Query psy15258
Match_columns 265
No_of_seqs 163 out of 274
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 16:24:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e9x_B DNA replication complex 100.0 3E-65 1E-69 445.1 18.4 175 1-177 1-176 (185)
2 2e9x_B DNA replication complex 99.8 3.5E-19 1.2E-23 154.9 8.6 72 176-250 103-174 (185)
3 2e9x_C GINS complex subunit 3; 98.8 1.5E-07 5E-12 83.5 14.2 149 7-163 27-185 (219)
4 3anw_B GINS23, putative unchar 98.3 2.1E-06 7.1E-11 73.8 9.1 122 33-158 22-158 (171)
5 3anw_A GINS51, putative unchar 95.0 0.02 6.9E-07 49.2 4.4 86 67-160 1-101 (188)
6 3anw_A GINS51, putative unchar 52.7 5.7 0.0002 33.7 1.9 42 20-62 142-184 (188)
7 3iz6_S 40S ribosomal protein S 47.3 14 0.00048 30.6 3.3 40 49-100 21-64 (146)
8 2l9a_X LAK160-P12; cationic, p 38.1 12 0.0004 22.0 1.0 13 45-57 11-23 (26)
9 2xzm_T RPS19E; ribosome, trans 35.6 12 0.00041 31.3 1.1 40 49-100 22-65 (155)
10 3sjd_D Golgi to ER traffic pro 28.3 31 0.001 23.2 2.0 12 121-132 23-34 (46)
11 3twe_A Alpha4H; unknown functi 23.6 93 0.0032 18.3 3.2 23 110-133 2-24 (27)
12 3zs9_C Golgi to ER traffic pro 22.4 32 0.0011 22.3 1.1 12 121-132 13-24 (38)
13 2v7f_A RPS19, RPS19E SSU ribos 21.5 33 0.0011 28.0 1.4 20 48-69 15-34 (150)
14 3lbx_B Beta-I spectrin, spectr 20.4 3.3E+02 0.011 21.6 7.8 42 184-233 140-181 (185)
No 1
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=100.00 E-value=3e-65 Score=445.07 Aligned_cols=175 Identities=50% Similarity=0.895 Sum_probs=169.4
Q ss_pred CChhhhhhhhcCceeEEeeCCccccccccccccccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhh
Q psy15258 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK 80 (265)
Q Consensus 1 m~p~E~eFlAe~e~I~IvP~f~~~~~l~lI~g~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~ 80 (265)
|||+|++|+||+++|+|+|+|++ ++++||+|+||||+||.|++||||||++||++++|+|+||+||++++|++++++|+
T Consensus 1 ~~p~EieFlae~e~I~IvP~f~~-~~~~lI~g~~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~ 79 (185)
T 2e9x_B 1 MDAAEVEFLAEKELVTIIPNFSL-DKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHER 79 (185)
T ss_dssp CCHHHHHHHHTTSEEEEEESSCB-CCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCeEEEEeCCCC-CceeeeecccCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHh
Confidence 89999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCc-cHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHHHHhhHH
Q psy15258 81 KSRFFIKMPSD-HYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRN 159 (265)
Q Consensus 81 ~~~~Fs~LP~~-hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mEin~iR~ 159 (265)
+++.|++|| + ||+|||++||++|+||++++++||+||+|||++|++|+|+|++.+.+.++++++++|+|+||+|++|+
T Consensus 80 ~~~~f~~lP-~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~ 158 (185)
T 2e9x_B 80 KEETFTPMP-SPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGT 158 (185)
T ss_dssp HCSSCCCCS-STTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHH
T ss_pred cccccccCC-HHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHH
Confidence 988999999 6 79999999999999999999999999999999999999999999987778899999999999999999
Q ss_pred hHHHHHHHHhhhhccccc
Q psy15258 160 ILCDVLDTMSSLKDKQCD 177 (265)
Q Consensus 160 f~~~amd~l~~l~~~~~~ 177 (265)
|++++||++++++++...
T Consensus 159 f~~~~~~~l~~l~~~~~~ 176 (185)
T 2e9x_B 159 FLTQALNHMYKLRTNLQP 176 (185)
T ss_dssp HHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999999999877644
No 2
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=99.78 E-value=3.5e-19 Score=154.89 Aligned_cols=72 Identities=42% Similarity=0.675 Sum_probs=68.0
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccCCcchHHHHhhhhhHHHHHHHHhhhhccc
Q psy15258 176 CDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ 250 (265)
Q Consensus 176 ~~~d~~~~~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~~ldnlt~mEin~irpf~~~~m~~l~~~~~~~ 250 (265)
+.+|++ ++++||++|+||||+|++|+|+|+++|.+++++|++|||||+||||++|||++++||+++++++..
T Consensus 103 a~dDi~---~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~f~~~~~~~l~~l~~~~ 174 (185)
T 2e9x_B 103 ASDNIP---KADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNL 174 (185)
T ss_dssp HGGGST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 357888 999999999999999999999999999887889999999999999999999999999999998765
No 3
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=98.76 E-value=1.5e-07 Score=83.53 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=108.4
Q ss_pred hhhhcCceeEEeeCCccccccc--cccc---cc-cC-CCCCCccchhHHHHHHh--cccCcceeeCCCCCCHHHHHHHHH
Q psy15258 7 EFIAEDQNVEIIPKFNHLNLIH--LISG---DV-GP-FRAGIPAKVPLWLAINL--KQRQKCRLVLPTWMNLETLTEIKE 77 (265)
Q Consensus 7 eFlAe~e~I~IvP~f~~~~~l~--lI~g---~~-GP-F~p~~p~~VPLWlAi~L--Kk~~kC~IvpP~WL~ve~L~~~l~ 77 (265)
.+||++|.|..+++... ..+- ++.| .- .. ..+|.++.+|||||..| .+++.|.|.+|+-++....+ .++
T Consensus 27 dILa~~ekVpC~f~~~~-~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~P~~y~~~~~~-~L~ 104 (219)
T 2e9x_C 27 DILMSHEKLPVRTETAM-PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRT-VFS 104 (219)
T ss_dssp HHHHTTSEEEEEESSCB-TTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECCCGGGSHHHHH-HHH
T ss_pred HHHhcCCeeeeEEeecC-CCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeCchhhhHHHHH-HHh
Confidence 47999999999999999 7776 5555 44 34 89999999999999999 99999999999999977654 455
Q ss_pred HhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCc-ceecCCchHHHHHh
Q psy15258 78 EEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINS 156 (265)
Q Consensus 78 ~E~~~~~Fs~LP~~hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~-~l~l~NLt~mEin~ 156 (265)
.+-..-.+..+. +||++.+..|+.. +.. +..++...+.+....|..+|-...... .++. .--+.+|+.+|-.-
T Consensus 105 Adp~~VdL~~~~-p~fY~lG~~L~~l--~~~-ed~~L~~~L~~tf~~R~~~I~d~a~~~--~~~~~~~~~~~Ld~~Er~L 178 (219)
T 2e9x_C 105 ADPNVVDLHKMG-PHFYGFGSQLLHF--DSP-ENADISQSLLQTFIGRFRRIMDSSQNA--YNEDTSALVARLDEMERGL 178 (219)
T ss_dssp HCGGGSCTTTSC-SSHHHHHHHGGGG--CCT-THHHHHHHHHHHHHHHHHHHHHHHTTS--SCCCCHHHHTTCCHHHHHH
T ss_pred cCCcEEecccCC-chHHHHHHHHHhc--ccc-chHHHHHHHHHHHHHHHHHHHHHhccc--ccccHHHHHhcCCHHHHHH
Confidence 555666778887 7999999999876 122 234666667777777888877654321 1111 11479999999888
Q ss_pred hHHhHHH
Q psy15258 157 IRNILCD 163 (265)
Q Consensus 157 iR~f~~~ 163 (265)
.+..--+
T Consensus 179 f~~g~~~ 185 (219)
T 2e9x_C 179 FQTGQKG 185 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755433
No 4
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=98.32 E-value=2.1e-06 Score=73.76 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=85.8
Q ss_pred cccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHh--------cC
Q psy15258 33 DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILD--------IG 104 (265)
Q Consensus 33 ~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~~~Fs~LP~~hy~EiA~lLL~--------~a 104 (265)
+||+.+.|..+.||.|+|..|...+-|.|.--.=-.++.|.+++-+|+++..+.+||. .|..=++..+. ..
T Consensus 22 ~f~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I~eL~~il~eEr~~~~L~~LP~-dFY~rvr~yI~~Le~ei~~~~ 100 (171)
T 3anw_B 22 PFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGEIDKVIAEERESEPLTLLPE-GLYERAEFYAYYLENYVRLNP 100 (171)
T ss_dssp CCTTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHHHHHHHHHHHHTTSSSCCCCCT-THHHHHHHHHHHHHHHTTCCC
T ss_pred hhhhcCCCCeeeccHHHHHHHHHCCCEeeccccchHHHHHHHHHHHhhccCccccCCH-HHHHHHHHHHHHHHHHHHhcc
Confidence 4899999999999999999999999999964124558899999999999999999995 44455554443 11
Q ss_pred CCCCCC-------hHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHHHHhhH
Q psy15258 105 ADDIPN-------VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIR 158 (265)
Q Consensus 105 ~dDi~~-------~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mEin~iR 158 (265)
..|+.. ...++..+++|.+.|..||-+.+. ...+ +.--+++||.-|-.-..
T Consensus 101 ~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la~--~~~~-~~eil~rLTpEEk~iy~ 158 (171)
T 3anw_B 101 RESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAVM--LRPN-SLELLSRLAPEERRIYL 158 (171)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--C--C-CHHHHTTSCHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCC-cHHHHhcCCHHHHHHHH
Confidence 224332 355666778888899999887551 1122 22237999998865443
No 5
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=95.01 E-value=0.02 Score=49.20 Aligned_cols=86 Identities=23% Similarity=0.355 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHh---c---CCC-CC--C------ChHHHHHHHHHHHHHHHHHHHH
Q psy15258 67 MNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILD---I---GAD-DI--P------NVDLIRTLIKDIWDLRISKLRS 131 (265)
Q Consensus 67 L~ve~L~~~l~~E~~~~~Fs~LP~~hy~EiA~lLL~---~---a~d-Di--~------~~~~ir~Li~DI~evR~~Klr~ 131 (265)
|+++.|.+++..|+++..++++|..+|-++...+-. . +.| .. . ....++.+++.|.++|..|+-.
T Consensus 1 mdi~eL~~il~~Er~s~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~ 80 (188)
T 3anw_A 1 MDIVKLRELLEAELSSTDLNELDEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIVD 80 (188)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999996677777665432 1 112 11 1 1234788899999999999987
Q ss_pred hHHHHHhcCCcceecCCchHHHHHhhHHh
Q psy15258 132 SIDTFVKSGGGHATLNHLTQFEINSIRNI 160 (265)
Q Consensus 132 gl~~~~~~~~~~l~l~NLt~mEin~iR~f 160 (265)
.. + .+ ..+|+|.-|-.-....
T Consensus 81 ~a--~--~~----~~~~Lt~EEk~l~~~l 101 (188)
T 3anw_A 81 LA--V--EG----KIAEMTAEEKRLFNVI 101 (188)
T ss_dssp HH--H--HT----EECCCCHHHHHHHHHH
T ss_pred HH--h--hh----hhhhCCHHHHHHHHHH
Confidence 65 1 12 4699999997665433
No 6
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=52.73 E-value=5.7 Score=33.72 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=32.8
Q ss_pred CCccccccccccc-cccCCCCCCccchhHHHHHHhcccCcceee
Q psy15258 20 KFNHLNLIHLISG-DVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62 (265)
Q Consensus 20 ~f~~~~~l~lI~g-~~GPF~p~~p~~VPLWlAi~LKk~~kC~Iv 62 (265)
.-.. +.+.=..| .||||++|--+.+|-=.|-.|.+++.+.-+
T Consensus 142 ~~d~-p~i~~~d~r~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~i 184 (188)
T 3anw_A 142 QIDL-PAVLGPDMKEYGPFMAGDMAIIPTVIGRALVEREAARRV 184 (188)
T ss_dssp CSCB-CCEECTTSCEECCBCTTCEEEEEHHHHHHHHTTTSEEEC
T ss_pred EeCC-CceecCCcCcccCCCcccEEeecHHHHHHHHhCCCeEEe
Confidence 4444 44433333 699999999999999999999999988754
No 7
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.25 E-value=14 Score=30.62 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=27.4
Q ss_pred HHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCC----ccHHHHHHHH
Q psy15258 49 LAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPS----DHYMEMSHII 100 (265)
Q Consensus 49 lAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~~~Fs~LP~----~hy~EiA~lL 100 (265)
+|-+||+.+ +|.+|+|.++- .+..+-++|+ |+|.-.|.++
T Consensus 21 ~A~~LK~~g--ki~~P~W~d~v----------KTg~~KEl~P~d~DW~Y~RaASi~ 64 (146)
T 3iz6_S 21 YSAHLKRSG--KMELPEWVDIV----------KTARFKELPPYDPDWYYTRAASIA 64 (146)
T ss_dssp HHTTGGGSS--CCCCTTTGGGC----------CSSSSCSSSTHHHHTHHHHHHHHH
T ss_pred HHHHHHHcC--CCCCCchHHHh----------hccccccCCCCCCchHHHHHHHHH
Confidence 688899775 58999996542 3567777775 5666555543
No 8
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=38.13 E-value=12 Score=21.96 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=10.5
Q ss_pred hhHHHHHHhcccC
Q psy15258 45 VPLWLAINLKQRQ 57 (265)
Q Consensus 45 VPLWlAi~LKk~~ 57 (265)
-|||-|+.||-++
T Consensus 11 aplwkalalklkk 23 (26)
T 2l9a_X 11 APLWKALALKLKK 23 (26)
T ss_dssp CTHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHh
Confidence 5999999888654
No 9
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=35.56 E-value=12 Score=31.34 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCC----ccHHHHHHHH
Q psy15258 49 LAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPS----DHYMEMSHII 100 (265)
Q Consensus 49 lAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~~~Fs~LP~----~hy~EiA~lL 100 (265)
+|-+||+.+ +|.+|+|.++- .+..+-++|+ |+|.-.|.++
T Consensus 22 ~A~~LKk~g--ki~~P~W~d~v----------KTg~~KElaP~d~DW~YiRaASi~ 65 (155)
T 2xzm_T 22 YASHLKKAN--KLSIPEFTQWT----------TTSVARELAPQDSDWVYIRTAALA 65 (155)
T ss_dssp HHHHTTSSC--CSCCCHHHHSC----------CCSSSCSSCCSSTTHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCCchHhhh----------hccccccCCCCCCchHHHHHHHHH
Confidence 688999665 59999994321 2345555553 5666555544
No 10
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=28.31 E-value=31 Score=23.20 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHh
Q psy15258 121 IWDLRISKLRSS 132 (265)
Q Consensus 121 I~evR~~Klr~g 132 (265)
++|.|++|+++|
T Consensus 23 rRERR~aKi~~G 34 (46)
T 3sjd_D 23 LRERRQKKFSNG 34 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 589999999987
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.60 E-value=93 Score=18.26 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhH
Q psy15258 110 NVDLIRTLIKDIWDLRISKLRSSI 133 (265)
Q Consensus 110 ~~~~ir~Li~DI~evR~~Klr~gl 133 (265)
+++++-.-++|+.+ |..|+|+.+
T Consensus 2 nadelykeledlqe-rlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQE-RLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHh
Confidence 45677777888765 667777654
No 12
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=22.45 E-value=32 Score=22.31 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q psy15258 121 IWDLRISKLRSS 132 (265)
Q Consensus 121 I~evR~~Klr~g 132 (265)
++|.|++|++.|
T Consensus 13 rRERR~aKi~~G 24 (38)
T 3zs9_C 13 LRERRQKKFSNG 24 (38)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcc
Confidence 578999999987
No 13
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=21.55 E-value=33 Score=28.04 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.0
Q ss_pred HHHHHhcccCcceeeCCCCCCH
Q psy15258 48 WLAINLKQRQKCRLVLPTWMNL 69 (265)
Q Consensus 48 WlAi~LKk~~kC~IvpP~WL~v 69 (265)
=+|.+||+.++ |.+|+|.++
T Consensus 15 ~~a~~lk~~~k--i~~P~w~~~ 34 (150)
T 2v7f_A 15 RVAQRLKEIPE--IKPPEWAPF 34 (150)
T ss_dssp HHHHHHTTCTT--CCCCSCGGG
T ss_pred HHHHHHHhcCC--CCCcchhhh
Confidence 47889997765 788999776
No 14
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=20.39 E-value=3.3e+02 Score=21.63 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=29.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccCCcchHHHHhhh
Q psy15258 184 LNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIR 233 (265)
Q Consensus 184 ~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~~ldnlt~mEin~ir 233 (265)
.+.+.+..+++.-- .+.+.+.+. .+.-..|..+|.||.++++
T Consensus 140 ~sl~~ve~LlkkH~-----~fe~~l~~~---~e~i~~L~~~t~~e~~~~~ 181 (185)
T 3lbx_B 140 HTVDSVEKLIKRHE-----AFEKSTASW---AERFAALEKPTTLELKERQ 181 (185)
T ss_dssp SSHHHHHHHHHHHH-----HHHHHHHHT---HHHHHHHHSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHh---HHHHHHHhhhHHHHHHHHH
Confidence 36889999988654 345555552 4444589999999998864
Done!