RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15257
(65 letters)
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 38.4 bits (88), Expect = 9e-06
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
P ++KCVVVGD AVGKT L+ N + T ++
Sbjct: 5 PGALMLKCVVVGDGAVGKTCLLM-SYANDAFPEEYVPTVFDHYAVSVTVG 53
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 35.0 bits (79), Expect = 2e-04
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 8 PHQELVKCVVVGDTAVGKTRLI 29
P E K VVVG VGK+ L
Sbjct: 2 PPSETHKLVVVGGGGVGKSALT 23
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 35.0 bits (79), Expect = 2e-04
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60
+KCVVVGD AVGKT L+ + NK S +VPTV+ +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPS------EYVPTVFDNYAVTVM 45
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 34.2 bits (77), Expect = 3e-04
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
L K +++GD VGK+ L+ R + T V + +
Sbjct: 6 LFKVILLGDGGVGKSSLMN-RYVTNKFDTQLFHTIGVEFLNKDLEV 50
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 33.8 bits (76), Expect = 4e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62
K V+VGD A GKT L+ + ++ +VPTV+ I D
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKDQFPE------VYVPTVFENYVADIEVD 46
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 33.7 bits (76), Expect = 4e-04
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAID 55
L K V++GD+ VGK+ L+ N+ S+ +I
Sbjct: 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 47
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 33.9 bits (76), Expect = 4e-04
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61
L+K +++GD+ VGKT L+ Q + + T+ A +
Sbjct: 2 LLKVIILGDSGVGKTSLM------NQYVNKKFSNQYKATIGADFLTKEVM 45
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 33.8 bits (76), Expect = 5e-04
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62
VK + G VGK+ L+ R K+ + PT+ + +++ D
Sbjct: 3 VKLAIFGRAGVGKSALV-VRFLTKRFI-----WEYDPTLESTYRHQATID 46
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 33.4 bits (75), Expect = 7e-04
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61
+KCVVVGD AVGKT L+ + N + + +
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN 54
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 32.9 bits (74), Expect = 8e-04
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
L+K + +GD+ VGKT + R + + + + T +
Sbjct: 5 LIKLLALGDSGVGKTTFLY-RYTDNKFNPKFITTVGIDFRE 44
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 32.7 bits (73), Expect = 0.001
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63
K ++VG GKT ++ + N+ V S + ++V + + + D
Sbjct: 17 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDI 66
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 32.9 bits (74), Expect = 0.001
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
L K V++G+ VGKT L+
Sbjct: 5 LFKIVLIGNAGVGKTCLV 22
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 32.7 bits (73), Expect = 0.001
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62
K VVVGD+ GKT L+ + +VPTV+ D
Sbjct: 3 CKIVVVGDSQCGKTALL------HVFAKDCFPENYVPTVFENYTASFEID 46
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 32.6 bits (73), Expect = 0.001
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63
K V +G+ +VGKT LI R + T + +
Sbjct: 2 KLVFLGEQSVGKTSLIT-RFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR 50
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 32.2 bits (72), Expect = 0.001
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
+ K +++GD VGK+ L+
Sbjct: 4 IFKYIIIGDMGVGKSCLL 21
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.4 bits (73), Expect = 0.002
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 12 LVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHV 48
++K +++GD+ VGK+ L+ R + + S + T +
Sbjct: 2 IMKILLIGDSGVGKSCLL-VRFVEDKFNPSFITTIGI 37
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.002
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
L K +++GDT VGK+ L+
Sbjct: 3 LFKYIIIGDTGVGKSCLL 20
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.2 bits (72), Expect = 0.002
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
K ++VGD+ VGKT L+
Sbjct: 6 AFKVMLVGDSGVGKTCLL 23
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 32.0 bits (71), Expect = 0.002
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
++K +++GD+ VGKT L+
Sbjct: 2 ILKVIILGDSGVGKTSLM 19
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.9 bits (71), Expect = 0.002
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 10 QELVKCVVVGDTAVGKTRLI 29
QE + VVVG VGK+ L
Sbjct: 3 QEKYRLVVVGGGGVGKSALT 22
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.8 bits (71), Expect = 0.002
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
K V++G+ VGKT L+
Sbjct: 3 SFKVVLLGEGCVGKTSLV 20
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 32.0 bits (71), Expect = 0.002
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ V++G+ VGK+ L A S T
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 48
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 31.8 bits (71), Expect = 0.002
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
L K ++VG VGK+ L
Sbjct: 4 LHKVIMVGSGGVGKSALT 21
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.9 bits (71), Expect = 0.002
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 13 VKCVVVGDTAVGKTRLI 29
+K V++G+ AVGK+ ++
Sbjct: 4 IKLVLLGEAAVGKSSIV 20
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 31.8 bits (71), Expect = 0.002
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 14 KCVVVGDTAVGKTRLI 29
K VV+G VGK+ L
Sbjct: 5 KVVVLGSGGVGKSALT 20
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 31.9 bits (71), Expect = 0.002
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 14 KCVVVGDTAVGKTRLI 29
K VVVG VGK+ L
Sbjct: 5 KLVVVGAGGVGKSALT 20
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 31.8 bits (71), Expect = 0.003
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
L K +++G++ VGK+ L+
Sbjct: 6 LFKLLLIGNSGVGKSCLL 23
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 31.5 bits (70), Expect = 0.003
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
+ K +V+GD+ VGKT L
Sbjct: 2 IFKIIVIGDSNVGKTCLT 19
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 31.4 bits (70), Expect = 0.003
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
+ K +++G+++VGKT +
Sbjct: 5 MFKILIIGNSSVGKTSFL 22
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 31.6 bits (70), Expect = 0.003
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 13 VKCVVVGDTAVGKTRLI 29
+K VVVG+ AVGK+ +I
Sbjct: 3 IKMVVVGNGAVGKSSMI 19
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 31.5 bits (70), Expect = 0.003
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 13 VKCVVVGDTAVGKTRLI 29
+K ++GDT VGK+ ++
Sbjct: 5 LKVCLLGDTGVGKSSIM 21
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 31.3 bits (70), Expect = 0.004
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
L K +++GD+ VGKT ++
Sbjct: 6 LFKLLLIGDSGVGKTCVL 23
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.2 bits (69), Expect = 0.004
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKD 62
K + +G GKT L+ N +++ T PT + +
Sbjct: 2 KLLFLGLDNAGKTTLL-HMLKNDRLA------TLQPTWHPTSEELAIGN 43
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 31.1 bits (69), Expect = 0.004
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 14 KCVVVGDTAVGKTRLI 29
K VV+G VGK+ L
Sbjct: 5 KLVVLGSGGVGKSALT 20
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 31.0 bits (69), Expect = 0.004
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
L K +V+G+ GK+ L+
Sbjct: 5 LFKFLVIGNAGTGKSCLL 22
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.1 bits (69), Expect = 0.004
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 14 KCVVVGDTAVGKTRLI 29
K V++G++AVGK+ L+
Sbjct: 8 KLVLLGESAVGKSSLV 23
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.1 bits (69), Expect = 0.004
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 13 VKCVVVGDTAVGKTRLI 29
++ V+GD GK+ LI
Sbjct: 6 LRLGVLGDARSGKSSLI 22
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 31.0 bits (69), Expect = 0.005
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAID 55
K +++G++ VGK+ L+ + V I
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS 50
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.8 bits (68), Expect = 0.005
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61
++ +++G GKT ++ + + V T PT+ + ++
Sbjct: 3 LRLLMLGLDNAGKTTIL-KKFNGEDVD------TISPTLGFNIKTLEHR 44
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 30.8 bits (68), Expect = 0.005
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 14 KCVVVGDTAVGKTRLI 29
K VVVGD VGK+ L
Sbjct: 6 KLVVVGDGGVGKSALT 21
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 30.9 bits (68), Expect = 0.006
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 13 VKCVVVGDTAVGKTRLI 29
K ++G +VGK+ L
Sbjct: 5 RKIAILGYRSVGKSSLT 21
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.7 bits (68), Expect = 0.006
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQY 57
+ V G VGK+ L+ R S + T I
Sbjct: 4 RVAVFGAGGVGKSSLV-LRFVKGTFRESYIPTVEDTYRQVISCD 46
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.0 bits (66), Expect = 0.009
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 14 KCVVVGDTAVGKTRLI 29
K V+VGD GKT +
Sbjct: 5 KLVLVGDGGTGKTTFV 20
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.1 bits (66), Expect = 0.010
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60
++ +++G GKT ++ R +V + +
Sbjct: 6 MRILILGLDGAGKTTIL-YRLQVGEVVTTIPTIGFNVETVTYKNLKFQ 52
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.7 bits (65), Expect = 0.013
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 14 KCVVVGDTAVGKTRLI 29
K +++G VGK+ L
Sbjct: 3 KVLLLGAPGVGKSALA 18
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 0.014
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIY 60
++ K V +G GKT L+ ++ L +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT 61
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 29.5 bits (65), Expect = 0.014
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63
++ +++G A GKT ++ + V+ + +V TV + D
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 63
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.5 bits (65), Expect = 0.015
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 7 QPHQELVKCVVVGDTAVGKTRLI 29
P QE V+ +++G GKT L+
Sbjct: 12 APDQE-VRILLLGLDNAGKTTLL 33
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 0.019
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 10 QELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
+E+ + +VG GKT + + Q + + T
Sbjct: 1 EEM-ELTLVGLQYSGKTTFV-NVIASGQFNEDMIPTVGFNMRK 41
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.1 bits (64), Expect = 0.021
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 12 LVKCVVVGDTAVGKTRLI 29
LVK +++G GK+ +
Sbjct: 2 LVKILLLGAGESGKSTFL 19
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.2 bits (64), Expect = 0.024
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
++ +++G GKT ++ + V+ + +V T+
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 57
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.9 bits (63), Expect = 0.025
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 14 KCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63
+ ++VG A GKT ++ + V+ + +V TV + D
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 51
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.8 bits (63), Expect = 0.027
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
VK +++G GK+ ++ KQ+ + T +
Sbjct: 3 VKLLLLGAGESGKSTIV------KQMKIIHEAGTGIVETH 36
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.6 bits (62), Expect = 0.036
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 13 VKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61
+K V+ G GK+ L+ A A + ++ + T +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 50
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.4 bits (62), Expect = 0.041
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 13 VKCVVVGDTAVGKTRLI 29
+K +++G GK+ I
Sbjct: 3 LKLLLLGTGESGKSTFI 19
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.4 bits (60), Expect = 0.097
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 7 QPHQELVKCVVVGDTAVGKTRLI 29
Q ++ + +++G GK+ ++
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIV 23
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.9 bits (55), Expect = 0.32
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 8 PHQELVKCVVVGDTAVGKTRLI 29
P ++ G + GK+ +
Sbjct: 12 PSDTGIEVAFAGRSNAGKSSAL 33
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.4 bits (54), Expect = 0.49
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 16 VVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDT 63
+ G + VGK+ LI R K+V + + + D
Sbjct: 4 IFAGRSNVGKSTLI-YRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDM 50
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.2 bits (54), Expect = 0.60
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 11 ELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTV 51
+L + VVG + GK+ ++ + + T P V
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 65
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 25.1 bits (53), Expect = 0.61
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 8 PHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVW 52
P L + + G + VGK+ I + K ++ + T+
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 24.8 bits (53), Expect = 0.74
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 2 LSDNEQPHQELVKCVVVGDTAVGKTRLICA 31
+ +L + VVVG + GK+ ++
Sbjct: 14 FNTLGSDPLDLPQIVVVGSQSSGKSSVLEN 43
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 24.6 bits (52), Expect = 0.95
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 11 ELVKCVVVGDTAVGKTRLI 29
+ +K +VG VGK+ L
Sbjct: 7 DAIKVAIVGRPNVGKSTLF 25
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 24.6 bits (52), Expect = 1.0
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 16 VVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTV 51
+ VG GKT L + +T
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIY 39
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 24.3 bits (51), Expect = 1.1
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 15 CVVVGDTAVGKTRLI 29
+V+G GK+ +I
Sbjct: 32 TLVLGLRRTGKSSII 46
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.3 bits (51), Expect = 1.3
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 16 VVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYK 61
+VG VGK+ L+ K +S T + I +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ 54
>d1jnpa_ b.63.1.1 (A:) p14-TCL1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 23.3 bits (50), Expect = 2.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 41 SQLLTTHVPTVWAIDQYRIYKDT 63
SQL+ +P +W + Y+
Sbjct: 56 SQLVPYELPLMWQLYPKDRYRSA 78
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 23.4 bits (49), Expect = 2.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 14 KCVVVGDTAVGKTRLI 29
+ V+VG VGK+ L+
Sbjct: 2 RMVIVGKPNVGKSTLL 17
>d1a1xa_ b.63.1.1 (A:) p13-MTCP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 106
Score = 22.9 bits (49), Expect = 2.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 41 SQLLTTHVPTVWAIDQYRIYKDT 63
S LLT+ +P +W + Y D
Sbjct: 57 SHLLTSQLPLMWQLYPEERYMDN 79
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 23.4 bits (49), Expect = 3.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 16 VVVGDTAVGKTRLICA 31
+VG GK+ + A
Sbjct: 30 AIVGANGSGKSNIGDA 45
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 23.2 bits (49), Expect = 3.3
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 1 MLSDNEQPHQELVKCVVVGDTAVGKTRLI 29
+L + +Q + +V+G VGK+ +
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTV 49
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 23.2 bits (49), Expect = 3.4
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 6 EQPHQELVKCVVVGDTAVGKTRLI 29
++ ++ V G+T GK+ I
Sbjct: 50 KEIDSSVLNVAVTGETGSGKSSFI 73
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 23.1 bits (48), Expect = 3.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 16 VVVGDTAVGKTRLI 29
++ G GKT L+
Sbjct: 7 IIAGPQNSGKTSLL 20
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 23.1 bits (48), Expect = 3.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 16 VVVGDTAVGKTRLICA 31
+VG GK+ +I A
Sbjct: 28 AIVGPNGSGKSNIIDA 43
>d1jsga_ b.63.1.1 (A:) p14-TCL1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 22.5 bits (48), Expect = 4.0
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 41 SQLLTTHVPTVWAIDQYRIYKDT 63
+Q+ + +P +W + Y+ +
Sbjct: 62 TQIGPSLLPIMWQLYPDGRYRSS 84
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus
thermophilus [TaxId: 274]}
Length = 74
Score = 22.0 bits (47), Expect = 4.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 14 KCVVVGDTAVGKTRLICARA 33
CV G + R++ A+A
Sbjct: 54 FCVRCGRPSAYGKRVVFAKA 73
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 22.9 bits (48), Expect = 4.5
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 16 VVVGDTAVGKTRLI---CARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDTLE 65
+V + GK+ LI +S TT P + + +
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD 58
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 22.4 bits (46), Expect = 6.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 16 VVVGDTAVGKTRLI 29
++VG VGK+ L
Sbjct: 4 LIVGRPNVGKSTLF 17
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 22.1 bits (45), Expect = 8.4
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 16 VVVGDTAVGKTRLICA 31
+++G GK+ L+ A
Sbjct: 27 LIIGQNGSGKSSLLDA 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.398
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 220,120
Number of extensions: 6910
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 78
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)