccEEEEECCCCCCHHHHHHH------HccCCCc-cccCCcc
Confidence 358999999999999999997 7666665 4678887
No 107
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.65 E-value=4.3e-08 Score=57.10 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=28.3
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.|++++|++|||||+|+.+ +....+...+.||+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~------~~~~~~~~~~~~t~~ 35 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQ------FVEGHFVESYYPTIE 35 (180)
T ss_pred eEEEEECCCCCCHHHHHHH------HHhCCCccccCcchh
Confidence 6899999999999999997 776777666777664
No 108
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.63 E-value=1e-07 Score=53.39 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=28.3
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+.++|||||+.+ +....+...+.+|.+
T Consensus 1 ~~i~~~G~~~~GKStl~~~------l~~~~~~~~~~~t~~ 34 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLR------FVDGKFDENYKSTIG 34 (159)
T ss_pred CeEEEECCCCCCHHHHHHH------HHhCcCCCccCCcee
Confidence 4899999999999999997 777777766667766
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.63 E-value=5.2e-08 Score=56.62 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=26.3
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
|++++|+.+||||+|+.+ +..+.+.. +.||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~------l~~~~~~~-~~~T~~ 32 (169)
T cd04158 1 RVVTLGLDGAGKTTILFK------LKQDEFMQ-PIPTIG 32 (169)
T ss_pred CEEEECCCCCCHHHHHHH------HhcCCCCC-cCCcCc
Confidence 689999999999999997 66666654 678876
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.62 E-value=5.9e-08 Score=57.24 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=27.1
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+|++++|++|||||||+.+ +..+.|... .||++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~------~~~~~~~~~-~~t~~ 36 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYR------LKFNEFVNT-VPTKG 36 (183)
T ss_pred ceEEEEECCCCCCHHHHHHH------HhcCCcCCc-CCccc
Confidence 58999999999999999997 666666543 56665
No 111
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.62 E-value=8.1e-08 Score=54.80 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=28.2
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+.++|||+|+.+ +....+...+.|+++
T Consensus 1 ~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 34 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLR------FTDDTFDPDLAATIG 34 (161)
T ss_pred CEEEEECCCCCCHHHHHHH------HHcCCCCcccCCccc
Confidence 5899999999999999997 666666666677776
No 112
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.61 E-value=5.4e-08 Score=54.59 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=27.7
Q ss_pred EEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 15 CVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+.++|++|+|||||+.+ +....|...+.||++
T Consensus 2 i~i~G~~~~GKssl~~~------l~~~~~~~~~~~t~~ 33 (159)
T cd04159 2 ITLVGLQNSGKTTLVNV------IAGGQFSEDTIPTVG 33 (159)
T ss_pred EEEEcCCCCCHHHHHHH------HccCCCCcCccCCCC
Confidence 68999999999999997 777777777888876
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.61 E-value=6.2e-08 Score=56.00 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=22.9
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccc
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTH 47 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~ 47 (65)
|++++|+++||||+|+.+ +..+.|...+
T Consensus 2 kv~ivG~~~vGKTsl~~~------l~~~~~~~~~ 29 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMS------LVSEEFPENV 29 (166)
T ss_pred EEEEECCCCCCHHHHHHH------HHhCcCCccC
Confidence 899999999999999997 6666665443
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.58 E-value=7.4e-08 Score=54.85 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=26.6
Q ss_pred EEEEECCCCChHHHHHhHhhhcccccccc-ccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQ-LLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~-~~~~~~~ti~ 52 (65)
+|+++|+++||||+|+.+ +.... +...+.||++
T Consensus 1 ~i~~vG~~~~GKTsl~~~------l~~~~~~~~~~~~t~g 34 (162)
T cd04157 1 NILVVGLDNSGKTTIINQ------LKPENAQSQIIVPTVG 34 (162)
T ss_pred CEEEECCCCCCHHHHHHH------HcccCCCcceecCccc
Confidence 478999999999999997 66654 4566778876
No 115
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.57 E-value=9.2e-08 Score=57.81 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=29.9
Q ss_pred ECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 18 VGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 18 lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
+|+.|||||||+.| |..+.|...|.||++ +++++.
T Consensus 1 vG~~~vGKTsLi~r------~~~~~f~~~~~~Tig-~~~~~~ 35 (200)
T smart00176 1 VGDGGTGKTTFVKR------HLTGEFEKKYVATLG-VEVHPL 35 (200)
T ss_pred CCCCCCCHHHHHHH------HhcCCCCCCCCCcee-EEEEEE
Confidence 59999999999998 888889888999998 566544
No 116
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.56 E-value=8.8e-08 Score=54.16 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=25.4
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
|++++|+.++|||+|+.+ +....+...+.|+..
T Consensus 1 ki~i~G~~~~GKTsli~~------l~~~~~~~~~~~~~~ 33 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQ------FVKGTFVEEYDPTIE 33 (160)
T ss_pred CEEEECCCCCCHHHHHHH------HHhCCCCcCcCCChh
Confidence 689999999999999997 555556555655554
No 117
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.55 E-value=1.9e-07 Score=52.84 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=26.3
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|++|+|||+|+.+ +..+.+...+.+++.
T Consensus 1 ~ki~i~G~~~~GKStli~~------l~~~~~~~~~~~~~~ 34 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLR------YVENKFNEKHESTTQ 34 (162)
T ss_pred CEEEEECCCCCCHHHHHHH------HHhCCCCCCcCCccc
Confidence 5899999999999999997 666656555555553
No 118
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.51 E-value=2.6e-07 Score=50.59 Aligned_cols=18 Identities=61% Similarity=0.828 Sum_probs=17.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
||+++|+.|+|||+|+.+
T Consensus 1 kI~V~G~~g~GKTsLi~~ 18 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRR 18 (119)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHH
Confidence 799999999999999996
No 119
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.50 E-value=2.1e-07 Score=54.06 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=27.7
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+|++++|++++|||+|+.+ +....+ ..+.||++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~------l~~~~~-~~~~~t~g 47 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKK------LLGEDI-DTISPTLG 47 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHH------HccCCC-CCcCCccc
Confidence 34568999999999999999997 554433 35667765
No 120
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.49 E-value=1.1e-07 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|++|+|||+|+.+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~ 33 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQ 33 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHH
Confidence 3468999999999999999986
No 121
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.48 E-value=1.6e-07 Score=54.61 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=26.3
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+++++|+++||||+|+.+ +... +...+.||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~------l~~~-~~~~~~~t~g 32 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSA------LQGE-IPKKVAPTVG 32 (167)
T ss_pred CEEEECCCCCCHHHHHHH------HhCC-CCccccCccc
Confidence 478999999999999986 5544 6677888887
No 122
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.48 E-value=4.7e-07 Score=50.23 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=26.8
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+||+++|++|+|||+|+.+ +....+...+.++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~------l~~~~~~~~~~~~~~ 35 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNR------LLGNKFITEYKPGTT 35 (161)
T ss_pred eEEEEECCCCCCHHHHHHH------HhCCCCcCcCCCCce
Confidence 6999999999999999997 555556555655554
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.46 E-value=2.2e-07 Score=53.15 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=24.3
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
|++++|+.++|||+|+.+ +..+.+.. +.||++
T Consensus 1 kv~lvG~~~~GKTsl~~~------l~~~~~~~-~~~t~~ 32 (158)
T cd04151 1 RILILGLDNAGKTTILYR------LQLGEVVT-TIPTIG 32 (158)
T ss_pred CEEEECCCCCCHHHHHHH------HccCCCcC-cCCccC
Confidence 689999999999999997 55444443 456665
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.43 E-value=4.8e-07 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|++++|++|+||||++.+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~ 36 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHM 36 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHH
Confidence 3458999999999999999996
No 125
>PRK04213 GTP-binding protein; Provisional
Probab=98.39 E-value=1.1e-06 Score=52.07 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=25.1
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccc
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVP 49 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ 49 (65)
...++++++|+++||||||+.+ +....+...+.|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~------l~~~~~~~~~~~ 40 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRE------LTGKKVRVGKRP 40 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHH------HhCCCCccCCCC
Confidence 3457999999999999999996 554444443444
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.38 E-value=5.7e-07 Score=51.55 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=24.4
Q ss_pred EEEEECCCCChHHHHHhHhhhcccc-ccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQV-SLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~-~~~~~~~~~~~ti~ 52 (65)
+++++|+.|+|||+|+.+ ++.... ....+...+.||++
T Consensus 1 ~i~~vG~~~~GKstLi~~-l~~~~~~~~~~~~~~~~~t~~ 39 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQ-LKTLFSKYKGLPPSKITPTVG 39 (167)
T ss_pred CEEEEecCCCCHHHHHHH-HhhhcccccCCcccccCCccc
Confidence 578999999999999986 222111 11233445667765
No 127
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.38 E-value=4.9e-07 Score=51.49 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=24.6
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+++++|++|||||+|+.+ +..+.+.. +.||++
T Consensus 1 ~i~i~G~~~~GKTsl~~~------~~~~~~~~-~~~t~~ 32 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYK------LKHAELVT-TIPTVG 32 (160)
T ss_pred CEEEEcCCCCCHHHHHHH------HhcCCccc-ccCccC
Confidence 588999999999999997 66665543 356664
No 128
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.36 E-value=7.3e-07 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+...+++++|++|+|||||+.+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~ 43 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINA 43 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHH
Confidence 445678999999999999999996
No 129
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.34 E-value=6.4e-07 Score=52.29 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.4
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+|++++|++++|||+|+.+ +..+.+.. +.||++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~------l~~~~~~~-~~~t~~ 48 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQ------FLLGEVVH-TSPTIG 48 (174)
T ss_pred ccEEEEECCCCCCHHHHHHH------HccCCCCC-cCCccc
Confidence 57999999999999999997 66555554 467776
No 130
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.33 E-value=4.2e-07 Score=53.37 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=26.0
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|+|||||+.+ +..+.+. .+.||++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~------l~~~~~~-~~~~T~~ 52 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHM------LKDDRLA-QHVPTLH 52 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHH------HhcCCCc-ccCCccC
Confidence 3468999999999999999996 5544442 3445543
No 131
>KOG0096|consensus
Probab=98.31 E-value=8.3e-07 Score=54.11 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=37.8
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
-..+|++++||.|.|||+...| ...++|...|.||+| ++.+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr------~ltgeFe~~y~at~G-v~~~p 49 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKR------HLTGEFEKTYPATLG-VEVHP 49 (216)
T ss_pred cceEEEEEecCCcccccchhhh------hhcccceecccCcce-eEEee
Confidence 4679999999999999999998 999999999999999 66554
No 132
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.30 E-value=9.3e-07 Score=50.32 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
|++++|+.|+|||||+.+ +..+. ...+.||++
T Consensus 1 ki~iiG~~~~GKssli~~------~~~~~-~~~~~~t~~ 32 (158)
T cd00878 1 RILILGLDGAGKTTILYK------LKLGE-VVTTIPTIG 32 (158)
T ss_pred CEEEEcCCCCCHHHHHHH------HhcCC-CCCCCCCcC
Confidence 689999999999999996 54443 233455555
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.22 E-value=2.8e-06 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|++|||||||+.+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~ 60 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNA 60 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357999999999999999985
No 134
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.21 E-value=2.6e-06 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....+++++|++|+|||||+.+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~ 37 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINA 37 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHH
Confidence 35678999999999999999996
No 135
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.19 E-value=3.8e-06 Score=50.66 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=24.2
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccccccce
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPT 50 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~t 50 (65)
.++++|++++|||+|+.+ +..+.+...+.++
T Consensus 2 ~vll~G~~~sGKTsL~~~------l~~~~~~~t~~s~ 32 (203)
T cd04105 2 TVLLLGPSDSGKTALFTK------LTTGKYRSTVTSI 32 (203)
T ss_pred eEEEEcCCCCCHHHHHHH------HhcCCCCCccCcE
Confidence 589999999999999997 6666665555444
No 136
>KOG0083|consensus
Probab=98.14 E-value=3.6e-07 Score=53.47 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=28.1
Q ss_pred EECCCCChHHHHHhHhhhcccccccccc-ccccceEEEEee
Q psy15257 17 VVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVWAIDQ 56 (65)
Q Consensus 17 ~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~~vd~ 56 (65)
++||+++|||||+.| |..+.|. .++.+|+| ||+
T Consensus 2 llgds~~gktcllir------~kdgafl~~~fistvg-id~ 35 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIR------FKDGAFLAGNFISTVG-IDF 35 (192)
T ss_pred ccccCccCceEEEEE------eccCceecCceeeeee-ecc
Confidence 689999999999998 8888876 57889998 554
No 137
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.13 E-value=3.2e-06 Score=49.78 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=27.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....||+++|..++|||+++.+ +..+.+.. ..||+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~------l~~~~~~~-~~pT~g 47 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNR------LKNGEISE-TIPTIG 47 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHH------HHSSSEEE-EEEESS
T ss_pred CcEEEEEEECCCccchHHHHHH------hhhccccc-cCcccc
Confidence 5678999999999999999996 55444333 667765
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.11 E-value=9.2e-06 Score=46.53 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=17.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++++|||||+.+
T Consensus 2 ~i~~~G~~~~GKssli~~ 19 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNK 19 (168)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 789999999999999996
No 139
>KOG1673|consensus
Probab=98.08 E-value=1.9e-06 Score=51.52 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEEe
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~i 63 (65)
.....+|+-++||..+|||+++.+ |..+++..++.-+.| +.+..+++.|
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvk------YV~~~~de~~~q~~G-vN~mdkt~~i 64 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVK------YVQNEYDEEYTQTLG-VNFMDKTVSI 64 (205)
T ss_pred ccceEEEEEeecccccCceeeehh------hhcchhHHHHHHHhC-ccceeeEEEe
Confidence 445679999999999999999999 999988888888887 6666655543
No 140
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.08 E-value=1.2e-05 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|++|+|||||+.+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~ 23 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINT 23 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHH
Confidence 358999999999999999996
No 141
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.03 E-value=6.5e-06 Score=46.41 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++|+|||||+.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~ 18 (170)
T cd01876 1 EIAFAGRSNVGKSSLINA 18 (170)
T ss_pred CEEEEcCCCCCHHHHHHH
Confidence 478999999999999996
No 142
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.02 E-value=9.5e-06 Score=46.47 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|+.++|||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~ 19 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSA 19 (170)
T ss_pred CeEEECCCCCCHHHHHHH
Confidence 578999999999999985
No 143
>KOG4423|consensus
Probab=97.96 E-value=3.8e-07 Score=55.66 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=36.6
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEee
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQ 56 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~ 56 (65)
....+|+.++|+.|+|||+++.| |....|+.+|..||| +|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~r------yv~~nfs~~yRAtIg-vdf 62 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKR------YVHQNFSYHYRATIG-VDF 62 (229)
T ss_pred hhhhhhhheeeeccccchhHHHH------HHHHHHHHHHHHHHh-HHH
Confidence 35679999999999999999998 999999999999999 554
No 144
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.94 E-value=7e-07 Score=59.21 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.7
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.-.+.++||+|||||+.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAK 222 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAK 222 (407)
T ss_pred CcEEEEECCCCCcHHHHHHH
Confidence 45788999999999999987
No 145
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.88 E-value=1.3e-05 Score=47.98 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+|++++|++|+|||||+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~ 20 (197)
T cd04104 2 LNIAVTGESGAGKSSFINA 20 (197)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 6899999999999999986
No 146
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.85 E-value=4.9e-05 Score=46.87 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++++|||+|+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~ 19 (233)
T cd01896 2 RVALVGFPSVGKSTLLSK 19 (233)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999985
No 147
>KOG1707|consensus
Probab=97.82 E-value=2.1e-05 Score=54.28 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=24.5
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhcccccccccccc
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTT 46 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~ 46 (65)
....+|+++||.|||||||+.. ....+|.++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImS------L~~eef~~~ 37 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMS------LLEEEFVDA 37 (625)
T ss_pred ccceEEEEECCCCccHHHHHHH------HHhhhcccc
Confidence 4568999999999999999997 555555543
No 148
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.81 E-value=4.3e-05 Score=43.28 Aligned_cols=18 Identities=39% Similarity=0.324 Sum_probs=16.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|+++||||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~ 19 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKA 19 (164)
T ss_pred EEEEEecCCCCHHHHHHH
Confidence 578999999999999996
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.80 E-value=3.7e-05 Score=45.57 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|+.++|||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~ 21 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDA 21 (194)
T ss_pred cEEEEEecCCCCHHHHHHH
Confidence 4899999999999999997
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.76 E-value=7.9e-05 Score=41.74 Aligned_cols=19 Identities=47% Similarity=0.789 Sum_probs=17.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
++++++|++|+|||+++.+
T Consensus 2 ~~i~l~G~~~~GKstli~~ 20 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNA 20 (157)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5899999999999999985
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.72 E-value=7.2e-05 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++++|||||+.+
T Consensus 2 ~i~iiG~~~~GKtsli~~ 19 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDK 19 (168)
T ss_pred EEEEEecCCCCHHHHHHH
Confidence 488999999999999996
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.71 E-value=9.6e-05 Score=49.53 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|+++||||||+.+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~ 222 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNA 222 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHH
Confidence 457999999999999999996
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.69 E-value=9.6e-05 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|.+++|||||+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~ 208 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNA 208 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 347999999999999999996
No 154
>PRK15494 era GTPase Era; Provisional
Probab=97.69 E-value=9.9e-05 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++++|+++||||||+.+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~ 71 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNR 71 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHH
Confidence 456999999999999999996
No 155
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.67 E-value=2.2e-05 Score=47.48 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|||||+.+.+
T Consensus 2 ~vi~lvGptGvGKTTt~aK 20 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAK 20 (196)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHH
Confidence 3678999999999999987
No 156
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.66 E-value=0.00016 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.9
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++|+++|.+||||||++.+
T Consensus 36 ~~~~rIllvGktGVGKSSliNs 57 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNS 57 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999986
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.65 E-value=4.4e-05 Score=43.74 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=13.6
Q ss_pred EECCCCChHHHHHhH
Q psy15257 17 VVGDTAVGKTRLICA 31 (65)
Q Consensus 17 ~lG~~gvGKTsl~~~ 31 (65)
++|++++|||||+.+
T Consensus 1 iiG~~~~GKStll~~ 15 (176)
T cd01881 1 LVGLPNVGKSTLLNA 15 (176)
T ss_pred CCCCCCCcHHHHHHH
Confidence 479999999999985
No 158
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.64 E-value=0.00014 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++|+++|.+||||||++.+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNa 50 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINS 50 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHH
Confidence 4568999999999999999986
No 159
>PRK11058 GTPase HflX; Provisional
Probab=97.61 E-value=0.00012 Score=48.93 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=17.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|.+++|||||+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~ 216 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNR 216 (426)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5899999999999999996
No 160
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.60 E-value=0.00013 Score=42.59 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.|++++|++|+|||+|+.+
T Consensus 2 krimliG~~g~GKTTL~q~ 20 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQA 20 (143)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4899999999999999986
No 161
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.59 E-value=7.8e-05 Score=41.78 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=18.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++++|+.|+||||++.+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~ 22 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNA 22 (168)
T ss_pred eeEEEEECCCCCCHHHHHHH
Confidence 57899999999999999986
No 162
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.56 E-value=5.6e-05 Score=42.63 Aligned_cols=15 Identities=53% Similarity=0.775 Sum_probs=13.7
Q ss_pred EECCCCChHHHHHhH
Q psy15257 17 VVGDTAVGKTRLICA 31 (65)
Q Consensus 17 ~lG~~gvGKTsl~~~ 31 (65)
++|+++||||||+.+
T Consensus 1 l~G~~~~GKssl~~~ 15 (158)
T cd01879 1 LVGNPNVGKTTLFNA 15 (158)
T ss_pred CCCCCCCCHHHHHHH
Confidence 479999999999996
No 163
>KOG3883|consensus
Probab=97.52 E-value=0.00018 Score=43.02 Aligned_cols=46 Identities=28% Similarity=0.253 Sum_probs=35.5
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~~ 62 (65)
...|++++|--+||||+++.+.++. +.....++.|||. |.|...++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg----~~~~~~e~~pTiE--DiY~~sve 53 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYG----NHVPGTELHPTIE--DIYVASVE 53 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhc----cCCCCCccccchh--hheeEeee
Confidence 4579999999999999999873322 3344567889999 88887765
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.48 E-value=9.9e-05 Score=41.82 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.++++++|+.|+||||++.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~ 21 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNA 21 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 36899999999999999986
No 165
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.47 E-value=0.00032 Score=45.41 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=31.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccc-ccccccccceEEEEeeEE-EEEEecC
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSL-SQLLTTHVPTVWAIDQYR-IYKDTLE 65 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~-~~~~~~~~~ti~~vd~~~-~~~~i~~ 65 (65)
..|.++|.+++|||||+.+ ++...... +...++..|+++.++.-. ..+.++|
T Consensus 158 adV~lvG~pnaGKSTLl~~-lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D 211 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISA-VSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIAD 211 (329)
T ss_pred ccEEEEcCCCCCHHHHHHH-HhcCCccccCCCCCccCCEEEEEEeCCceEEEEEe
Confidence 4578999999999999995 33322111 111234678888443322 4555655
No 166
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.46 E-value=0.00011 Score=43.55 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|||||||+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~ 54 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINA 54 (161)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999999985
No 167
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.0001 Score=48.16 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++||||||||+++.-
T Consensus 32 ~vllGPSGcGKSTlLr~ 48 (338)
T COG3839 32 VVLLGPSGCGKSTLLRM 48 (338)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999999974
No 168
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.42 E-value=0.00024 Score=42.04 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=17.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
++++++|+.++|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~ 19 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKA 19 (192)
T ss_pred CeEEEEecCCCCHHHHHHH
Confidence 4789999999999999986
No 169
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.41 E-value=0.00027 Score=41.63 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccccccc
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLL 44 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~ 44 (65)
.+|.++|.++||||+|+.+ +++.......++
T Consensus 1 i~ialvG~PNvGKStLfN~-Ltg~~~~v~n~p 31 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNA-LTGAKQKVGNWP 31 (156)
T ss_dssp -EEEEEESTTSSHHHHHHH-HHTTSEEEEEST
T ss_pred CEEEEECCCCCCHHHHHHH-HHCCCceecCCC
Confidence 4789999999999999995 444333333333
No 170
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.40 E-value=0.00013 Score=39.89 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=16.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|+++|.+++|||||+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~ 18 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINA 18 (116)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 588999999999999985
No 171
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.40 E-value=0.00027 Score=45.68 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEECCCCChHHHHHhHhhhcccccccccc-ccccceEE
Q psy15257 15 CVVVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVW 52 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~ 52 (65)
+.++|.++||||||+.+ +++.......|+ ..+.|++|
T Consensus 1 i~ivG~pnvGKStLfn~-lt~~~~~~~~~pftT~~p~~g 38 (318)
T cd01899 1 IGLVGKPNAGKSTFFNA-ATLADVEIANYPFTTIDPNVG 38 (318)
T ss_pred CEEECCCCCCHHHHHHH-HhCCCCcccCCCCccccceeE
Confidence 46899999999999995 444433222222 45678887
No 172
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00013 Score=45.98 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|+||||||+|+.-
T Consensus 31 fvsilGpSGcGKSTLLri 48 (248)
T COG1116 31 FVAILGPSGCGKSTLLRL 48 (248)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999999974
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=97.38 E-value=0.00017 Score=42.47 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|+++|++|+|||+++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~ 20 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQ 20 (167)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3799999999999999985
No 174
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.36 E-value=0.00026 Score=39.69 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=14.4
Q ss_pred EEECCCCChHHHHHhH
Q psy15257 16 VVVGDTAVGKTRLICA 31 (65)
Q Consensus 16 v~lG~~gvGKTsl~~~ 31 (65)
+++|++|+|||||+.+
T Consensus 1 ~l~G~~~~GKssl~~~ 16 (157)
T cd01894 1 AIVGRPNVGKSTLFNR 16 (157)
T ss_pred CccCCCCCCHHHHHHH
Confidence 3689999999999996
No 175
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.34 E-value=0.00057 Score=45.38 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=26.2
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccccccc-ccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~ 52 (65)
+|+.++|.++||||+|+.+ +++..+....++ .+..|++|
T Consensus 2 ~kigivG~pnvGKSTlfn~-Lt~~~~~~~~y~f~t~~p~~g 41 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNA-ATLADVEIANYPFTTIDPNVG 41 (396)
T ss_pred cEEEEECCCCCCHHHHHHH-HhCCcccccCCCCcceeeeee
Confidence 5899999999999999995 444333222222 23367777
No 176
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.33 E-value=0.00017 Score=39.19 Aligned_cols=15 Identities=60% Similarity=0.888 Sum_probs=13.6
Q ss_pred EECCCCChHHHHHhH
Q psy15257 17 VVGDTAVGKTRLICA 31 (65)
Q Consensus 17 ~lG~~gvGKTsl~~~ 31 (65)
++|+.|+|||+|+.+
T Consensus 1 iiG~~~~GKStl~~~ 15 (157)
T cd00882 1 VVGDSGVGKTSLLNR 15 (157)
T ss_pred CCCcCCCcHHHHHHH
Confidence 479999999999986
No 177
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.33 E-value=0.00018 Score=39.48 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|++.|++|+|||+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999999985
No 178
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.33 E-value=0.00016 Score=44.45 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
|++++|+.++|||||+.+
T Consensus 1 ~v~~~G~~~~GKttl~~~ 18 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGV 18 (224)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 588999999999999996
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.31 E-value=0.00046 Score=45.54 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
++|+++|+++||||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~ 20 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNR 20 (435)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5899999999999999996
No 180
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00023 Score=42.01 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=16.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++|+|||+++..
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 789999999999999985
No 181
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.30 E-value=0.00041 Score=46.63 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.3
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...|++++|+++||||||+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~ 230 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNK 230 (472)
T ss_pred cceEEEEECCCCCCHHHHHHH
Confidence 458999999999999999996
No 182
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.26 E-value=0.00061 Score=42.61 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|+++||||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~ 19 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQ 19 (270)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999996
No 183
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.26 E-value=0.00022 Score=41.14 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|+++|+.|+|||+|+.+
T Consensus 1 ~v~v~G~~~~GKStlln~ 18 (189)
T cd00881 1 NVGIAGHVDHGKTTLTER 18 (189)
T ss_pred CEEEEeCCCCCHHHHHHH
Confidence 478999999999999986
No 184
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.25 E-value=0.00022 Score=42.96 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
--++++|++|.|||+|..+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp -EEEEE-STTSSHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 3588999999999999996
No 185
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.25 E-value=0.00058 Score=45.81 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|++++|||||+.+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~ 234 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNA 234 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 347999999999999999996
No 186
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00023 Score=42.60 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=16.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++|+|||+++.+
T Consensus 2 riiilG~pGaGK~T~A~~ 19 (178)
T COG0563 2 RILILGPPGAGKSTLAKK 19 (178)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 789999999999999986
No 187
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.23 E-value=0.00026 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..|+++++|++|+|||+++..
T Consensus 3 ~~fnImVvG~sG~GKTTFInt 23 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINT 23 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHH
Confidence 368999999999999999985
No 188
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.22 E-value=0.0008 Score=39.38 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.8
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|.++||||+++.+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~ 134 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINR 134 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 447899999999999999985
No 189
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.20 E-value=0.00035 Score=41.46 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~ 21 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAA 21 (186)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999985
No 190
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.20 E-value=0.00022 Score=41.18 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=16.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|+.++|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~ 19 (179)
T cd01890 2 NFSIIAHIDHGKSTLADR 19 (179)
T ss_pred cEEEEeecCCCHHHHHHH
Confidence 688999999999999996
No 191
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00027 Score=46.42 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=15.0
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++||||||||+++.-
T Consensus 34 ~~lLGPSGcGKTTlLR~ 50 (352)
T COG3842 34 VTLLGPSGCGKTTLLRM 50 (352)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56889999999999974
No 192
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.19 E-value=0.00074 Score=40.98 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=17.3
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
++|+++|.+|+|||++...
T Consensus 1 l~IlllG~tGsGKSs~~N~ 19 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNS 19 (212)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999999985
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.00041 Score=37.45 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3678999999999999985
No 194
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.16 E-value=0.00042 Score=39.38 Aligned_cols=18 Identities=44% Similarity=0.512 Sum_probs=16.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|.++||||+++.+
T Consensus 85 ~~~~~G~~~vGKstlin~ 102 (141)
T cd01857 85 TIGLVGYPNVGKSSLINA 102 (141)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 899999999999999985
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.15 E-value=0.00043 Score=40.13 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=17.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|+++|++++|||+|+.+
T Consensus 3 ~i~~iG~~~~GKstl~~~ 20 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNA 20 (158)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 799999999999999985
No 196
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.15 E-value=0.001 Score=45.54 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=30.0
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccc-cccccccccceEEEEeeEEEEEEecC
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVS-LSQLLTTHVPTVWAIDQYRIYKDTLE 65 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~-~~~~~~~~~~ti~~vd~~~~~~~i~~ 65 (65)
.+|.++|.+++|||||+.+ ++..... .+...++..|.++.++.-...+.++|
T Consensus 160 adV~LVG~PNAGKSTLln~-Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laD 212 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISA-LSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVAD 212 (500)
T ss_pred ceEEEEEcCCCCHHHHHHH-HhcCCccccccCcccccceEEEEEECCeEEEEEE
Confidence 5689999999999999985 3322111 11111233466664444344555554
No 197
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.13 E-value=0.00078 Score=44.28 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|+++||||||+.+
T Consensus 1 ~i~ivG~~nvGKStL~n~ 18 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNR 18 (429)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 588999999999999996
No 198
>KOG0070|consensus
Probab=97.13 E-value=0.00034 Score=42.23 Aligned_cols=36 Identities=33% Similarity=0.575 Sum_probs=30.9
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+|+++|=-+.|||+++.+ +..+++... .||||
T Consensus 15 ~~e~~IlmlGLD~AGKTTILyk------Lk~~E~vtt-vPTiG 50 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYK------LKLGEIVTT-VPTIG 50 (181)
T ss_pred cceEEEEEEeccCCCceeeeEe------eccCCcccC-CCccc
Confidence 4568999999999999999998 777777766 89987
No 199
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00042 Score=43.29 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
.++++||||+|||+|++
T Consensus 30 vv~iiGpSGSGKSTlLR 46 (240)
T COG1126 30 VVVIIGPSGSGKSTLLR 46 (240)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999996
No 200
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00079 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.8
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++++|++|+|||+|+.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~ 32 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLAR 32 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHH
Confidence 445678899999999999985
No 201
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.00055 Score=42.64 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|+||||||+|+.-
T Consensus 33 ~vv~lGpSGcGKTTLLnl 50 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNL 50 (259)
T ss_pred EEEEEcCCCccHHHHHHH
Confidence 378899999999999973
No 202
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.12 E-value=0.0013 Score=39.09 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|+++|.+|+|||+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ 19 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNT 19 (196)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3689999999999999986
No 203
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.11 E-value=0.00047 Score=41.14 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+|+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~ 40 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNE 40 (176)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3578999999999999974
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.10 E-value=0.00076 Score=47.47 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++++|+++||||||+.+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~ 469 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQ 469 (712)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 47999999999999999996
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.00052 Score=37.66 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|+.|+|||+++..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 57899999999999975
No 206
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.07 E-value=0.00033 Score=39.44 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+++..
T Consensus 2 vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEESSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999999985
No 207
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.06 E-value=0.00042 Score=38.85 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~ 18 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKR 18 (143)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999999986
No 208
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.06 E-value=0.00054 Score=39.11 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+++.+
T Consensus 2 i~i~GpsGsGKstl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999999985
No 209
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.06 E-value=0.0013 Score=44.19 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=18.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|+++|+++||||||+.+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nr 57 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNR 57 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 46899999999999999996
No 210
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.06 E-value=0.0014 Score=37.58 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=18.5
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++++|.+++|||+++.+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~ 120 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINA 120 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 346889999999999999986
No 211
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.05 E-value=0.00049 Score=42.83 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++||||+|||+|+.-
T Consensus 33 ~vaI~GpSGSGKSTLLni 50 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNL 50 (226)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999999974
No 212
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.05 E-value=0.0017 Score=46.41 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++.++|.++||||+|..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~ 22 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQ 22 (772)
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46899999999999999996
No 213
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.05 E-value=0.00054 Score=41.08 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++++||+|+|||+|+.+
T Consensus 5 ~~ivl~GpsG~GK~tl~~~ 23 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQA 23 (186)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999999985
No 214
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.05 E-value=0.00042 Score=40.16 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=13.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++.+
T Consensus 25 ~~~ll~G~~G~GKT~ll~~ 43 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRA 43 (185)
T ss_dssp --EEE-B-TTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5688999999999999985
No 215
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.03 E-value=0.00059 Score=39.95 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 3 ~~~i~G~sGsGKttl~~~ 20 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDY 20 (179)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 216
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00065 Score=41.34 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.3
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.||||||||+++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~ 23 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKA 23 (191)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467889999999999985
No 217
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.01 E-value=0.00059 Score=38.02 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 17 ~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 17 GVLITGDSGIGKTELALE 34 (107)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478899999999999974
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.00 E-value=0.00069 Score=37.00 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999999985
No 219
>KOG0073|consensus
Probab=96.99 E-value=0.0018 Score=39.01 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=28.0
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+.|+++|..+.|||+++.+ +.... .+...||.|
T Consensus 14 erE~riLiLGLdNsGKTti~~k------l~~~~-~~~i~pt~g 49 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKK------LLGED-TDTISPTLG 49 (185)
T ss_pred hheeEEEEEecCCCCchhHHHH------hcCCC-ccccCCccc
Confidence 4579999999999999999997 65433 455567766
No 220
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.98 E-value=0.00069 Score=39.56 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 3 ii~l~G~~GsGKsTl~~~ 20 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKA 20 (180)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999985
No 221
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.97 E-value=0.0027 Score=41.72 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|++++|||||+.+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~ 191 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNA 191 (429)
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 458999999999999999986
No 222
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.96 E-value=0.00069 Score=39.22 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=14.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
||++.|..++|||+|+.+
T Consensus 1 rI~i~G~~stGKTTL~~~ 18 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEA 18 (163)
T ss_dssp -EEEE--TTSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 789999999999999986
No 223
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=96.95 E-value=0.0023 Score=42.96 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.|.++|.++||||||+.+
T Consensus 160 dVglVG~pNaGKSTLLn~ 177 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSV 177 (424)
T ss_pred cEEEEcCCCCCHHHHHHH
Confidence 588999999999999985
No 224
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.95 E-value=0.00067 Score=43.01 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=17.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678999999999999986
No 225
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.95 E-value=0.0008 Score=34.13 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
..++.|++|+|||+++-.
T Consensus 25 ~tli~G~nGsGKSTllDA 42 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDA 42 (62)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378889999999999965
No 226
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.95 E-value=0.00065 Score=37.94 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 13 ~~~i~G~nGsGKStLl~~ 30 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKA 30 (137)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEccCCCccccceee
Confidence 578999999999999974
No 227
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.95 E-value=0.00044 Score=38.17 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=14.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+++.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp -EEEEE-TTSSHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHH
Confidence 467889999999999986
No 228
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.00087 Score=39.65 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.3
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|+++|.+|+|||++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~ 20 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAA 20 (183)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4799999999999999986
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.00085 Score=45.16 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=17.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.++.++|++|+|||+++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5789999999999999986
No 230
>PF05729 NACHT: NACHT domain
Probab=96.92 E-value=0.00067 Score=38.44 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.6
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|+.|+|||+++.+
T Consensus 3 l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEECCCCCChHHHHHH
Confidence 68899999999999985
No 231
>PRK00089 era GTPase Era; Reviewed
Probab=96.91 E-value=0.0013 Score=41.31 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.5
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|.++|+.|+|||||+.+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~ 24 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNA 24 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHH
Confidence 456789999999999999985
No 232
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.89 E-value=0.00083 Score=42.13 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.1
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|.+|+|||+++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~ 32 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKS 32 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4468999999999999998874
No 233
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.88 E-value=0.00081 Score=43.43 Aligned_cols=18 Identities=44% Similarity=0.685 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++|.||||||||+.+
T Consensus 166 ~svl~GqSGVGKSSLiN~ 183 (301)
T COG1162 166 ITVLLGQSGVGKSTLINA 183 (301)
T ss_pred eEEEECCCCCcHHHHHHh
Confidence 467889999999999986
No 234
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.00074 Score=42.32 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=14.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
-.++||||||||+++.-
T Consensus 36 TAlIGPSGcGKST~LR~ 52 (253)
T COG1117 36 TALIGPSGCGKSTLLRC 52 (253)
T ss_pred EEEECCCCcCHHHHHHH
Confidence 46889999999999963
No 235
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.85 E-value=0.00093 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+|+..
T Consensus 6 ~~i~i~G~sGsGKstl~~~ 24 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKA 24 (205)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3578999999999999974
No 236
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.84 E-value=0.0011 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.9
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|.++||||||+.+
T Consensus 102 ~~~v~~~G~~nvGKStliN~ 121 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINT 121 (157)
T ss_pred ceEEEEEeCCCCChHHHHHH
Confidence 46788999999999999986
No 237
>PRK12288 GTPase RsgA; Reviewed
Probab=96.82 E-value=0.001 Score=43.51 Aligned_cols=17 Identities=47% Similarity=0.771 Sum_probs=15.8
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|.+|||||||+.+
T Consensus 208 ~~~vG~sgVGKSTLiN~ 224 (347)
T PRK12288 208 SIFVGQSGVGKSSLINA 224 (347)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999999986
No 238
>PF13173 AAA_14: AAA domain
Probab=96.81 E-value=0.00095 Score=37.39 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|+.+||||+++.+
T Consensus 4 ~~~l~G~R~vGKTtll~~ 21 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQ 21 (128)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 467889999999999986
No 239
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.79 E-value=0.0011 Score=42.05 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=15.0
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++||+|+|||+|+..
T Consensus 31 ~~iiGpNG~GKSTLLk~ 47 (258)
T COG1120 31 TGILGPNGSGKSTLLKC 47 (258)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56889999999999974
No 240
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0016 Score=41.17 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=15.4
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|++.
T Consensus 33 VaiIG~SGaGKSTLLR~ 49 (258)
T COG3638 33 VAIIGPSGAGKSTLLRS 49 (258)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 78899999999999964
No 241
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.78 E-value=0.0014 Score=38.87 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++++-|+.|+|||+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k 18 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKK 18 (168)
T ss_dssp EEEEES-TTSSHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHH
Confidence 688999999999999986
No 242
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.77 E-value=0.00082 Score=39.92 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.3
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|+.|+|||+|+..
T Consensus 21 ~~~~l~G~rg~GKTsLl~~ 39 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKE 39 (234)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEcCCcCCHHHHHHH
Confidence 3577889999999999985
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.77 E-value=0.0023 Score=37.41 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..-+++.|.+|+|||+++..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~ 26 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKA 26 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 35789999999999999974
No 244
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.0011 Score=44.35 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++|++|||||+++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678999999999999986
No 245
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.76 E-value=0.0013 Score=39.56 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~l~G~nGsGKSTLl~~ 49 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNI 49 (218)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 467999999999999974
No 246
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.76 E-value=0.0037 Score=40.72 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=29.1
Q ss_pred eEEEEECCCCChHHHHHhHhhhcccccc-ccccccccceEEEEee-EEEEEEecC
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSL-SQLLTTHVPTVWAIDQ-YRIYKDTLE 65 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~-~~~~~~~~~ti~~vd~-~~~~~~i~~ 65 (65)
..|.++|.+++|||||+.+ +++..... +...++..|.++.++. -...+.++|
T Consensus 159 adVglVG~PNaGKSTLln~-ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D 212 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISA-VSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIAD 212 (335)
T ss_pred CCEEEEcCCCCCHHHHHHH-HHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEe
Confidence 3478999999999999985 33221111 1112345677774332 113455554
No 247
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.75 E-value=0.0019 Score=38.81 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+.+.|++|+|||+|+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~ 25 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVAST 25 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 457899999999999999975
No 248
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.75 E-value=0.0033 Score=39.60 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.8
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.++|.++|||||++.+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~ 137 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINR 137 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 357899999999999999985
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.74 E-value=0.0024 Score=39.80 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
|++++|++++||||+..-
T Consensus 1 KiLLmG~~~SGKTSi~~v 18 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSV 18 (232)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEEcCCCCChhhHHHH
Confidence 799999999999998853
No 250
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.73 E-value=0.0043 Score=43.15 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.0
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++.++|+.++|||||+.+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~ 106 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDS 106 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 457899999999999999996
No 251
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.002 Score=42.83 Aligned_cols=19 Identities=42% Similarity=0.545 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|||||+++.+
T Consensus 175 ~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4788999999999999986
No 252
>PHA00729 NTP-binding motif containing protein
Probab=96.72 E-value=0.0018 Score=40.34 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.++++.|++|+|||+++.+
T Consensus 18 ~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4799999999999999986
No 253
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.71 E-value=0.0012 Score=38.16 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.9
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||++...
T Consensus 1 i~l~G~~GsGKSTla~~ 17 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASA 17 (163)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 46889999999999875
No 254
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.71 E-value=0.0015 Score=38.55 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++||+|+||++|..+
T Consensus 4 ~ivl~Gpsg~GK~~l~~~ 21 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKR 21 (183)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999999985
No 255
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.70 E-value=0.0015 Score=38.68 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+||++++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~ 21 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAE 21 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999985
No 256
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.70 E-value=0.0016 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKL 48 (216)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 257
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.70 E-value=0.0015 Score=40.72 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
..+++|.+|||||||+.+
T Consensus 122 ~~~~~G~sgvGKStLiN~ 139 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINA 139 (245)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999999986
No 258
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.70 E-value=0.0016 Score=38.93 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (205)
T cd03226 28 IIALTGKNGAGKTTLAKI 45 (205)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 259
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.69 E-value=0.0015 Score=42.20 Aligned_cols=20 Identities=40% Similarity=0.403 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 35678999999999999986
No 260
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.69 E-value=0.002 Score=38.23 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++||+|||||.++..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~ 22 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKA 22 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHH
Confidence 35789999999999999875
No 261
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0014 Score=42.14 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.9
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
-++++|+||+|||+++.
T Consensus 29 f~vliGpSGsGKTTtLk 45 (309)
T COG1125 29 FLVLIGPSGSGKTTTLK 45 (309)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 36788999999999996
No 262
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.68 E-value=0.0017 Score=39.71 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~l~G~nGsGKSTLl~~ 47 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRC 47 (243)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 263
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.67 E-value=0.0014 Score=35.78 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
|++.|.+|+|||+++..
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 57889999999999984
No 264
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.67 E-value=0.0013 Score=39.68 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|+.++|||+|+.+
T Consensus 2 nv~iiG~~~~GKTtL~~~ 19 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDM 19 (213)
T ss_pred cEEEEcCCCCCHHHHHHH
Confidence 688999999999999986
No 265
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.66 E-value=0.002 Score=39.00 Aligned_cols=19 Identities=47% Similarity=0.503 Sum_probs=17.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+++.++|+.|+|||+++.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~ 20 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEA 20 (199)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 6899999999999999985
No 266
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.66 E-value=0.0018 Score=38.80 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~ 46 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRL 46 (211)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 267
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.66 E-value=0.0039 Score=36.99 Aligned_cols=20 Identities=40% Similarity=0.473 Sum_probs=18.2
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.++|.++||||||+.+
T Consensus 117 ~~~~~~vG~pnvGKSslin~ 136 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINS 136 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 36899999999999999986
No 268
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0016 Score=39.11 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~ 44 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRI 44 (211)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 678999999999999974
No 269
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0018 Score=38.79 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRM 45 (210)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 270
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.65 E-value=0.0017 Score=40.03 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRN 62 (269)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 578999999999999985
No 271
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.64 E-value=0.0026 Score=38.31 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..-+.+.|++|+|||+|+..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~ 25 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARK 25 (207)
T ss_pred eEEEEEECCCCCCHHHHHHH
Confidence 35688999999999999975
No 272
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.63 E-value=0.0019 Score=38.70 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKL 46 (214)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 273
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.63 E-value=0.0019 Score=38.94 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (222)
T cd03224 28 IVALLGRNGAGKTTLLKT 45 (222)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 274
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.63 E-value=0.002 Score=40.80 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||.++..
T Consensus 34 ~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHh
Confidence 5689999999999999986
No 275
>PRK13695 putative NTPase; Provisional
Probab=96.63 E-value=0.002 Score=37.72 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+|+++.|++|+|||+++..
T Consensus 1 ~~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLK 19 (174)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4789999999999999985
No 276
>PRK12289 GTPase RsgA; Reviewed
Probab=96.63 E-value=0.0016 Score=42.77 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=15.9
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|||||||+.+
T Consensus 175 ~v~iG~SgVGKSSLIN~ 191 (352)
T PRK12289 175 TVVAGPSGVGKSSLINR 191 (352)
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 68999999999999986
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.0019 Score=42.78 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=17.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.-.++++|++|||||+++.+
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34678999999999999987
No 278
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.62 E-value=0.002 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~ 50 (228)
T cd03257 33 TLGLVGESGSGKSTLARA 50 (228)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 279
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.61 E-value=0.0018 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 20 ~~~i~G~nGsGKSTLl~~ 37 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLH 37 (190)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 280
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.002 Score=39.29 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRL 45 (235)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999974
No 281
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.60 E-value=0.0021 Score=38.34 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~ 43 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNI 43 (206)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 282
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.60 E-value=0.0021 Score=38.54 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRC 45 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 283
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.60 E-value=0.0021 Score=38.36 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred EEEEECCCCChHHHHHHH
Confidence 578999999999999973
No 284
>PRK06893 DNA replication initiation factor; Validated
Probab=96.58 E-value=0.0019 Score=39.68 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+|+..
T Consensus 41 ~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478899999999999974
No 285
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.58 E-value=0.0022 Score=38.89 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (227)
T cd03260 28 ITALIGPSGCGKSTLLRL 45 (227)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 286
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0022 Score=38.53 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (213)
T cd03259 28 FLALLGPSGCGKTTLLRL 45 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 287
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.58 E-value=0.0022 Score=38.49 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~l~G~nGsGKSTLl~~ 47 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKL 47 (214)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 288
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0022 Score=38.74 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKM 45 (220)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 289
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.57 E-value=0.0021 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 39 ~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4688999999999999975
No 290
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.57 E-value=0.0052 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|.++|||||++.+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~ 140 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINR 140 (287)
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 457899999999999999985
No 291
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.57 E-value=0.0022 Score=38.51 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~ 44 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKA 44 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 292
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.55 E-value=0.0025 Score=37.63 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|++|+|||++...
T Consensus 5 ~~I~liG~~GaGKStl~~~ 23 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQ 23 (172)
T ss_pred CEEEEECCCCcCHHHHHHH
Confidence 3699999999999999985
No 293
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.55 E-value=0.0022 Score=37.43 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~ 22 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEK 22 (188)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999999975
No 294
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.55 E-value=0.0023 Score=38.52 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~ 50 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRM 50 (218)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 295
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.55 E-value=0.0023 Score=38.59 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~ 50 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHL 50 (221)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 296
>PRK03839 putative kinase; Provisional
Probab=96.55 E-value=0.0024 Score=37.49 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|.+|+|||++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~ 19 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKL 19 (180)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999999975
No 297
>PF13479 AAA_24: AAA domain
Probab=96.54 E-value=0.0026 Score=38.65 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++-|++|+|||+++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 47999999999999999985
No 298
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0024 Score=38.59 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~ 49 (220)
T cd03293 32 FVALVGPSGCGKSTLLRI 49 (220)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 299
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.54 E-value=0.0023 Score=38.91 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNL 45 (236)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 300
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0024 Score=38.94 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (241)
T cd03256 29 FVALIGPSGAGKSTLLRC 46 (241)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999974
No 301
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.53 E-value=0.0024 Score=38.78 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYM 45 (232)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 302
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.0021 Score=40.37 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||+|+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred CeEEEEeCCCCCHHHHHHH
Confidence 4688999999999999975
No 303
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.52 E-value=0.0024 Score=38.94 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKT 45 (243)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 304
>PRK14530 adenylate kinase; Provisional
Probab=96.51 E-value=0.0026 Score=38.47 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=16.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++|+|||++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~ 22 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSN 22 (215)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 799999999999999985
No 305
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0024 Score=42.85 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.8
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++.++|++|+|||+++.+
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35789999999999999986
No 306
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.51 E-value=0.0023 Score=43.23 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-++.++|++|+|||+|+.-
T Consensus 362 ~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLML 380 (529)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3678999999999999973
No 307
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.51 E-value=0.0025 Score=37.94 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=15.1
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.+.|++|+|||+++..
T Consensus 2 igi~G~~GsGKSTl~~~ 18 (198)
T cd02023 2 IGIAGGSGSGKTTVAEE 18 (198)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56889999999999974
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.50 E-value=0.0028 Score=40.12 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++.+
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5677889999999999986
No 309
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.50 E-value=0.0026 Score=38.32 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKM 47 (220)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.50 E-value=0.0025 Score=38.62 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 15 ~~~l~G~NGsGKSTLlk~ 32 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRL 32 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 311
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0026 Score=38.81 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 37 ~~~l~G~nGsGKSTLl~~ 54 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 312
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.49 E-value=0.0025 Score=39.27 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+|+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3688999999999999974
No 313
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.49 E-value=0.0027 Score=38.09 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRM 45 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 314
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0026 Score=39.53 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNL 46 (255)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 315
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0027 Score=39.69 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 40 ~~~I~G~NGsGKSTLlk~ 57 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRL 57 (257)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 316
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.46 E-value=0.0033 Score=31.89 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.1
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.+.|++|+|||++..+
T Consensus 2 i~i~G~~gsGKst~~~~ 18 (69)
T cd02019 2 IAITGGSGSGKSTVAKK 18 (69)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999999985
No 317
>PRK00098 GTPase RsgA; Reviewed
Probab=96.46 E-value=0.0025 Score=40.64 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|||||||+..
T Consensus 166 ~~~~~G~sgvGKStlin~ 183 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNA 183 (298)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999999985
No 318
>PRK13949 shikimate kinase; Provisional
Probab=96.46 E-value=0.0029 Score=37.30 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=16.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|+.|+|||++...
T Consensus 3 ~I~liG~~GsGKstl~~~ 20 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKA 20 (169)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 799999999999999974
No 319
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.45 E-value=0.0029 Score=38.44 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKT 45 (230)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 320
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0029 Score=38.51 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~ 50 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRC 50 (233)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.45 E-value=0.003 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (163)
T cd03216 28 VHALLGENGAGKSTLMKI 45 (163)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 322
>PRK14532 adenylate kinase; Provisional
Probab=96.45 E-value=0.0029 Score=37.29 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=16.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|+.|+|||++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~ 19 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKR 19 (188)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999999985
No 323
>PRK06526 transposase; Provisional
Probab=96.45 E-value=0.0023 Score=40.15 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+|+..
T Consensus 99 ~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ceEEEEeCCCCchHHHHHH
Confidence 4789999999999999874
No 324
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.45 E-value=0.0026 Score=38.07 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKI 45 (208)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999974
No 325
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.44 E-value=0.0032 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+++.|++|+|||+++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHH
Confidence 346789999999999999964
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.44 E-value=0.0028 Score=38.09 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.4
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||+++..
T Consensus 4 ilI~GptGSGKTTll~~ 20 (198)
T cd01131 4 VLVTGPTGSGKSTTLAA 20 (198)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999999974
No 327
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.0029 Score=38.68 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~l~G~nGsGKSTLl~~ 48 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYM 48 (241)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 328
>PRK10908 cell division protein FtsE; Provisional
Probab=96.44 E-value=0.003 Score=38.20 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKL 47 (222)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 329
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.0023 Score=43.16 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++.+
T Consensus 224 ~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999999987
No 330
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.43 E-value=0.003 Score=37.72 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~ 46 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKL 46 (200)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 331
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.43 E-value=0.003 Score=38.56 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSL 46 (236)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 332
>PRK09087 hypothetical protein; Validated
Probab=96.42 E-value=0.0027 Score=39.11 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+|++.
T Consensus 46 ~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASI 63 (226)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 378999999999999985
No 333
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0031 Score=37.87 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~ 52 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKA 52 (202)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 334
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.42 E-value=0.0032 Score=38.64 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.1
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
+.+....|+++|.|.|||||++..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~ 43 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINA 43 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHH
Confidence 334557899999999999999985
No 335
>PRK08181 transposase; Validated
Probab=96.41 E-value=0.0025 Score=40.42 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+|+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred ceEEEEecCCCcHHHHHHH
Confidence 4699999999999999975
No 336
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.41 E-value=0.0033 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 ~~~l~G~nGsGKStLl~~ 44 (180)
T cd03214 27 IVGILGPNGAGKSTLLKT 44 (180)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577999999999999973
No 337
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0031 Score=37.93 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+|+.-
T Consensus 24 e~~~i~G~nGsGKSTLl~~ 42 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRC 42 (214)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3578999999999999974
No 338
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.41 E-value=0.0031 Score=39.17 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 ~~~i~G~NGsGKSTLlk~ 44 (246)
T cd03237 27 VIGILGPNGIGKTTFIKM 44 (246)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 339
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0033 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (178)
T cd03229 28 IVALLGPSGSGKSTLLRC 45 (178)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 340
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.40 E-value=0.0033 Score=37.47 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRI 45 (198)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 341
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.40 E-value=0.0028 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+|+..
T Consensus 44 ~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999999975
No 342
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0032 Score=38.52 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (239)
T cd03296 30 LVALLGPSGSGKTTLLRL 47 (239)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 343
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0033 Score=37.72 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 26 ~~~l~G~nGsGKSTLl~~ 43 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNL 43 (211)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0035 Score=36.73 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKStLl~~ 45 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKI 45 (173)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999973
No 345
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0032 Score=39.30 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMN 46 (271)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999973
No 346
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0033 Score=38.71 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 34 ~~~i~G~nGsGKSTLl~~ 51 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRC 51 (253)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 347
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.38 E-value=0.0034 Score=37.38 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~ 45 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRM 45 (195)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 568999999999999974
No 348
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.38 E-value=0.0032 Score=35.32 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||+++..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 57889999999999975
No 349
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.38 E-value=0.0029 Score=38.65 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
...++|++|+|||+|+..
T Consensus 25 ~~~i~GpNGsGKStll~a 42 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAA 42 (243)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 457889999999999975
No 350
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.38 E-value=0.0034 Score=38.08 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 38 ~~~i~G~nGsGKSTLl~~ 55 (228)
T PRK10584 38 TIALIGESGSGKSTLLAI 55 (228)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 351
>PRK02496 adk adenylate kinase; Provisional
Probab=96.38 E-value=0.004 Score=36.65 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|++|+|||++...
T Consensus 2 ~~i~i~G~pGsGKst~a~~ 20 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVV 20 (184)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5799999999999999874
No 352
>PRK08233 hypothetical protein; Provisional
Probab=96.38 E-value=0.0041 Score=36.11 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+-|.+.|.+|+|||+++.+
T Consensus 4 ~iI~I~G~~GsGKtTla~~ 22 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTER 22 (182)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5677889999999999985
No 353
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.0034 Score=38.45 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRV 47 (242)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 354
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.37 E-value=0.0034 Score=38.17 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~ 52 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKI 52 (225)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 355
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.37 E-value=0.0033 Score=38.69 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGC 48 (253)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 356
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.37 E-value=0.003 Score=38.02 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 24 ~~~i~G~nGsGKStll~a 41 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDA 41 (197)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 467899999999999975
No 357
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.37 E-value=0.0032 Score=38.92 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
...++|++|+|||+|+..
T Consensus 27 ~~~IvG~NGsGKStll~A 44 (251)
T cd03273 27 FNAITGLNGSGKSNILDA 44 (251)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 356889999999999975
No 358
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0035 Score=37.30 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~l~G~nGsGKSTLl~~ 52 (192)
T cd03232 35 LTALMGESGAGKTTLLDV 52 (192)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 359
>PRK08727 hypothetical protein; Validated
Probab=96.36 E-value=0.0031 Score=38.87 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.8
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||+|+..
T Consensus 44 l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 44 LYLSGPAGTGKTHLALA 60 (233)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 88999999999999975
No 360
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0035 Score=38.56 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRV 48 (250)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 361
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.0029 Score=38.57 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++||+|.|||+|++-
T Consensus 30 tlvllgpsgagkssllr~ 47 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRV 47 (242)
T ss_pred EEEEECCCCCchHHHHHH
Confidence 478999999999999963
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.36 E-value=0.01 Score=34.14 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++++|.++||||+++..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~ 119 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINA 119 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHH
Confidence 346789999999999999984
No 363
>PRK05642 DNA replication initiation factor; Validated
Probab=96.35 E-value=0.0031 Score=38.91 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|++|+|||+|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3567889999999999874
No 364
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.0036 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~ 46 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRI 46 (204)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 365
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.0036 Score=37.63 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRL 47 (207)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 366
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.35 E-value=0.015 Score=38.45 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.3
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.++|.+++|||||+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ 192 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINA 192 (435)
T ss_pred cceEEEEECCCCCCHHHHHHH
Confidence 468999999999999999986
No 367
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.35 E-value=0.008 Score=41.69 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=16.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.|.++|..++|||||+.+
T Consensus 2 ~I~iiG~~d~GKTTLi~a 19 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKA 19 (581)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999996
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0064 Score=36.59 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...|+.+-|+.|||||+++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~k 24 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLK 24 (179)
T ss_pred cceEEEEeCCCCccHHHHHHH
Confidence 457999999999999999987
No 369
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0036 Score=37.93 Aligned_cols=18 Identities=44% Similarity=0.608 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (229)
T cd03254 31 TVAIVGPTGAGKTTLINL 48 (229)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999999974
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.34 E-value=0.0037 Score=37.13 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 26 ~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 26 KNILISGGTGSGKTTLLNA 44 (186)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999974
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=96.34 E-value=0.0032 Score=41.11 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=17.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++|++|+|||+++.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46789999999999998875
No 372
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.34 E-value=0.0029 Score=43.39 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
-+.++|++|+|||+|+.
T Consensus 34 iv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 34 LLFLCGSSGDGKSEILA 50 (504)
T ss_pred EEEEECCCCCCHHHHHh
Confidence 47899999999999997
No 373
>PRK06620 hypothetical protein; Validated
Probab=96.34 E-value=0.0032 Score=38.51 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+|+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999999974
No 374
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.34 E-value=0.0038 Score=36.65 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 30 KIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 375
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.34 E-value=0.0041 Score=40.76 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.9
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++.|++|+|||+++..
T Consensus 162 ~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred CCeEEEECCCCccHHHHHHH
Confidence 46799999999999999975
No 376
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.33 E-value=0.0039 Score=36.41 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (166)
T cd03223 29 RLLITGPSGTGKSSLFRA 46 (166)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 377
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0079 Score=37.35 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.2
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+-|-+-|++|+|||+++.+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~ 27 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKE 27 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHH
Confidence 4456778889999999999985
No 378
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.0037 Score=38.42 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~ 50 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRS 50 (252)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 379
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.32 E-value=0.0038 Score=38.14 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 13 ~~~i~G~nGsGKSTLl~~ 30 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNL 30 (230)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 380
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.004 Score=39.45 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.1
Q ss_pred eEEEEECCCCChHHHHHh
Q psy15257 13 VKCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~ 30 (65)
-+.+++|++|.|||+|+.
T Consensus 58 e~W~I~G~NGsGKTTLL~ 75 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLS 75 (257)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 357899999999999997
No 381
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.32 E-value=0.0038 Score=38.06 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKL 47 (237)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 382
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.32 E-value=0.0039 Score=36.76 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (182)
T cd03215 28 IVGIAGLVGNGQTELAEA 45 (182)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 383
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0037 Score=39.16 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~l~G~nGsGKSTLl~~ 52 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQL 52 (280)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999973
No 384
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0038 Score=38.51 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~ 52 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRT 52 (254)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 385
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.31 E-value=0.0039 Score=39.58 Aligned_cols=19 Identities=47% Similarity=0.697 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~ 180 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINA 180 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999999985
No 386
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.31 E-value=0.0039 Score=38.30 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRC 48 (250)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 387
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0033 Score=41.14 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 33 ~~llG~sGsGKSTLLr~ 49 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRM 49 (356)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 67999999999999974
No 388
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0033 Score=41.08 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 34 ~~~llGpsGsGKSTLLr~ 51 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRL 51 (351)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368899999999999973
No 389
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0035 Score=38.62 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~l~G~nGsGKSTLl~~ 49 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRT 49 (253)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 390
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0034 Score=43.46 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-|+.++|.+|+|||+++.-
T Consensus 365 EkvAIlG~SGsGKSTllqL 383 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQL 383 (573)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999999973
No 391
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.004 Score=38.17 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKM 46 (242)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 392
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0039 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 39 ~~~l~G~nGsGKSTLl~~ 56 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQL 56 (289)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 393
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.29 E-value=0.0041 Score=37.48 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~ 49 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 394
>PRK06547 hypothetical protein; Provisional
Probab=96.29 E-value=0.005 Score=36.58 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.7
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+.+.|++|+|||++...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~ 34 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGA 34 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 346788889999999999975
No 395
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.28 E-value=0.0041 Score=38.20 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKL 48 (241)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 396
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.28 E-value=0.0036 Score=37.83 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 27 ~~~ltGpNg~GKSTllr~ 44 (199)
T cd03283 27 GILITGSNMSGKSTFLRT 44 (199)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 468899999999999964
No 397
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.28 E-value=0.0043 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKStLl~~ 47 (173)
T cd03246 30 SLAIIGPSGSGKSTLARL 47 (173)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 398
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.28 E-value=0.0032 Score=34.41 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.8
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
|.+-|++|+|||.++..
T Consensus 1 I~i~G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKE 17 (107)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 46789999999999985
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.0034 Score=42.84 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|||||+++.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4678999999999999986
No 400
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.28 E-value=0.0041 Score=38.47 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~l~G~nGsGKSTLl~~ 48 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAA 48 (254)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 401
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.27 E-value=0.004 Score=35.68 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKStLl~~ 45 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKL 45 (144)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999973
No 402
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.27 E-value=0.0042 Score=38.20 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
.+.++|++|+|||+|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSK 51 (252)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57799999999999997
No 403
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.27 E-value=0.0042 Score=38.07 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 49 ~~~i~G~NGsGKSTLl~~ 66 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKI 66 (236)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 404
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0041 Score=38.50 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 40 ~~~l~G~nGsGKSTLl~~ 57 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKT 57 (259)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 405
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.27 E-value=0.0034 Score=38.44 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=14.4
Q ss_pred EEEEECCCCChHHHHH
Q psy15257 14 KCVVVGDTAVGKTRLI 29 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~ 29 (65)
-+.++|++|+|||+|+
T Consensus 23 ~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 23 LVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999997
No 406
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0042 Score=38.55 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 41 ~~~i~G~nGsGKSTLl~~ 58 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRT 58 (260)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 407
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.26 E-value=0.0041 Score=37.55 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 39 ~~~i~G~nGsGKSTLl~~ 56 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRV 56 (214)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 467999999999999974
No 408
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.26 E-value=0.0037 Score=42.11 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=17.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|.+|+|||+++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999999986
No 409
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0042 Score=38.45 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~ 49 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRT 49 (258)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 410
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.26 E-value=0.0042 Score=37.95 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~l~G~nGsGKSTLl~~ 47 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDV 47 (242)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 411
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0043 Score=38.16 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRS 48 (250)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 412
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.0025 Score=41.83 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=28.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
...+-++++|-+|+|||+.+.+ .........+..-+.+.|.||+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaK------LA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAK------LAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHH------HHHHHHHCCCeEEEEecchHHH
Confidence 3467899999999999999987 3333333334444444566553
No 413
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.26 E-value=0.0043 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 14 ~~~i~G~nGsGKSTLl~~ 31 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLA 31 (230)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 414
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.25 E-value=0.004 Score=39.23 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999999975
No 415
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.25 E-value=0.0043 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 39 ~~~i~G~nGsGKSTLl~~ 56 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKM 56 (265)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 416
>PRK13947 shikimate kinase; Provisional
Probab=96.25 E-value=0.0046 Score=35.77 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=16.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|+++|.+|+|||++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~ 20 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKR 20 (171)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 689999999999999975
No 417
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.25 E-value=0.0043 Score=37.99 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
.+.++|++|+|||+|+.
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSA 45 (248)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999997
No 418
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.25 E-value=0.0044 Score=37.63 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~l~G~nGsGKSTLlk~ 52 (226)
T cd03234 35 VMAILGSSGSGKTTLLDA 52 (226)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 419
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.24 E-value=0.0043 Score=38.64 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 39 ~~~i~G~nGsGKSTLl~~ 56 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARL 56 (265)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 420
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.24 E-value=0.0042 Score=38.77 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 41 ~~~i~G~NGsGKSTLl~~ 58 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKM 58 (267)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 467999999999999974
No 421
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.24 E-value=0.0043 Score=36.38 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=16.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.=+++.|++|+|||++...
T Consensus 15 ~gvLi~G~sG~GKStlal~ 33 (149)
T cd01918 15 IGVLITGPSGIGKSELALE 33 (149)
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3578999999999999875
No 422
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0043 Score=38.80 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~l~G~nGsGKSTLl~~ 52 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKA 52 (272)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 423
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.24 E-value=0.0044 Score=37.75 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 50 ~~~i~G~nGsGKSTLl~~ 67 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRL 67 (224)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 424
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.24 E-value=0.0043 Score=38.39 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 34 ~~~i~G~nGsGKSTLl~~ 51 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNA 51 (258)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 425
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.24 E-value=0.0045 Score=37.04 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRI 45 (201)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 426
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.23 E-value=0.0038 Score=37.76 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 24 ~~~i~G~NGsGKTTLl~a 41 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEA 41 (204)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 568889999999999974
No 427
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0044 Score=38.14 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~ 50 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNC 50 (255)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999973
No 428
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.23 E-value=0.0045 Score=38.16 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRI 45 (252)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 429
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.22 E-value=0.0042 Score=38.00 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.+.||+|+|||+|+..
T Consensus 31 ~iaitGPSG~GKStllk~ 48 (223)
T COG4619 31 FIAITGPSGCGKSTLLKI 48 (223)
T ss_pred eEEEeCCCCccHHHHHHH
Confidence 467889999999999974
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.22 E-value=0.0039 Score=41.74 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|||||+++.+
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678999999999999886
No 431
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.22 E-value=0.0046 Score=37.02 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+.++|.+|+|||+|+.+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~ 25 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKK 25 (173)
T ss_pred eEEEEECCCCChHHHHHHH
Confidence 3578899999999999876
No 432
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.22 E-value=0.0044 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++.++|++|+|||+|+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34789999999999999974
No 433
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.22 E-value=0.0045 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~ 52 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRL 52 (269)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999973
No 434
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.21 E-value=0.0041 Score=36.51 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|+++|+.|+|||++..+
T Consensus 1 ~I~i~G~pGsGKst~a~~ 18 (194)
T cd01428 1 RILLLGPPGSGKGTQAER 18 (194)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999999975
No 435
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.21 E-value=0.0046 Score=38.12 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 34 ~~~i~G~nGsGKSTLl~~ 51 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRC 51 (253)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999973
No 436
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.21 E-value=0.0048 Score=37.32 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 36 ~~~l~G~nGsGKSTLl~~ 53 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKS 53 (224)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 437
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.21 E-value=0.0025 Score=35.00 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.6
Q ss_pred EECCCCChHHHHHhH
Q psy15257 17 VVGDTAVGKTRLICA 31 (65)
Q Consensus 17 ~lG~~gvGKTsl~~~ 31 (65)
++|+.|+|||+++.+
T Consensus 1 i~G~~gsGKstl~~~ 15 (163)
T cd00880 1 LFGRTNAGKSSLLNA 15 (163)
T ss_pred CcCCCCCCHHHHHHH
Confidence 479999999999986
No 438
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.21 E-value=0.0047 Score=38.40 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~I~G~NGsGKSTLl~~ 49 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRV 49 (251)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 439
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.20 E-value=0.0039 Score=37.17 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|++|+|||.|+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 35799999999999999875
No 440
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.20 E-value=0.0047 Score=38.64 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~IvG~nGsGKSTLlk~ 45 (255)
T cd03236 28 VLGLVGPNGIGKSTALKI 45 (255)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999974
No 441
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0047 Score=37.62 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~ 44 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNL 44 (232)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 442
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0045 Score=40.62 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~l~G~nGsGKSTLL~~ 48 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRM 48 (369)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 468999999999999973
No 443
>PRK14531 adenylate kinase; Provisional
Probab=96.20 E-value=0.0052 Score=36.37 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|++|+|||++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~ 21 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAAR 21 (183)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4799999999999999875
No 444
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.20 E-value=0.0042 Score=38.16 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRS 46 (247)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 445
>PLN02772 guanylate kinase
Probab=96.20 E-value=0.0055 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++++||+||||++|+.+
T Consensus 136 k~iVlsGPSGvGKsTL~~~ 154 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISM 154 (398)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578889999999999985
No 446
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.20 E-value=0.012 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.|.++|.+++|||||+.+
T Consensus 161 dValVG~PNaGKSTLln~ 178 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRA 178 (390)
T ss_pred cEEEEcCCCCCHHHHHHH
Confidence 578999999999999985
No 447
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0042 Score=38.85 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 37 ~~~l~G~nGsGKSTLl~~ 54 (271)
T PRK13632 37 YVAILGHNGSGKSTISKI 54 (271)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 448
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.20 E-value=0.0045 Score=40.43 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~l~GpsGsGKSTLLr~ 49 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRI 49 (353)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 449
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0048 Score=37.93 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRT 48 (250)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 450
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.19 E-value=0.0049 Score=37.32 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 42 ~~~i~G~nGsGKSTLl~~ 59 (226)
T cd03248 42 VTALVGPSGSGKSTVVAL 59 (226)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999974
No 451
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.19 E-value=0.0048 Score=35.03 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|.+|+|||++...
T Consensus 2 i~l~G~~GsGKST~a~~ 18 (150)
T cd02021 2 IVVMGVSGSGKSTVGKA 18 (150)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 57889999999999985
No 452
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0043 Score=38.82 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 52 ~~~l~G~nGsGKSTLl~~ 69 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRC 69 (269)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 453
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0048 Score=38.58 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 41 ~~~l~G~nGsGKSTLl~~ 58 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRS 58 (269)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 454
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.0046 Score=38.83 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=17.7
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|++|+|||.|+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcEEEECCCCCcHHHHHHH
Confidence 45789999999999999985
No 455
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0047 Score=40.21 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 26 ~~~l~G~nGsGKSTLl~~ 43 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINA 43 (352)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 456
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.18 E-value=0.0052 Score=38.11 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
++++++|++|+|||++..+
T Consensus 7 mrIvl~G~PGsGK~T~a~~ 25 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEI 25 (229)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6799999999999999985
No 457
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.17 E-value=0.0048 Score=38.63 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++++|++|+||||++..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~ 45 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLEN 45 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHH
Confidence 345799999999999999985
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.17 E-value=0.0035 Score=36.08 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|+.++|||+|+.+
T Consensus 2 vv~VvG~~~sGKTTl~~~ 19 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRK 19 (140)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999985
No 459
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0054 Score=40.90 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.5
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++++||+|||||-++.|
T Consensus 49 ~PKNILMIGpTGVGKTEIARR 69 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARR 69 (444)
T ss_pred CccceEEECCCCCcHHHHHHH
Confidence 346799999999999999986
No 460
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.17 E-value=0.0049 Score=39.19 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~l~G~NGaGKSTLl~~ 49 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARM 49 (303)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 461
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.17 E-value=0.0046 Score=37.33 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=14.3
Q ss_pred EEEECCCCChHHHHHh
Q psy15257 15 CVVVGDTAVGKTRLIC 30 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~ 30 (65)
+-+.||+|||||+|+.
T Consensus 31 vtlMGPSGcGKSTLls 46 (213)
T COG4136 31 VTLMGPSGCGKSTLLS 46 (213)
T ss_pred EEEECCCCccHHHHHH
Confidence 5688999999999996
No 462
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.16 E-value=0.0048 Score=35.53 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|+.|+|||++++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~ 41 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQG 41 (133)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 578999999999999975
No 463
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.16 E-value=0.0052 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~ 45 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKM 45 (223)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 464
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0052 Score=37.34 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (234)
T cd03251 30 TVALVGPSGSGKSTLVNL 47 (234)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999974
No 465
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.15 E-value=0.0043 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 42 ~~~LlGpsGsGKSTLLr~ 59 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRL 59 (375)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367899999999999973
No 466
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.15 E-value=0.0045 Score=36.61 Aligned_cols=19 Identities=53% Similarity=0.606 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|.++||||+|+..
T Consensus 128 ~~~~~~G~~nvGKStliN~ 146 (190)
T cd01855 128 GDVYVVGATNVGKSTLINA 146 (190)
T ss_pred CcEEEEcCCCCCHHHHHHH
Confidence 4789999999999999985
No 467
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.15 E-value=0.005 Score=37.25 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+|+..
T Consensus 30 ~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 30 LFLICGPTGAGKSTILDA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 468
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.15 E-value=0.0048 Score=36.61 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~ 22 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSK 22 (176)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999999974
No 469
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0049 Score=36.02 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~l~G~nGsGKstLl~~ 47 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKL 47 (171)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999974
No 470
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.14 E-value=0.0047 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||++..+
T Consensus 2 ~li~G~~G~GKT~l~~~ 18 (187)
T cd01124 2 TLLSGGPGTGKTTFALQ 18 (187)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 57889999999999986
No 471
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.14 E-value=0.0052 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|.+|+|||++...
T Consensus 4 ~i~l~G~~gsGKst~a~~ 21 (175)
T cd00227 4 IIILNGGSSAGKSSIARA 21 (175)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999985
No 472
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.14 E-value=0.0054 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~ 46 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRC 46 (240)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 473
>KOG0060|consensus
Probab=96.13 E-value=0.0044 Score=43.40 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.||+|+|||||++-
T Consensus 462 ~~LLItG~sG~GKtSLlRv 480 (659)
T KOG0060|consen 462 QNLLITGPSGCGKTSLLRV 480 (659)
T ss_pred CeEEEECCCCCchhHHHHH
Confidence 3578999999999999963
No 474
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0045 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 48 ~~llGpsGsGKSTLLr~ 64 (377)
T PRK11607 48 FALLGASGCGKSTLLRM 64 (377)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 57999999999999974
No 475
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.13 E-value=0.0033 Score=36.66 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
.++.|++|+|||+++..
T Consensus 22 ~vi~G~Ng~GKStil~a 38 (202)
T PF13476_consen 22 NVIYGPNGSGKSTILEA 38 (202)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46779999999999975
No 476
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.13 E-value=0.0053 Score=37.33 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+|+.-
T Consensus 7 e~~~l~G~nGsGKSTLl~~ 25 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRA 25 (223)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3678999999999999974
No 477
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.13 E-value=0.005 Score=36.91 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||+++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~ 48 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRS 48 (202)
T ss_pred eEEEEECCCCCccHHHHHH
Confidence 3689999999999999974
No 478
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0054 Score=37.31 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~l~G~nGsGKSTLl~~ 46 (236)
T cd03253 29 KVAIVGPSGSGKSTILRL 46 (236)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 479
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0048 Score=38.50 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 48 ~~~I~G~nGsGKSTLl~~ 65 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRS 65 (267)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999973
No 480
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0055 Score=38.07 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRA 47 (258)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 481
>PTZ00258 GTP-binding protein; Provisional
Probab=96.12 E-value=0.015 Score=38.87 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.0
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhcc
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNK 36 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~ 36 (65)
...+++.++|.++||||+|+.+ +++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfna-Lt~~ 44 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNA-LCKQ 44 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHH-HhcC
Confidence 4457999999999999999985 3443
No 482
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0049 Score=38.00 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~ 49 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRS 49 (252)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 483
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.11 E-value=0.0059 Score=35.06 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||++...
T Consensus 5 ~~i~l~G~~GsGKstla~~ 23 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRL 23 (175)
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 4789999999999999874
No 484
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.11 E-value=0.0058 Score=36.58 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~i~G~nGsGKStLl~~ 45 (200)
T cd03217 28 VHALMGPNGSGKSTLAKT 45 (200)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 485
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.11 E-value=0.0049 Score=37.18 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++|+|||++..+
T Consensus 1 rI~i~G~pGsGKsT~a~~ 18 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKR 18 (210)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 588999999999999985
No 486
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0055 Score=38.66 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~ 52 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQN 52 (286)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 487
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0048 Score=39.81 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~ivG~sGsGKSTLl~~ 52 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKA 52 (330)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999974
No 488
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0051 Score=41.73 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~liG~NGsGKSTLl~~ 46 (530)
T PRK15064 29 RYGLIGANGCGKSTFMKI 46 (530)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 489
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0046 Score=40.46 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++||||+|||+++.-
T Consensus 30 ~vaLlGpSGaGKsTlLRi 47 (345)
T COG1118 30 LVALLGPSGAGKSTLLRI 47 (345)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367899999999999974
No 490
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0057 Score=38.10 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~ 52 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRT 52 (265)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 491
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.0051 Score=37.06 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~ 49 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLA 49 (221)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999974
No 492
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.10 E-value=0.0058 Score=36.77 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~ 43 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNL 43 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 493
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.10 E-value=0.0056 Score=38.93 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 21 ~~~l~G~NGaGKSTLl~~ 38 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRM 38 (302)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 494
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0058 Score=37.64 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~I~G~nGsGKSTLl~~ 50 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRC 50 (251)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 495
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.09 E-value=0.0053 Score=37.04 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~ 46 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLA 46 (218)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999974
No 496
>PLN02165 adenylate isopentenyltransferase
Probab=96.09 E-value=0.0078 Score=39.46 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+|...
T Consensus 45 iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVD 62 (334)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 588999999999999985
No 497
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.08 E-value=0.0053 Score=41.98 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-++.++|++|+|||+|+.-
T Consensus 377 ~~vaIvG~SGsGKSTL~~l 395 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNA 395 (588)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4578999999999999973
No 498
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0058 Score=38.15 Aligned_cols=18 Identities=22% Similarity=0.328 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 37 ~~~I~G~nGsGKSTLl~~ 54 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKL 54 (269)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 499
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.08 E-value=0.0058 Score=37.92 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~nGsGKSTLl~~ 49 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRH 49 (262)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 500
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.08 E-value=0.006 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.6
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||++...
T Consensus 2 i~l~G~~GsGKstla~~ 18 (154)
T cd00464 2 IVLIGMMGAGKTTVGRL 18 (154)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 78999999999999975
Done!