Query psy15257
Match_columns 65
No_of_seqs 176 out of 1116
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:23:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.4 2.9E-13 9.8E-18 81.3 4.3 45 9-60 10-54 (216)
2 3bc1_A RAS-related protein RAB 99.1 1.8E-10 6E-15 65.8 5.0 44 7-57 6-49 (195)
3 3q3j_B RHO-related GTP-binding 99.0 4.5E-10 1.5E-14 66.3 4.7 45 7-59 22-66 (214)
4 2f7s_A C25KG, RAS-related prot 99.0 9.6E-10 3.3E-14 64.4 5.9 43 8-57 21-63 (217)
5 3t1o_A Gliding protein MGLA; G 99.0 5.2E-10 1.8E-14 64.0 4.6 30 1-30 3-32 (198)
6 2oil_A CATX-8, RAS-related pro 99.0 7.4E-10 2.5E-14 63.8 5.2 42 5-52 18-59 (193)
7 3c5c_A RAS-like protein 12; GD 99.0 5.9E-10 2E-14 64.4 4.6 42 9-58 18-59 (187)
8 2ew1_A RAS-related protein RAB 99.0 6.4E-10 2.2E-14 65.4 4.7 45 7-58 21-65 (201)
9 2iwr_A Centaurin gamma 1; ANK 99.0 4.3E-10 1.5E-14 63.9 3.8 41 11-60 6-46 (178)
10 1oix_A RAS-related protein RAB 99.0 9.2E-10 3.1E-14 63.9 5.1 45 8-59 25-69 (191)
11 2atx_A Small GTP binding prote 99.0 5.8E-10 2E-14 64.3 4.0 44 7-58 13-56 (194)
12 2j1l_A RHO-related GTP-binding 99.0 6.3E-10 2.1E-14 65.5 4.1 41 10-58 32-72 (214)
13 2y8e_A RAB-protein 6, GH09086P 99.0 8.7E-10 3E-14 62.2 4.4 43 9-58 11-53 (179)
14 2fu5_C RAS-related protein RAB 99.0 5.1E-10 1.7E-14 63.8 3.5 38 9-52 5-42 (183)
15 1gwn_A RHO-related GTP-binding 99.0 7.7E-10 2.6E-14 65.1 4.4 44 8-59 24-67 (205)
16 1m7b_A RND3/RHOE small GTP-bin 98.9 1.1E-09 3.6E-14 62.9 4.4 43 9-59 4-46 (184)
17 3reg_A RHO-like small GTPase; 98.9 1.9E-09 6.6E-14 62.1 5.4 43 9-59 20-62 (194)
18 2hup_A RAS-related protein RAB 98.9 1.2E-09 4.1E-14 63.8 4.5 44 6-56 23-66 (201)
19 2bme_A RAB4A, RAS-related prot 98.9 2.4E-09 8.1E-14 61.0 5.7 44 8-58 6-49 (186)
20 3gj0_A GTP-binding nuclear pro 98.9 9.3E-10 3.2E-14 64.8 3.7 43 4-52 7-49 (221)
21 2fn4_A P23, RAS-related protei 98.9 1.6E-09 5.6E-14 61.1 4.6 39 8-52 5-43 (181)
22 3ihw_A Centg3; RAS, centaurin, 98.9 2.2E-09 7.5E-14 62.0 5.1 39 8-52 16-54 (184)
23 3kkq_A RAS-related protein M-R 98.9 2E-09 6.9E-14 61.3 4.9 39 8-52 14-52 (183)
24 2hxs_A RAB-26, RAS-related pro 98.9 7.7E-10 2.6E-14 62.6 2.9 37 10-52 4-40 (178)
25 2f9l_A RAB11B, member RAS onco 98.9 2E-09 6.9E-14 62.6 4.7 37 10-52 3-39 (199)
26 2il1_A RAB12; G-protein, GDP, 98.9 1.9E-09 6.7E-14 62.3 4.6 41 6-52 20-60 (192)
27 2efe_B Small GTP-binding prote 98.9 1.8E-09 6.3E-14 61.1 4.3 41 6-52 6-46 (181)
28 3tw8_B RAS-related protein RAB 98.9 2.9E-09 9.9E-14 60.1 5.1 39 8-52 5-43 (181)
29 1wms_A RAB-9, RAB9, RAS-relate 98.9 2.8E-09 9.6E-14 60.2 5.0 38 9-52 4-41 (177)
30 1z0f_A RAB14, member RAS oncog 98.9 2.4E-09 8.3E-14 60.3 4.7 40 7-52 10-49 (179)
31 2j0v_A RAC-like GTP-binding pr 98.9 1.7E-09 5.7E-14 63.2 4.1 42 10-59 7-48 (212)
32 2atv_A RERG, RAS-like estrogen 98.9 1.9E-09 6.5E-14 62.4 4.4 41 10-58 26-66 (196)
33 4bas_A ADP-ribosylation factor 98.9 1.7E-09 5.9E-14 62.2 4.1 40 7-52 12-52 (199)
34 3cpj_B GTP-binding protein YPT 98.9 1.9E-09 6.6E-14 63.7 4.4 39 8-52 9-47 (223)
35 1ky3_A GTP-binding protein YPT 98.9 1.3E-09 4.5E-14 61.6 3.4 43 9-58 5-47 (182)
36 1c1y_A RAS-related protein RAP 98.9 3E-09 1E-13 59.4 4.9 40 12-59 3-42 (167)
37 2o52_A RAS-related protein RAB 98.9 2.1E-09 7E-14 62.7 4.3 39 8-52 21-59 (200)
38 2q3h_A RAS homolog gene family 98.9 1.7E-09 5.7E-14 62.6 3.8 43 8-58 16-58 (201)
39 2a5j_A RAS-related protein RAB 98.9 3.8E-09 1.3E-13 60.9 5.2 41 6-52 15-55 (191)
40 1zbd_A Rabphilin-3A; G protein 98.9 4.6E-09 1.6E-13 60.8 5.6 39 8-52 4-42 (203)
41 1z2a_A RAS-related protein RAB 98.9 2E-09 7E-14 60.1 3.8 37 10-52 3-39 (168)
42 2zej_A Dardarin, leucine-rich 98.9 1.4E-09 4.8E-14 62.6 3.2 40 12-58 2-43 (184)
43 1z08_A RAS-related protein RAB 98.9 2.6E-09 9E-14 59.9 4.3 38 9-52 3-40 (170)
44 1vg8_A RAS-related protein RAB 98.9 2.8E-09 9.5E-14 61.7 4.5 43 9-58 5-47 (207)
45 2bcg_Y Protein YP2, GTP-bindin 98.9 2.4E-09 8.2E-14 62.3 4.2 38 9-52 5-42 (206)
46 4gzl_A RAS-related C3 botulinu 98.8 2.6E-09 8.9E-14 62.5 4.1 44 10-61 28-71 (204)
47 1mh1_A RAC1; GTP-binding, GTPa 98.8 4.4E-09 1.5E-13 59.7 4.9 40 11-58 4-43 (186)
48 2gf9_A RAS-related protein RAB 98.8 6.6E-09 2.3E-13 59.7 5.6 40 7-52 17-56 (189)
49 1kao_A RAP2A; GTP-binding prot 98.8 4.1E-09 1.4E-13 58.6 4.6 35 12-52 3-37 (167)
50 1z0j_A RAB-22, RAS-related pro 98.8 6.2E-09 2.1E-13 58.2 5.3 38 9-52 3-40 (170)
51 3cbq_A GTP-binding protein REM 98.8 2.5E-09 8.7E-14 62.3 3.8 24 8-31 19-42 (195)
52 2bov_A RAla, RAS-related prote 98.8 4.8E-09 1.6E-13 60.6 4.7 42 9-58 11-52 (206)
53 3t5g_A GTP-binding protein RHE 98.8 4.2E-09 1.4E-13 59.9 4.4 41 10-58 4-44 (181)
54 2fg5_A RAB-22B, RAS-related pr 98.8 3.6E-09 1.2E-13 61.1 4.1 40 7-52 18-57 (192)
55 1x3s_A RAS-related protein RAB 98.8 5.8E-09 2E-13 59.7 5.0 38 9-52 12-49 (195)
56 3tkl_A RAS-related protein RAB 98.8 6.9E-09 2.4E-13 59.5 5.2 39 8-52 12-50 (196)
57 1r2q_A RAS-related protein RAB 98.8 5.6E-09 1.9E-13 58.3 4.7 37 10-52 4-40 (170)
58 1zd9_A ADP-ribosylation factor 98.8 4.8E-09 1.6E-13 60.4 4.5 37 10-52 20-56 (188)
59 2g3y_A GTP-binding protein GEM 98.8 3.6E-09 1.2E-13 63.1 4.0 24 8-31 33-56 (211)
60 1z06_A RAS-related protein RAB 98.8 4.2E-09 1.4E-13 60.5 4.1 37 10-52 18-54 (189)
61 3clv_A RAB5 protein, putative; 98.8 3.8E-09 1.3E-13 60.3 3.9 45 10-61 5-49 (208)
62 3dz8_A RAS-related protein RAB 98.8 1.8E-09 6.1E-14 62.3 2.5 39 8-52 19-57 (191)
63 1ek0_A Protein (GTP-binding pr 98.8 6.3E-09 2.2E-13 58.1 4.7 36 11-52 2-37 (170)
64 2p5s_A RAS and EF-hand domain 98.8 4.8E-09 1.6E-13 60.9 4.3 39 8-52 24-62 (199)
65 2a9k_A RAS-related protein RAL 98.8 6.8E-09 2.3E-13 58.8 4.5 37 10-52 16-52 (187)
66 2erx_A GTP-binding protein DI- 98.8 8E-09 2.8E-13 57.7 4.8 36 11-52 2-37 (172)
67 3oes_A GTPase rhebl1; small GT 98.8 5.2E-09 1.8E-13 60.8 4.1 38 9-52 21-58 (201)
68 1u8z_A RAS-related protein RAL 98.8 9.4E-09 3.2E-13 57.1 4.7 36 11-52 3-38 (168)
69 2gco_A H9, RHO-related GTP-bin 98.8 4.6E-09 1.6E-13 61.1 3.5 38 9-52 22-59 (201)
70 4dsu_A GTPase KRAS, isoform 2B 98.8 9.6E-09 3.3E-13 58.4 4.8 40 11-58 3-42 (189)
71 1g16_A RAS-related protein SEC 98.8 5.6E-09 1.9E-13 58.4 3.7 36 11-52 2-37 (170)
72 3bwd_D RAC-like GTP-binding pr 98.8 1.4E-09 4.9E-14 61.6 1.2 37 10-52 6-42 (182)
73 2yc2_C IFT27, small RAB-relate 98.8 1.8E-09 6.3E-14 62.3 1.7 41 10-57 18-60 (208)
74 3con_A GTPase NRAS; structural 98.8 1.2E-08 4.2E-13 58.4 4.7 37 10-52 19-55 (190)
75 2gf0_A GTP-binding protein DI- 98.7 1E-08 3.5E-13 58.9 4.2 41 10-58 6-46 (199)
76 2fh5_B SR-beta, signal recogni 98.7 4.9E-09 1.7E-13 61.2 2.6 37 10-52 5-41 (214)
77 2ce2_X GTPase HRAS; signaling 98.7 1.3E-08 4.3E-13 56.4 4.0 35 12-52 3-37 (166)
78 2fv8_A H6, RHO-related GTP-bin 98.7 1.1E-08 3.7E-13 59.8 3.9 37 10-52 23-59 (207)
79 2g6b_A RAS-related protein RAB 98.7 2.3E-08 7.7E-13 56.5 4.9 39 8-52 6-45 (180)
80 2cjw_A GTP-binding protein GEM 98.7 1.2E-08 4.2E-13 59.2 3.8 21 11-31 5-25 (192)
81 3cph_A RAS-related protein SEC 98.7 1.4E-08 4.7E-13 59.0 3.9 39 8-52 16-54 (213)
82 3r7w_B Gtpase2, GTP-binding pr 98.7 3.9E-09 1.3E-13 67.3 1.1 45 14-65 1-52 (331)
83 3l0i_B RAS-related protein RAB 98.7 7.1E-09 2.4E-13 60.1 2.1 39 8-52 29-67 (199)
84 3th5_A RAS-related C3 botulinu 98.1 2.4E-09 8.3E-14 62.2 0.0 41 10-58 28-68 (204)
85 3c5h_A Glucocorticoid receptor 98.7 2.1E-08 7.3E-13 60.9 3.8 38 8-51 15-64 (255)
86 3q85_A GTP-binding protein REM 98.6 5E-08 1.7E-12 54.6 4.8 20 12-31 2-21 (169)
87 2nzj_A GTP-binding protein REM 98.6 3.7E-08 1.3E-12 55.3 4.0 21 11-31 3-23 (175)
88 1fzq_A ADP-ribosylation factor 98.6 1.1E-08 3.8E-13 58.7 1.6 36 10-52 14-49 (181)
89 1ksh_A ARF-like protein 2; sma 98.6 4.3E-08 1.5E-12 55.9 4.0 36 10-52 16-51 (186)
90 1nrj_B SR-beta, signal recogni 98.6 6.9E-09 2.4E-13 60.7 0.6 38 9-52 9-49 (218)
91 1r8s_A ADP-ribosylation factor 98.6 1.2E-08 4E-13 57.0 1.5 33 13-52 1-33 (164)
92 2h17_A ADP-ribosylation factor 98.6 1.4E-08 4.9E-13 58.0 1.5 38 8-52 17-54 (181)
93 2h57_A ADP-ribosylation factor 98.6 5.6E-08 1.9E-12 55.8 3.9 38 9-52 18-56 (190)
94 1zj6_A ADP-ribosylation factor 98.6 1.9E-08 6.6E-13 57.6 1.9 36 10-52 14-49 (187)
95 4djt_A GTP-binding nuclear pro 98.6 4.9E-08 1.7E-12 57.1 3.6 38 9-52 8-45 (218)
96 2wjg_A FEOB, ferrous iron tran 98.5 8.7E-08 3E-12 54.6 4.3 21 11-31 6-26 (188)
97 2wkq_A NPH1-1, RAS-related C3 98.5 7.7E-08 2.6E-12 59.1 4.3 42 11-60 154-195 (332)
98 2wji_A Ferrous iron transport 98.5 8E-08 2.7E-12 54.3 3.8 20 12-31 3-22 (165)
99 2b6h_A ADP-ribosylation factor 98.5 3.1E-08 1.1E-12 57.3 1.8 36 10-52 27-62 (192)
100 3r7w_A Gtpase1, GTP-binding pr 98.5 1.7E-07 5.7E-12 58.4 4.7 36 11-52 2-40 (307)
101 3q72_A GTP-binding protein RAD 98.5 1.3E-07 4.6E-12 52.7 3.8 20 12-31 2-21 (166)
102 2ged_A SR-beta, signal recogni 98.5 2E-08 6.7E-13 57.6 0.2 22 10-31 46-67 (193)
103 3dpu_A RAB family protein; roc 98.5 1.1E-07 3.8E-12 62.9 3.8 42 9-57 38-79 (535)
104 1upt_A ARL1, ADP-ribosylation 98.5 2E-07 6.8E-12 52.1 4.2 36 10-52 5-40 (171)
105 1f6b_A SAR1; gtpases, N-termin 98.5 5.3E-08 1.8E-12 56.7 1.8 36 10-52 23-58 (198)
106 2x77_A ADP-ribosylation factor 98.5 7E-08 2.4E-12 55.2 2.2 36 10-52 20-55 (189)
107 2lkc_A Translation initiation 98.5 1.2E-07 4.2E-12 53.4 3.2 22 10-31 6-27 (178)
108 1moz_A ARL1, ADP-ribosylation 98.4 4.4E-08 1.5E-12 55.5 0.8 36 10-52 16-51 (183)
109 2cxx_A Probable GTP-binding pr 98.4 1.1E-07 3.9E-12 54.0 1.9 32 13-50 2-33 (190)
110 1m2o_B GTP-binding protein SAR 98.4 3E-07 1E-11 53.1 3.3 36 10-52 21-56 (190)
111 1svi_A GTP-binding protein YSX 98.3 1.3E-07 4.4E-12 54.2 1.6 37 10-52 21-57 (195)
112 3t5d_A Septin-7; GTP-binding p 98.3 3.9E-07 1.3E-11 55.7 3.8 23 10-32 6-28 (274)
113 2hf9_A Probable hydrogenase ni 98.3 2.6E-07 8.7E-12 54.3 2.6 36 11-52 37-72 (226)
114 3o47_A ADP-ribosylation factor 98.3 3.1E-07 1.1E-11 57.8 3.2 35 11-52 164-198 (329)
115 3llu_A RAS-related GTP-binding 98.3 2.8E-07 9.6E-12 53.3 2.7 25 7-31 15-39 (196)
116 2qu8_A Putative nucleolar GTP- 98.3 1.1E-06 3.7E-11 52.0 4.6 22 10-31 27-48 (228)
117 3pqc_A Probable GTP-binding pr 98.3 6.1E-07 2.1E-11 51.0 3.0 24 8-31 19-42 (195)
118 2dyk_A GTP-binding protein; GT 98.2 1.7E-06 5.8E-11 47.8 4.5 19 13-31 2-20 (161)
119 3a1s_A Iron(II) transport prot 98.2 2E-06 6.9E-11 52.4 5.0 22 10-31 3-24 (258)
120 3lxx_A GTPase IMAP family memb 98.2 2E-06 6.7E-11 51.3 4.4 23 9-31 26-48 (239)
121 3b1v_A Ferrous iron uptake tra 98.2 9E-07 3.1E-11 54.6 3.0 20 12-31 3-22 (272)
122 1pui_A ENGB, probable GTP-bind 98.2 9.1E-07 3.1E-11 51.3 2.7 36 11-52 25-60 (210)
123 2gj8_A MNME, tRNA modification 98.2 1.6E-06 5.5E-11 49.3 3.7 21 11-31 3-23 (172)
124 2qag_A Septin-2, protein NEDD5 98.1 5.7E-06 1.9E-10 52.7 5.5 22 10-31 35-56 (361)
125 3lxw_A GTPase IMAP family memb 98.1 5E-06 1.7E-10 50.2 4.9 22 10-31 19-40 (247)
126 2xtp_A GTPase IMAP family memb 98.1 2.5E-06 8.5E-11 51.4 3.1 22 10-31 20-41 (260)
127 3k53_A Ferrous iron transport 98.0 2.8E-06 9.6E-11 51.7 3.0 20 12-31 3-22 (271)
128 3lvq_E ARF-GAP with SH3 domain 98.0 4.8E-06 1.6E-10 54.4 4.2 36 10-52 320-355 (497)
129 3i8s_A Ferrous iron transport 98.0 7E-06 2.4E-10 50.3 3.6 20 12-31 3-22 (274)
130 1h65_A Chloroplast outer envel 97.9 1.8E-05 6E-10 48.2 4.9 21 11-31 38-58 (270)
131 3iby_A Ferrous iron transport 97.9 1.2E-05 4.2E-10 49.0 3.8 19 13-31 2-20 (256)
132 3def_A T7I23.11 protein; chlor 97.9 1.8E-05 6.1E-10 48.0 4.4 21 11-31 35-55 (262)
133 4dhe_A Probable GTP-binding pr 97.8 4E-06 1.4E-10 48.9 0.6 22 10-31 27-48 (223)
134 3qq5_A Small GTP-binding prote 97.7 3E-05 1E-09 50.6 3.2 24 8-31 30-53 (423)
135 2aka_B Dynamin-1; fusion prote 97.6 3.8E-05 1.3E-09 46.7 3.2 22 10-31 24-45 (299)
136 2qnr_A Septin-2, protein NEDD5 97.6 2.2E-05 7.6E-10 48.9 2.0 22 10-31 16-37 (301)
137 2hjg_A GTP-binding protein ENG 97.6 4.8E-05 1.6E-09 49.3 3.6 21 11-31 174-194 (436)
138 1ega_A Protein (GTP-binding pr 97.6 0.00017 5.8E-09 44.8 5.9 21 11-31 7-27 (301)
139 2e87_A Hypothetical protein PH 97.6 8.1E-05 2.8E-09 47.0 4.2 21 11-31 166-186 (357)
140 1mky_A Probable GTP-binding pr 97.6 7.2E-05 2.5E-09 48.5 4.0 21 11-31 179-199 (439)
141 1wf3_A GTP-binding protein; GT 97.6 0.00012 4.3E-09 45.5 4.9 22 10-31 5-26 (301)
142 1wxq_A GTP-binding protein; st 97.6 0.00011 3.8E-09 47.5 4.7 19 13-31 1-19 (397)
143 2qag_C Septin-7; cell cycle, c 97.5 5.4E-05 1.9E-09 49.4 3.1 22 10-31 29-50 (418)
144 3iev_A GTP-binding protein ERA 97.5 0.00015 5.2E-09 45.1 4.8 24 8-31 6-29 (308)
145 1lnz_A SPO0B-associated GTP-bi 97.5 5.7E-05 1.9E-09 48.0 2.8 18 14-31 160-177 (342)
146 2qtf_A Protein HFLX, GTP-bindi 97.5 9.3E-05 3.2E-09 47.3 3.8 19 13-31 179-198 (364)
147 3gee_A MNME, tRNA modification 97.5 0.0001 3.4E-09 48.7 3.9 21 11-31 232-252 (476)
148 3sjy_A Translation initiation 97.5 0.00028 9.7E-09 45.2 5.8 23 9-31 5-27 (403)
149 1kgd_A CASK, peripheral plasma 97.5 7.2E-05 2.5E-09 43.0 2.6 18 14-31 7-24 (180)
150 1kk1_A EIF2gamma; initiation o 97.5 0.00016 5.6E-09 46.4 4.5 23 9-31 7-29 (410)
151 1ex7_A Guanylate kinase; subst 97.4 8.3E-05 2.8E-09 43.8 2.6 17 15-31 4-20 (186)
152 1mky_A Probable GTP-binding pr 97.4 0.00015 5E-09 47.0 3.8 19 13-31 2-20 (439)
153 1lvg_A Guanylate kinase, GMP k 97.4 8.9E-05 3E-09 43.3 2.5 19 13-31 5-23 (198)
154 2wsm_A Hydrogenase expression/ 97.4 0.00011 3.8E-09 42.8 2.8 20 12-31 30-49 (221)
155 1jal_A YCHF protein; nucleotid 97.4 0.00011 3.8E-09 47.3 2.9 19 13-31 3-21 (363)
156 1ye8_A Protein THEP1, hypothet 97.4 0.00011 3.7E-09 42.7 2.6 18 14-31 2-19 (178)
157 1s0u_A EIF-2-gamma, translatio 97.4 0.00018 6E-09 46.3 3.8 22 10-31 6-27 (408)
158 1zp6_A Hypothetical protein AT 97.4 0.00011 3.9E-09 41.9 2.7 19 13-31 10-28 (191)
159 3sop_A Neuronal-specific septi 97.4 9.7E-05 3.3E-09 45.5 2.5 20 12-31 2-21 (270)
160 3t34_A Dynamin-related protein 97.3 0.00012 4.1E-09 46.2 2.6 20 12-31 34-53 (360)
161 2dby_A GTP-binding protein; GD 97.3 0.00024 8.2E-09 45.7 3.9 19 13-31 2-20 (368)
162 4dcu_A GTP-binding protein ENG 97.3 0.0002 6.8E-09 46.6 3.5 22 10-31 193-214 (456)
163 4gp7_A Metallophosphoesterase; 97.3 0.00015 5.2E-09 41.4 2.4 17 14-30 11-27 (171)
164 3a00_A Guanylate kinase, GMP k 97.2 0.00015 5.2E-09 41.7 2.3 17 15-31 4-20 (186)
165 1s96_A Guanylate kinase, GMP k 97.2 0.00017 5.7E-09 43.2 2.4 18 14-31 18-35 (219)
166 3ney_A 55 kDa erythrocyte memb 97.2 0.00022 7.5E-09 42.4 2.9 19 13-31 20-38 (197)
167 3tr0_A Guanylate kinase, GMP k 97.2 0.00018 6.2E-09 41.4 2.4 18 14-31 9-26 (205)
168 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 42.0 2.6 19 13-31 9-27 (208)
169 1znw_A Guanylate kinase, GMP k 97.2 0.00019 6.4E-09 42.0 2.4 18 14-31 22-39 (207)
170 4dcu_A GTP-binding protein ENG 97.2 0.00018 6.2E-09 46.8 2.5 20 12-31 23-42 (456)
171 1z6g_A Guanylate kinase; struc 97.2 0.00022 7.4E-09 42.3 2.4 18 14-31 25-42 (218)
172 2hjg_A GTP-binding protein ENG 97.2 0.00022 7.4E-09 46.2 2.6 19 13-31 4-22 (436)
173 2x2e_A Dynamin-1; nitration, h 97.2 0.0003 1E-08 44.4 3.1 21 11-31 30-50 (353)
174 1udx_A The GTP-binding protein 97.1 0.00029 9.9E-09 46.0 2.6 18 14-31 159-176 (416)
175 1dar_A EF-G, elongation factor 97.0 0.00048 1.6E-08 47.2 3.5 31 1-31 1-31 (691)
176 2qor_A Guanylate kinase; phosp 97.0 0.00037 1.3E-08 40.5 2.6 19 13-31 13-31 (204)
177 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00056 1.9E-08 44.5 3.5 22 10-31 20-41 (396)
178 3izy_P Translation initiation 97.0 0.00014 4.8E-09 48.9 0.6 20 12-31 4-23 (537)
179 3tif_A Uncharacterized ABC tra 97.0 0.00037 1.3E-08 42.0 2.4 18 14-31 33-50 (235)
180 1via_A Shikimate kinase; struc 97.0 0.00043 1.5E-08 39.2 2.5 18 14-31 6-23 (175)
181 1htw_A HI0065; nucleotide-bind 97.0 0.00042 1.4E-08 39.6 2.4 18 14-31 35-52 (158)
182 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 0.0014 4.7E-08 42.5 5.1 21 11-31 19-39 (392)
183 1jwy_B Dynamin A GTPase domain 97.0 0.00034 1.2E-08 42.9 2.1 22 10-31 22-43 (315)
184 1knq_A Gluconate kinase; ALFA/ 97.0 0.00062 2.1E-08 38.4 3.0 19 13-31 9-27 (175)
185 1jbk_A CLPB protein; beta barr 97.0 0.00051 1.8E-08 38.3 2.6 19 13-31 44-62 (195)
186 2bdt_A BH3686; alpha-beta prot 96.9 0.00048 1.6E-08 39.4 2.4 18 14-31 4-21 (189)
187 3c8u_A Fructokinase; YP_612366 96.9 0.00048 1.7E-08 40.2 2.5 21 11-31 21-41 (208)
188 3kb2_A SPBC2 prophage-derived 96.9 0.0006 2E-08 38.0 2.7 18 14-31 3-20 (173)
189 1xzp_A Probable tRNA modificat 96.9 0.00013 4.4E-09 48.3 -0.1 20 12-31 243-262 (482)
190 3ec2_A DNA replication protein 96.9 0.00039 1.3E-08 39.5 1.9 19 13-31 39-57 (180)
191 2ehv_A Hypothetical protein PH 96.9 0.00055 1.9E-08 40.3 2.5 18 14-31 32-49 (251)
192 3geh_A MNME, tRNA modification 96.9 0.00041 1.4E-08 45.7 2.1 21 11-31 223-243 (462)
193 1kag_A SKI, shikimate kinase I 96.9 0.00057 2E-08 38.3 2.4 18 14-31 6-23 (173)
194 3vaa_A Shikimate kinase, SK; s 96.9 0.00068 2.3E-08 39.3 2.8 19 13-31 26-44 (199)
195 1b0u_A Histidine permease; ABC 96.9 0.00057 1.9E-08 41.8 2.5 17 15-31 35-51 (262)
196 1zun_B Sulfate adenylate trans 96.9 0.001 3.5E-08 43.0 3.8 23 9-31 21-43 (434)
197 2j41_A Guanylate kinase; GMP, 96.9 0.00059 2E-08 39.2 2.4 19 13-31 7-25 (207)
198 2cbz_A Multidrug resistance-as 96.9 0.00065 2.2E-08 40.9 2.6 18 14-31 33-50 (237)
199 1mv5_A LMRA, multidrug resista 96.9 0.00067 2.3E-08 40.9 2.7 18 14-31 30-47 (243)
200 2pcj_A ABC transporter, lipopr 96.9 0.00046 1.6E-08 41.2 1.9 17 15-31 33-49 (224)
201 1qhx_A CPT, protein (chloramph 96.9 0.0007 2.4E-08 38.2 2.6 18 14-31 5-22 (178)
202 1g7s_A Translation initiation 96.8 0.00075 2.6E-08 45.7 3.1 21 11-31 4-24 (594)
203 2ff7_A Alpha-hemolysin translo 96.8 0.00069 2.4E-08 41.1 2.6 18 14-31 37-54 (247)
204 2onk_A Molybdate/tungstate ABC 96.8 0.00064 2.2E-08 41.2 2.5 18 14-31 26-43 (240)
205 3lw7_A Adenylate kinase relate 96.8 0.00083 2.9E-08 37.1 2.7 18 14-31 3-20 (179)
206 3lnc_A Guanylate kinase, GMP k 96.8 0.00042 1.4E-08 41.0 1.5 18 14-31 29-46 (231)
207 3gfo_A Cobalt import ATP-bindi 96.8 0.00067 2.3E-08 41.9 2.5 17 15-31 37-53 (275)
208 3cnl_A YLQF, putative uncharac 96.8 0.00056 1.9E-08 41.9 2.1 19 13-31 100-118 (262)
209 2i3b_A HCR-ntpase, human cance 96.8 0.00062 2.1E-08 39.9 2.2 18 14-31 3-20 (189)
210 2qag_B Septin-6, protein NEDD5 96.8 0.00065 2.2E-08 44.6 2.5 20 12-31 42-61 (427)
211 1g6h_A High-affinity branched- 96.8 0.00068 2.3E-08 41.3 2.4 18 14-31 35-52 (257)
212 2bbw_A Adenylate kinase 4, AK4 96.8 0.00088 3E-08 40.0 2.8 19 13-31 28-46 (246)
213 3uie_A Adenylyl-sulfate kinase 96.8 0.00073 2.5E-08 39.2 2.4 19 13-31 26-44 (200)
214 4eun_A Thermoresistant glucoki 96.8 0.00075 2.6E-08 39.1 2.4 19 13-31 30-48 (200)
215 3e70_C DPA, signal recognition 96.8 0.00065 2.2E-08 43.0 2.3 20 12-31 129-148 (328)
216 2pze_A Cystic fibrosis transme 96.8 0.00086 2.9E-08 40.2 2.7 18 14-31 36-53 (229)
217 2olj_A Amino acid ABC transpor 96.8 0.00074 2.5E-08 41.5 2.5 18 14-31 52-69 (263)
218 1ji0_A ABC transporter; ATP bi 96.8 0.00074 2.5E-08 40.7 2.4 18 14-31 34-51 (240)
219 1lw7_A Transcriptional regulat 96.8 0.00084 2.9E-08 42.4 2.7 20 12-31 170-189 (365)
220 2ihy_A ABC transporter, ATP-bi 96.8 0.00086 2.9E-08 41.5 2.7 18 14-31 49-66 (279)
221 4g1u_C Hemin import ATP-bindin 96.8 0.00077 2.6E-08 41.4 2.4 17 15-31 40-56 (266)
222 2eyu_A Twitching motility prot 96.8 0.00076 2.6E-08 41.3 2.4 19 13-31 26-44 (261)
223 1sgw_A Putative ABC transporte 96.8 0.00081 2.8E-08 40.2 2.5 17 15-31 38-54 (214)
224 3trf_A Shikimate kinase, SK; a 96.8 0.001 3.5E-08 37.8 2.8 19 13-31 6-24 (185)
225 2ghi_A Transport protein; mult 96.7 0.00088 3E-08 40.9 2.6 18 14-31 48-65 (260)
226 2ixe_A Antigen peptide transpo 96.7 0.00089 3.1E-08 41.1 2.6 18 14-31 47-64 (271)
227 1ixz_A ATP-dependent metallopr 96.7 0.00084 2.9E-08 40.1 2.5 17 15-31 52-68 (254)
228 4a74_A DNA repair and recombin 96.7 0.00064 2.2E-08 39.5 1.9 18 14-31 27-44 (231)
229 3b85_A Phosphate starvation-in 96.7 0.00079 2.7E-08 40.0 2.3 18 14-31 24-41 (208)
230 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00094 3.2E-08 40.5 2.6 18 14-31 31-48 (250)
231 2zu0_C Probable ATP-dependent 96.7 0.00096 3.3E-08 40.9 2.7 18 14-31 48-65 (267)
232 2p65_A Hypothetical protein PF 96.7 0.0007 2.4E-08 37.8 1.9 19 13-31 44-62 (187)
233 2qi9_C Vitamin B12 import ATP- 96.7 0.00099 3.4E-08 40.6 2.7 18 14-31 28-45 (249)
234 1vpl_A ABC transporter, ATP-bi 96.7 0.00093 3.2E-08 40.8 2.5 18 14-31 43-60 (256)
235 4a9a_A Ribosome-interacting GT 96.7 0.0026 9E-08 41.0 4.7 22 13-35 73-94 (376)
236 3bos_A Putative DNA replicatio 96.7 0.0011 3.6E-08 38.5 2.6 19 13-31 53-71 (242)
237 2yz2_A Putative ABC transporte 96.7 0.00096 3.3E-08 40.8 2.4 18 14-31 35-52 (266)
238 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.8E-08 38.6 2.6 19 13-31 6-24 (227)
239 2pjz_A Hypothetical protein ST 96.7 0.0011 3.9E-08 40.6 2.7 18 14-31 32-49 (263)
240 1rj9_A FTSY, signal recognitio 96.7 0.001 3.5E-08 41.6 2.6 19 13-31 103-121 (304)
241 1z47_A CYSA, putative ABC-tran 96.7 0.00096 3.3E-08 42.8 2.4 17 15-31 44-60 (355)
242 2qpt_A EH domain-containing pr 96.7 0.0012 4.2E-08 44.2 3.0 22 10-31 63-84 (550)
243 3asz_A Uridine kinase; cytidin 96.6 0.001 3.5E-08 38.6 2.3 19 13-31 7-25 (211)
244 1ly1_A Polynucleotide kinase; 96.6 0.0016 5.3E-08 36.5 3.0 19 13-31 3-21 (181)
245 2kjq_A DNAA-related protein; s 96.6 0.00078 2.7E-08 37.9 1.8 18 14-31 38-55 (149)
246 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 3.9E-08 38.2 2.5 19 13-31 19-37 (202)
247 2it1_A 362AA long hypothetical 96.6 0.001 3.5E-08 42.7 2.5 17 15-31 32-48 (362)
248 2yyz_A Sugar ABC transporter, 96.6 0.00099 3.4E-08 42.7 2.4 17 15-31 32-48 (359)
249 3fvq_A Fe(3+) IONS import ATP- 96.6 0.00077 2.6E-08 43.3 1.9 17 15-31 33-49 (359)
250 2nq2_C Hypothetical ABC transp 96.6 0.0012 4.1E-08 40.2 2.6 18 14-31 33-50 (253)
251 1v43_A Sugar-binding transport 96.6 0.0011 3.7E-08 42.7 2.5 17 15-31 40-56 (372)
252 1g29_1 MALK, maltose transport 96.6 0.001 3.6E-08 42.7 2.4 17 15-31 32-48 (372)
253 3fb4_A Adenylate kinase; psych 96.6 0.0013 4.6E-08 38.2 2.7 18 14-31 2-19 (216)
254 3rlf_A Maltose/maltodextrin im 96.6 0.0011 3.7E-08 43.0 2.5 17 15-31 32-48 (381)
255 2jaq_A Deoxyguanosine kinase; 96.6 0.0014 4.8E-08 37.4 2.7 18 14-31 2-19 (205)
256 3dl0_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 38.2 2.7 18 14-31 2-19 (216)
257 2w58_A DNAI, primosome compone 96.6 0.0013 4.4E-08 37.8 2.6 19 13-31 55-73 (202)
258 1kht_A Adenylate kinase; phosp 96.6 0.0015 5.1E-08 36.9 2.7 19 13-31 4-22 (192)
259 1nks_A Adenylate kinase; therm 96.6 0.0013 4.6E-08 37.1 2.5 18 14-31 3-20 (194)
260 2chg_A Replication factor C sm 96.6 0.0014 4.7E-08 37.3 2.6 17 15-31 41-57 (226)
261 3d31_A Sulfate/molybdate ABC t 96.6 0.0009 3.1E-08 42.7 1.9 18 14-31 28-45 (348)
262 1njg_A DNA polymerase III subu 96.6 0.0014 4.6E-08 37.6 2.5 18 14-31 47-64 (250)
263 3nh6_A ATP-binding cassette SU 96.6 0.00097 3.3E-08 41.9 2.0 18 14-31 82-99 (306)
264 3j2k_7 ERF3, eukaryotic polype 96.6 0.0045 1.5E-07 40.3 5.2 23 9-31 14-36 (439)
265 1iy2_A ATP-dependent metallopr 96.6 0.0013 4.4E-08 39.9 2.5 17 15-31 76-92 (278)
266 2v9p_A Replication protein E1; 96.6 0.0013 4.6E-08 41.3 2.6 18 14-31 128-145 (305)
267 3b9q_A Chloroplast SRP recepto 96.6 0.0013 4.6E-08 41.0 2.6 19 13-31 101-119 (302)
268 2cdn_A Adenylate kinase; phosp 96.6 0.0019 6.3E-08 37.3 3.0 22 10-31 18-39 (201)
269 2vp4_A Deoxynucleoside kinase; 96.6 0.002 6.9E-08 38.2 3.2 21 11-31 19-39 (230)
270 1gvn_B Zeta; postsegregational 96.6 0.0019 6.6E-08 39.8 3.2 20 12-31 33-52 (287)
271 3kta_A Chromosome segregation 96.5 0.001 3.6E-08 37.7 1.9 18 14-31 28-45 (182)
272 2yv5_A YJEQ protein; hydrolase 96.5 0.0013 4.5E-08 40.8 2.4 18 14-31 167-184 (302)
273 1lv7_A FTSH; alpha/beta domain 96.5 0.0015 5.2E-08 39.0 2.6 19 13-31 46-64 (257)
274 1u0l_A Probable GTPase ENGC; p 96.5 0.0014 4.8E-08 40.6 2.4 18 14-31 171-188 (301)
275 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0016 5.6E-08 37.6 2.6 18 14-31 25-42 (235)
276 1in4_A RUVB, holliday junction 96.5 0.0014 4.7E-08 41.0 2.4 18 14-31 53-70 (334)
277 2x8a_A Nuclear valosin-contain 96.5 0.0014 4.8E-08 40.2 2.3 17 15-31 47-63 (274)
278 3iij_A Coilin-interacting nucl 96.5 0.0019 6.4E-08 36.6 2.7 19 13-31 12-30 (180)
279 1wb1_A Translation elongation 96.5 0.0033 1.1E-07 41.4 4.2 22 10-31 17-38 (482)
280 2yvu_A Probable adenylyl-sulfa 96.5 0.0029 9.9E-08 36.0 3.5 21 11-31 12-32 (186)
281 3p26_A Elongation factor 1 alp 96.5 0.0013 4.3E-08 43.2 2.1 21 11-31 32-52 (483)
282 1np6_A Molybdopterin-guanine d 96.5 0.0018 6.2E-08 37.5 2.6 19 13-31 7-25 (174)
283 2www_A Methylmalonic aciduria 96.5 0.0029 9.9E-08 40.0 3.7 20 12-31 74-93 (349)
284 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.7E-08 40.8 2.1 18 14-31 66-83 (290)
285 3izq_1 HBS1P, elongation facto 96.4 0.002 6.8E-08 43.7 3.0 22 10-31 165-186 (611)
286 3gd7_A Fusion complex of cysti 96.4 0.0014 4.8E-08 42.4 2.1 18 14-31 49-66 (390)
287 2if2_A Dephospho-COA kinase; a 96.4 0.0015 5.2E-08 37.6 2.1 19 13-31 2-20 (204)
288 2rcn_A Probable GTPase ENGC; Y 96.4 0.0016 5.5E-08 41.8 2.4 18 14-31 217-234 (358)
289 3cm0_A Adenylate kinase; ATP-b 96.4 0.0029 1E-07 35.8 3.2 20 12-31 4-23 (186)
290 1jjv_A Dephospho-COA kinase; P 96.4 0.0023 8E-08 36.9 2.8 19 13-31 3-21 (206)
291 2ze6_A Isopentenyl transferase 96.4 0.002 6.8E-08 39.0 2.6 18 14-31 3-20 (253)
292 3aez_A Pantothenate kinase; tr 96.4 0.0018 6.1E-08 40.6 2.4 21 11-31 89-109 (312)
293 1oxx_K GLCV, glucose, ABC tran 96.4 0.00093 3.2E-08 42.7 1.2 18 14-31 33-50 (353)
294 3h4m_A Proteasome-activating n 96.4 0.0019 6.6E-08 38.9 2.4 19 13-31 52-70 (285)
295 3n70_A Transport activator; si 96.4 0.002 7E-08 35.6 2.4 19 13-31 25-43 (145)
296 3tui_C Methionine import ATP-b 96.4 0.0019 6.5E-08 41.6 2.5 16 15-30 57-72 (366)
297 1odf_A YGR205W, hypothetical 3 96.4 0.0034 1.2E-07 39.0 3.5 21 11-31 30-50 (290)
298 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0021 7.3E-08 38.0 2.6 19 13-31 40-58 (262)
299 2rhm_A Putative kinase; P-loop 96.4 0.0022 7.6E-08 36.3 2.5 19 13-31 6-24 (193)
300 3p32_A Probable GTPase RV1496/ 96.4 0.0038 1.3E-07 39.4 3.8 21 11-31 78-98 (355)
301 1puj_A YLQF, conserved hypothe 96.4 0.0022 7.5E-08 39.6 2.7 21 11-31 119-139 (282)
302 3tr5_A RF-3, peptide chain rel 96.3 0.0035 1.2E-07 41.9 3.7 22 10-31 11-32 (528)
303 2c78_A Elongation factor TU-A; 96.3 0.0027 9.2E-08 40.7 3.0 22 10-31 9-30 (405)
304 1jny_A EF-1-alpha, elongation 96.3 0.0021 7.1E-08 41.7 2.5 21 11-31 5-25 (435)
305 2og2_A Putative signal recogni 96.3 0.0023 7.7E-08 41.1 2.6 19 13-31 158-176 (359)
306 2f1r_A Molybdopterin-guanine d 96.3 0.001 3.4E-08 38.5 0.9 18 14-31 4-21 (171)
307 2j69_A Bacterial dynamin-like 96.3 0.0022 7.7E-08 44.0 2.7 21 11-31 68-88 (695)
308 3tlx_A Adenylate kinase 2; str 96.3 0.0032 1.1E-07 37.7 3.1 21 11-31 28-48 (243)
309 1l8q_A Chromosomal replication 96.3 0.0023 7.9E-08 39.4 2.5 18 14-31 39-56 (324)
310 4e22_A Cytidylate kinase; P-lo 96.3 0.0026 9E-08 38.3 2.7 19 13-31 28-46 (252)
311 1y63_A LMAJ004144AAA protein; 96.3 0.0031 1.1E-07 36.1 2.9 19 13-31 11-29 (184)
312 3jvv_A Twitching mobility prot 96.3 0.0021 7.3E-08 41.0 2.4 18 14-31 125-142 (356)
313 2qen_A Walker-type ATPase; unk 96.3 0.0025 8.5E-08 38.9 2.6 18 14-31 33-50 (350)
314 1ukz_A Uridylate kinase; trans 96.3 0.0044 1.5E-07 35.6 3.5 21 11-31 14-34 (203)
315 1n0w_A DNA repair protein RAD5 96.3 0.0027 9.1E-08 37.2 2.6 18 14-31 26-43 (243)
316 3tqc_A Pantothenate kinase; bi 96.3 0.0045 1.6E-07 39.1 3.8 22 10-31 90-111 (321)
317 1ofh_A ATP-dependent HSL prote 96.3 0.0026 8.9E-08 38.4 2.6 19 13-31 51-69 (310)
318 2qt1_A Nicotinamide riboside k 96.3 0.0031 1.1E-07 36.5 2.8 20 12-31 21-40 (207)
319 3b9p_A CG5977-PA, isoform A; A 96.3 0.0024 8.2E-08 38.7 2.4 19 13-31 55-73 (297)
320 3mca_A HBS1, elongation factor 96.3 0.0032 1.1E-07 42.5 3.2 22 10-31 175-196 (592)
321 3a8t_A Adenylate isopentenyltr 96.2 0.0026 8.8E-08 40.7 2.6 18 14-31 42-59 (339)
322 2plr_A DTMP kinase, probable t 96.2 0.0037 1.3E-07 35.8 3.0 19 13-31 5-23 (213)
323 1d2e_A Elongation factor TU (E 96.2 0.0031 1.1E-07 40.4 3.0 20 12-31 3-22 (397)
324 2ewv_A Twitching motility prot 96.2 0.0026 8.9E-08 40.6 2.6 19 13-31 137-155 (372)
325 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0033 1.1E-07 40.2 3.1 22 10-31 31-52 (362)
326 1uf9_A TT1252 protein; P-loop, 96.2 0.0029 9.9E-08 36.1 2.6 20 12-31 8-27 (203)
327 2qby_A CDC6 homolog 1, cell di 96.2 0.0022 7.4E-08 39.6 2.1 19 13-31 46-64 (386)
328 2cvh_A DNA repair and recombin 96.2 0.0029 1E-07 36.5 2.6 18 14-31 22-39 (220)
329 1d2n_A N-ethylmaleimide-sensit 96.2 0.0045 1.6E-07 37.2 3.4 20 12-31 64-83 (272)
330 2jeo_A Uridine-cytidine kinase 96.2 0.0036 1.2E-07 37.3 2.9 19 13-31 26-44 (245)
331 2dy1_A Elongation factor G; tr 96.2 0.0025 8.7E-08 43.5 2.4 22 10-31 7-28 (665)
332 3exa_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 40.2 2.6 18 14-31 5-22 (322)
333 3syl_A Protein CBBX; photosynt 96.2 0.0031 1.1E-07 38.3 2.6 20 12-31 67-86 (309)
334 2gza_A Type IV secretion syste 96.2 0.0031 1.1E-07 40.0 2.6 19 13-31 176-194 (361)
335 1n0u_A EF-2, elongation factor 96.2 0.01 3.5E-07 41.6 5.3 22 10-31 17-38 (842)
336 1yrb_A ATP(GTP)binding protein 96.1 0.0081 2.8E-07 35.6 4.3 22 10-31 12-33 (262)
337 2fna_A Conserved hypothetical 96.1 0.0021 7E-08 39.3 1.7 18 14-31 32-49 (357)
338 2qgz_A Helicase loader, putati 96.1 0.0036 1.2E-07 39.0 2.8 19 13-31 153-171 (308)
339 2p5t_B PEZT; postsegregational 96.1 0.0039 1.3E-07 37.5 2.8 21 11-31 31-51 (253)
340 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0029 9.8E-08 35.6 2.1 17 15-31 26-42 (149)
341 1tev_A UMP-CMP kinase; ploop, 96.1 0.0047 1.6E-07 34.9 3.0 19 13-31 4-22 (196)
342 1fnn_A CDC6P, cell division co 96.1 0.0034 1.2E-07 39.0 2.6 18 14-31 46-63 (389)
343 2wwf_A Thymidilate kinase, put 96.1 0.0043 1.5E-07 35.7 2.9 20 12-31 10-29 (212)
344 1aky_A Adenylate kinase; ATP:A 96.1 0.004 1.4E-07 36.4 2.7 19 13-31 5-23 (220)
345 2yhs_A FTSY, cell division pro 96.1 0.0034 1.2E-07 42.1 2.6 19 13-31 294-312 (503)
346 3pfi_A Holliday junction ATP-d 96.1 0.0035 1.2E-07 38.6 2.6 18 14-31 57-74 (338)
347 4fcw_A Chaperone protein CLPB; 96.1 0.0052 1.8E-07 37.3 3.3 19 13-31 48-66 (311)
348 1zd8_A GTP:AMP phosphotransfer 96.1 0.0032 1.1E-07 37.0 2.2 19 13-31 8-26 (227)
349 2v54_A DTMP kinase, thymidylat 96.1 0.0043 1.5E-07 35.5 2.8 19 13-31 5-23 (204)
350 3t15_A Ribulose bisphosphate c 96.1 0.0028 9.7E-08 39.0 2.1 19 13-31 37-55 (293)
351 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0049 1.7E-07 38.8 3.2 18 14-31 173-190 (330)
352 1f60_A Elongation factor EEF1A 96.1 0.0045 1.6E-07 40.4 3.1 21 11-31 6-26 (458)
353 1vma_A Cell division protein F 96.1 0.003 1E-07 39.6 2.2 19 13-31 105-123 (306)
354 1sxj_E Activator 1 40 kDa subu 96.1 0.0034 1.2E-07 38.8 2.4 17 15-31 39-55 (354)
355 2pt5_A Shikimate kinase, SK; a 96.1 0.0044 1.5E-07 34.5 2.7 18 14-31 2-19 (168)
356 1cr0_A DNA primase/helicase; R 96.1 0.0027 9.2E-08 38.7 1.9 18 14-31 37-54 (296)
357 3co5_A Putative two-component 96.1 0.0022 7.6E-08 35.5 1.4 19 13-31 28-46 (143)
358 3cf0_A Transitional endoplasmi 96.1 0.0034 1.2E-07 38.6 2.4 19 13-31 50-68 (301)
359 1e4v_A Adenylate kinase; trans 96.1 0.0033 1.1E-07 36.7 2.2 18 14-31 2-19 (214)
360 2qmh_A HPR kinase/phosphorylas 96.1 0.0038 1.3E-07 37.6 2.5 19 13-31 35-53 (205)
361 1bif_A 6-phosphofructo-2-kinas 96.0 0.0047 1.6E-07 40.3 3.1 21 11-31 38-58 (469)
362 2v1u_A Cell division control p 96.0 0.0028 9.5E-08 39.2 1.9 19 13-31 45-63 (387)
363 1t9h_A YLOQ, probable GTPase E 96.0 0.0011 3.9E-08 41.7 0.1 19 13-31 174-192 (307)
364 1zo1_I IF2, translation initia 96.0 0.0018 6.3E-08 43.1 1.2 21 11-31 3-23 (501)
365 2qm8_A GTPase/ATPase; G protei 96.0 0.0044 1.5E-07 39.1 2.8 20 12-31 55-74 (337)
366 1tq4_A IIGP1, interferon-induc 96.0 0.0034 1.2E-07 40.9 2.4 19 13-31 70-88 (413)
367 2z0h_A DTMP kinase, thymidylat 96.0 0.0046 1.6E-07 35.1 2.7 18 14-31 2-19 (197)
368 3sr0_A Adenylate kinase; phosp 96.0 0.0045 1.5E-07 36.7 2.7 18 14-31 2-19 (206)
369 3d3q_A TRNA delta(2)-isopenten 96.0 0.0048 1.6E-07 39.4 3.0 19 13-31 8-26 (340)
370 2xtz_A Guanine nucleotide-bind 96.0 0.0075 2.6E-07 38.5 3.8 23 9-31 6-28 (354)
371 2r8r_A Sensor protein; KDPD, P 96.0 0.0056 1.9E-07 37.2 3.1 21 11-31 5-25 (228)
372 2bjv_A PSP operon transcriptio 96.0 0.0043 1.5E-07 37.2 2.6 19 13-31 30-48 (265)
373 1zak_A Adenylate kinase; ATP:A 96.0 0.0029 9.8E-08 37.0 1.8 19 13-31 6-24 (222)
374 3foz_A TRNA delta(2)-isopenten 96.0 0.0057 2E-07 38.9 3.2 19 13-31 11-29 (316)
375 1xjc_A MOBB protein homolog; s 96.0 0.0047 1.6E-07 35.8 2.6 19 13-31 5-23 (169)
376 2xb4_A Adenylate kinase; ATP-b 96.0 0.0049 1.7E-07 36.3 2.7 18 14-31 2-19 (223)
377 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.003 1E-07 41.6 1.9 17 14-30 140-156 (460)
378 1um8_A ATP-dependent CLP prote 95.9 0.0045 1.5E-07 39.0 2.6 19 13-31 73-91 (376)
379 2obl_A ESCN; ATPase, hydrolase 95.9 0.0036 1.2E-07 39.8 2.2 18 14-31 73-90 (347)
380 4a82_A Cystic fibrosis transme 95.9 0.0041 1.4E-07 41.6 2.5 17 14-30 369-385 (578)
381 2grj_A Dephospho-COA kinase; T 95.9 0.0065 2.2E-07 35.6 3.1 29 3-31 3-31 (192)
382 3b5x_A Lipid A export ATP-bind 95.9 0.0043 1.5E-07 41.5 2.6 18 14-31 371-388 (582)
383 1e6c_A Shikimate kinase; phosp 95.9 0.0051 1.8E-07 34.3 2.6 18 14-31 4-21 (173)
384 3kl4_A SRP54, signal recogniti 95.9 0.0035 1.2E-07 41.2 2.1 20 12-31 97-116 (433)
385 2dpy_A FLII, flagellum-specifi 95.9 0.0037 1.3E-07 40.9 2.2 18 14-31 159-176 (438)
386 1rz3_A Hypothetical protein rb 95.9 0.0046 1.6E-07 35.8 2.4 20 12-31 22-41 (201)
387 3uk6_A RUVB-like 2; hexameric 95.9 0.0036 1.2E-07 38.9 2.0 19 13-31 71-89 (368)
388 3szr_A Interferon-induced GTP- 95.9 0.0026 8.8E-08 43.0 1.4 18 14-31 47-64 (608)
389 1qf9_A UMP/CMP kinase, protein 95.9 0.006 2.1E-07 34.3 2.8 19 13-31 7-25 (194)
390 3b60_A Lipid A export ATP-bind 95.9 0.0037 1.3E-07 41.8 2.2 18 14-31 371-388 (582)
391 1p9r_A General secretion pathw 95.9 0.0043 1.5E-07 40.4 2.4 18 14-31 169-186 (418)
392 3pxg_A Negative regulator of g 95.9 0.0045 1.5E-07 40.5 2.5 19 13-31 202-220 (468)
393 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0049 1.7E-07 41.2 2.7 18 14-31 49-66 (538)
394 3eie_A Vacuolar protein sortin 95.9 0.0047 1.6E-07 38.3 2.5 19 13-31 52-70 (322)
395 3crm_A TRNA delta(2)-isopenten 95.9 0.0063 2.2E-07 38.6 3.1 19 13-31 6-24 (323)
396 2elf_A Protein translation elo 95.9 0.0034 1.2E-07 40.1 1.9 18 14-31 23-40 (370)
397 2xex_A Elongation factor G; GT 95.9 0.0054 1.8E-07 42.1 2.9 23 9-31 7-29 (693)
398 1sq5_A Pantothenate kinase; P- 95.9 0.0054 1.9E-07 38.0 2.7 20 12-31 80-99 (308)
399 1uj2_A Uridine-cytidine kinase 95.9 0.0065 2.2E-07 36.4 3.0 21 11-31 21-41 (252)
400 2oap_1 GSPE-2, type II secreti 95.9 0.0058 2E-07 40.7 3.0 18 14-31 262-279 (511)
401 1ak2_A Adenylate kinase isoenz 95.9 0.0061 2.1E-07 36.0 2.8 20 12-31 16-35 (233)
402 2dr3_A UPF0273 protein PH0284; 95.9 0.0043 1.5E-07 36.3 2.1 18 14-31 25-42 (247)
403 2px0_A Flagellar biosynthesis 95.9 0.0045 1.5E-07 38.5 2.3 19 13-31 106-124 (296)
404 2c95_A Adenylate kinase 1; tra 95.9 0.005 1.7E-07 34.9 2.3 19 13-31 10-28 (196)
405 2qby_B CDC6 homolog 3, cell di 95.8 0.0041 1.4E-07 38.7 2.1 18 14-31 47-64 (384)
406 2bwj_A Adenylate kinase 5; pho 95.8 0.0049 1.7E-07 35.0 2.2 19 13-31 13-31 (199)
407 3nwj_A ATSK2; P loop, shikimat 95.8 0.0046 1.6E-07 37.7 2.2 19 13-31 49-67 (250)
408 3hws_A ATP-dependent CLP prote 95.8 0.0054 1.9E-07 38.5 2.6 20 12-31 51-70 (363)
409 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0048 1.6E-07 39.2 2.4 17 15-31 26-42 (365)
410 1gtv_A TMK, thymidylate kinase 95.8 0.0016 5.4E-08 37.6 0.1 18 14-31 2-19 (214)
411 2pez_A Bifunctional 3'-phospho 95.8 0.0073 2.5E-07 34.1 2.9 19 13-31 6-24 (179)
412 2yl4_A ATP-binding cassette SU 95.8 0.0041 1.4E-07 41.7 2.1 18 14-31 372-389 (595)
413 1sxj_D Activator 1 41 kDa subu 95.8 0.0056 1.9E-07 37.6 2.6 17 15-31 61-77 (353)
414 2pbr_A DTMP kinase, thymidylat 95.8 0.0066 2.3E-07 34.3 2.7 18 14-31 2-19 (195)
415 1sxj_C Activator 1 40 kDa subu 95.8 0.0051 1.8E-07 38.2 2.4 17 15-31 49-65 (340)
416 2h5e_A Peptide chain release f 95.8 0.0043 1.5E-07 41.4 2.1 22 10-31 11-32 (529)
417 2a5y_B CED-4; apoptosis; HET: 95.8 0.0099 3.4E-07 39.4 3.8 19 13-31 153-171 (549)
418 1hqc_A RUVB; extended AAA-ATPa 95.8 0.0036 1.2E-07 38.2 1.6 19 13-31 39-57 (324)
419 3euj_A Chromosome partition pr 95.8 0.0053 1.8E-07 40.8 2.5 18 14-31 31-48 (483)
420 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0055 1.9E-07 38.2 2.4 19 13-31 46-64 (322)
421 3qf4_A ABC transporter, ATP-bi 95.8 0.0056 1.9E-07 41.1 2.6 18 14-31 371-388 (587)
422 3qf4_B Uncharacterized ABC tra 95.7 0.0049 1.7E-07 41.5 2.3 18 14-31 383-400 (598)
423 2r44_A Uncharacterized protein 95.7 0.0047 1.6E-07 38.1 2.0 18 14-31 48-65 (331)
424 2r62_A Cell division protease 95.7 0.0022 7.5E-08 38.4 0.5 18 14-31 46-63 (268)
425 3r20_A Cytidylate kinase; stru 95.7 0.0071 2.4E-07 36.7 2.7 20 12-31 9-28 (233)
426 2iyv_A Shikimate kinase, SK; t 95.7 0.0069 2.4E-07 34.3 2.6 18 14-31 4-21 (184)
427 3ohm_A Guanine nucleotide-bind 95.7 0.0088 3E-07 37.9 3.3 22 10-31 5-26 (327)
428 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0084 2.9E-07 36.2 3.0 19 13-31 5-23 (260)
429 2z4s_A Chromosomal replication 95.7 0.0055 1.9E-07 39.8 2.4 18 14-31 132-149 (440)
430 3d8b_A Fidgetin-like protein 1 95.7 0.0064 2.2E-07 38.3 2.5 19 13-31 118-136 (357)
431 1nlf_A Regulatory protein REPA 95.7 0.0046 1.6E-07 37.5 1.8 18 14-31 32-49 (279)
432 1m7g_A Adenylylsulfate kinase; 95.7 0.0072 2.5E-07 35.2 2.6 19 13-31 26-44 (211)
433 3m6a_A ATP-dependent protease 95.6 0.0058 2E-07 40.8 2.3 18 14-31 110-127 (543)
434 1nn5_A Similar to deoxythymidy 95.6 0.0062 2.1E-07 35.0 2.2 19 13-31 10-28 (215)
435 1ltq_A Polynucleotide kinase; 95.6 0.0074 2.5E-07 36.7 2.6 19 13-31 3-21 (301)
436 1vht_A Dephospho-COA kinase; s 95.6 0.0098 3.4E-07 34.6 3.0 19 13-31 5-23 (218)
437 3dm5_A SRP54, signal recogniti 95.6 0.0064 2.2E-07 40.1 2.4 20 12-31 100-119 (443)
438 2vli_A Antibiotic resistance p 95.6 0.0054 1.8E-07 34.5 1.8 19 13-31 6-24 (183)
439 3qks_A DNA double-strand break 95.6 0.0063 2.1E-07 35.7 2.1 17 15-31 26-42 (203)
440 3ux8_A Excinuclease ABC, A sub 95.6 0.0069 2.4E-07 41.1 2.5 16 15-30 351-366 (670)
441 3vfd_A Spastin; ATPase, microt 95.6 0.0072 2.5E-07 38.3 2.5 19 13-31 149-167 (389)
442 1z6t_A APAF-1, apoptotic prote 95.6 0.007 2.4E-07 39.9 2.5 19 13-31 148-166 (591)
443 4fid_A G protein alpha subunit 95.6 0.0075 2.6E-07 38.5 2.5 22 10-31 3-24 (340)
444 1g8p_A Magnesium-chelatase 38 95.6 0.0042 1.5E-07 38.2 1.3 18 14-31 47-64 (350)
445 2qp9_X Vacuolar protein sortin 95.6 0.0077 2.6E-07 38.0 2.5 19 13-31 85-103 (355)
446 3j16_B RLI1P; ribosome recycli 95.5 0.007 2.4E-07 41.1 2.5 18 14-31 105-122 (608)
447 3be4_A Adenylate kinase; malar 95.5 0.0072 2.5E-07 35.4 2.2 19 13-31 6-24 (217)
448 3bk7_A ABC transporter ATP-bin 95.5 0.0085 2.9E-07 40.7 2.7 18 14-31 119-136 (607)
449 3ozx_A RNAse L inhibitor; ATP 95.5 0.0079 2.7E-07 40.3 2.5 18 14-31 27-44 (538)
450 2f6r_A COA synthase, bifunctio 95.5 0.011 3.8E-07 36.2 3.0 21 11-31 74-94 (281)
451 4eaq_A DTMP kinase, thymidylat 95.5 0.014 4.8E-07 34.8 3.3 20 12-31 26-45 (229)
452 3umf_A Adenylate kinase; rossm 95.5 0.015 5E-07 34.9 3.4 18 14-31 31-48 (217)
453 3pvs_A Replication-associated 95.4 0.0081 2.8E-07 39.3 2.4 18 14-31 52-69 (447)
454 1r5b_A Eukaryotic peptide chai 95.4 0.0068 2.3E-07 39.7 2.0 22 10-31 41-62 (467)
455 3ux8_A Excinuclease ABC, A sub 95.4 0.0085 2.9E-07 40.7 2.5 16 14-29 46-61 (670)
456 3eph_A TRNA isopentenyltransfe 95.4 0.0069 2.4E-07 39.7 2.0 18 14-31 4-21 (409)
457 1nij_A Hypothetical protein YJ 95.4 0.0053 1.8E-07 38.2 1.4 18 14-31 6-23 (318)
458 3qkt_A DNA double-strand break 95.4 0.0075 2.5E-07 37.8 2.1 16 16-31 27-42 (339)
459 1p5z_B DCK, deoxycytidine kina 95.4 0.012 4.1E-07 35.3 2.9 21 11-31 23-43 (263)
460 1jr3_A DNA polymerase III subu 95.4 0.0081 2.8E-07 37.2 2.2 18 14-31 40-57 (373)
461 1svm_A Large T antigen; AAA+ f 95.4 0.0089 3.1E-07 38.5 2.4 19 13-31 170-188 (377)
462 1cip_A Protein (guanine nucleo 95.4 0.013 4.5E-07 37.3 3.2 22 10-31 30-51 (353)
463 3ozx_A RNAse L inhibitor; ATP 95.3 0.01 3.6E-07 39.7 2.7 18 14-31 296-313 (538)
464 1yqt_A RNAse L inhibitor; ATP- 95.3 0.011 3.7E-07 39.5 2.7 18 14-31 314-331 (538)
465 1iqp_A RFCS; clamp loader, ext 95.3 0.011 3.8E-07 35.8 2.6 18 14-31 48-65 (327)
466 4b4t_K 26S protease regulatory 95.3 0.011 3.7E-07 38.8 2.6 19 13-31 207-225 (428)
467 3bk7_A ABC transporter ATP-bin 95.3 0.011 3.8E-07 40.1 2.7 18 14-31 384-401 (607)
468 1e69_A Chromosome segregation 95.3 0.0074 2.5E-07 37.5 1.7 18 14-31 26-43 (322)
469 2zan_A Vacuolar protein sortin 95.3 0.011 3.7E-07 38.4 2.6 19 13-31 168-186 (444)
470 1zuh_A Shikimate kinase; alpha 95.2 0.015 5E-07 32.5 2.8 19 13-31 8-26 (168)
471 1sxj_A Activator 1 95 kDa subu 95.2 0.011 3.8E-07 39.0 2.6 19 13-31 78-96 (516)
472 3zvl_A Bifunctional polynucleo 95.2 0.011 3.8E-07 38.1 2.6 19 13-31 259-277 (416)
473 1ojl_A Transcriptional regulat 95.2 0.012 4E-07 36.5 2.5 19 13-31 26-44 (304)
474 1sxj_B Activator 1 37 kDa subu 95.2 0.01 3.5E-07 35.9 2.2 17 15-31 45-61 (323)
475 2dhr_A FTSH; AAA+ protein, hex 95.2 0.01 3.5E-07 39.5 2.4 18 14-31 66-83 (499)
476 1tf7_A KAIC; homohexamer, hexa 95.2 0.0083 2.8E-07 39.7 1.9 18 14-31 41-58 (525)
477 1w5s_A Origin recognition comp 95.2 0.0084 2.9E-07 37.5 1.9 18 14-31 52-71 (412)
478 3tqf_A HPR(Ser) kinase; transf 95.2 0.0092 3.1E-07 35.3 1.8 18 14-31 18-35 (181)
479 2p67_A LAO/AO transport system 95.2 0.012 4.1E-07 37.0 2.5 20 12-31 56-75 (341)
480 2chq_A Replication factor C sm 95.2 0.012 4.1E-07 35.5 2.4 17 15-31 41-57 (319)
481 3pxi_A Negative regulator of g 95.2 0.011 3.8E-07 40.5 2.5 19 13-31 202-220 (758)
482 1w1w_A Structural maintenance 95.2 0.011 3.7E-07 38.1 2.3 17 15-31 29-45 (430)
483 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.015 5.3E-07 38.7 3.1 19 13-31 42-60 (500)
484 2zts_A Putative uncharacterize 95.2 0.011 3.9E-07 34.4 2.2 18 14-31 32-49 (251)
485 2ce7_A Cell division protein F 95.1 0.012 4.3E-07 38.9 2.6 18 14-31 51-68 (476)
486 2o5v_A DNA replication and rep 95.1 0.011 3.9E-07 37.7 2.4 18 14-31 28-45 (359)
487 2rdo_7 EF-G, elongation factor 95.1 0.018 6E-07 39.7 3.4 23 9-31 7-29 (704)
488 4b4t_M 26S protease regulatory 95.1 0.013 4.4E-07 38.5 2.6 20 12-31 215-234 (434)
489 3avx_A Elongation factor TS, e 95.1 0.017 5.9E-07 42.5 3.3 22 10-31 294-315 (1289)
490 4aby_A DNA repair protein RECN 95.1 0.0035 1.2E-07 39.8 -0.2 18 14-31 62-79 (415)
491 4f4c_A Multidrug resistance pr 95.0 0.0089 3E-07 43.6 1.8 18 14-31 1107-1124(1321)
492 4b4t_L 26S protease subunit RP 95.0 0.014 4.8E-07 38.4 2.6 19 13-31 216-234 (437)
493 1r6b_X CLPA protein; AAA+, N-t 95.0 0.015 5E-07 39.8 2.7 19 13-31 208-226 (758)
494 1zu4_A FTSY; GTPase, signal re 95.0 0.014 4.9E-07 36.6 2.5 19 13-31 106-124 (320)
495 3k1j_A LON protease, ATP-depen 95.0 0.013 4.6E-07 39.3 2.5 18 14-31 62-79 (604)
496 2c9o_A RUVB-like 1; hexameric 94.9 0.015 5.1E-07 37.8 2.5 19 13-31 64-82 (456)
497 3j16_B RLI1P; ribosome recycli 94.9 0.015 5E-07 39.6 2.4 17 15-31 381-397 (608)
498 4f4c_A Multidrug resistance pr 94.9 0.022 7.5E-07 41.6 3.4 18 14-31 446-463 (1321)
499 3ake_A Cytidylate kinase; CMP 94.9 0.021 7.1E-07 32.6 2.8 18 14-31 4-21 (208)
500 1sky_E F1-ATPase, F1-ATP synth 94.8 0.017 5.9E-07 38.4 2.6 18 14-31 153-170 (473)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.39 E-value=2.9e-13 Score=81.35 Aligned_cols=45 Identities=29% Similarity=0.268 Sum_probs=28.7
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
+...|||+++|++|||||||+.| |..+.|...|.||++ +|++.+.
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r------~~~~~f~~~~~~Tig-~d~~~k~ 54 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITR------FMYDSFDNTYQATIG-IDFLSKT 54 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHH------HHHSCCC-----------CEEEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHH------HHhCCCCCCcCCccc-eEEEEEE
Confidence 34569999999999999999998 999999999999998 6766544
No 2
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.08 E-value=1.8e-10 Score=65.76 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=35.5
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
...+..+||+++|+.++|||||+.+ +..+.+...+.||++ .++.
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~-~~~~ 49 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQ------YTDGKFNSKFITTVG-IDFR 49 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHH------HHHSCCCCSCCCCCS-EEEE
T ss_pred cccceeEEEEEECCCCCCHHHHHHH------HhcCCCCcCcccccc-eeee
Confidence 3456789999999999999999997 777777777788887 4444
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.00 E-value=4.5e-10 Score=66.32 Aligned_cols=45 Identities=36% Similarity=0.508 Sum_probs=35.2
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
......+||+++|+.+||||||+.+ +..+.|...+.||++ +.+..
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~------l~~~~~~~~~~~t~~--~~~~~ 66 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQV------LAKDCYPETYVPTVF--ENYTA 66 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHH------HHHSCCCSSCCCCSE--EEEEE
T ss_pred CCccceEEEEEECcCCCCHHHHHHH------HhcCCCCCCcCCeee--eeEEE
Confidence 3445679999999999999999998 888888888999998 66653
No 4
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.99 E-value=9.6e-10 Score=64.38 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=35.2
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
..+..+||+++|+.+||||||+.+ +..+.+...+.||++ +++.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~------l~~~~~~~~~~~t~~-~~~~ 63 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYR------YTDNKFNPKFITTVG-IDFR 63 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHH------HHCSCCCCEEEEEEE-EEEE
T ss_pred CcceeEEEEEECcCCCCHHHHHHH------HhcCCCCcCCCCcee-EEEE
Confidence 346789999999999999999997 777777777888887 4444
No 5
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.99 E-value=5.2e-10 Score=64.00 Aligned_cols=30 Identities=27% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCCCCCCCCceeeEEEEECCCCChHHHHHh
Q psy15257 1 MLSDNEQPHQELVKCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 1 m~~~~~~~~~~~~kvv~lG~~gvGKTsl~~ 30 (65)
|+..+.......+||+++|+++||||||+.
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHH
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHH
Confidence 344444556778999999999999999993
No 6
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.99 E-value=7.4e-10 Score=63.78 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=33.0
Q ss_pred CCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 5 NEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 5 ~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
........+||+++|+.+||||||+.+ +..+.+...+.++++
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~------l~~~~~~~~~~~t~~ 59 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSR------FTRNEFSHDSRTTIG 59 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHH------HHHSCCCSSCCCCSS
T ss_pred cccccCcceEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 344567789999999999999999997 776667766777766
No 7
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.98 E-value=5.9e-10 Score=64.39 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=34.0
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
....+||+++|+.+||||||+.+ +..+.|...+.||++ +.+.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~------l~~~~~~~~~~~t~~--~~~~ 59 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVK------FLTKRFISEYDPNLE--DTYS 59 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHH------HHHSSCCSCCCTTCC--EEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHH------HHhCCCCcccCCCcc--ceee
Confidence 35679999999999999999997 777778888888887 5544
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=6.4e-10 Score=65.37 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=35.2
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
..++..+||+++|+++||||||+.+ +..+.+...+.||++ .+++.
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~------l~~~~~~~~~~~t~~-~~~~~ 65 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRR------FTQGLFPPGQGATIG-VDFMI 65 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHH------HHHSSCCTTCCCCCS-EEEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHH------HHhCCCCCCCCCccc-eeEEE
Confidence 3456789999999999999999997 777777777778876 44443
No 9
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.98 E-value=4.3e-10 Score=63.86 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=32.3
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
..+|++++|+++||||||+.+ +..+.|.. +.||++ +.+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~------l~~~~~~~-~~~t~~--~~~~~~ 46 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHR------FLTGSYQV-LEKTES--EQYKKE 46 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHH------HHHSCCCC-CSSCSS--SEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHH------HHhCCCCC-cCCCcc--eeEEEE
Confidence 468999999999999999997 77666665 677776 555443
No 10
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.97 E-value=9.2e-10 Score=63.94 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=34.6
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
..+..+|++++|++|+|||||+.+ +....+...+.||++ +++...
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~------l~~~~~~~~~~~t~~-~~~~~~ 69 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSR------FTRNEFNLESKSTIG-VEFATR 69 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHH------HHHSCCCCSCCCCCS-EEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCccc-eEEEEE
Confidence 345679999999999999999997 777777777777776 344333
No 11
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=5.8e-10 Score=64.28 Aligned_cols=44 Identities=45% Similarity=0.705 Sum_probs=35.4
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.+....+|++++|+.+||||||+.+ +..+.|...+.||++ +.+.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~------l~~~~~~~~~~~t~~--~~~~ 56 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMS------YANDAFPEEYVPTVF--DHYA 56 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHH------HHHSSCCCSCCCSSC--CCEE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc--ceeE
Confidence 3445779999999999999999997 777777777888876 5554
No 12
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.96 E-value=6.3e-10 Score=65.54 Aligned_cols=41 Identities=34% Similarity=0.525 Sum_probs=28.3
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
...+||+++|++|||||||+.+ +..+.+...+.||++ +.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~------l~~~~~~~~~~~t~~--~~~~ 72 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMV------FADGAFPESYTPTVF--ERYM 72 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHH------HHC-------CCCCC--EEEE
T ss_pred cceEEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCccc--eeEE
Confidence 4579999999999999999997 777777777888876 5544
No 13
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.95 E-value=8.7e-10 Score=62.19 Aligned_cols=43 Identities=30% Similarity=0.312 Sum_probs=33.0
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
....+|++++|+.++|||||+.+ +..+.+...+.|+++ .+++.
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~~~~-~~~~~ 53 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITR------FMYDSFDNTYQATIG-IDFLS 53 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHH------HHHSCCCSSCCCCCS-EEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCcee-eEEEE
Confidence 34569999999999999999997 666677777777776 44433
No 14
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.95 E-value=5.1e-10 Score=63.81 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=18.6
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+..+||+++|+.+||||||+.+ +..+.+...+.||++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~------l~~~~~~~~~~~t~~ 42 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFR------FSEDAFNSTFISTIG 42 (183)
T ss_dssp CSEEEEEEEECCCCC----------------------CHHHHHC
T ss_pred cCCceEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCccc
Confidence 45789999999999999999997 777777777777776
No 15
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.95 E-value=7.7e-10 Score=65.11 Aligned_cols=44 Identities=34% Similarity=0.493 Sum_probs=34.8
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
.....+||+++|+.+||||||+.+ +..+.|...+.||++ +.+..
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~------l~~~~~~~~~~~t~~--~~~~~ 67 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHV------FAKDCFPENYVPTVF--ENYTA 67 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHH------HHHSCCCSSCCCCSE--EEEEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHH------HhcCCCCCCcCCccc--eeEEE
Confidence 345679999999999999999997 777788888889988 55543
No 16
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.93 E-value=1.1e-09 Score=62.91 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=34.6
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
....+|++++|+++||||||+.+ +..+.|...+.||++ +.+..
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~------l~~~~~~~~~~~t~~--~~~~~ 46 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHV------FAKDCFPENYVPTVF--ENYTA 46 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHH------HHHSCCCSSCCCCSE--EEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc--eeEEE
Confidence 34579999999999999999997 777778888889988 55543
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.93 E-value=1.9e-09 Score=62.15 Aligned_cols=43 Identities=44% Similarity=0.607 Sum_probs=35.8
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
....+|++++|+++||||||+.+ +..+.+...+.||++ +.+..
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~------l~~~~~~~~~~~t~~--~~~~~ 62 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLA------FSKGEIPTAYVPTVF--ENFSH 62 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHH------HHHSCCCSSCCCCSE--EEEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHH------HhcCCCCCccCCeee--eeeEE
Confidence 45679999999999999999997 777778888889988 55554
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=63.77 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=26.6
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEee
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQ 56 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~ 56 (65)
+......+||+++|+.+||||+|+.+ +..+.|...+.||++ .++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~------l~~~~~~~~~~~t~~-~~~ 66 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQR------FKTGAFSERQGSTIG-VDF 66 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHH------HHHSCC-----------CE
T ss_pred ccccccceEEEEECcCCCCHHHHHHH------HhhCCCCCCCCCCcc-eEE
Confidence 34456789999999999999999997 777777777888876 344
No 19
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.92 E-value=2.4e-09 Score=61.01 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=34.7
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
..+..+||+++|+.++|||||+.+ +..+.+...+.|+++ .+++.
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~-~~~~~ 49 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQ------FIEKKFKDDSNHTIG-VEFGS 49 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHH------HHHSSCCTTCCCCSE-EEEEE
T ss_pred ccccceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCccc-eEEEE
Confidence 346789999999999999999997 777777777777776 34433
No 20
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.91 E-value=9.3e-10 Score=64.80 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 4 DNEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 4 ~~~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+........+||+++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~------~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLG 49 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTT------BHHHHHTCEEETTTT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCccc
Confidence 3444556789999999999999999997 777777777777765
No 21
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.91 E-value=1.6e-09 Score=61.13 Aligned_cols=39 Identities=36% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+....+|++++|+.|+|||||+.+ +..+.+...+.||++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~t~~ 43 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQ------FIQSYFVSDYDPTIE 43 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHH------HHHSSCCSSCCTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHH------HHhCcCccccCCCcC
Confidence 345679999999999999999997 766677777778776
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.91 E-value=2.2e-09 Score=62.00 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.....+|++++|++|||||||+.+ +..+.|...+.||.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~------~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHR------YLTGTYVQEESPEGG 54 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHH------HHHSSCCCCCCTTCE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHH------HhcCCCCCCcCCCcc
Confidence 345679999999999999999997 777777777777744
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.90 E-value=2e-09 Score=61.29 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.....+||+++|+.++|||+|+.+ +..+.+...+.|+++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~------l~~~~~~~~~~~t~~ 52 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQ------FFQKIFVDDYDPTIE 52 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHH------HHHSCCCSCCCTTCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCCcc
Confidence 345679999999999999999997 777777777777776
No 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.90 E-value=7.7e-10 Score=62.60 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=30.0
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|+++||||||+.+ +..+.+...+.||++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~------l~~~~~~~~~~~t~~ 40 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTC------FAQETFGKQYKQTIG 40 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHH------HHGGGTTHHHHHTTT
T ss_pred CceEEEEEECcCCCCHHHHHHH------HHhCcCCCCCCCcee
Confidence 4569999999999999999997 666666666667665
No 25
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.89 E-value=2e-09 Score=62.55 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=28.0
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+..+|++++|++|+|||||+.+ +....+...+.||++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~------l~~~~~~~~~~~t~~ 39 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSR------FTRNEFNLESKSTIG 39 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHH------HHHSCCCC---CCCS
T ss_pred cceEEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 5679999999999999999997 666666666666654
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.89 E-value=1.9e-09 Score=62.32 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+.+....+||+++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~------l~~~~~~~~~~~t~~ 60 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMER------FTDDTFCEACKSTVG 60 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHH------HCC--------CCTT
T ss_pred CcccCCceEEEEECCCCCCHHHHHHH------HhcCCCCcCCCCccc
Confidence 44556789999999999999999997 776777666667665
No 27
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.89 E-value=1.8e-09 Score=61.14 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+......+|++++|+.++|||+|+.+ +..+.+...+.++++
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 46 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLR------FVKDQFVEFQESTIG 46 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHH------HHHCCCTTTSCCCSC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHH------HHcCCCCCcCCCCce
Confidence 34456779999999999999999997 666666666666665
No 28
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.89 E-value=2.9e-09 Score=60.11 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+..+||+++|++++|||||+.+ +..+.+...+.|+++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~------l~~~~~~~~~~~~~~ 43 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLR------FADNTFSGSYITTIG 43 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHH------HCSCC---CCTTTBS
T ss_pred ccCcceEEEEECCCCCCHHHHHHH------HhcCCCCCccCCCce
Confidence 456779999999999999999997 776666666666665
No 29
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.89 E-value=2.8e-09 Score=60.19 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=28.8
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+|++++|++|+|||||+.+ +..+.+...+.|+++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 41 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNR------YVTNKFDTQLFHTIG 41 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHH------HHHSCCCC----CCS
T ss_pred ccceeEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCcee
Confidence 45679999999999999999997 776677777777776
No 30
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.89 E-value=2.4e-09 Score=60.33 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
......+|++++|+.++|||||+.+ +..+.+...+.+|++
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 49 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQ------FTEKKFMADCPHTIG 49 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHH------HHHSCCCSSCTTSCC
T ss_pred cccccceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCccc
Confidence 3456789999999999999999997 666666666666665
No 31
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.89 E-value=1.7e-09 Score=63.17 Aligned_cols=42 Identities=38% Similarity=0.710 Sum_probs=34.5
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
...+|++++|+.+||||+|+.+ +..+.|...+.||++ +.+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~------l~~~~~~~~~~~t~~--~~~~~ 48 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLIC------YTSNKFPTDYIPTVF--DNFSA 48 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHH------HHHSCCCSSCCCSSC--CCEEE
T ss_pred CceEEEEEECCCCCCHHHHHHH------HhcCCCCccCCCccc--eeEEE
Confidence 3569999999999999999997 777777778888887 55543
No 32
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=1.9e-09 Score=62.36 Aligned_cols=41 Identities=27% Similarity=0.398 Sum_probs=32.9
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
...+||+++|+.+||||||+.+ +..+.+...+.||++ +.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~------l~~~~~~~~~~~t~~--~~~~ 66 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVR------FLTKRFIWEYDPTLE--STYR 66 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHH------HHHSCCCSCCCTTCC--EEEE
T ss_pred CCceEEEEECCCCCCHHHHHHH------HHhCCCCcccCCCCC--ceEE
Confidence 4568999999999999999997 777777777788877 4443
No 33
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.88 E-value=1.7e-09 Score=62.18 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccc-cccceEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLT-THVPTVW 52 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~-~~~~ti~ 52 (65)
.+....+||+++|+.+||||||+.+ +..+.+.. .+.||++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~------l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQ------VKPAQSSSKHITATVG 52 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHH------HSCCC----CCCCCSS
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHH------HhcCCCcccccccccc
Confidence 4456779999999999999999997 77777777 7788876
No 34
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.9e-09 Score=63.69 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+..+||+++|+.+||||+|+.+ +..+.+...+.||++
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~------l~~~~~~~~~~~t~~ 47 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSR------FTKNEFNMDSKSTIG 47 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHH------HHHCCCCC------C
T ss_pred CCCeeeEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 346789999999999999999997 776677766777776
No 35
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.88 E-value=1.3e-09 Score=61.60 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=30.2
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
....+|++++|++|+|||||+.+ +..+.+...+.|+++ .+++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~-~~~~~ 47 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHR------YVNDKYSQQYKATIG-ADFLT 47 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHH------HHHSCCCTTC---CC-CSCEE
T ss_pred cCceEEEEEECCCCCCHHHHHHH------HHhCcCCcccCCccc-eEEEE
Confidence 45679999999999999999997 666667777777775 34443
No 36
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.88 E-value=3e-09 Score=59.38 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=33.4
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRI 59 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~ 59 (65)
.+|++++|++++|||||+.+ +..+.+...+.||++ +.+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~------l~~~~~~~~~~~t~~--~~~~~ 42 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQ------FVQGIFVEKYDPTIE--DSYRK 42 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHH------HHHCCCCCSCCCCSE--EEEEE
T ss_pred eeEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCCcc--ceEEE
Confidence 58999999999999999997 777777788888888 55543
No 37
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.88 E-value=2.1e-09 Score=62.65 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+..+||+++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~------l~~~~~~~~~~~t~~ 59 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQ------FIENKFKQDSNHTIG 59 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHH------HHC------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHH------HHhCCCCccCCCccc
Confidence 446789999999999999999997 777777777777776
No 38
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=62.63 Aligned_cols=43 Identities=40% Similarity=0.642 Sum_probs=26.5
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
.....+||+++|+.+||||||+.+ +..+.|...+.||++ +.+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~------l~~~~~~~~~~~t~~--~~~~ 58 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVS------YTTNGYPTEYIPTAF--DNFS 58 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHH------HHC--------CCSS--EEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCccc--ceeE
Confidence 345679999999999999999997 776777777888876 5544
No 39
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.87 E-value=3.8e-09 Score=60.87 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=29.0
Q ss_pred CCCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 6 EQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 6 ~~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+......+|++++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 55 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQ------FTDKRFQPVHDLTIG 55 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHH------HHHSCCCC-----CC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 34556789999999999999999997 666666666666655
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.87 E-value=4.6e-09 Score=60.81 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+..+||+++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 42 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFR------YADDSFTPAFVSTVG 42 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHH------HHTCCCCSCCCCCCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHH------HhcCCCCCCcCCccc
Confidence 345789999999999999999997 777777777777776
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.86 E-value=2e-09 Score=60.12 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=30.1
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|+|||||+.+ +..+.+...+.||++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~------l~~~~~~~~~~~t~~ 39 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQR------YCKGIFTKDYKKTIG 39 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHH------HHHCCCCCCSSCCCS
T ss_pred ceeEEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCceE
Confidence 4578999999999999999997 666667667777765
No 42
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.86 E-value=1.4e-09 Score=62.58 Aligned_cols=40 Identities=33% Similarity=0.338 Sum_probs=24.0
Q ss_pred eeEEEEECCCCChHHHHHhHhhhcccccc--ccccccccceEEEEeeEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSL--SQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~--~~~~~~~~~ti~~vd~~~ 58 (65)
.+|++++|++|||||||+.+ +.. ..+...+.||++ +++..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~------l~~~~~~~~~~~~~t~g-~~~~~ 43 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQ------LMKTKKSDLGMQSATVG-IDVKD 43 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHH------HTCC-----------CS-EEEEE
T ss_pred ceEEEEECCCCCCHHHHHHH------HhcCCCccCCCcceecc-EEeEE
Confidence 47999999999999999997 655 356667788887 55543
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.86 E-value=2.6e-09 Score=59.87 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=30.9
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+|++++|++++|||||+.+ +..+.+...+.|+++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~t~~ 40 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLR------YCENKFNDKHITTLG 40 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHH------HHHCCCCSSCCCCCS
T ss_pred CCcceEEEEECcCCCCHHHHHHH------HHcCCCCcCCCCccc
Confidence 35679999999999999999997 666667666777766
No 44
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.86 E-value=2.8e-09 Score=61.72 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=33.1
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
....+|++++|+.++|||||+.+ +....+...+.|+++ .+++.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~-~~~~~ 47 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQ------YVNKKFSNQYKATIG-ADFLT 47 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHH------HHHSCCCSSCCCCCS-EEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCccc-ceEEE
Confidence 45679999999999999999997 777777777778776 34444
No 45
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.86 E-value=2.4e-09 Score=62.25 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=31.6
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+..+||+++|+.++|||||+.+ +..+.+...+.|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 42 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLR------FSDDTYTNDYISTIG 42 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHH------HHHCCCCTTCCCSSC
T ss_pred cCcceEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 46789999999999999999997 766667777777765
No 46
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.85 E-value=2.6e-09 Score=62.46 Aligned_cols=44 Identities=41% Similarity=0.650 Sum_probs=34.2
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
...+||+++|+.+||||||+.+ +..+.+...+.||++ +.+...+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~------l~~~~~~~~~~~t~~--~~~~~~~ 71 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLIS------YTTNAFPGEYIPTVF--DNYSANV 71 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHH------HHHSCCCC-CCCCSE--EEEEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHH------HHhCCCCCCcCCeec--ceeEEEE
Confidence 4568999999999999999997 777788888888887 6655443
No 47
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.84 E-value=4.4e-09 Score=59.67 Aligned_cols=40 Identities=45% Similarity=0.756 Sum_probs=32.5
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
..+|++++|++++|||||+.+ +..+.+...+.||++ +.+.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~------l~~~~~~~~~~~t~~--~~~~ 43 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLIS------YTTNAFPGEYIPTVF--DNYS 43 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHH------HHHSSCCSSCCCCSC--CEEE
T ss_pred cEEEEEEECCCCCCHHHHHHH------HHcCCCCCCcCCccc--ceeE
Confidence 568999999999999999997 776777777777776 5444
No 48
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.84 E-value=6.6e-09 Score=59.66 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=32.4
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+..+||+++|+.++|||+|+.+ +..+.+...+.|+++
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 56 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFR------YADDSFTPAFVSTVG 56 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHH------HHHSCCCCSCCCCCC
T ss_pred cccCceeEEEEECCCCCCHHHHHHH------HHcCCCCCCcCCcee
Confidence 3456779999999999999999997 766667666777766
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.84 E-value=4.1e-09 Score=58.61 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=29.8
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+|++++|+.++|||||+.+ +..+.+...+.|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 37 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQ------FVTGTFIEKYDPTIE 37 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHH------HHHSCCCSCCCTTCC
T ss_pred EEEEEEECCCCCCHHHHHHH------HHcCCCcccCCCCcc
Confidence 58999999999999999997 776777777777776
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.84 E-value=6.2e-09 Score=58.21 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.4
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+|++++|+.++|||||+.+ +..+.+...+.|+++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 40 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWR------FVEDSFDPNINPTIG 40 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHH------HHHSCCCTTCCCCCS
T ss_pred CCcceEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCcee
Confidence 35679999999999999999997 776677666777766
No 51
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.84 E-value=2.5e-09 Score=62.31 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=19.9
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
+....+||+++|+++||||||+.+
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~ 42 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGT 42 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHH
T ss_pred CCCcEEEEEEECCCCCCHHHHHHH
Confidence 446679999999999999999997
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.83 E-value=4.8e-09 Score=60.57 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=33.3
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
....+||+++|+.|+|||+|+.+ +..+.+...+.||++ +.+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~--~~~~ 52 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQ------FMYDEFVEDYEPTKA--DSYR 52 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHH------HHHSCCCTTCCTTCC--EEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCccc--eEEE
Confidence 34568999999999999999997 766667777777776 4443
No 53
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.83 E-value=4.2e-09 Score=59.85 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=33.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
...+|++++|+.+||||+|+.+ +..+.+...+.||++ +.+.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~------l~~~~~~~~~~~t~~--~~~~ 44 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQ------FVEGQFVDSYDPTIE--NTFT 44 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHH------HHHSSCCSCCCTTCC--EEEE
T ss_pred CceEEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCCcc--ccEE
Confidence 4578999999999999999997 777777778888877 4443
No 54
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=3.6e-09 Score=61.12 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+...+||+++|+.++|||||+.+ +..+.+...+.|+++
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCR------FVQDHFDHNISPTIG 57 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHH------HHHCCCCTTCCCCSS
T ss_pred cccCCceEEEEECcCCCCHHHHHHH------HhcCCCCCCcCCCcc
Confidence 3456789999999999999999997 776677767777776
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=5.8e-09 Score=59.67 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=31.5
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+||+++|+.+||||+|+.+ +..+.+...+.|+++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~t~~ 49 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLR------FTDDTFDPELAATIG 49 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHH------HHHSCCCTTCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHH------HHcCCCCccCCCccc
Confidence 34579999999999999999997 777777777777765
No 56
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.82 E-value=6.9e-09 Score=59.49 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.....+||+++|+.++|||+|+.+ +..+.+...+.|+++
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 50 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLR------FADDTYTESYISTIG 50 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHH------HHHSCCCSCCCCCSS
T ss_pred ccccceEEEEECcCCCCHHHHHHH------HHcCCCCCCCCCccc
Confidence 345779999999999999999997 766677766666665
No 57
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.82 E-value=5.6e-09 Score=58.28 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=30.3
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|+.++|||||+.+ +..+.+...+.|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~~~~ 40 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLR------FVKGQFHEFQESTIG 40 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHH------HHHSCCCTTCCCCSS
T ss_pred CceEEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCccc
Confidence 4679999999999999999997 666666666666665
No 58
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.82 E-value=4.8e-09 Score=60.40 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=31.8
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.+||||||+.+ +..+.+...+.||++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 56 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNV------IASGQFNEDMIPTVG 56 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHH------HHHSCCCCSCCCCCS
T ss_pred CCccEEEEECCCCCCHHHHHHH------HHcCCCCCccCCCCc
Confidence 4579999999999999999997 777777777888887
No 59
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=3.6e-09 Score=63.08 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....+||+++|+++||||||+.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r 56 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANI 56 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHH
Confidence 345679999999999999999997
No 60
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.81 E-value=4.2e-09 Score=60.50 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=30.1
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.++|||||+.+ +..+.+...+.|+++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 54 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYR------FCAGRFPDRTEATIG 54 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHH------HHHSSCCSSCCCCCS
T ss_pred CceEEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCCcc
Confidence 4569999999999999999997 776677766777765
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.81 E-value=3.8e-09 Score=60.31 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=35.4
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~~ 61 (65)
...+||+++|+.++|||||+.+ +....+...+.||++ .+++...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~-~~~~~~~~ 49 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLR------LTKDTFHENTNTTIG-ASFCTYVV 49 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHH------HHHSCCCSSCCCCCS-CEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHH------HHhCcCCCCcCcccc-ceeEEEEE
Confidence 3568999999999999999997 777777788888887 34444433
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=1.8e-09 Score=62.25 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=32.7
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+..+||+++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 57 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFR------YADDTFTPAFVSTVG 57 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHH------HHHHTTCCCEEEEET
T ss_pred ccCeeeEEEEECCCCcCHHHHHHH------HhcCCCCcccCCCee
Confidence 446779999999999999999997 777777777777776
No 63
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.81 E-value=6.3e-09 Score=58.06 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=29.7
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+.|+|||||+.+ +..+.+...+.|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~~~~ 37 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLR------FVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHH------HHHSCCCTTCCCCSS
T ss_pred ceEEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 358999999999999999997 666667666777766
No 64
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.81 E-value=4.8e-09 Score=60.88 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.....+||+++|+.+||||||+.+ +..+.|...+.|+++
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 62 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMR------LCKNEFRENISATLG 62 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHH------HHHCCCC--------
T ss_pred CcCCCeEEEEECcCCCCHHHHHHH------HHhCCCCccCCCCcc
Confidence 345579999999999999999997 766667666777776
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.79 E-value=6.8e-09 Score=58.83 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.3
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.++|||+|+.+ +..+.+...+.||++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~ 52 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQ------FMYDEFVEDYEPTKA 52 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHH------HHHSCCCCSCCTTCC
T ss_pred CCceEEEEECCCCCCHHHHHHH------HhhCCCCCcCCCccc
Confidence 4569999999999999999997 666667777777776
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.79 E-value=8e-09 Score=57.73 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=29.8
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+.|+|||||+.+ +..+.+...+.|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~t~~ 37 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLR------FVKGTFRESYIPTVE 37 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHH------HHTCCCCSSCCCCSC
T ss_pred CceEEEEECCCCCCHHHHHHH------HHcCCCCCCCCCCcc
Confidence 358999999999999999997 666667666777776
No 67
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.79 E-value=5.2e-09 Score=60.78 Aligned_cols=38 Identities=29% Similarity=0.256 Sum_probs=32.1
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+|++++|+.+||||||+.+ +..+.+...+.||++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 58 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQ------FVEGEFSEGYDPTVE 58 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHH------HHHSCCCSCCCCCSE
T ss_pred CCCcEEEEEECCCCcCHHHHHHH------HHhCCCCCCCCCccc
Confidence 34579999999999999999997 777778888888887
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.78 E-value=9.4e-09 Score=57.14 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=29.8
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|+.|+|||||+.+ +..+.+...+.||++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~------l~~~~~~~~~~~t~~ 38 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQ------FMYDEFVEDYEPTKA 38 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHH------HHHSCCCSCCCTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHH------HHhCccCCCCCCCcc
Confidence 358999999999999999997 666667777777776
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.78 E-value=4.6e-09 Score=61.10 Aligned_cols=38 Identities=42% Similarity=0.473 Sum_probs=31.5
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+||+++|+.+||||||+.+ +..+.+...+.||++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 59 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTVF 59 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHH------HHHSSCCSSCCCSSC
T ss_pred cccceEEEEECCCCCCHHHHHHH------HHhCcCCcccCCccc
Confidence 35679999999999999999997 776667777777766
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.78 E-value=9.6e-09 Score=58.39 Aligned_cols=40 Identities=35% Similarity=0.470 Sum_probs=31.7
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
..+|++++|+.|+|||||+.+ +..+.+...+.+|.+ +.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~--~~~~ 42 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQ------LIQNHFVDEYDPTIE--DSYR 42 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHH------HHHSSCCCCCCTTCC--EEEE
T ss_pred cEEEEEEECCCCCCHHHHHHH------HHhCCCCCCCCCCch--heEE
Confidence 568999999999999999997 666667777777765 4444
No 71
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.78 E-value=5.6e-09 Score=58.40 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=25.0
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|++++|||||+.+ +..+.+...+.|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~~~~ 37 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVR------FVEDKFNPSFITTIG 37 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHH------HHHCCCCC-------
T ss_pred CceEEEEECcCCCCHHHHHHH------HHhCCCCCCCCCccc
Confidence 458999999999999999997 666667677777776
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.77 E-value=1.4e-09 Score=61.65 Aligned_cols=37 Identities=46% Similarity=0.719 Sum_probs=24.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++++|||||+.+ +..+.+...+.||++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~------~~~~~~~~~~~~t~~ 42 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLIS------YTSNTFPTDYVPTVF 42 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHH------HHHSCCC--------
T ss_pred CceEEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCeee
Confidence 3458999999999999999997 777777777888887
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.77 E-value=1.8e-09 Score=62.31 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=7.6
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccc--cccccccceEEEEeeE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLS--QLLTTHVPTVWAIDQY 57 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~--~~~~~~~~ti~~vd~~ 57 (65)
...+||+++|+++||||||+.+ +..+ .+...+.||++ ++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~~~t~~-~~~~ 60 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISM------FTSKGSKFLKDYAMTSG-VEVV 60 (208)
T ss_dssp EEEEEEEEC-----------------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHH------HHhCCCcccCCCCCccc-eEEE
Confidence 4678999999999999999997 7776 77778888887 4444
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.75 E-value=1.2e-08 Score=58.38 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=29.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.|||||||+.+ +..+.+...+.+|++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 55 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQ------LIQNHFVDEYDPTIE 55 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHH------HHHSSCCSCCCTTCC
T ss_pred cceeEEEEECcCCCCHHHHHHH------HHcCCCccccCCccc
Confidence 4568999999999999999997 666666666666665
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1e-08 Score=58.87 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=32.6
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
...+||+++|++++|||||+.+ +..+.+...+.||++ +.+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~--~~~~ 46 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLR------FVKGTFRDTYIPTIE--DTYR 46 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHH------HHHSCCCCTTSCCCC--EEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHH------HHcCCCCCcccCccc--ccee
Confidence 3458999999999999999997 776777777777776 4443
No 76
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.73 E-value=4.9e-09 Score=61.22 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.3
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|||||||+.+ +..+.|...+.++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~------l~~~~~~~~~~~~~~ 41 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVR------LLTGQYRDTQTSITD 41 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHH------HHHSCCCCBCCCCSC
T ss_pred CCCCEEEEECCCCCCHHHHHHH------HhCCCcccccCCcce
Confidence 4568999999999999999997 776667777766544
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.72 E-value=1.3e-08 Score=56.42 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=28.5
Q ss_pred eeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.+|++++|++|+|||||+.+ +..+.+...+.|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~------l~~~~~~~~~~~~~~ 37 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQ------LIQNHFVDECDPTIE 37 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHH------HHHSSCCSCCCTTCC
T ss_pred eeEEEEECCCCCCHHHHHHH------HHhCcCccccCCccc
Confidence 47999999999999999997 666666666666665
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.72 E-value=1.1e-08 Score=59.76 Aligned_cols=37 Identities=43% Similarity=0.479 Sum_probs=25.8
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.+||||||+.+ +..+.+...+.||++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 59 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIV------FSKDEFPEVYVPTVF 59 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHH------HHHSSCC-------C
T ss_pred ccCcEEEEECcCCCCHHHHHHH------HhcCCCCCcCCCccc
Confidence 4568999999999999999997 777777777778876
No 79
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=2.3e-08 Score=56.54 Aligned_cols=39 Identities=33% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhcccccccccc-ccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLL-TTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~-~~~~~ti~ 52 (65)
.....+|++++|++++|||+|+.+ +..+.+. ..+.||++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~------l~~~~~~~~~~~~t~~ 45 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVR------FKDGAFLAGTFISTVG 45 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHH------HHHSCCCCCCCCCCCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHH------HHhCCCCCCCcCCcee
Confidence 456789999999999999999997 6555553 35566665
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.70 E-value=1.2e-08 Score=59.22 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+||+++|+++||||||+.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~ 25 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANI 25 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHH
Confidence 468999999999999999996
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.70 E-value=1.4e-08 Score=59.00 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=28.7
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.....+||+++|+.+||||+|+.+ +....+...+.|+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 54 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVR------FVEDKFNPSFITTIG 54 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHH------HHHCCCCCSSSCCCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHH------HHhCCCCcccCCccc
Confidence 345579999999999999999997 666666666666665
No 82
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.67 E-value=3.9e-09 Score=67.31 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=31.2
Q ss_pred EEEEECCCCChHHHHHhHhhhccccccccccc---cccceEEEEeeEE----EEEEecC
Q psy15257 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLT---THVPTVWAIDQYR----IYKDTLE 65 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~---~~~~ti~~vd~~~----~~~~i~~ 65 (65)
|++++|++|||||||+.+ +..+.++. .+.||+| +++.. .+++|||
T Consensus 1 KIvllGdsgvGKTSLl~~------~~~~~~~~~~~~~~~Tig-~~~~~v~~~v~LqIWD 52 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKV------VFHNMQPLDTLYLESTSN-PSLEHFSTLIDLAVME 52 (331)
T ss_dssp CEEEECSTTSSTTHHHHH------HHSCCCSGGGTTCCCCCS-CCCEEECSSSCEEEEE
T ss_pred CEEEECCCCCCHHHHHHH------HHcCCCCCccceecCeee-eeeEEEccEEEEEEEE
Confidence 789999999999999985 44333322 3678888 55443 3466765
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.67 E-value=7.1e-09 Score=60.14 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+..+||+++|+.+||||||+.+ +..+.+...+.|+++
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~~~~ 67 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLR------FADDTYTESYISTIG 67 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTS------SBCCCCCCHHHHHHC
T ss_pred ccCcceEEEEECCCCCCHHHHHHH------HhcCCCCCCcCCccc
Confidence 345679999999999999999997 766666655555544
No 84
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.12 E-value=2.4e-09 Score=62.23 Aligned_cols=41 Identities=44% Similarity=0.729 Sum_probs=33.9
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYR 58 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~ 58 (65)
...+|++++|+.|||||||+.+ +..+.+...+.||++ +.+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~t~~--~~~~ 68 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLIS------YTTNAFPGEYIPTVF--DNYS 68 (204)
Confidence 4568999999999999999997 777777777888877 5544
No 85
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.65 E-value=2.1e-08 Score=60.87 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCceeeEEEEECCC---------CChHHHHHhHhhhcccccc---ccccccccceE
Q psy15257 8 PHQELVKCVVVGDT---------AVGKTRLICARACNKQVSL---SQLLTTHVPTV 51 (65)
Q Consensus 8 ~~~~~~kvv~lG~~---------gvGKTsl~~~~~~~~~~~~---~~~~~~~~~ti 51 (65)
.....+||+++|++ +||||||+.+ +.. +.|...+.||+
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~------l~~~~~~~~~~~~~~t~ 64 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNR------FVRPSADEFHLDHTSVL 64 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHH------HHCCSTTTCCSCCCCEE
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHH------HHhccCCccccccCCcc
Confidence 44567999999999 9999999997 665 55666666665
No 86
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.63 E-value=5e-08 Score=54.61 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=18.7
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|+++||||||+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~ 21 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGT 21 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHH
Confidence 47999999999999999996
No 87
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.62 E-value=3.7e-08 Score=55.33 Aligned_cols=21 Identities=43% Similarity=0.668 Sum_probs=19.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|+++||||||+.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~ 23 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASL 23 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHH
Confidence 468999999999999999996
No 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.60 E-value=1.1e-08 Score=58.69 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=27.3
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|||||||+.+ +..+.+ ..+.||++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~------l~~~~~-~~~~~t~g 49 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQ------LASEDI-SHITPTQG 49 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHH------HCCSCC-EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHH------HhcCCC-CcccCcCC
Confidence 4568999999999999999996 555433 34566665
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.60 E-value=4.3e-08 Score=55.90 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.5
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|+.+||||||+.+ +..+. ...+.||++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~------l~~~~-~~~~~~t~~ 51 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKK------FNGED-VDTISPTLG 51 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH------HTTCC-CSSCCCCSS
T ss_pred CCeeEEEEECCCCCCHHHHHHH------HhcCC-CCcccccCc
Confidence 4568999999999999999997 66555 556677765
No 90
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.60 E-value=6.9e-09 Score=60.74 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=28.3
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccc---cccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLT---THVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~---~~~~ti~ 52 (65)
....+|++++|++|+|||+|+.+ +....+.. .+.|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~------l~~~~~~~~~~~~~~~~~ 49 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTL------LTTDSVRPTVVSQEPLSA 49 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHH------HHHSSCCCBCCCSSCEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHH------HhcCCCCCeeeecCceEE
Confidence 45568999999999999999996 55444433 4667765
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.60 E-value=1.2e-08 Score=56.98 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=25.4
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
+|++++|+++||||||+.+ +..+.|.. +.||++
T Consensus 1 ~ki~~~G~~~~GKssl~~~------l~~~~~~~-~~~t~~ 33 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYK------LKLGEIVT-TIPTIG 33 (164)
T ss_dssp CEEEEECSTTSSHHHHHHH------HHHHCSSC-CCCCSS
T ss_pred CEEEEECCCCCCHHHHHHH------HHcCCcCc-ccCcCc
Confidence 5899999999999999997 55555543 456654
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.58 E-value=1.4e-08 Score=57.99 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
.....+|++++|+.+||||||+.+ +..+.+ ..+.||++
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~------l~~~~~-~~~~~t~~ 54 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQ------FSMNEV-VHTSPTIG 54 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHH------HHTTSC-EEEECCSS
T ss_pred CCCceeEEEEECCCCCCHHHHHHH------HhcCCC-CccCCcCc
Confidence 345679999999999999999996 555544 34455554
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.57 E-value=5.6e-08 Score=55.77 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhcccccccc-ccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQ-LLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~-~~~~~~~ti~ 52 (65)
....+||+++|+.+||||||+.+ +..+. +...+.||++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~~t~~ 56 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINK------LKPSNAQSQNILPTIG 56 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHH------TSCGGGCCSSCCCCSS
T ss_pred CCCccEEEEECCCCCCHHHHHHH------HhcCCCCCCCcCCccc
Confidence 34579999999999999999997 66665 5666777775
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=1.9e-08 Score=57.60 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=27.6
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.+||||||+.+ +..+.+. .+.||++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~------l~~~~~~-~~~~t~~ 49 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQ------FSMNEVV-HTSPTIG 49 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHH------HHTTSCE-EEECCSC
T ss_pred CCccEEEEECCCCCCHHHHHHH------HhcCCCC-cCcCCCc
Confidence 3468999999999999999997 5555554 4556654
No 95
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.56 E-value=4.9e-08 Score=57.05 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=29.6
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
....+||+++|+.+||||||+.+ +..+.+...+.+|++
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~------l~~~~~~~~~~~t~~ 45 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINR------VLDGRFEKNYNATVG 45 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCB------CTTCSTTCEEETTTT
T ss_pred ccCccEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc
Confidence 34579999999999999999997 776666666666665
No 96
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.55 E-value=8.7e-08 Score=54.60 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|++|||||||+.+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~ 26 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNA 26 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 468999999999999999996
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.55 E-value=7.7e-08 Score=59.12 Aligned_cols=42 Identities=48% Similarity=0.759 Sum_probs=34.4
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeEEEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~~~~ 60 (65)
..+|++++|+.++|||||+.+ +..+.+...+.||++ +.+...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~------~~~~~~~~~~~~t~~--~~~~~~ 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLIS------YTTNAFPGEYIPTVF--DNYSAN 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHH------HHHSCCCCSCCCCSE--EEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHH------HHhCCCCcccCCccc--ceeEEE
Confidence 358999999999999999997 777778778888887 555543
No 98
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.53 E-value=8e-08 Score=54.27 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|++|||||||+.+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~ 22 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNA 22 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 47999999999999999996
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.51 E-value=3.1e-08 Score=57.34 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=27.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+||+++|+.+||||||+.+ +..+.+.. +.||++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~------l~~~~~~~-~~~t~~ 62 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYK------LKLGEIVT-TIPTIG 62 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHH------HCSSCCEE-EEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHH------HHhCCccc-cCCcCc
Confidence 4568999999999999999997 66555543 456654
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.49 E-value=1.7e-07 Score=58.42 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=27.1
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccc--ccc-ccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLS--QLL-TTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~--~~~-~~~~~ti~ 52 (65)
..+|++++|+++||||||+.+ +..+ .+. ..+.+|++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~------l~~~~~~~~~~~~~~Ti~ 40 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSI------IFSNYSAFDTRRLGATID 40 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHH------HHSCCCTGGGGGCCCCCS
T ss_pred CceEEEEECCCCCCHHHHHHH------HHhCCCCccccCcCCccc
Confidence 358999999999999999996 4443 333 35667776
No 101
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.48 E-value=1.3e-07 Score=52.67 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|++|||||||+.+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~ 21 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARI 21 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHH
Confidence 47999999999999999996
No 102
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2e-08 Score=57.63 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|++++|++|+|||||+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999996
No 103
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.47 E-value=1.1e-07 Score=62.92 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=25.9
Q ss_pred CceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEEEEeeE
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~~vd~~ 57 (65)
....+||+++|+++||||||+.+ +....|...+.||++ ++.+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~------l~~~~~~~~~~~t~g-~~~~ 79 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQ------LIGETFDPKESQTHG-LNVV 79 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHH------HHC-----------C-CCEE
T ss_pred cccceEEEEECCCCCCHHHHHHH------HhcCCCCCCCCCccc-eEEE
Confidence 45679999999999999999997 777778888889998 4444
No 104
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.46 E-value=2e-07 Score=52.10 Aligned_cols=36 Identities=19% Similarity=0.476 Sum_probs=27.2
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++++|||||+.+ +..+.+. .+.||++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~------l~~~~~~-~~~~t~~ 40 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYR------LQVGEVV-TTIPTIG 40 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH------HHHSSCC-CCCCCSS
T ss_pred CCccEEEEECCCCCCHHHHHHH------HhcCCCC-CcCCcCc
Confidence 3458999999999999999997 5555553 3556655
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.46 E-value=5.3e-08 Score=56.69 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=24.2
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|||||||+.+ +..+.+. .+.||++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~------l~~~~~~-~~~~t~~ 58 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHM------LKDDRLG-QHVPTLH 58 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHH------HSCC-------CCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHH------HhcCCCC-ccCCCCC
Confidence 3457999999999999999997 6555543 3556654
No 106
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.45 E-value=7e-08 Score=55.23 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=27.2
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|+++||||||+.+ +..+.+.. +.||++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~------l~~~~~~~-~~~t~~ 55 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYR------LHLGDVVT-TVPTVG 55 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHH------TCCSCCEE-ECSSTT
T ss_pred CCceEEEEECCCCCCHHHHHHH------HHcCCCCC-cCCCCc
Confidence 3568999999999999999997 65555543 455543
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.45 E-value=1.2e-07 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.9
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+||+++|++|||||||+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~ 27 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDA 27 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999996
No 108
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.42 E-value=4.4e-08 Score=55.54 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=27.7
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|+.|||||||+.+ +..+.+ ..+.||++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~------l~~~~~-~~~~~t~~ 51 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYR------LQIGEV-VTTKPTIG 51 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHH------TCCSEE-EEECSSTT
T ss_pred CCccEEEEECCCCCCHHHHHHH------HhcCCc-CccCCcCc
Confidence 4568999999999999999997 665555 44555554
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.38 E-value=1.1e-07 Score=54.02 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=24.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhccccccccccccccce
Q psy15257 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPT 50 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~t 50 (65)
+|++++|++|||||||+.+ +..+.+...+.|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~------l~~~~~~~~~~~~ 33 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYR------LTGKKVRRGKRPG 33 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHH------HHSCCCSSSSSTT
T ss_pred cEEEEECCCCCCHHHHHHH------HhCcCCccCCCCC
Confidence 6899999999999999996 5555555544443
No 110
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.36 E-value=3e-07 Score=53.08 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=25.5
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|||||||+.+ +..+.+. .+.||++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~------l~~~~~~-~~~~t~~ 56 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHM------LKNDRLA-TLQPTWH 56 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHH------HHHSCCC-CCCCCCS
T ss_pred CCccEEEEECCCCCCHHHHHHH------HhcCCCC-ccccCCC
Confidence 3457999999999999999996 5555443 3556655
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.35 E-value=1.3e-07 Score=54.16 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=22.3
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|++|+|||||+.+ +....|...+.++.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~------l~~~~~~~~~~~~~~ 57 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINS------LINRKNLARTSSKPG 57 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHH------HHTC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHH------HhCCCCccccCCCCC
Confidence 4568999999999999999997 555554444444443
No 112
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.35 E-value=3.9e-07 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhHh
Q psy15257 10 QELVKCVVVGDTAVGKTRLICAR 32 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~ 32 (65)
...++|+++|++|+|||||+.+.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHH
T ss_pred ccEEEEEEECCCCCCHHHHHHHH
Confidence 45699999999999999999863
No 113
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.33 E-value=2.6e-07 Score=54.32 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=29.3
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+|++++|++|||||||+.+ +....+...+.++++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~------l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEK------LIDNLKDKYKIACIA 72 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHH------HHHHHTTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHH------HHHHhccCCeEEEEE
Confidence 358999999999999999997 666666666677776
No 114
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.33 E-value=3.1e-07 Score=57.76 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=27.3
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
..+||+++|+.+||||+|+.+ +..+.|...+ ||++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~------l~~~~~~~~~-pT~~ 198 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYK------LKLGEIVTTI-PTIG 198 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHH------TCSSCCEEEE-EETT
T ss_pred CcceEEEECCCCccHHHHHHH------HhCCCCCCcc-cccc
Confidence 457999999999999999997 6666665443 5665
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.32 E-value=2.8e-07 Score=53.28 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=18.7
Q ss_pred CCCceeeEEEEECCCCChHHHHHhH
Q psy15257 7 QPHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 7 ~~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
......+|++++|+++||||||+.+
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~ 39 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKV 39 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHH
Confidence 3456679999999999999999973
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.28 E-value=1.1e-06 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+||+++|++|||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~ 48 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNI 48 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3468999999999999999996
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.26 E-value=6.1e-07 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.7
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
+....+|++++|++|+|||||+.+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~ 42 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNA 42 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHH
Confidence 334568999999999999999996
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.23 E-value=1.7e-06 Score=47.80 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.|++++|+.|+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~ 20 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNR 20 (161)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 6899999999999999996
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.22 E-value=2e-06 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|++++|+++||||||+.+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~ 24 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNA 24 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHH
Confidence 3568999999999999999996
No 120
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.19 E-value=2e-06 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.6
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+||+++|++|+|||||+.+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~ 48 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNS 48 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHH
Confidence 34568999999999999999996
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.19 E-value=9e-07 Score=54.60 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|+++||||||+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~ 22 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNL 22 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 57999999999999999996
No 122
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.18 E-value=9.1e-07 Score=51.26 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+++++|++|+|||||+.+ +....+...+.|+.|
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~------l~g~~~~~~~~~~~G 60 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNT------LTNQKSLARTSKTPG 60 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTT------TCCC-----------
T ss_pred CCcEEEEECCCCCCHHHHHHH------HhCCCccccccCCCc
Confidence 457899999999999999986 554443333445544
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.18 E-value=1.6e-06 Score=49.34 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.6
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...|++++|++|||||||+.+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~ 23 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNA 23 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 347999999999999999996
No 124
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=5.7e-06 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.6
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|++|+|||||+.+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~ 56 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINS 56 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHH
Confidence 3468999999999999999986
No 125
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.10 E-value=5e-06 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.5
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++|+++|.+|+|||||+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~ 40 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNS 40 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHH
Confidence 4568999999999999999986
No 126
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.07 E-value=2.5e-06 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++|+++|++|+|||||+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~ 41 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNS 41 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHH
Confidence 3568999999999999999996
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.04 E-value=2.8e-06 Score=51.73 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|++|+|||||+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~ 22 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNA 22 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHH
Confidence 47999999999999999996
No 128
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.04 E-value=4.8e-06 Score=54.37 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=27.4
Q ss_pred ceeeEEEEECCCCChHHHHHhHhhhccccccccccccccceEE
Q psy15257 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~~~~~~~~~~~~~~~~~~~ti~ 52 (65)
...+|++++|+.+||||||+.+ +..+.+.. +.||++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~------l~~~~~~~-~~~T~~ 355 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYK------LKLGQSVT-TIPTVG 355 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHH------HHHSSCCC-CCCCSS
T ss_pred ccceeEEEEcCCCCCHHHHHHH------HhcCCCCC-cCCccc
Confidence 3468999999999999999997 55555443 446665
No 129
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.95 E-value=7e-06 Score=50.33 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.++++++|++++|||||+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~ 22 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQ 22 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 47999999999999999996
No 130
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.92 E-value=1.8e-05 Score=48.17 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++|+++|++|+|||||+.+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~ 58 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNS 58 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 468999999999999999986
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.88 E-value=1.2e-05 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|+++||||||+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~ 20 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNA 20 (256)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4899999999999999996
No 132
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.87 E-value=1.8e-05 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.5
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++|+++|++|+|||||+.+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~ 55 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNS 55 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 468999999999999999996
No 133
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.79 E-value=4e-06 Score=48.89 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+||+++|++|+|||||+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~ 48 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINV 48 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 4568999999999999999996
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.66 E-value=3e-05 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.2
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
+....+|++++|+.++|||||+.+
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~ 53 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNA 53 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHH
Confidence 345678999999999999999996
No 135
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.63 E-value=3.8e-05 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+|+++|++++|||||+.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~ 45 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLEN 45 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHH
Confidence 4567999999999999999996
No 136
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.61 E-value=2.2e-05 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|++|+|||||+.+
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~ 37 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINS 37 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999985
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.61 E-value=4.8e-05 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.3
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|+++||||||+.+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~ 194 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNA 194 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHH
Confidence 458999999999999999996
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.61 E-value=0.00017 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++.++|++|+|||||+.+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~ 27 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNK 27 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 456899999999999999996
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.58 E-value=8.1e-05 Score=47.03 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|++|||||||+.+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~ 186 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKA 186 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 457999999999999999996
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.57 E-value=7.2e-05 Score=48.48 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|++|||||||+.+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~ 199 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNA 199 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 458999999999999999986
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.57 E-value=0.00012 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.4
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+++++|+++||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~ 26 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNN 26 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3457899999999999999996
No 142
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.55 E-value=0.00011 Score=47.49 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=17.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+|+.++|.++||||||+.+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~ 19 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSA 19 (397)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4899999999999999985
No 143
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.54 E-value=5.4e-05 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|++|+|||||+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~ 50 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINS 50 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHH
Confidence 4568899999999999999985
No 144
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.52 E-value=0.00015 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred CCceeeEEEEECCCCChHHHHHhH
Q psy15257 8 PHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 8 ~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+...-+|.++|+++||||||+.+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~ 29 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNN 29 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHH
Confidence 445678999999999999999996
No 145
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.51 E-value=5.7e-05 Score=48.04 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=16.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|.++|.+++|||||+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~ 177 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSV 177 (342)
T ss_dssp CEEEESSTTSSHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHH
Confidence 578999999999999996
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.50 E-value=9.3e-05 Score=47.33 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.1
Q ss_pred eE-EEEECCCCChHHHHHhH
Q psy15257 13 VK-CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~k-vv~lG~~gvGKTsl~~~ 31 (65)
++ ++++|++|+|||||+.+
T Consensus 179 ~~~V~lvG~~naGKSTLln~ 198 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNS 198 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45 88999999999999986
No 147
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.49 E-value=0.0001 Score=48.73 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|+++||||||+.+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~ 252 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNT 252 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 357899999999999999997
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.47 E-value=0.00028 Score=45.22 Aligned_cols=23 Identities=43% Similarity=0.406 Sum_probs=20.4
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+|++++|+.++|||||+.+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~ 27 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQA 27 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHH
Confidence 34568999999999999999986
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=7.2e-05 Score=42.97 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+|+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999985
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.45 E-value=0.00016 Score=46.38 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=20.5
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++++++|..++|||||+.+
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~ 29 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKA 29 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHH
Confidence 35678999999999999999986
No 151
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.42 E-value=8.3e-05 Score=43.79 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
|+++||+|+|||+|+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKK 20 (186)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999999985
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.40 E-value=0.00015 Score=47.01 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=17.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++++|+++||||||+.|
T Consensus 2 ~~v~ivG~pnvGKStL~nr 20 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNK 20 (439)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999999996
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.39 E-value=8.9e-05 Score=43.33 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3678999999999999974
No 154
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.38 E-value=0.00011 Score=42.77 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=18.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++++|.+|+|||+|+.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~ 49 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIER 49 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHH
Confidence 46899999999999999986
No 155
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.37 E-value=0.00011 Score=47.27 Aligned_cols=19 Identities=47% Similarity=0.711 Sum_probs=17.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+++.++|.++||||||+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~ 21 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNA 21 (363)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 6899999999999999995
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.37 E-value=0.00011 Score=42.67 Aligned_cols=18 Identities=39% Similarity=0.697 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999974
No 157
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.36 E-value=0.00018 Score=46.25 Aligned_cols=22 Identities=41% Similarity=0.373 Sum_probs=19.6
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|+.++|||||+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~ 27 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKA 27 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHH
Confidence 3468999999999999999986
No 158
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.36 E-value=0.00011 Score=41.89 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||+++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999999974
No 159
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.36 E-value=9.7e-05 Score=45.45 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.2
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.|++.++|++|+|||+|+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~ 21 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNT 21 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHH
Confidence 48899999999999999974
No 160
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.32 E-value=0.00012 Score=46.16 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.1
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...|+++|++|+|||||+.+
T Consensus 34 lp~I~vvG~~~sGKSSLln~ 53 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLES 53 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 45899999999999999996
No 161
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.30 E-value=0.00024 Score=45.65 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=17.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+++.++|.+++|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~ 20 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNA 20 (368)
T ss_dssp CSEEEECCSSSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5789999999999999985
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.30 E-value=0.0002 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.9
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|++++|+++||||||+.+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~ 214 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNA 214 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHH
Confidence 4568999999999999999996
No 163
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.26 E-value=0.00015 Score=41.37 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.4
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
-+.++|++|+|||+|+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999998
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.24 E-value=0.00015 Score=41.71 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+++..
T Consensus 4 i~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKK 20 (186)
T ss_dssp EEEESSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999999974
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00017 Score=43.18 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+|+..
T Consensus 18 ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999999985
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.22 E-value=0.00022 Score=42.38 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+|+.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHH
Confidence 4578899999999999985
No 167
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.00018 Score=41.39 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 578899999999999974
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.21 E-value=0.00019 Score=42.05 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++++|++|+|||+++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHH
Confidence 3578899999999999985
No 169
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.20 E-value=0.00019 Score=41.98 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|++|+|||+|+..
T Consensus 22 i~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999974
No 170
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.19 E-value=0.00018 Score=46.80 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|+++|++|||||||+.+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~ 42 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNR 42 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46899999999999999996
No 171
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.16 E-value=0.00022 Score=42.29 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 172
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.15 E-value=0.00022 Score=46.19 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|+++|+++||||||+.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~ 22 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNR 22 (436)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 6899999999999999996
No 173
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.15 E-value=0.0003 Score=44.39 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|+++|+.++|||||+.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~ 50 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLEN 50 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 357999999999999999996
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.08 E-value=0.00029 Score=45.95 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||||+.+
T Consensus 159 ~VgLVG~~gAGKSTLL~~ 176 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAA 176 (416)
T ss_dssp SEEEECCGGGCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999999985
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.04 E-value=0.00048 Score=47.24 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=26.6
Q ss_pred CCCCCCCCCceeeEEEEECCCCChHHHHHhH
Q psy15257 1 MLSDNEQPHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 1 m~~~~~~~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
|.+..........+++++|+.++|||||+.+
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~ 31 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTER 31 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHH
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHH
Confidence 6666666667789999999999999999986
No 176
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.04 E-value=0.00037 Score=40.54 Aligned_cols=19 Identities=42% Similarity=0.483 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4578999999999999985
No 177
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.02 E-value=0.00056 Score=44.52 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.++|.++||||||+.+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~ 41 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNV 41 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3457899999999999999985
No 178
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.01 E-value=0.00014 Score=48.85 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++++|+.++|||||+.+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~ 23 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDK 23 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46899999999999999996
No 179
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.00 E-value=0.00037 Score=41.96 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~ 50 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNI 50 (235)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367999999999999973
No 180
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.99 E-value=0.00043 Score=39.18 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|++|+|||++...
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999999875
No 181
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.98 E-value=0.00042 Score=39.59 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~ 52 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRG 52 (158)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577899999999999974
No 182
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.98 E-value=0.0014 Score=42.51 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.7
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++.++|++|+|||+|+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~ 39 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRA 39 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 357899999999999999985
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.97 E-value=0.00034 Score=42.86 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+|+++|+.++|||||+.+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~ 43 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLEN 43 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHH
Confidence 3457899999999999999996
No 184
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00062 Score=38.39 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 4688999999999999974
No 185
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00051 Score=38.29 Aligned_cols=19 Identities=32% Similarity=0.565 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 3578999999999999975
No 186
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.94 E-value=0.00048 Score=39.39 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 468899999999999974
No 187
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.93 E-value=0.00048 Score=40.21 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+.++|++|+|||+|+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346788999999999999974
No 188
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.0006 Score=38.00 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999985
No 189
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.93 E-value=0.00013 Score=48.29 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|+++||||||+.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~ 262 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNR 262 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHH
Confidence 37999999999999999986
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.92 E-value=0.00039 Score=39.54 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|++|+|||+|+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp CEEEECCSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4688999999999999974
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.89 E-value=0.00055 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|++|+|||+|+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 467899999999999974
No 192
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.89 E-value=0.00041 Score=45.70 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.0
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|++++|||||+.+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~ 243 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNA 243 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 357899999999999999996
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.89 E-value=0.00057 Score=38.35 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 6 ~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999999974
No 194
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.00068 Score=39.26 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||++...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 4689999999999999975
No 195
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.87 E-value=0.00057 Score=41.80 Aligned_cols=17 Identities=18% Similarity=0.518 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 35 ~~liG~nGsGKSTLlk~ 51 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRC 51 (262)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999999973
No 196
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.86 E-value=0.001 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.4
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+|++++|+.++|||||+.+
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~ 43 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGR 43 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHH
T ss_pred cCCceEEEEEECCCCCHHHHHHH
Confidence 34568999999999999999986
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.86 E-value=0.00059 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CEEEEECSTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3688999999999999974
No 198
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.86 E-value=0.00065 Score=40.95 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSA 50 (237)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 199
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.86 E-value=0.00067 Score=40.93 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999973
No 200
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.86 E-value=0.00046 Score=41.25 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=15.1
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 33 ~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYI 49 (224)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999999973
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.85 E-value=0.0007 Score=38.16 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|.+|+|||++...
T Consensus 5 ~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999999975
No 202
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.84 E-value=0.00075 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++.++|+.++|||||+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~ 24 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDH 24 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHH
Confidence 347899999999999999986
No 203
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.84 E-value=0.00069 Score=41.09 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 204
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.84 E-value=0.00064 Score=41.18 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 26 ~~~liG~nGsGKSTLl~~ 43 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLEL 43 (240)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999973
No 205
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.82 E-value=0.00083 Score=37.15 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||++...
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999985
No 206
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.82 E-value=0.00042 Score=40.97 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=12.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+++..
T Consensus 29 ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EEEEECSCC----CHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999974
No 207
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.81 E-value=0.00067 Score=41.93 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 37 ~~iiGpnGsGKSTLl~~ 53 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQN 53 (275)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999999973
No 208
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.81 E-value=0.00056 Score=41.88 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=17.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
++++++|.+|||||||+.+
T Consensus 100 ~~v~~vG~~~vGKSslin~ 118 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINK 118 (262)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHH
Confidence 5899999999999999986
No 209
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00062 Score=39.89 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CEEEESCCSSCHHHHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 578899999999999975
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.80 E-value=0.00065 Score=44.60 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.++|++|+|||+|+..
T Consensus 42 i~~vaLvG~nGaGKSTLln~ 61 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDT 61 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHH
Confidence 35699999999999999974
No 211
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.80 E-value=0.00068 Score=41.25 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINV 52 (257)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999973
No 212
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00088 Score=39.97 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999999974
No 213
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.79 E-value=0.00073 Score=39.16 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5688999999999999874
No 214
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.79 E-value=0.00075 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4688999999999999974
No 215
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.78 E-value=0.00065 Score=42.97 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++..
T Consensus 129 g~vi~lvG~nGaGKTTll~~ 148 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAK 148 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999999985
No 216
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.78 E-value=0.00086 Score=40.18 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~ 53 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMM 53 (229)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999973
No 217
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.78 E-value=0.00074 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 52 i~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHH
Confidence 367899999999999973
No 218
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00074 Score=40.71 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 34 ~~~l~G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSA 51 (240)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999973
No 219
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.76 E-value=0.00084 Score=42.42 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.7
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++.++|++|+|||+|+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~ 189 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNK 189 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHH
Confidence 46889999999999999974
No 220
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.76 E-value=0.00086 Score=41.45 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 49 ~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367999999999999973
No 221
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.76 E-value=0.00077 Score=41.37 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 40 ~~liG~nGsGKSTLl~~ 56 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRL 56 (266)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 57899999999999973
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.76 E-value=0.00076 Score=41.26 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+++..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp EEEEEECSTTCSHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHH
Confidence 3578999999999999974
No 223
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.75 E-value=0.00081 Score=40.15 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 38 ~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999999973
No 224
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.001 Score=37.75 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||++...
T Consensus 6 ~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4688999999999999985
No 225
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.75 E-value=0.00088 Score=40.91 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999973
No 226
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.74 E-value=0.00089 Score=41.14 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999973
No 227
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.74 E-value=0.00084 Score=40.06 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+++..
T Consensus 52 ~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARA 68 (254)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999974
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.73 E-value=0.00064 Score=39.50 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|++|+|||+|+..
T Consensus 27 ~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999999975
No 229
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.73 E-value=0.00079 Score=39.98 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 24 ~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp EEEEECCTTSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999974
No 230
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.73 E-value=0.00094 Score=40.48 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999973
No 231
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.73 E-value=0.00096 Score=40.89 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999999973
No 232
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.72 E-value=0.0007 Score=37.78 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 44 ~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp CEEEEESCGGGCHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 3578999999999999975
No 233
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.72 E-value=0.00099 Score=40.56 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~liG~NGsGKSTLlk~ 45 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367999999999999974
No 234
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.69 E-value=0.00093 Score=40.82 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 43 i~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999973
No 235
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0026 Score=41.03 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.7
Q ss_pred eEEEEECCCCChHHHHHhHhhhc
Q psy15257 13 VKCVVVGDTAVGKTRLICARACN 35 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~~~~~ 35 (65)
..|.++|.++||||||+.+ +++
T Consensus 73 a~V~ivG~PNvGKSTL~n~-Lt~ 94 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSK-LTG 94 (376)
T ss_dssp EEEEEECCCCHHHHHHHHH-HHS
T ss_pred CeEEEECCCCCCHHHHHHH-HhC
Confidence 5799999999999999984 444
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.68 E-value=0.0011 Score=38.53 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 53 ~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4688999999999999975
No 237
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.67 E-value=0.00096 Score=40.81 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 35 ~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367899999999999973
No 238
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.67 E-value=0.0011 Score=38.64 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.++.++|++|+|||+++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4799999999999999974
No 239
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0011 Score=40.64 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 32 ~~~i~G~NGsGKSTLlk~ 49 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRA 49 (263)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567999999999999974
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.66 E-value=0.001 Score=41.58 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+++..
T Consensus 103 ~vi~lvG~nGsGKTTll~~ 121 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAK 121 (304)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4678899999999999985
No 241
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.66 E-value=0.00096 Score=42.76 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 44 ~~llGpnGsGKSTLLr~ 60 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRL 60 (355)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 67899999999999973
No 242
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.65 E-value=0.0012 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+++++|..++|||||+.+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~ 84 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQY 84 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999996
No 243
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.65 E-value=0.001 Score=38.56 Aligned_cols=19 Identities=42% Similarity=0.407 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5688999999999999974
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.65 E-value=0.0016 Score=36.51 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|.+|+|||++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3588999999999999985
No 245
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.65 E-value=0.00078 Score=37.92 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp EEEEESSSTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999999974
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.64 E-value=0.0012 Score=38.19 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|.+|+|||+++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999975
No 247
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.001 Score=42.72 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 32 ~~llGpnGsGKSTLLr~ 48 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYT 48 (362)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCchHHHHHHH
Confidence 67899999999999973
No 248
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.00099 Score=42.72 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.1
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 32 ~~llGpnGsGKSTLLr~ 48 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLM 48 (359)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEEcCCCchHHHHHHH
Confidence 67899999999999973
No 249
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.00077 Score=43.31 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=15.1
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 33 ~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRC 49 (359)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCchHHHHHHH
Confidence 67899999999999973
No 250
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.64 E-value=0.0012 Score=40.22 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~ 50 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDL 50 (253)
T ss_dssp EEEEECCSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999973
No 251
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.62 E-value=0.0011 Score=42.75 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=15.1
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 40 ~~llGpnGsGKSTLLr~ 56 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRM 56 (372)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCChHHHHHHH
Confidence 57899999999999973
No 252
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.62 E-value=0.001 Score=42.74 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 32 ~~llGpnGsGKSTLLr~ 48 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRM 48 (372)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCcHHHHHHHH
Confidence 67899999999999973
No 253
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.62 E-value=0.0013 Score=38.16 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++++.|++|+|||+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999999975
No 254
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.62 E-value=0.0011 Score=42.97 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.2
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 32 ~~llGpsGsGKSTLLr~ 48 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRM 48 (381)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEcCCCchHHHHHHH
Confidence 67899999999999973
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.61 E-value=0.0014 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|..|+|||+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 588999999999999875
No 256
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.61 E-value=0.0014 Score=38.18 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++++.|+.|+|||++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999999975
No 257
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.60 E-value=0.0013 Score=37.84 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4688999999999999874
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0015 Score=36.91 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999875
No 259
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.59 E-value=0.0013 Score=37.10 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.|++.|.+|+|||+++.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999975
No 260
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.0014 Score=37.30 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||+++..
T Consensus 41 ~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIA 57 (226)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999975
No 261
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.58 E-value=0.0009 Score=42.72 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 28 ~~~llGpnGsGKSTLLr~ 45 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLEL 45 (348)
T ss_dssp EEEEECCCTHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHH
Confidence 367899999999999973
No 262
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.58 E-value=0.0014 Score=37.63 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999999975
No 263
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.58 E-value=0.00097 Score=41.88 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 82 ~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRL 99 (306)
T ss_dssp EEEEESSSCHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHH
Confidence 478999999999999973
No 264
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.57 E-value=0.0045 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++++++|..++|||+|+.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~ 36 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQ 36 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHH
Confidence 34568999999999999999986
No 265
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.57 E-value=0.0013 Score=39.89 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+|+..
T Consensus 76 vll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARA 92 (278)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCcChHHHHHHH
Confidence 89999999999999974
No 266
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.56 E-value=0.0013 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 128 ~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678999999999999974
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0013 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 4678999999999999985
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.56 E-value=0.0019 Score=37.28 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=18.6
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....|++.|..|+|||++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3446799999999999999875
No 269
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.56 E-value=0.002 Score=38.19 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.8
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+.+.|++|+|||+++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 345788999999999999974
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.55 E-value=0.0019 Score=39.81 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=17.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..-+++.|++|+|||+++.+
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999999985
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.54 E-value=0.001 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++|++|+|||+++..
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 357889999999999975
No 272
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.53 E-value=0.0013 Score=40.81 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 167 i~~l~G~sG~GKSTLln~ 184 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSR 184 (302)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999999985
No 273
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.52 E-value=0.0015 Score=38.96 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 46 ~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 3589999999999999975
No 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.51 E-value=0.0014 Score=40.58 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 171 iv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 467899999999999975
No 275
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.50 E-value=0.0016 Score=37.64 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+|+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 467889999999999975
No 276
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.50 E-value=0.0014 Score=40.97 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+|+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 478899999999999974
No 277
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=40.16 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.8
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
++++|++|+|||+|+..
T Consensus 47 vlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp EEEESSTTSCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 89999999999999974
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.50 E-value=0.0019 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|.+|+|||+++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHH
Confidence 4688999999999999985
No 279
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.49 E-value=0.0033 Score=41.44 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|..++|||||+.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~ 38 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKV 38 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHH
Confidence 3468999999999999999986
No 280
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.49 E-value=0.0029 Score=36.02 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+++.|.+|+|||+++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999975
No 281
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.47 E-value=0.0013 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.3
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+|++++|+.++|||||+.+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~ 52 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGR 52 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 468999999999999999986
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.47 E-value=0.0018 Score=37.54 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++++|++|+|||+++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 3578899999999999985
No 283
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.45 E-value=0.0029 Score=40.03 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|.+|+|||||+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~ 93 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEY 93 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHH
Confidence 57899999999999999985
No 284
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.45 E-value=0.0014 Score=40.79 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~ 83 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMM 83 (290)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467999999999999973
No 285
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.002 Score=43.71 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|++++|+.++|||||+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~ 186 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGR 186 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHH
Confidence 3468999999999999999986
No 286
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=42.44 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 49 ~~~llGpsGsGKSTLLr~ 66 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSA 66 (390)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 367999999999999963
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.43 E-value=0.0015 Score=37.61 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.++.++|++|+|||+++..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3689999999999999974
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.42 E-value=0.0016 Score=41.80 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||||+..
T Consensus 217 ~~~lvG~sG~GKSTLln~ 234 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNA 234 (358)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCccHHHHHHH
Confidence 578999999999999985
No 289
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.41 E-value=0.0029 Score=35.77 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|..|+|||++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999999874
No 290
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.41 E-value=0.0023 Score=36.91 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+.+.++|++|+|||++...
T Consensus 3 ~~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4688999999999999974
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.002 Score=38.95 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||++..+
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478899999999999975
No 292
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.40 E-value=0.0018 Score=40.60 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=17.8
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+.++|++|+|||+|+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 346788999999999999974
No 293
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.40 E-value=0.00093 Score=42.67 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=15.5
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 33 ~~~llGpnGsGKSTLLr~ 50 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRI 50 (353)
T ss_dssp EEEEECSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367899999999999973
No 294
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.38 E-value=0.0019 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp SEEEEESSSSSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 3589999999999999975
No 295
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.002 Score=35.62 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||.++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp SCEEEESSTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 4589999999999999974
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.37 E-value=0.0019 Score=41.63 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.6
Q ss_pred EEEECCCCChHHHHHh
Q psy15257 15 CVVVGDTAVGKTRLIC 30 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~ 30 (65)
+.++|++|+|||+|+.
T Consensus 57 ~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 57 YGVIGASGAGKSTLIR 72 (366)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCchHHHHHH
Confidence 5789999999999996
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.37 E-value=0.0034 Score=38.95 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=18.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+.+.|++|+|||+++..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456889999999999999974
No 298
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.37 E-value=0.0021 Score=38.04 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 40 ~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999999975
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.36 E-value=0.0022 Score=36.34 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|.+|+|||++...
T Consensus 6 ~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999975
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.36 E-value=0.0038 Score=39.43 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++++|..|+|||+++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 346899999999999999986
No 301
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.36 E-value=0.0022 Score=39.59 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|.++||||||+.+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~ 139 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINR 139 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCceEEEEecCCCchHHHHHH
Confidence 457899999999999999986
No 302
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.34 E-value=0.0035 Score=41.88 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.6
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+++++|.+++|||||+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~ 32 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEK 32 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHH
Confidence 3467999999999999999986
No 303
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.33 E-value=0.0027 Score=40.66 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|+.++|||||+.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~ 30 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAA 30 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHH
Confidence 3568999999999999999986
No 304
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.33 E-value=0.0021 Score=41.68 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|+.++|||||+.+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~ 25 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGR 25 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHH
Confidence 468999999999999999996
No 305
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0023 Score=41.06 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+++..
T Consensus 158 ~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4678999999999999985
No 306
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.001 Score=38.49 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 307
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.31 E-value=0.0022 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++|+++|+.++|||||+.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNa 88 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNA 88 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 468999999999999999986
No 308
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.30 E-value=0.0032 Score=37.73 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++.|++|+|||++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 346899999999999999985
No 309
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.0023 Score=39.43 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 39 ~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp SEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 578899999999999975
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0026 Score=38.29 Aligned_cols=19 Identities=32% Similarity=0.263 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999999974
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.29 E-value=0.0031 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|..|+|||++...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEM 29 (184)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999999974
No 312
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.29 E-value=0.0021 Score=41.00 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 125 ~i~I~GptGSGKTTlL~~ 142 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999974
No 313
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.29 E-value=0.0025 Score=38.90 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|+.|+|||+|+.+
T Consensus 33 ~v~i~G~~G~GKT~Ll~~ 50 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRA 50 (350)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHH
Confidence 578899999999999985
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.28 E-value=0.0044 Score=35.59 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.7
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++.|..|+|||++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345789999999999999874
No 315
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.28 E-value=0.0027 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|++|+|||+|+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999999985
No 316
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.28 E-value=0.0045 Score=39.12 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.4
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+-+.++|++|+|||+++..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456788999999999999974
No 317
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.28 E-value=0.0026 Score=38.42 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 51 ~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999999975
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.27 E-value=0.0031 Score=36.47 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=17.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788999999999999974
No 319
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.27 E-value=0.0024 Score=38.75 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp SEEEEESSSSSCHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4688999999999999975
No 320
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.25 E-value=0.0032 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|..++|||||+.+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~ 196 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGR 196 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHH
Confidence 4568999999999999999986
No 321
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.25 E-value=0.0026 Score=40.74 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+|..+
T Consensus 42 lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999999986
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.25 E-value=0.0037 Score=35.81 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++.|..|+|||+++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 5789999999999999975
No 323
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.25 E-value=0.0031 Score=40.36 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++++|+.++|||||+.+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~ 22 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAA 22 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHH
Confidence 58999999999999999986
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.24 E-value=0.0026 Score=40.65 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||+++..
T Consensus 137 ~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp EEEEEECSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3588999999999999974
No 325
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.24 E-value=0.0033 Score=40.21 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++++|.+++|||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq 52 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQ 52 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHH
Confidence 4468999999999999999986
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0029 Score=36.12 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.7
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.+.|.+|+|||++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999999974
No 327
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.23 E-value=0.0022 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|++|+|||+++..
T Consensus 46 ~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCEEEEECTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578899999999999975
No 328
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.22 E-value=0.0029 Score=36.47 Aligned_cols=18 Identities=39% Similarity=0.320 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+|+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999999985
No 329
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.21 E-value=0.0045 Score=37.22 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|++|+|||+++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788999999999999975
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.18 E-value=0.0036 Score=37.35 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4688999999999999974
No 331
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.17 E-value=0.0025 Score=43.49 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.5
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++.++|++|+|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~ 28 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEA 28 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHH
Confidence 4467999999999999999986
No 332
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.17 E-value=0.003 Score=40.21 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.||+|+|||+|..+
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 467899999999999986
No 333
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.16 E-value=0.0031 Score=38.29 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.2
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|++|+|||+++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999999964
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.15 E-value=0.0031 Score=40.05 Aligned_cols=19 Identities=47% Similarity=0.555 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||+|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp CCEEEEESSSSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3688999999999999974
No 335
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.15 E-value=0.01 Score=41.62 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++++|+.++|||||+.+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~ 38 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDS 38 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999996
No 336
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.15 E-value=0.0081 Score=35.63 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.0
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....+++.|..|||||+++.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~ 33 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGE 33 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHH
Confidence 4457788999999999999986
No 337
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.14 E-value=0.0021 Score=39.31 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|+.|+|||+|+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~ 49 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKI 49 (357)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 578899999999999985
No 338
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.14 E-value=0.0036 Score=38.96 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+|+..
T Consensus 153 ~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999999874
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.13 E-value=0.0039 Score=37.48 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....++++|++|+|||++...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346789999999999999975
No 340
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.13 E-value=0.0029 Score=35.56 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.8
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
.+++|++|+|||+++..
T Consensus 26 ~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46789999999999875
No 341
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0047 Score=34.85 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++.|..|+|||++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999874
No 342
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.12 E-value=0.0034 Score=38.96 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999999975
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.11 E-value=0.0043 Score=35.69 Aligned_cols=20 Identities=20% Similarity=-0.067 Sum_probs=17.5
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...|++.|..|+|||++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 35789999999999999975
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.11 E-value=0.004 Score=36.39 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|..|+|||++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5799999999999999875
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.09 E-value=0.0034 Score=42.08 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 4678999999999999975
No 346
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.09 E-value=0.0035 Score=38.63 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 57 ~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 589999999999999975
No 347
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.08 E-value=0.0052 Score=37.27 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4689999999999999974
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.08 E-value=0.0032 Score=37.02 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=17.2
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|..|+|||+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5799999999999999975
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.08 E-value=0.0043 Score=35.47 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++.|..|+|||++...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 4789999999999999975
No 350
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.0028 Score=38.98 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=15.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++..
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3567779999999999975
No 351
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.07 E-value=0.0049 Score=38.78 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+..
T Consensus 173 ~v~i~G~~GsGKTTll~~ 190 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKS 190 (330)
T ss_dssp CEEEEESTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 352
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.07 E-value=0.0045 Score=40.45 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++++|..++|||||+.+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~ 26 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGH 26 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHH
Confidence 568999999999999999996
No 353
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.07 E-value=0.003 Score=39.58 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4578999999999999986
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0034 Score=38.79 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||+++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp EEEECSTTSSHHHHHHT
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999974
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.06 E-value=0.0044 Score=34.46 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+|++.|..|+|||++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999999874
No 356
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.06 E-value=0.0027 Score=38.73 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+|+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 467889999999999975
No 357
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.06 E-value=0.0022 Score=35.46 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp SCEEEEEETTCCHHHHHGG
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 3588999999999999974
No 358
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.06 E-value=0.0034 Score=38.62 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHH
Confidence 3588999999999999974
No 359
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.05 E-value=0.0033 Score=36.66 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++++.|..|+|||++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999999875
No 360
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.05 E-value=0.0038 Score=37.55 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALE 53 (205)
T ss_dssp EEEEEECCCTTTTHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578999999999999986
No 361
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.04 E-value=0.0047 Score=40.31 Aligned_cols=21 Identities=33% Similarity=0.181 Sum_probs=18.7
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+|+++|..|+|||++..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~ 58 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKK 58 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 356899999999999999986
No 362
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.04 E-value=0.0028 Score=39.21 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|++|+|||+++..
T Consensus 45 ~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCEEECBCTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4688999999999999975
No 363
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.04 E-value=0.0011 Score=41.66 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||||+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~ 192 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNA 192 (307)
T ss_dssp SEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3678999999999999985
No 364
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.03 E-value=0.0018 Score=43.15 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.7
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++++|+.++|||||+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~ 23 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEY 23 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346899999999999999986
No 365
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.03 E-value=0.0044 Score=39.07 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+|+..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~ 74 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDA 74 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999999985
No 366
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.02 E-value=0.0034 Score=40.92 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+|+..
T Consensus 70 ~~valvG~nGaGKSTLln~ 88 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINT 88 (413)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4788999999999999974
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.02 E-value=0.0046 Score=35.09 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.|++.|..|+|||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999985
No 368
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.02 E-value=0.0045 Score=36.66 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|+.|+||++...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999998875
No 369
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.02 E-value=0.0048 Score=39.44 Aligned_cols=19 Identities=47% Similarity=0.534 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 4688999999999999975
No 370
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0075 Score=38.49 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.4
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....|++++|.+++|||+++.+
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq 28 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQ 28 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHH
Confidence 45678999999999999999986
No 371
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.00 E-value=0.0056 Score=37.25 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.4
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+|+++.|.+|||||+++.+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHH
Confidence 358999999999999999765
No 372
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.00 E-value=0.0043 Score=37.15 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 30 ~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHH
Confidence 4688999999999999974
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.99 E-value=0.0029 Score=37.05 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++.|+.|+|||++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999875
No 374
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.99 E-value=0.0057 Score=38.86 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++++|++|+|||+|..+
T Consensus 11 ~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHH
Confidence 3467899999999999986
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.98 E-value=0.0047 Score=35.82 Aligned_cols=19 Identities=37% Similarity=0.312 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|.+|+|||+++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~ 23 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK 23 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578999999999999986
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.98 E-value=0.0049 Score=36.33 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|..|+|||++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999999975
No 377
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.003 Score=41.60 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
.+.++|++|+|||+|+.
T Consensus 140 ~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp CEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999997
No 378
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.95 E-value=0.0045 Score=38.96 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 4689999999999999975
No 379
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.94 E-value=0.0036 Score=39.77 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~ 90 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGM 90 (347)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678999999999999863
No 380
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.94 E-value=0.0041 Score=41.63 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.4
Q ss_pred EEEEECCCCChHHHHHh
Q psy15257 14 KCVVVGDTAVGKTRLIC 30 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~ 30 (65)
.+.++|++|+|||+|+.
T Consensus 369 ~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEECCCCChHHHHHH
Confidence 47799999999999997
No 381
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.94 E-value=0.0065 Score=35.56 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=19.5
Q ss_pred CCCCCCCceeeEEEEECCCCChHHHHHhH
Q psy15257 3 SDNEQPHQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 3 ~~~~~~~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.++-......+.+.+.|..|+|||++...
T Consensus 3 ~~~~~~~~~~~iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 3 SDKIHHHHHHMVIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp -------CCEEEEEEECSTTSSHHHHHHH
T ss_pred cccccccccceEEEEECCCCCCHHHHHHH
Confidence 33444455678899999999999999974
No 382
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.93 E-value=0.0043 Score=41.53 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 371 ~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANL 388 (582)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.92 E-value=0.0051 Score=34.28 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|..|+|||++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CEEEESCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999999875
No 384
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.92 E-value=0.0035 Score=41.18 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++|++|+|||+++.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688899999999999986
No 385
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.92 E-value=0.0037 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 159 ~~~IvG~sGsGKSTLl~~ 176 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGM 176 (438)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678999999999999863
No 386
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.91 E-value=0.0046 Score=35.84 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=17.2
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35788999999999999874
No 387
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.91 E-value=0.0036 Score=38.88 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3688999999999999975
No 388
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.91 E-value=0.0026 Score=43.04 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||||+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~ 64 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEA 64 (608)
T ss_dssp CEECCCCTTSCHHHHHHH
T ss_pred eEEEECCCCChHHHHHHH
Confidence 489999999999999974
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.90 E-value=0.006 Score=34.34 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|..|+|||++...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999999874
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.90 E-value=0.0037 Score=41.83 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASL 388 (582)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.90 E-value=0.0043 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 169 ii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999999975
No 392
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.89 E-value=0.0045 Score=40.50 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|++|||||+++..
T Consensus 202 ~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CEEEEESCTTTTTHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3678999999999999975
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.89 E-value=0.0049 Score=41.18 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~ 66 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKI 66 (538)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999973
No 394
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.89 E-value=0.0047 Score=38.27 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 52 ~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CEEEEECSSSSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4689999999999999975
No 395
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.88 E-value=0.0063 Score=38.61 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..++++|++|+|||++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3688999999999999975
No 396
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.88 E-value=0.0034 Score=40.10 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=17.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
+++++|..++|||||+.+
T Consensus 23 ~i~iiG~~d~GKSTL~~~ 40 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAAN 40 (370)
T ss_dssp EEEEEESTTSSHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 899999999999999996
No 397
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.88 E-value=0.0054 Score=42.11 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=20.4
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....+++++|..++|||||+.+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~ 29 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTER 29 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHH
Confidence 34568999999999999999986
No 398
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.88 E-value=0.0054 Score=38.01 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.3
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++..
T Consensus 80 g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35688999999999999974
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.87 E-value=0.0065 Score=36.37 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=18.1
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.|.+.|++|+|||++...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 346799999999999999874
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.86 E-value=0.0058 Score=40.70 Aligned_cols=18 Identities=50% Similarity=0.702 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 262 ~i~I~GptGSGKTTlL~a 279 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNA 279 (511)
T ss_dssp CEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999999974
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.86 E-value=0.0061 Score=36.02 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...|++.|..|+|||++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 36799999999999999875
No 402
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0043 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+++.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999999875
No 403
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.85 E-value=0.0045 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4678899999999999985
No 404
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.85 E-value=0.005 Score=34.93 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|..|+|||++...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999975
No 405
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.85 E-value=0.0041 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=16.4
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+++..
T Consensus 47 ~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 688999999999999975
No 406
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.83 E-value=0.0049 Score=35.04 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|..|+|||++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999874
No 407
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.83 E-value=0.0046 Score=37.70 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999874
No 408
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.83 E-value=0.0054 Score=38.46 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.2
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|++|+|||+++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 34689999999999999974
No 409
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.82 E-value=0.0048 Score=39.25 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=14.6
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
.+++|++|+|||+|+-.
T Consensus 26 ~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999999864
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.82 E-value=0.0016 Score=37.61 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|.+|+|||+++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478899999999999975
No 411
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.81 E-value=0.0073 Score=34.12 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|.+|+|||+++..
T Consensus 6 ~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4688999999999999874
No 412
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.81 E-value=0.0041 Score=41.72 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~ 389 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSL 389 (595)
T ss_dssp EEEEECCTTSSSTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999999973
No 413
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.0056 Score=37.64 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.6
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|++|+|||+++..
T Consensus 61 ~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILA 77 (353)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 88999999999999974
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.80 E-value=0.0066 Score=34.26 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|..|+|||++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0051 Score=38.20 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.6
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.||+|+|||+++..
T Consensus 49 ~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999999974
No 416
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.78 E-value=0.0043 Score=41.43 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....+++++|+.++|||||+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~ 32 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEK 32 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHH
Confidence 4568999999999999999996
No 417
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.78 E-value=0.0099 Score=39.36 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+.++|.+|+|||+|+..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~ 171 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQ 171 (549)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4578899999999999985
No 418
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.77 E-value=0.0036 Score=38.20 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 39 ~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCEEECCTTCCCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3588999999999999975
No 419
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.76 E-value=0.0053 Score=40.84 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 31 ~~~liG~nGsGKSTLl~~ 48 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAG 48 (483)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 467899999999999973
No 420
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.0055 Score=38.18 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++..
T Consensus 46 ~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp SEEEEESSSSSCHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4688999999999999975
No 421
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=0.0056 Score=41.14 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 371 ~~~ivG~sGsGKSTll~~ 388 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNL 388 (587)
T ss_dssp EEEEECSSSSSHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999973
No 422
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.74 E-value=0.0049 Score=41.47 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 383 ~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp EEEEECCTTSSTTHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 578999999999999973
No 423
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.73 E-value=0.0047 Score=38.07 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 48 ~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp CEEEESCCCHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 588999999999999975
No 424
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.73 E-value=0.0022 Score=38.38 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 46 ~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CCCCBCSSCSSHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 378899999999999975
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.73 E-value=0.0071 Score=36.66 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
.+.+.+.|++|+|||++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46799999999999999974
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.72 E-value=0.0069 Score=34.25 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.|++.|.+|+|||++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp SEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999999874
No 427
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.72 E-value=0.0088 Score=37.91 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++++|.+.+|||+++.+
T Consensus 5 ~~~~klLlLG~geSGKSTi~KQ 26 (327)
T 3ohm_A 5 RRELKLLLLGTGESGKSTFIKQ 26 (327)
T ss_dssp CCEEEEEEECSTTSSHHHHHHH
T ss_pred cccceEEEEcCCCccHHHHHHH
Confidence 4578999999999999999986
No 428
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.71 E-value=0.0084 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++.|.+|+|||+++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4689999999999999975
No 429
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.71 E-value=0.0055 Score=39.80 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+|+..
T Consensus 132 ~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 430
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.68 E-value=0.0064 Score=38.31 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 118 ~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp SEEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999999975
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.68 E-value=0.0046 Score=37.47 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|++|+|||+|+..
T Consensus 32 i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 467889999999999975
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.67 E-value=0.0072 Score=35.15 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|.+|+|||+++..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4688899999999999974
No 433
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.65 E-value=0.0058 Score=40.76 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 110 ~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp EEEEESSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999974
No 434
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.64 E-value=0.0062 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=17.1
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..|++.|..|+|||+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5789999999999999975
No 435
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.64 E-value=0.0074 Score=36.68 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|.+|+|||++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999999985
No 436
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.62 E-value=0.0098 Score=34.58 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
+.+.+.|.+|+|||+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5789999999999999974
No 437
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.62 E-value=0.0064 Score=40.08 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++|.+|+|||+++.+
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 46789999999999999886
No 438
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.62 E-value=0.0054 Score=34.50 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=12.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|..|+|||++...
T Consensus 6 ~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CEEEEECCC----CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999999975
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.60 E-value=0.0063 Score=35.67 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
.+++|++|+|||+++..
T Consensus 26 ~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 46779999999999975
No 440
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.59 E-value=0.0069 Score=41.14 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=14.6
Q ss_pred EEEECCCCChHHHHHh
Q psy15257 15 CVVVGDTAVGKTRLIC 30 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~ 30 (65)
+.++|++|+|||+|+.
T Consensus 351 vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVN 366 (670)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEEEeeCCCCHHHHHH
Confidence 6799999999999984
No 441
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.58 E-value=0.0072 Score=38.33 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 149 ~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp SEEEEESSTTSCHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999999975
No 442
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.58 E-value=0.007 Score=39.92 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
--+.+.|++|+|||+|+..
T Consensus 148 ~~v~I~G~~GiGKTtLa~~ 166 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAE 166 (591)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 3578999999999999985
No 443
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.56 E-value=0.0075 Score=38.46 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=19.1
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++++|.+.+|||+++.+
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQ 24 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQ 24 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHH
Confidence 3568999999999999999975
No 444
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.55 E-value=0.0042 Score=38.20 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 47 ~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp CEEEECCGGGCTTHHHHH
T ss_pred eEEEECCCCccHHHHHHH
Confidence 489999999999999975
No 445
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.55 E-value=0.0077 Score=37.99 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 85 ~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 3588999999999999975
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.007 Score=41.14 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 105 i~~LvGpNGaGKSTLLki 122 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKI 122 (608)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 477899999999999974
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.54 E-value=0.0072 Score=35.35 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.+|++.|..|+|||++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5789999999999999875
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.49 E-value=0.0085 Score=40.68 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 119 ~~~LiG~NGsGKSTLlki 136 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKI 136 (607)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 578999999999999974
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.47 E-value=0.0079 Score=40.28 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 27 i~gLiGpNGaGKSTLlki 44 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKI 44 (538)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999999973
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.47 E-value=0.011 Score=36.18 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=18.2
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.|.+.|.+|+|||++...
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 356799999999999999974
No 451
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.47 E-value=0.014 Score=34.79 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+++.|+.|+|||+++.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45688999999999999975
No 452
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.46 E-value=0.015 Score=34.85 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-|+++|+.|+||++...+
T Consensus 31 iI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEECCTTCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356789999999998875
No 453
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.44 E-value=0.0081 Score=39.28 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|++|+|||+++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 589999999999999974
No 454
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.44 E-value=0.0068 Score=39.72 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|..++|||||+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~ 62 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGN 62 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHH
Confidence 4568999999999999999986
No 455
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.43 E-value=0.0085 Score=40.71 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.3
Q ss_pred EEEEECCCCChHHHHH
Q psy15257 14 KCVVVGDTAVGKTRLI 29 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~ 29 (65)
.+.++|++|+|||+|+
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 3679999999999996
No 456
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.43 E-value=0.0069 Score=39.67 Aligned_cols=18 Identities=39% Similarity=0.566 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+|..+
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 467899999999999985
No 457
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.43 E-value=0.0053 Score=38.25 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+++..
T Consensus 6 v~~i~G~~GaGKTTll~~ 23 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRH 23 (318)
T ss_dssp EEEEEESSSSSCHHHHHH
T ss_pred EEEEEecCCCCHHHHHHH
Confidence 567889999999999985
No 458
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.42 E-value=0.0075 Score=37.80 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=14.3
Q ss_pred EEECCCCChHHHHHhH
Q psy15257 16 VVVGDTAVGKTRLICA 31 (65)
Q Consensus 16 v~lG~~gvGKTsl~~~ 31 (65)
+++|++|.|||+++-.
T Consensus 27 ~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 5779999999999975
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.39 E-value=0.012 Score=35.34 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.9
Q ss_pred eeeEEEEECCCCChHHHHHhH
Q psy15257 11 ELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 11 ~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++.|..|+|||+++..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 346789999999999999974
No 460
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.39 E-value=0.0081 Score=37.16 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|+.|+|||+++..
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999999975
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.38 E-value=0.0089 Score=38.49 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+.++|++|+|||+++..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3678899999999999974
No 462
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.37 E-value=0.013 Score=37.31 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.4
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
....|++++|.+.+|||+++.+
T Consensus 30 ~~~~klLlLG~geSGKST~~KQ 51 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQ 51 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHH
Confidence 4578999999999999999986
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.33 E-value=0.01 Score=39.70 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 296 i~~i~G~nGsGKSTLl~~ 313 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARI 313 (538)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999999974
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.31 E-value=0.011 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 314 ~~~i~G~NGsGKSTLlk~ 331 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKM 331 (538)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 465
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.011 Score=35.80 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+++.|+.|+|||+++..
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 388999999999999975
No 466
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.011 Score=38.79 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.||+|+|||+++..
T Consensus 207 rGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CEEEEESCTTTTHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999999975
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.27 E-value=0.011 Score=40.12 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.++|++|+|||+|+.-
T Consensus 384 i~~i~G~NGsGKSTLlk~ 401 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKM 401 (607)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 468
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.26 E-value=0.0074 Score=37.51 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=15.6
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++|++|+|||+|+..
T Consensus 26 ~~~i~G~NGsGKS~ll~a 43 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDA 43 (322)
T ss_dssp EEEEECCTTTCSTHHHHH
T ss_pred cEEEECCCCCcHHHHHHH
Confidence 357889999999999976
No 469
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.26 E-value=0.011 Score=38.43 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++..
T Consensus 168 ~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999999975
No 470
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.25 E-value=0.015 Score=32.47 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|..|+|||++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999999974
No 471
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.24 E-value=0.011 Score=39.01 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.|++|+|||+++..
T Consensus 78 ~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4688999999999999975
No 472
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.24 E-value=0.011 Score=38.11 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.8
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-++++|.+|+|||+++.+
T Consensus 259 ~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4578899999999999985
No 473
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.22 E-value=0.012 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.5
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||.++..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp SCEEEESCTTSCHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHH
Confidence 4588999999999999874
No 474
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.01 Score=35.91 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|+.|+|||+++..
T Consensus 45 ~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHC 61 (323)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 89999999999999875
No 475
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.21 E-value=0.01 Score=39.52 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-++++|++|+|||+|+..
T Consensus 66 GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 389999999999999974
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.21 E-value=0.0083 Score=39.67 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.9
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+.++|++|+|||+|+..
T Consensus 41 ~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 467899999999999975
No 477
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.21 E-value=0.0084 Score=37.52 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred EEEE--ECCCCChHHHHHhH
Q psy15257 14 KCVV--VGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~--lG~~gvGKTsl~~~ 31 (65)
-+++ .|++|+|||+++..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHH
Confidence 4556 79999999999975
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.18 E-value=0.0092 Score=35.28 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
=+++.|++|+|||+++..
T Consensus 18 gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLA 35 (181)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999999975
No 479
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.18 E-value=0.012 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.6
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
...+.++|++|+|||+++..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~ 75 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEA 75 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 46788999999999999985
No 480
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.17 E-value=0.012 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.6
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+++.|+.|+|||+++..
T Consensus 41 ~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIA 57 (319)
T ss_dssp EEEESSSSSSHHHHHHH
T ss_pred EEEECcCCcCHHHHHHH
Confidence 89999999999999975
No 481
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.17 E-value=0.011 Score=40.55 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++.|++|+|||+++..
T Consensus 202 ~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp CEEEEESCTTTTTHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3589999999999999974
No 482
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.17 E-value=0.011 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.0
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
.+++|++|+|||+|+..
T Consensus 29 ~~i~G~nG~GKstll~a 45 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDA 45 (430)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999999975
No 483
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.16 E-value=0.015 Score=38.65 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=16.9
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||.++..
T Consensus 42 ~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp CEEEEECCSSSSHHHHHHH
T ss_pred CeeEeecCchHHHHHHHHH
Confidence 3689999999999999975
No 484
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.15 E-value=0.011 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+++.+
T Consensus 32 l~~i~G~pG~GKT~l~l~ 49 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 467889999999999886
No 485
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.15 E-value=0.012 Score=38.90 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-+++.|++|+|||+++..
T Consensus 51 gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARA 68 (476)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999999974
No 486
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.14 E-value=0.011 Score=37.73 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.7
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
-.+++|++|+|||+++..
T Consensus 28 ~~~i~G~nG~GKttll~a 45 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEA 45 (359)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCChhHHHHH
Confidence 467889999999999975
No 487
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.12 E-value=0.018 Score=39.68 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=20.2
Q ss_pred CceeeEEEEECCCCChHHHHHhH
Q psy15257 9 HQELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 9 ~~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
.....+++++|..++|||||+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~ 29 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTER 29 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHH
Confidence 34568999999999999999996
No 488
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.013 Score=38.54 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.4
Q ss_pred eeEEEEECCCCChHHHHHhH
Q psy15257 12 LVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 12 ~~kvv~lG~~gvGKTsl~~~ 31 (65)
..-+++.||+|+|||.++..
T Consensus 215 prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHH
Confidence 35689999999999999975
No 489
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.08 E-value=0.017 Score=42.46 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.8
Q ss_pred ceeeEEEEECCCCChHHHHHhH
Q psy15257 10 QELVKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 10 ~~~~kvv~lG~~gvGKTsl~~~ 31 (65)
...++++++|+.++|||||+.+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInr 315 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAA 315 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHH
Confidence 4568999999999999999986
No 490
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.07 E-value=0.0035 Score=39.77 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=15.8
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
..+++|++|+|||+|+..
T Consensus 62 ~~~lvG~NGaGKStLl~a 79 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDA 79 (415)
T ss_dssp EEEEEESHHHHHHHHTHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 578899999999999964
No 491
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.02 E-value=0.0089 Score=43.63 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
|+.++|++|+|||+|+.-
T Consensus 1107 ~vaIVG~SGsGKSTL~~l 1124 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVAL 1124 (1321)
T ss_dssp EEEEECSTTSSTTSHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 688999999999999973
No 492
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.014 Score=38.38 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=17.0
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
.-+++.||+|+|||.++..
T Consensus 216 rGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4689999999999999975
No 493
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.00 E-value=0.015 Score=39.81 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.7
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
-.++++|++|+|||+++..
T Consensus 208 ~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHH
Confidence 4679999999999999974
No 494
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.00 E-value=0.014 Score=36.60 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.4
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+.++|++|+|||+++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578889999999999975
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.00 E-value=0.013 Score=39.32 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=16.2
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.++++|++|+|||+++..
T Consensus 62 ~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 578999999999999974
No 496
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.92 E-value=0.015 Score=37.78 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.6
Q ss_pred eEEEEECCCCChHHHHHhH
Q psy15257 13 VKCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 13 ~kvv~lG~~gvGKTsl~~~ 31 (65)
..+++.|++|+|||+++..
T Consensus 64 ~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHH
Confidence 3589999999999999975
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.015 Score=39.62 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.3
Q ss_pred EEEECCCCChHHHHHhH
Q psy15257 15 CVVVGDTAVGKTRLICA 31 (65)
Q Consensus 15 vv~lG~~gvGKTsl~~~ 31 (65)
+.++|++|+|||+|+.-
T Consensus 381 v~iiG~NGsGKSTLlk~ 397 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKL 397 (608)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 68999999999999974
No 498
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.88 E-value=0.022 Score=41.64 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=16.0
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+.-
T Consensus 446 ~vaivG~sGsGKSTll~l 463 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISL 463 (1321)
T ss_dssp EEEEEECSSSCHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHH
Confidence 578999999999999973
No 499
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.88 E-value=0.021 Score=32.60 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=16.1
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
.+.+.|++|+|||++...
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999874
No 500
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.84 E-value=0.017 Score=38.44 Aligned_cols=18 Identities=44% Similarity=0.516 Sum_probs=16.3
Q ss_pred EEEEECCCCChHHHHHhH
Q psy15257 14 KCVVVGDTAVGKTRLICA 31 (65)
Q Consensus 14 kvv~lG~~gvGKTsl~~~ 31 (65)
++.++|++|+|||+|+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp EEEEECCSSSCHHHHHHH
T ss_pred EEEEECCCCCCccHHHHH
Confidence 688999999999999974
Done!