BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15258
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|F Chain F, The Crystal Structure Of Human Gins Core Complex
Length = 185
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF G+P +VPLWLAINLKQRQKCR
Sbjct: 1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59
Query: 61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
L+ P WM+ F MPS +YME++ ++L+ +D+IP D IRTL+KD
Sbjct: 60 LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
+WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ M L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 186 VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSS 245
D IRTL+KD+WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ M
Sbjct: 110 ADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYK 169
Query: 246 LK 247
L+
Sbjct: 170 LR 171
>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|E Chain E, The Crystal Structure Of Full Length Human Gins Complex
Length = 191
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF G+P +VPLWLAINLKQRQKCR
Sbjct: 7 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 65
Query: 61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
L+ P WM+ F MPS +YME++ ++L+ +D+IP D IRTL+KD
Sbjct: 66 LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 125
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
+WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ M L+
Sbjct: 126 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 177
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 186 VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSS 245
D IRTL+KD+WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ M
Sbjct: 116 ADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYK 175
Query: 246 LK 247
L+
Sbjct: 176 LR 177
>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex
pdb|2EHO|G Chain G, Crystal Structure Of Human Gins Complex
pdb|2EHO|K Chain K, Crystal Structure Of Human Gins Complex
Length = 186
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 1/171 (0%)
Query: 2 DPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRL 61
D AE+EF+AE + V IIP F+ L+ I+LI GD+GPF G+P +VPLWLAINLKQRQKCRL
Sbjct: 3 DAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRL 61
Query: 62 VLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
+ P W + F PS +Y E++ ++L+ +D+IP D IRTL+KD
Sbjct: 62 LPPEWXDVEKLEKXRDHERKEETFTPXPSPYYXELTKLLLNHASDNIPKADEIRTLVKDX 121
Query: 122 WDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ L+
Sbjct: 122 WDTRIAKLRVSADSFVRQQEAHAKLDNLTLXEINTSGTFLTQALNHXYKLR 172
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 186 VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSS 245
D IRTL+KD WD RI+KLR S D+FV+ HA L++LT EIN+ L L+
Sbjct: 111 ADEIRTLVKDXWDTRIAKLRVSADSFVRQQEAHAKLDNLTLXEINTSGTFLTQALNHXYK 170
Query: 246 LK 247
L+
Sbjct: 171 LR 172
>pdb|1NW8|A Chain A, Structure Of L72p Mutant Beta Class N6-Adenine Dna
Methyltransferase Rsri
Length = 319
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 132 SIDTFVKSGGGHATLNHLTQFEINSIRNI--LCDVLDTMSSLKD 173
+++ KSG H++ + L EI + R++ +CD LDT++ L D
Sbjct: 13 AMNALRKSGQKHSSESQLGSSEIGTTRHVYDVCDCLDTLAKLPD 56
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 207 SIDTFVKSGGGHATLNHLTQFEINSIRNI--LCDVLDTMSSLKD 248
+++ KSG H++ + L EI + R++ +CD LDT++ L D
Sbjct: 13 AMNALRKSGQKHSSESQLGSSEIGTTRHVYDVCDCLDTLAKLPD 56
>pdb|1EG2|A Chain A, Crystal Structure Of Rhodobacter Spheroides (N6 Adenosine)
Methyltransferase (M.Rsri)
pdb|1NW5|A Chain A, Structure Of The Beta Class N6-Adenine Dna
Methyltransferase Rsri Bound To S-Adenosylmethionine
pdb|1NW6|A Chain A, Structure Of The Beta Class N6-Adenine Dna
Methyltransferase Rsri Bound To Sinefungin
pdb|1NW7|A Chain A, Structure Of The Beta Class N6-adenine Dna
Methyltransferase Rsri Bound To
S-adenosyl-l-homocysteine
Length = 319
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 132 SIDTFVKSGGGHATLNHLTQFEINSIRNI--LCDVLDTMSSLKD 173
+++ KSG H++ + L EI + R++ +CD LDT++ L D
Sbjct: 13 AMNALRKSGQKHSSESQLGSSEIGTTRHVYDVCDCLDTLAKLPD 56
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 207 SIDTFVKSGGGHATLNHLTQFEINSIRNI--LCDVLDTMSSLKD 248
+++ KSG H++ + L EI + R++ +CD LDT++ L D
Sbjct: 13 AMNALRKSGQKHSSESQLGSSEIGTTRHVYDVCDCLDTLAKLPD 56
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 145 TLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKL 204
T ++ +FE + NI+CD + + R+LI + + +++K
Sbjct: 224 TTANIGRFEGGTQTNIVCDHVQIFAEA------------------RSLINEKXEAQVAKX 265
Query: 205 RSSIDTFVKSGGGHA 219
+ + +T K GGHA
Sbjct: 266 KEAFETTAKEXGGHA 280
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 5 EIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIP 42
E++ +AE+ NVE +P F L L+ VG + G+P
Sbjct: 67 ELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLP 104
>pdb|3PQS|A Chain A, The Crystal Structures Of Porcine Pathogen Aph87_tbpb
Length = 521
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 86 IKMPSDHYMEMSHI--ILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSG 140
+ +PS E+S I + D +PN D +RT+ + + ++K S+ FV+SG
Sbjct: 50 VNIPSVRKTEISEIDTVTDESLSLVPNEDKLRTIANENYGSVVTKSGSNTMNFVRSG 106
>pdb|3MGX|A Chain A, Crystal Structure Of P450 Oxyd That Is Involved In The
Biosynthesis Of Vancomycin-Type Antibiotics
pdb|3MGX|B Chain B, Crystal Structure Of P450 Oxyd That Is Involved In The
Biosynthesis Of Vancomycin-Type Antibiotics
Length = 415
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 109 PNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
P DL+ TL+ D DL I + + D + G N T+ I + L V +
Sbjct: 225 PGDDLVSTLVTDD-DLTIDDVLLNCDNVLIGG------NETTRHAITGAVHALATVPGLL 277
Query: 169 SSLKDKQCDVDVTLQ 183
++L+D DVD ++
Sbjct: 278 TALRDGSADVDTVVE 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,995,191
Number of Sequences: 62578
Number of extensions: 258853
Number of successful extensions: 523
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 17
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)