RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15258
         (265 letters)



>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein
           PSF2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score =  129 bits (326), Expect = 8e-39
 Identities = 48/110 (43%), Positives = 73/110 (66%)

Query: 64  PTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWD 123
           P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD+WD
Sbjct: 2   PEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWD 61

Query: 124 LRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKD 173
            RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+ 
Sbjct: 62  TRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRT 111



 Score = 72.9 bits (179), Expect = 4e-17
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 185 NVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMS 244
             D IRTL+KD+WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M 
Sbjct: 48  KADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMY 107

Query: 245 SLKD 248
            L+ 
Sbjct: 108 KLRT 111


>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein
          PSF2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 99.4 bits (248), Expect = 9e-28
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 1  MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
          MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1  MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61 LV 62
          L+
Sbjct: 60 LL 61


>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 511

 Score = 26.2 bits (57), Expect = 4.3
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 161 LCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHAT 220
           + D +DT+  + +         +  +      I D+ D  I    +  +T ++  GG  +
Sbjct: 51  IVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLS 110

Query: 221 LNHLT 225
             HL+
Sbjct: 111 AYHLS 115


>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 389

 Score = 26.0 bits (56), Expect = 4.8
 Identities = 10/82 (12%), Positives = 17/82 (20%), Gaps = 8/82 (9%)

Query: 38  RAGIPAKVPLWLA------INLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSD 91
           + GI     +  A      +        +     W   +      ++  K          
Sbjct: 68  KYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVS 127

Query: 92  H--YMEMSHIILDIGADDIPNV 111
              Y   S   L I       V
Sbjct: 128 LEPYRRESRKALKIFKSACDLV 149


>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 24.4 bits (53), Expect = 6.2
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 31 SGDVGPFRAGIPAKVPLWLAINLKQRQK 58
          +        G   ++PLWLA  L   ++
Sbjct: 54 AETDNAVPQGSKLELPLWLAKGLFDNKR 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 976,149
Number of extensions: 44283
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 9
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)