Query psy15259
Match_columns 257
No_of_seqs 243 out of 1672
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:25:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3770|consensus 100.0 1.4E-59 2.9E-64 446.0 22.9 252 2-257 77-330 (577)
2 cd00842 MPP_ASMase acid sphing 100.0 1.9E-44 4E-49 325.5 20.2 180 69-257 1-184 (296)
3 cd07395 MPP_CSTP1 Homo sapiens 99.5 2E-13 4.3E-18 121.1 15.2 134 65-254 3-137 (262)
4 cd07402 MPP_GpdQ Enterobacter 99.5 1.2E-12 2.5E-17 114.1 13.7 98 119-253 21-119 (240)
5 PRK11148 cyclic 3',5'-adenosin 99.4 2.1E-12 4.5E-17 115.7 14.5 87 62-189 10-97 (275)
6 cd07396 MPP_Nbla03831 Homo sap 99.3 2.2E-11 4.8E-16 108.7 11.2 98 121-252 25-122 (267)
7 cd07401 MPP_TMEM62_N Homo sapi 99.2 1.3E-10 2.9E-15 103.3 11.3 64 126-190 23-89 (256)
8 cd07383 MPP_Dcr2 Saccharomyces 99.1 4.9E-10 1.1E-14 95.6 11.4 106 66-216 2-107 (199)
9 COG1409 Icc Predicted phosphoh 99.1 4.7E-10 1E-14 99.5 11.2 62 122-192 19-80 (301)
10 cd00840 MPP_Mre11_N Mre11 nucl 99.1 2.8E-10 6.1E-15 97.5 9.1 65 120-191 25-90 (223)
11 PRK11340 phosphodiesterase Yae 99.0 9.5E-10 2.1E-14 98.6 9.8 78 65-190 48-125 (271)
12 TIGR00619 sbcd exonuclease Sbc 99.0 7.7E-10 1.7E-14 98.3 8.8 63 123-190 26-88 (253)
13 cd00839 MPP_PAPs purple acid p 99.0 1.7E-09 3.7E-14 97.1 10.3 106 128-254 23-129 (294)
14 PF00149 Metallophos: Calcineu 99.0 1.6E-09 3.4E-14 85.7 9.0 51 135-191 29-79 (200)
15 cd07399 MPP_YvnB Bacillus subt 99.0 3.6E-09 7.8E-14 91.6 10.4 83 123-215 18-103 (214)
16 COG0420 SbcD DNA repair exonuc 99.0 1.8E-09 3.9E-14 101.4 8.8 87 67-191 1-89 (390)
17 cd07385 MPP_YkuE_C Bacillus su 99.0 2.5E-09 5.3E-14 92.1 8.5 58 123-190 19-76 (223)
18 PHA02546 47 endonuclease subun 99.0 3.1E-09 6.7E-14 98.3 9.4 64 122-190 25-89 (340)
19 TIGR00583 mre11 DNA repair pro 98.9 5.3E-09 1.1E-13 98.8 10.2 88 65-190 2-123 (405)
20 cd07400 MPP_YydB Bacillus subt 98.9 3.8E-09 8.2E-14 85.0 7.4 57 125-189 24-80 (144)
21 PRK10966 exonuclease subunit S 98.9 5.5E-09 1.2E-13 98.9 9.3 62 123-190 26-87 (407)
22 TIGR03729 acc_ester putative p 98.9 1.1E-08 2.5E-13 89.7 9.2 57 122-190 18-74 (239)
23 cd07378 MPP_ACP5 Homo sapiens 98.9 1.2E-08 2.5E-13 91.0 9.2 108 123-254 19-132 (277)
24 KOG1432|consensus 98.8 3.2E-08 6.9E-13 90.1 9.3 98 62-189 49-146 (379)
25 PRK05340 UDP-2,3-diacylglucosa 98.7 3.6E-08 7.8E-13 86.7 8.3 61 127-190 21-83 (241)
26 PF12850 Metallophos_2: Calcin 98.7 3.2E-08 6.8E-13 80.0 6.9 45 124-189 15-59 (156)
27 cd07393 MPP_DR1119 Deinococcus 98.6 1.4E-07 3E-12 82.6 9.3 83 69-190 1-84 (232)
28 cd08163 MPP_Cdc1 Saccharomyces 98.6 3.5E-07 7.5E-12 81.6 9.7 63 126-189 34-96 (257)
29 TIGR01854 lipid_A_lpxH UDP-2,3 98.5 2.7E-07 5.8E-12 80.7 8.0 64 125-190 17-81 (231)
30 PLN02533 probable purple acid 98.5 8.5E-07 1.8E-11 84.6 11.6 105 127-253 156-260 (427)
31 COG1408 Predicted phosphohydro 98.4 9E-07 2E-11 80.0 8.5 80 62-192 40-120 (284)
32 cd07386 MPP_DNA_pol_II_small_a 98.4 1.1E-06 2.3E-11 77.4 8.6 67 124-190 18-94 (243)
33 PRK09453 phosphodiesterase; Pr 98.4 8.2E-07 1.8E-11 74.7 7.5 61 125-190 16-76 (182)
34 TIGR03767 P_acnes_RR metalloph 98.4 1.7E-06 3.8E-11 82.8 10.0 22 177-198 183-204 (496)
35 cd08165 MPP_MPPE1 human MPPE1 98.4 1.5E-06 3.2E-11 71.8 8.2 50 136-190 37-89 (156)
36 cd07388 MPP_Tt1561 Thermus the 98.4 1.8E-06 4E-11 75.5 8.6 57 123-189 18-74 (224)
37 cd07392 MPP_PAE1087 Pyrobaculu 98.4 8.7E-07 1.9E-11 73.7 6.3 43 136-189 22-64 (188)
38 cd07391 MPP_PF1019 Pyrococcus 98.3 6.3E-07 1.4E-11 74.8 5.3 62 123-191 28-89 (172)
39 cd07384 MPP_Cdc1_like Saccharo 98.3 2.3E-06 4.9E-11 71.7 7.7 56 135-191 43-101 (171)
40 TIGR00040 yfcE phosphoesterase 98.3 2.3E-06 5E-11 70.2 7.3 46 128-190 19-64 (158)
41 PRK04036 DNA polymerase II sma 98.3 4.8E-06 1E-10 81.0 10.6 92 62-191 239-344 (504)
42 cd07397 MPP_DevT Myxococcus xa 98.2 2.7E-06 5.8E-11 75.0 6.8 44 131-190 20-63 (238)
43 cd07404 MPP_MS158 Microscilla 98.2 1.3E-06 2.8E-11 72.1 4.0 45 135-190 24-68 (166)
44 PHA02239 putative protein phos 98.1 1.1E-05 2.5E-10 71.0 8.0 59 123-190 14-73 (235)
45 cd08166 MPP_Cdc1_like_1 unchar 98.1 1.3E-05 2.9E-10 68.6 7.7 66 122-190 28-93 (195)
46 TIGR00024 SbcD_rel_arch putati 98.0 1.2E-05 2.6E-10 70.4 7.0 62 121-191 39-103 (225)
47 cd07379 MPP_239FB Homo sapiens 98.0 1.2E-05 2.6E-10 64.2 6.2 46 136-190 18-63 (135)
48 cd00841 MPP_YfcE Escherichia c 98.0 1.9E-05 4.1E-10 64.2 6.5 47 124-191 14-60 (155)
49 cd07398 MPP_YbbF-LpxH Escheric 97.9 1.4E-05 2.9E-10 68.4 5.5 53 136-191 29-83 (217)
50 cd00838 MPP_superfamily metall 97.9 3.2E-05 6.9E-10 59.2 6.6 47 135-189 24-70 (131)
51 cd07390 MPP_AQ1575 Aquifex aeo 97.8 7.8E-05 1.7E-09 62.0 8.1 57 122-191 26-83 (168)
52 COG2908 Uncharacterized protei 97.7 5.6E-05 1.2E-09 66.2 6.0 71 123-196 14-86 (237)
53 cd07406 MPP_CG11883_N Drosophi 97.7 9.9E-05 2.1E-09 65.6 7.5 58 123-189 24-82 (257)
54 PRK00166 apaH diadenosine tetr 97.7 9.8E-05 2.1E-09 66.6 7.1 56 123-190 14-69 (275)
55 cd07424 MPP_PrpA_PrpB PrpA and 97.6 0.00013 2.7E-09 62.7 6.5 55 123-191 14-68 (207)
56 cd07425 MPP_Shelphs Shewanella 97.6 0.00016 3.5E-09 62.4 6.9 64 123-192 11-82 (208)
57 cd00845 MPP_UshA_N_like Escher 97.6 0.00016 3.5E-09 63.5 6.8 59 122-189 22-81 (252)
58 KOG3662|consensus 97.6 0.00043 9.3E-09 65.2 9.6 98 62-190 44-144 (410)
59 cd07423 MPP_PrpE Bacillus subt 97.5 0.00024 5.1E-09 62.3 6.6 58 123-190 14-80 (234)
60 cd07394 MPP_Vps29 Homo sapiens 97.5 0.00043 9.3E-09 58.3 7.5 45 128-190 21-65 (178)
61 TIGR03768 RPA4764 metallophosp 97.4 0.00041 8.8E-09 66.4 7.5 69 123-199 82-179 (492)
62 PF14582 Metallophos_3: Metall 97.4 0.00028 6E-09 61.6 5.7 64 123-189 19-101 (255)
63 PRK11439 pphA serine/threonine 97.4 0.00033 7.2E-09 60.8 6.0 54 123-190 30-83 (218)
64 PTZ00422 glideosome-associated 97.4 0.00035 7.6E-09 65.8 6.4 68 122-190 42-109 (394)
65 cd07410 MPP_CpdB_N Escherichia 97.4 0.00061 1.3E-08 61.0 7.7 64 122-189 29-94 (277)
66 COG2129 Predicted phosphoester 97.4 0.00059 1.3E-08 59.4 7.2 57 124-189 18-76 (226)
67 cd07422 MPP_ApaH Escherichia c 97.4 0.00047 1E-08 61.6 6.5 56 123-190 12-67 (257)
68 PRK13625 bis(5'-nucleosyl)-tet 97.3 0.00051 1.1E-08 60.7 6.5 58 123-190 14-79 (245)
69 KOG2310|consensus 97.3 0.0014 3E-08 63.4 9.4 88 64-189 11-132 (646)
70 PRK09968 serine/threonine-spec 97.3 0.00065 1.4E-08 59.1 6.3 53 123-189 28-80 (218)
71 COG0622 Predicted phosphoester 97.2 0.0013 2.8E-08 55.3 6.8 41 135-191 26-66 (172)
72 cd08164 MPP_Ted1 Saccharomyces 97.1 0.0013 2.7E-08 56.4 6.7 66 124-191 31-112 (193)
73 cd07421 MPP_Rhilphs Rhilph pho 97.1 0.0016 3.6E-08 59.2 7.6 62 123-191 15-81 (304)
74 COG1311 HYS2 Archaeal DNA poly 97.1 0.0015 3.2E-08 62.5 7.3 92 62-191 221-322 (481)
75 cd07408 MPP_SA0022_N Staphyloc 97.1 0.0016 3.4E-08 57.8 6.9 58 123-189 24-81 (257)
76 KOG1378|consensus 97.0 0.0029 6.3E-08 60.3 8.3 120 107-254 148-268 (452)
77 TIGR00668 apaH bis(5'-nucleosy 97.0 0.0023 5E-08 57.8 6.9 57 123-191 14-70 (279)
78 cd07411 MPP_SoxB_N Thermus the 96.9 0.0033 7.2E-08 56.0 7.7 58 123-189 36-94 (264)
79 cd07389 MPP_PhoD Bacillus subt 96.9 0.0094 2E-07 51.4 10.1 117 136-252 28-167 (228)
80 cd00144 MPP_PPP_family phospho 96.9 0.0021 4.6E-08 55.2 5.7 61 123-193 11-71 (225)
81 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.014 2.9E-07 52.4 9.6 102 123-251 12-124 (262)
82 cd07407 MPP_YHR202W_N Saccharo 96.6 0.0037 8E-08 56.5 5.6 47 137-189 49-96 (282)
83 cd07413 MPP_PA3087 Pseudomonas 96.5 0.0069 1.5E-07 52.7 6.3 58 123-190 12-76 (222)
84 COG4186 Predicted phosphoester 96.3 0.024 5.2E-07 46.9 8.2 52 127-190 34-86 (186)
85 COG1407 Predicted ICC-like pho 96.3 0.0094 2E-07 52.4 6.0 63 123-191 49-111 (235)
86 cd07412 MPP_YhcR_N Bacillus su 96.2 0.018 3.9E-07 52.1 7.6 61 122-189 27-87 (288)
87 PF04042 DNA_pol_E_B: DNA poly 96.2 0.0053 1.2E-07 52.4 3.8 78 122-199 16-100 (209)
88 cd07403 MPP_TTHA0053 Thermus t 96.0 0.014 3.1E-07 46.3 5.1 38 135-189 20-57 (129)
89 COG0737 UshA 5'-nucleotidase/2 95.9 0.037 8.1E-07 54.0 9.0 92 63-190 23-115 (517)
90 PRK09419 bifunctional 2',3'-cy 95.9 0.02 4.3E-07 61.3 7.2 58 123-189 677-735 (1163)
91 cd07387 MPP_PolD2_C PolD2 (DNA 95.8 0.029 6.4E-07 50.1 7.0 55 137-191 42-108 (257)
92 TIGR01530 nadN NAD pyrophospha 95.5 0.047 1E-06 53.9 7.9 59 122-189 34-93 (550)
93 cd07409 MPP_CD73_N CD73 ecto-5 95.5 0.058 1.3E-06 48.5 7.8 58 123-189 35-93 (281)
94 KOG2679|consensus 95.4 0.034 7.4E-07 50.0 5.6 64 124-191 62-127 (336)
95 cd08162 MPP_PhoA_N Synechococc 94.6 0.078 1.7E-06 48.6 6.0 64 123-189 20-90 (313)
96 PRK09418 bifunctional 2',3'-cy 94.5 0.12 2.6E-06 53.1 7.6 32 122-153 68-99 (780)
97 PRK11907 bifunctional 2',3'-cy 94.5 0.11 2.4E-06 53.5 7.3 64 123-189 145-212 (814)
98 smart00156 PP2Ac Protein phosp 94.5 0.14 3E-06 46.1 7.2 61 124-193 42-102 (271)
99 cd07405 MPP_UshA_N Escherichia 94.4 0.17 3.8E-06 45.6 7.9 60 122-189 23-86 (285)
100 PRK09419 bifunctional 2',3'-cy 94.3 0.095 2.1E-06 56.2 6.8 31 122-153 70-101 (1163)
101 cd07416 MPP_PP2B PP2B, metallo 93.6 0.28 6.1E-06 44.9 7.6 57 125-190 58-114 (305)
102 cd07415 MPP_PP2A_PP4_PP6 PP2A, 93.5 0.2 4.2E-06 45.5 6.2 60 125-193 57-116 (285)
103 cd07418 MPP_PP7 PP7, metalloph 93.3 0.25 5.4E-06 46.6 6.8 61 124-193 80-141 (377)
104 TIGR01390 CycNucDiestase 2',3' 93.2 0.33 7E-06 48.8 7.9 65 122-189 31-98 (626)
105 PRK09420 cpdB bifunctional 2', 93.1 0.52 1.1E-05 47.6 9.3 65 122-189 54-121 (649)
106 cd07420 MPP_RdgC Drosophila me 93.1 0.26 5.6E-06 45.5 6.4 47 139-193 80-126 (321)
107 cd07417 MPP_PP5_C PP5, C-termi 92.9 0.22 4.8E-06 45.8 5.8 60 125-192 75-134 (316)
108 cd07414 MPP_PP1_PPKL PP1, PPKL 92.6 0.32 6.8E-06 44.3 6.3 60 125-193 65-124 (293)
109 PF09423 PhoD: PhoD-like phosp 92.5 0.91 2E-05 43.5 9.6 137 117-253 112-274 (453)
110 PRK09558 ushA bifunctional UDP 92.3 0.39 8.5E-06 47.3 7.1 59 122-189 57-120 (551)
111 PTZ00480 serine/threonine-prot 92.2 0.29 6.4E-06 45.1 5.5 60 125-193 74-133 (320)
112 PTZ00235 DNA polymerase epsilo 92.1 2.6 5.6E-05 38.4 11.3 100 62-200 23-133 (291)
113 PTZ00239 serine/threonine prot 90.9 0.67 1.5E-05 42.4 6.5 60 125-193 58-117 (303)
114 COG1768 Predicted phosphohydro 90.5 0.83 1.8E-05 38.9 6.1 44 137-190 43-86 (230)
115 cd07382 MPP_DR1281 Deinococcus 90.5 1.9 4.1E-05 38.5 8.9 55 123-189 15-69 (255)
116 cd07380 MPP_CWF19_N Schizosacc 90.3 0.6 1.3E-05 38.3 5.1 55 125-188 13-68 (150)
117 TIGR00282 metallophosphoestera 88.6 3.2 6.9E-05 37.3 8.9 55 123-189 16-70 (266)
118 KOG3818|consensus 87.7 6 0.00013 38.0 10.3 79 136-219 312-393 (525)
119 PTZ00244 serine/threonine-prot 87.3 0.85 1.8E-05 41.6 4.4 61 124-193 66-126 (294)
120 PF13277 YmdB: YmdB-like prote 85.1 9.6 0.00021 34.0 9.7 98 123-249 13-111 (253)
121 cd07419 MPP_Bsu1_C Arabidopsis 82.8 1.8 3.9E-05 39.7 4.4 46 140-193 85-130 (311)
122 KOG4184|consensus 74.8 6.1 0.00013 37.0 5.2 94 73-184 188-282 (478)
123 COG1692 Calcineurin-like phosp 71.3 18 0.0004 32.2 7.1 55 123-189 16-70 (266)
124 KOG4419|consensus 68.3 31 0.00067 34.5 8.6 64 123-192 72-136 (602)
125 PF06858 NOG1: Nucleolar GTP-b 66.1 27 0.00058 24.1 5.6 42 137-184 13-54 (58)
126 PF06358 DUF1065: Protein of u 61.4 9.3 0.0002 28.6 2.8 42 111-152 56-97 (111)
127 KOG0373|consensus 59.8 11 0.00024 33.2 3.5 47 135-190 71-117 (306)
128 KOG2863|consensus 58.4 17 0.00037 34.3 4.6 64 124-189 15-87 (456)
129 PF06245 DUF1015: Protein of u 56.8 20 0.00044 34.2 5.1 72 108-189 142-213 (416)
130 cd01841 NnaC_like NnaC (CMP-Ne 53.4 1E+02 0.0022 24.6 8.2 57 122-183 37-96 (174)
131 cd04502 SGNH_hydrolase_like_7 50.8 94 0.002 24.8 7.6 45 136-184 49-96 (171)
132 PF00072 Response_reg: Respons 49.0 86 0.0019 22.6 6.6 50 126-188 33-82 (112)
133 cd01836 FeeA_FeeB_like SGNH_hy 48.9 86 0.0019 25.5 7.2 54 126-183 54-112 (191)
134 KOG2476|consensus 48.4 20 0.00044 34.8 3.5 55 125-188 18-76 (528)
135 TIGR00177 molyb_syn molybdenum 47.7 13 0.00029 29.8 2.0 28 119-149 51-78 (144)
136 KOG0372|consensus 47.1 21 0.00045 32.0 3.2 43 140-190 72-114 (303)
137 cd01828 sialate_O-acetylestera 46.2 1.1E+02 0.0024 24.3 7.3 44 136-183 47-93 (169)
138 PHA02538 N capsid protein; Pro 45.9 18 0.00038 33.9 2.7 49 135-184 223-275 (348)
139 cd01833 XynB_like SGNH_hydrola 45.1 1E+02 0.0022 24.1 6.9 47 136-183 39-85 (157)
140 KOG0374|consensus 44.3 14 0.00031 34.2 1.9 47 139-193 88-134 (331)
141 TIGR01551 major_capsid_P2 phag 40.9 22 0.00048 33.0 2.5 49 135-184 212-264 (327)
142 cd02068 radical_SAM_B12_BD B12 35.2 1.4E+02 0.0029 23.0 6.0 50 126-187 28-77 (127)
143 cd01825 SGNH_hydrolase_peri1 S 34.5 1.4E+02 0.0031 23.9 6.3 46 136-184 55-103 (189)
144 cd01838 Isoamyl_acetate_hydrol 33.1 2E+02 0.0043 23.1 7.0 47 137-183 63-113 (199)
145 KOG2499|consensus 33.0 1.9E+02 0.0042 28.4 7.5 38 121-158 310-347 (542)
146 PF10138 vWA-TerF-like: vWA fo 32.9 3.2E+02 0.007 23.5 8.6 88 123-224 87-194 (200)
147 cd04101 RabL4 RabL4 (Rab-like4 32.4 2E+02 0.0044 22.3 6.7 44 136-188 74-117 (164)
148 PF03489 SapB_2: Saposin-like 30.6 20 0.00044 21.3 0.4 23 2-29 13-35 (35)
149 cd00886 MogA_MoaB MogA_MoaB fa 30.6 2.6E+02 0.0056 22.4 7.1 39 118-158 43-81 (152)
150 TIGR02667 moaB_proteo molybden 30.2 2.8E+02 0.0061 22.6 7.3 36 123-159 49-84 (163)
151 cd02067 B12-binding B12 bindin 29.6 2E+02 0.0042 21.7 6.0 58 118-189 35-92 (119)
152 PF09949 DUF2183: Uncharacteri 28.9 1.3E+02 0.0028 22.8 4.7 36 128-177 54-90 (100)
153 COG2047 Uncharacterized protei 28.0 26 0.00055 30.9 0.7 61 119-186 64-125 (258)
154 PF10087 DUF2325: Uncharacteri 27.4 1.5E+02 0.0033 21.7 4.9 37 135-184 46-82 (97)
155 cd00758 MoCF_BD MoCF_BD: molyb 27.3 79 0.0017 24.8 3.4 28 119-149 43-70 (133)
156 PF08497 Radical_SAM_N: Radica 27.0 52 0.0011 30.1 2.5 23 130-152 7-32 (302)
157 cd01831 Endoglucanase_E_like E 25.9 2.4E+02 0.0053 22.4 6.2 47 138-184 56-103 (169)
158 KOG1625|consensus 25.8 3.5E+02 0.0076 27.1 8.0 88 107-197 345-438 (600)
159 PF08885 GSCFA: GSCFA family; 25.8 2.3E+02 0.0049 25.3 6.3 64 121-184 81-174 (251)
160 PRK05434 phosphoglyceromutase; 25.0 2.7E+02 0.0058 27.5 7.2 64 121-188 372-442 (507)
161 PF00994 MoCF_biosynth: Probab 24.4 3.1E+02 0.0068 21.4 6.5 28 119-149 41-68 (144)
162 PRK01018 50S ribosomal protein 24.3 3.1E+02 0.0067 20.5 6.3 22 126-148 22-43 (99)
163 PF03709 OKR_DC_1_N: Orn/Lys/A 23.5 3.2E+02 0.0069 20.8 6.1 49 126-185 27-75 (115)
164 PRK00207 sulfur transfer compl 23.4 2E+02 0.0042 22.7 5.0 46 138-184 34-79 (128)
165 PF05125 Phage_cap_P2: Phage m 23.2 58 0.0013 30.3 2.1 70 111-184 194-270 (333)
166 COG0378 HypB Ni2+-binding GTPa 23.2 1.5E+02 0.0032 25.7 4.4 26 122-149 27-52 (202)
167 cd01844 SGNH_hydrolase_like_6 23.2 2E+02 0.0042 23.2 5.2 43 136-183 56-99 (177)
168 cd03412 CbiK_N Anaerobic cobal 22.7 1.3E+02 0.0028 23.6 3.8 26 159-184 14-39 (127)
169 COG3961 Pyruvate decarboxylase 22.6 1.5E+02 0.0032 29.5 4.8 91 108-218 406-497 (557)
170 KOG0371|consensus 22.3 69 0.0015 29.0 2.3 42 141-190 90-131 (319)
171 PF10561 UPF0565: Uncharacteri 21.8 77 0.0017 29.1 2.6 46 136-183 33-84 (303)
172 PRK13720 modulator of post-seg 21.8 60 0.0013 22.6 1.5 14 67-80 33-47 (70)
173 KOG3947|consensus 21.4 1.9E+02 0.0042 26.4 5.0 17 62-78 57-73 (305)
174 cd02071 MM_CoA_mut_B12_BD meth 21.1 2.9E+02 0.0063 21.2 5.5 49 127-186 41-89 (122)
175 COG3643 Glutamate formiminotra 21.1 3.3E+02 0.0071 24.5 6.2 65 117-183 52-126 (302)
176 COG2503 Predicted secreted aci 21.1 2.8E+02 0.0061 24.9 5.8 50 137-189 192-241 (274)
177 TIGR01769 GGGP geranylgeranylg 21.0 3.3E+02 0.0072 23.4 6.3 44 136-190 23-66 (205)
178 cd01834 SGNH_hydrolase_like_2 20.9 2.5E+02 0.0054 22.3 5.3 48 136-183 60-110 (191)
179 cd01820 PAF_acetylesterase_lik 20.8 3.4E+02 0.0074 22.6 6.3 46 137-183 89-134 (214)
180 smart00852 MoCF_biosynth Proba 20.7 2.1E+02 0.0045 22.2 4.7 27 119-148 42-68 (135)
181 PF05015 Plasmid_killer: Plasm 20.6 91 0.002 23.1 2.4 17 231-247 61-77 (93)
182 PLN02618 tryptophan synthase, 20.4 1.9E+02 0.0041 27.7 5.1 26 108-134 15-40 (410)
No 1
>KOG3770|consensus
Probab=100.00 E-value=1.4e-59 Score=445.99 Aligned_cols=252 Identities=37% Similarity=0.697 Sum_probs=226.8
Q ss_pred CchhhhhhcCCCCChhhhcccccccCCCCCCC-CCCccCeeecCCCCcCCccCCCCCccCCCCCCceeEEEecccCCCCC
Q psy15259 2 DVLFDLKDQGIPLTPERVCGTVLENSNCSVKN-GPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPK 80 (257)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~C~~~~~~~~C~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~kvlhlSDiH~D~~ 80 (257)
++++++++... .++..+|+.+++ +.|.... +...+|++++|.+.+|++. |..+.+..+...+|||||||+|+|+.
T Consensus 77 ~~f~~v~~r~~-~~~~~icg~~l~-~~c~~~~~~~~~~w~~~l~~~~~~p~~--p~~~~p~~~~p~~rvlhltDiH~D~~ 152 (577)
T KOG3770|consen 77 DEFFDVFVRSA-NSPEEICGHFLP-DTCGDIVDPLENNWNLTLPGPPKPPRL--PKLPLPLKNNPTFRVLHLTDIHLDPD 152 (577)
T ss_pred HHHHHHHHHHh-cCHHHHhhcccC-CccccccchhhhcceeeccCCCCCCCC--CCCCCCCCCCCceeEEEeeccccCcc
Confidence 57888998877 688999999887 6797654 3456899999963333222 22223335568899999999999999
Q ss_pred CCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHH
Q psy15259 81 YLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAK 159 (257)
Q Consensus 81 Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~ 159 (257)
|.+|++++|..|+|||.+++.+...+.+||+||+|+.||+|+.|++++|++|++ ++++|||+||||+++|++|.++++.
T Consensus 153 Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~ 232 (577)
T KOG3770|consen 153 YSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEE 232 (577)
T ss_pred cccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHH
Confidence 999999999999999999998887888999999999999999999999999999 7679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhccCChhHHhhhhcCceEEEee
Q psy15259 160 NIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLT 239 (257)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~~w~~~~l~~~w~~wl~~~~~~~~~~~GyYs~~~ 239 (257)
+++++..++++|+++||++|||+++||||.+|+|.|+++.++...+.+|+|++++.+|+.||+.++++++++||||++.+
T Consensus 233 ~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~ 312 (577)
T KOG3770|consen 233 NLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLV 312 (577)
T ss_pred HHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEee
Confidence 99999999999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred cCCeEEEEEcCcccccCC
Q psy15259 240 EKNLRIIVLNTNVYQKLN 257 (257)
Q Consensus 240 ~~glriIsLNtn~~y~~N 257 (257)
.+|||+|||||++|+..|
T Consensus 313 ~~Glr~IslNt~~c~~~N 330 (577)
T KOG3770|consen 313 IDGLRLISLNTNYCSAPN 330 (577)
T ss_pred cCCceEEEeccccccccc
Confidence 999999999999999887
No 2
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=100.00 E-value=1.9e-44 Score=325.47 Aligned_cols=180 Identities=42% Similarity=0.800 Sum_probs=162.0
Q ss_pred EEEecccCCCCCCCCCCC--cCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCCccEEEEcC
Q psy15259 69 IIQLTDIHYDPKYLAGKT--AHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK-HKNISMVYMTG 145 (257)
Q Consensus 69 vlhlSDiH~D~~Y~~g~~--a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~-~~~~dfii~TG 145 (257)
||||||||+|+.|.+|++ +.|.++.|||... .....+||+||+| +||+|+.|+++++++|++ .+++|||||||
T Consensus 1 ~l~~sDiH~D~~Y~~~~~~~~~C~~~~~~~~~~---~~~~~~~~~~G~~-~CD~p~~l~~s~l~~i~~~~~~~dfii~tG 76 (296)
T cd00842 1 FLHISDIHYDPLYKVGSEYSANCHSPLCCRDES---GDISPPAGPWGDY-GCDSPWRLVESALEAIKKNHPKPDFILWTG 76 (296)
T ss_pred CEEeeccCCCCCCcCCCCCcCCCCCCCccCCCC---CCCCCCCCCCcCc-CCCCcHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence 799999999999999999 9999999999766 3345689999999 599999999999999998 67999999999
Q ss_pred CCCcCcccccCHHHHHH-HHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhccCChh
Q psy15259 146 DLVAHAIWETSRAKNIE-VMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPES 224 (257)
Q Consensus 146 D~v~H~~~~~s~~~~~~-~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~~w~~~~l~~~w~~wl~~~ 224 (257)
|++.|+.|+.+.+.... .++.+.+.+++.++++|||+++||||.+|.+++++. ...+|+|+.++++|+.|++.+
T Consensus 77 D~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~-----~~~~~~~~~~~~~w~~~l~~~ 151 (296)
T cd00842 77 DLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPN-----NSPSWLYDALAELWKSWLPEE 151 (296)
T ss_pred CCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCc-----ccccHHHHHHHHHHHhhcCHH
Confidence 99999999866555444 678889999999999999999999999999988874 245899999999999999999
Q ss_pred HHhhhhcCceEEEeecCCeEEEEEcCcccccCC
Q psy15259 225 ARQTFLKGGYYSFLTEKNLRIIVLNTNVYQKLN 257 (257)
Q Consensus 225 ~~~~~~~~GyYs~~~~~glriIsLNtn~~y~~N 257 (257)
+.+++.++|||++.+.+|||||+|||++|+..|
T Consensus 152 ~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~ 184 (296)
T cd00842 152 AEETFKKGGYYSVPVKPGLRVISLNTNLYYKKN 184 (296)
T ss_pred HHHHhhcceEEEEEcCCCeEEEEEeCccccccC
Confidence 999999999999987899999999999998754
No 3
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.54 E-value=2e-13 Score=121.11 Aligned_cols=134 Identities=21% Similarity=0.286 Sum_probs=85.7
Q ss_pred CceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCCccEEEE
Q psy15259 65 DEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK-HKNISMVYM 143 (257)
Q Consensus 65 ~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~-~~~~dfii~ 143 (257)
++++|+|+||+|+...=. ....-++. =+.+..+++++++.|++ .+++||||+
T Consensus 3 ~~~~f~~~sD~h~~~~~~-------------------------~~~~~~~~--~~~~~~~l~~~~~~i~~~~~~pd~ii~ 55 (262)
T cd07395 3 GPFYFIQGADPQLGLIKK-------------------------NLEGGGDE--WDEEIKLTEQAVQAINKLNPKPKFVVV 55 (262)
T ss_pred CCEEEEEecCCccchhhc-------------------------cccCchhh--hhhHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 579999999999974200 00000111 13356789999999988 568999999
Q ss_pred cCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhccCCh
Q psy15259 144 TGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPE 223 (257)
Q Consensus 144 TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~~w~~~~l~~~w~~wl~~ 223 (257)
+||++++..+...++ +..+.+.+.+++..+++|+|+++||||.... +. .+. ++.+.+.| .
T Consensus 56 ~GDl~~~~~~~~~~~---~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~----~~-------~~~-~~~f~~~~---g-- 115 (262)
T cd07395 56 CGDLVNAMPGDELRE---RQVSDLKDVLSLLDPDIPLVCVCGNHDVGNT----PT-------EES-IKDYRDVF---G-- 115 (262)
T ss_pred eCCcCCCCcchhhHH---HHHHHHHHHHhhccCCCcEEEeCCCCCCCCC----CC-------hhH-HHHHHHHh---C--
Confidence 999999887543222 2234455555555567999999999997421 10 111 11111111 1
Q ss_pred hHHhhhhcCceEEEeecCCeEEEEEcCcccc
Q psy15259 224 SARQTFLKGGYYSFLTEKNLRIIVLNTNVYQ 254 (257)
Q Consensus 224 ~~~~~~~~~GyYs~~~~~glriIsLNtn~~y 254 (257)
..||+.. ..|+|+|+|||+.++
T Consensus 116 --------~~~y~~~-~~~~~~i~lds~~~~ 137 (262)
T cd07395 116 --------DDYFSFW-VGGVFFIVLNSQLFF 137 (262)
T ss_pred --------CcceEEE-ECCEEEEEecccccc
Confidence 2467775 478999999998775
No 4
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.46 E-value=1.2e-12 Score=114.09 Aligned_cols=98 Identities=23% Similarity=0.263 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCC
Q psy15259 119 DMPLDVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSP 197 (257)
Q Consensus 119 D~P~~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~ 197 (257)
.-+...++.+++.+++ ..++||||++||++++..+ +..+.+.+.+++. ++|++.++||||...
T Consensus 21 ~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--------~~~~~~~~~l~~~--~~p~~~v~GNHD~~~------ 84 (240)
T cd07402 21 VDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--------ESYERLRELLAAL--PIPVYLLPGNHDDRA------ 84 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--------HHHHHHHHHHhhc--CCCEEEeCCCCCCHH------
Confidence 3467889999999988 4589999999999987542 1233445555543 699999999999631
Q ss_pred CCCCCCCChhhHHHHHHHHHhccCChhHHhhhhcCceEEEeecCCeEEEEEcCccc
Q psy15259 198 YFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVY 253 (257)
Q Consensus 198 ~~~~~~~~~~w~~~~l~~~w~~wl~~~~~~~~~~~GyYs~~~~~glriIsLNtn~~ 253 (257)
.+.+.|..+.. .....+|++. ..|+|+|+|||...
T Consensus 85 --------------~~~~~~~~~~~------~~~~~~~~~~-~~~~~~i~lds~~~ 119 (240)
T cd07402 85 --------------AMRAVFPELPP------APGFVQYVVD-LGGWRLILLDSSVP 119 (240)
T ss_pred --------------HHHHhhccccc------cccccceeEe-cCCEEEEEEeCCCC
Confidence 01112221110 0112356664 56899999999764
No 5
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.44 E-value=2.1e-12 Score=115.71 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=60.8
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCCccE
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK-HKNISM 140 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~-~~~~df 140 (257)
.+..++||+||||+|+... .+ ....| .| +...++.+++++++ ..++||
T Consensus 10 ~~~~~~~i~~iSD~Hl~~~--~~------------------------~~~~~----~~-~~~~l~~~i~~i~~~~~~~D~ 58 (275)
T PRK11148 10 AGEARVRILQITDTHLFAD--EH------------------------ETLLG----VN-TWESYQAVLEAIRAQQHEFDL 58 (275)
T ss_pred CCCCCEEEEEEcCcccCCC--CC------------------------Cceec----cC-HHHHHHHHHHHHHhhCCCCCE
Confidence 3446799999999998431 00 00111 22 56789999999987 568999
Q ss_pred EEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 141 VYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 141 ii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
||+|||+++.... +.++.+.+.|++. ++|+|.++||||.
T Consensus 59 vvitGDl~~~~~~--------~~~~~~~~~l~~l--~~Pv~~v~GNHD~ 97 (275)
T PRK11148 59 IVATGDLAQDHSS--------EAYQHFAEGIAPL--RKPCVWLPGNHDF 97 (275)
T ss_pred EEECCCCCCCCCH--------HHHHHHHHHHhhc--CCcEEEeCCCCCC
Confidence 9999999985421 2344555555543 5899999999997
No 6
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.29 E-value=2.2e-11 Score=108.66 Aligned_cols=98 Identities=23% Similarity=0.343 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCC
Q psy15259 121 PLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFV 200 (257)
Q Consensus 121 P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~ 200 (257)
+...++.+++.|++ .++||||++||+++....+ ..+.++.+.+.+++ + ++|+|.++||||..-. ..
T Consensus 25 ~~~~l~~~i~~i~~-~~~d~vv~~GDlv~~~~~~-----~~~~~~~~~~~l~~-l-~~p~~~v~GNHD~~~~-----~~- 90 (267)
T cd07396 25 SLEKLEEAVEEWNR-ESLDFVVQLGDIIDGDNAR-----AEEALDAVLAILDR-L-KGPVHHVLGNHDLYNP-----SR- 90 (267)
T ss_pred hHHHHHHHHHHHHc-CCCCEEEECCCeecCCCch-----HHHHHHHHHHHHHh-c-CCCEEEecCccccccc-----cH-
Confidence 45788889999987 4699999999999765432 22344555555554 3 5899999999997421 00
Q ss_pred CCCCChhhHHHHHHHHHhccCChhHHhhhhcCceEEEeecCCeEEEEEcCcc
Q psy15259 201 QGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNV 252 (257)
Q Consensus 201 ~~~~~~~w~~~~l~~~w~~wl~~~~~~~~~~~GyYs~~~~~glriIsLNtn~ 252 (257)
. .+.. .........||++.. .|+|+|+|||..
T Consensus 91 ------~----~~~~---------~~~~~~~~~yysf~~-~~~~~i~lds~~ 122 (267)
T cd07396 91 ------E----YLLL---------YTLLGLGAPYYSFSP-GGIRFIVLDGYD 122 (267)
T ss_pred ------h----hhhc---------ccccCCCCceEEEec-CCcEEEEEeCCc
Confidence 0 0000 000011235788864 599999999964
No 7
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.20 E-value=1.3e-10 Score=103.27 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCccEEEEcCCCCcCcccc-cCHHHHHHHHHHHHHHHHHH--hCCCCEEEecCCCCCC
Q psy15259 126 RSALEQIKKHKNISMVYMTGDLVAHAIWE-TSRAKNIEVMKVVAELFREY--LGDIPVIPIIGNHETH 190 (257)
Q Consensus 126 ~s~l~~i~~~~~~dfii~TGD~v~H~~~~-~s~~~~~~~~~~~~~~l~~~--~~~~pv~~~lGNHD~~ 190 (257)
+.+++.+++ .+||+||++||+++..... ............+.+.+++. +...|++.++||||.+
T Consensus 23 ~~~~~~i~~-~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~ 89 (256)
T cd07401 23 TFCSNFIDV-IKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLF 89 (256)
T ss_pred HHHHHHHHh-hCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcC
Confidence 556677765 5799999999999755321 11111111112344444432 2258999999999985
No 8
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.14 E-value=4.9e-10 Score=95.56 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=62.6
Q ss_pred ceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcC
Q psy15259 66 EISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTG 145 (257)
Q Consensus 66 ~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TG 145 (257)
++||+||||+|+...-. +.+|.. .-..+++.+.+.+++ .++||||+||
T Consensus 2 ~~ki~~isDlH~~~~~~---------------------------~~~~~~----~~~~~~~~~~~~~~~-~~~d~vv~~G 49 (199)
T cd07383 2 KFKILQFADLHFGEGEG---------------------------TCEGCE----ADLKTVAFIERVLDA-EKPDLVVLTG 49 (199)
T ss_pred ceEEEEEeeecccCCCC---------------------------CCCcch----hhHHHHHHHHHHHhh-cCCCEEEECC
Confidence 58999999999964211 012211 122334433333433 5899999999
Q ss_pred CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHH
Q psy15259 146 DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQY 216 (257)
Q Consensus 146 D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~~w~~~~l~~~ 216 (257)
|++....... .....+..+.+.+.+. ++|++.++||||.. ..+. ..+..|+-+.+.++
T Consensus 50 Dl~~~~~~~~---~~~~~~~~~~~~l~~~--~~p~~~~~GNHD~~-------g~l~-~~ql~wL~~~l~~~ 107 (199)
T cd07383 50 DLITGENTND---NSTSALDKAVSPMIDR--KIPWAATFGNHDGY-------DWIR-PSQIEWFKETSAAL 107 (199)
T ss_pred ccccCCCCch---HHHHHHHHHHHHHHHc--CCCEEEECccCCCC-------CCCC-HHHHHHHHHHHHHH
Confidence 9998665421 1233444555555432 69999999999921 1111 12456887776664
No 9
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.12 E-value=4.7e-10 Score=99.48 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPV 192 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~ 192 (257)
..+++++++.|+. .++|++|+|||++..+. ...++.+.+.|...--..|+++++||||....
T Consensus 19 ~~~~~~~~~~i~~-~~~D~~v~tGDl~~~~~--------~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 19 EELLEALLAAIEQ-LKPDLLVVTGDLTNDGE--------PEEYRRLKELLARLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEccCcCCCCC--------HHHHHHHHHHHhhccCCCceEeeCCCCcCCch
Confidence 4688889999985 68899999999998743 12334444444421124789999999998654
No 10
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.12 E-value=2.8e-10 Score=97.51 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHh-CCCCEEEecCCCCCCC
Q psy15259 120 MPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL-GDIPVIPIIGNHETHP 191 (257)
Q Consensus 120 ~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~-~~~pv~~~lGNHD~~P 191 (257)
.+..+++.+++.+++ .++|+||+|||++++... +.+ ....+.+.|++.. .++|||.++||||...
T Consensus 25 ~~~~~~~~~~~~~~~-~~~d~i~~~GD~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 25 DQFEAFEEIVELAIE-EKVDFVLIAGDLFDSNNP--SPE----ALELLIEALRRLKEAGIPVFIIAGNHDSPS 90 (223)
T ss_pred HHHHHHHHHHHHHHh-cCCCEEEECCcccCCCCC--CHH----HHHHHHHHHHHHHHCCCCEEEecCCCCCcc
Confidence 366788888888876 589999999999987642 111 2233444444432 4789999999999754
No 11
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.05 E-value=9.5e-10 Score=98.57 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=52.5
Q ss_pred CceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEc
Q psy15259 65 DEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMT 144 (257)
Q Consensus 65 ~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~T 144 (257)
+.+||+|+||+|+...+ +...++.+++.+++ .++|+|++|
T Consensus 48 ~~~rI~~lSDlH~~~~~---------------------------------------~~~~l~~~v~~i~~-~~pDlVli~ 87 (271)
T PRK11340 48 APFKILFLADLHYSRFV---------------------------------------PLSLISDAIALGIE-QKPDLILLG 87 (271)
T ss_pred CCcEEEEEcccCCCCcC---------------------------------------CHHHHHHHHHHHHh-cCCCEEEEc
Confidence 45999999999985311 23567778888876 589999999
Q ss_pred CCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 145 GDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 145 GD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
||+++.+.. . .......+.+.+++ ..|||.++||||..
T Consensus 88 GD~~d~~~~----~-~~~~~~~~L~~L~~---~~pv~~V~GNHD~~ 125 (271)
T PRK11340 88 GDYVLFDMP----L-NFSAFSDVLSPLAE---CAPTFACFGNHDRP 125 (271)
T ss_pred cCcCCCCcc----c-cHHHHHHHHHHHhh---cCCEEEecCCCCcc
Confidence 999973211 0 11122233334443 36899999999974
No 12
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=7.7e-10 Score=98.31 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++.+++.+.+ .++|+||++||++++.... ......+..+...|++.. .+|||.+.||||..
T Consensus 26 ~~l~~l~~~~~~-~~~D~lli~GDi~d~~~p~---~~~~~~~~~~l~~l~~~~-~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 26 AFLDDLLEFAKA-EQIDALLVAGDVFDTANPP---AEAQELFNAFFRNLSDAN-PIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCccCCCCCCC---HHHHHHHHHHHHHHHhcC-CceEEEEccCCCCh
Confidence 456666666655 5799999999999876432 122233344455555432 28999999999974
No 13
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.02 E-value=1.7e-09 Score=97.12 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=58.4
Q ss_pred HHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCCCCCh
Q psy15259 128 ALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTST 206 (257)
Q Consensus 128 ~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~ 206 (257)
+++++.+ ..++||||++||++...... + + .....+.+.++.....+|+++++||||.......... .
T Consensus 23 ~~~~l~~~~~~~d~vl~~GDl~~~~~~~-~-~---~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~-------~ 90 (294)
T cd00839 23 TLDHLEKELGNYDAILHVGDLAYADGYN-N-G---SRWDTFMRQIEPLASYVPYMVTPGNHEADYNFSFYKI-------K 90 (294)
T ss_pred HHHHHHhccCCccEEEEcCchhhhcCCc-c-c---hhHHHHHHHHHHHHhcCCcEEcCcccccccCCCCccc-------c
Confidence 4444544 36899999999999533221 0 0 1122333444444457999999999998643211100 0
Q ss_pred hhHHHHHHHHHhccCChhHHhhhhcCceEEEeecCCeEEEEEcCcccc
Q psy15259 207 SWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVYQ 254 (257)
Q Consensus 207 ~w~~~~l~~~w~~wl~~~~~~~~~~~GyYs~~~~~glriIsLNtn~~y 254 (257)
.+.+ .|.............||++.. .++|||+|||+...
T Consensus 91 ~~~~--------~~~~~~~~~~~~~~~~Ysf~~-g~v~fi~Lds~~~~ 129 (294)
T cd00839 91 AFFP--------RFRFPHSPSGSTSNLWYSFDV-GPVHFVSLSTEVDF 129 (294)
T ss_pred cccc--------cccccCCCCCCCCCceEEEee-CCEEEEEEeccccc
Confidence 0000 111111111123456899875 58999999998654
No 14
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.02 E-value=1.6e-09 Score=85.69 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=32.5
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..++||||++||++++..... . .. .............+|+|+++||||...
T Consensus 29 ~~~~d~ii~~GD~~~~~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 29 ENKPDFIIFLGDLVDGGNPSE----E-WR-AQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp HTTTSEEEEESTSSSSSSHHH----H-HH-HHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred cCCCCEEEeeccccccccccc----c-ch-hhhccchhhhhccccccccccccccce
Confidence 468999999999999876321 1 11 111012222345799999999999864
No 15
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.98 E-value=3.6e-09 Score=91.60 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHh---cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCC
Q psy15259 123 DVIRSALEQIKK---HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYF 199 (257)
Q Consensus 123 ~l~~s~l~~i~~---~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~ 199 (257)
..++++++.|.+ ..++|||++|||++++..- .........+.+.|++ .++|++.++||||..-.- ..
T Consensus 18 ~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~----~~~~~~~~~~~~~l~~--~~~p~~~~~GNHD~~~~l----d~ 87 (214)
T cd07399 18 EVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN----DAEWEAADKAFARLDK--AGIPYSVLAGNHDLVLAL----EF 87 (214)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC----HHHHHHHHHHHHHHHH--cCCcEEEECCCCcchhhC----CC
Confidence 455555555554 2579999999999986641 1122233334444442 369999999999964321 11
Q ss_pred CCCCCChhhHHHHHHH
Q psy15259 200 VQGPTSTSWVYESFIQ 215 (257)
Q Consensus 200 ~~~~~~~~w~~~~l~~ 215 (257)
.......+|+-+.|++
T Consensus 88 ~~~~~ql~WL~~~L~~ 103 (214)
T cd07399 88 GPRDEVLQWANEVLKK 103 (214)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 1122345788777765
No 16
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.8e-09 Score=101.35 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=57.3
Q ss_pred eeEEEecccCCC-CCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcC
Q psy15259 67 ISIIQLTDIHYD-PKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTG 145 (257)
Q Consensus 67 ~kvlhlSDiH~D-~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TG 145 (257)
|||||+||+|++ ..|..- ....+ =...++.+++.+++ .++||||++|
T Consensus 1 mkilHtSD~HLG~~~~~~~-------------------------~r~~d------~~~~f~~~l~~a~~-~~vD~vliAG 48 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLP-------------------------SRLED------QKKAFDELLEIAKE-EKVDFVLIAG 48 (390)
T ss_pred CeeEEecccccchhhccCc-------------------------cchHH------HHHHHHHHHHHHHH-ccCCEEEEcc
Confidence 699999999998 333221 11111 23566667776665 5789999999
Q ss_pred CCCcCcccccCHHHHHHHHHHHHHHHHHHh-CCCCEEEecCCCCCCC
Q psy15259 146 DLVAHAIWETSRAKNIEVMKVVAELFREYL-GDIPVIPIIGNHETHP 191 (257)
Q Consensus 146 D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~-~~~pv~~~lGNHD~~P 191 (257)
|+.++.... .+ ++..+.+.|++.- .++|||.+.||||..-
T Consensus 49 DlFd~~~Ps--~~----a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 49 DLFDTNNPS--PR----ALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred ccccCCCCC--HH----HHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 999986543 22 3333334444322 4799999999999854
No 17
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.96 E-value=2.5e-09 Score=92.10 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++.+++.+++ .++|+|+++||++++..... ..+.+.+++.....|+|.++||||..
T Consensus 19 ~~~~~~~~~~~~-~~~d~vl~~GD~~~~~~~~~---------~~~~~~l~~l~~~~~v~~v~GNHD~~ 76 (223)
T cd07385 19 ERLERLVEKINA-LKPDLVVLTGDLVDGSVDVL---------ELLLELLKKLKAPLGVYAVLGNHDYY 76 (223)
T ss_pred HHHHHHHHHHhc-cCCCEEEEcCcccCCcchhh---------HHHHHHHhccCCCCCEEEECCCcccc
Confidence 456777777776 57999999999998764321 22334444433468999999999974
No 18
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.95 E-value=3.1e-09 Score=98.32 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHH-HHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKV-VAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~-~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
...++.+++.+++ .++|+||++||+++..... +. ........ +.+.+++. ++|||.++||||..
T Consensus 25 ~~~l~~ii~~a~~-~~vD~VliaGDlfD~~~~~-~~-~~~~~~~~~l~~~L~~~--gi~v~~I~GNHD~~ 89 (340)
T PHA02546 25 LKFIKQAIEYSKA-HGITTWIQLGDTFDVRKAI-TQ-NTMNFVREKIFDLLKEA--GITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHH-cCCCEEEECCcccCCCCCC-CH-HHHHHHHHHHHHHHHHC--CCeEEEEccCCCcc
Confidence 3566666666665 5899999999999764221 11 12222222 44455432 69999999999974
No 19
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.93 E-value=5.3e-09 Score=98.79 Aligned_cols=88 Identities=27% Similarity=0.361 Sum_probs=59.6
Q ss_pred CceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEc
Q psy15259 65 DEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMT 144 (257)
Q Consensus 65 ~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~T 144 (257)
.++||+|+||+|++..... ..+. +-.+..++.+++.+.+ .++|+||++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~------------------------------~~r~-~D~~~~f~eil~~a~~-~~vD~VLia 49 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGEND------------------------------PVRG-DDSWNTFEEVLQIAKE-QDVDMILLG 49 (405)
T ss_pred CceEEEEEcCCCCCCccCC------------------------------chhh-hhHHHHHHHHHHHHHH-cCCCEEEEC
Confidence 5799999999999732110 0011 2245778888888876 589999999
Q ss_pred CCCCcCcccccCHHHHHHHHHHHHHHHHHH-----------------------h-----------CCCCEEEecCCCCCC
Q psy15259 145 GDLVAHAIWETSRAKNIEVMKVVAELFREY-----------------------L-----------GDIPVIPIIGNHETH 190 (257)
Q Consensus 145 GD~v~H~~~~~s~~~~~~~~~~~~~~l~~~-----------------------~-----------~~~pv~~~lGNHD~~ 190 (257)
||++++...+ ++ ++..+.+.|+++ | -++|||.+.||||..
T Consensus 50 GDLFd~~~Ps--~~----~~~~~~~~lr~~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p 123 (405)
T TIGR00583 50 GDLFHENKPS--RK----SLYQVLRSLRLYCLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDP 123 (405)
T ss_pred CccCCCCCCC--HH----HHHHHHHHHHHhhccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCc
Confidence 9999987653 33 333334444431 1 158999999999973
No 20
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.91 E-value=3.8e-09 Score=85.01 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
++.+++.+.+ .++|+|++|||+++.... ........+++.++..+ .|++.++||||.
T Consensus 24 l~~~~~~~~~-~~~d~vi~~GDl~~~~~~-----~~~~~~~~~~~~l~~~~--~~~~~v~GNHD~ 80 (144)
T cd07400 24 LDRLLAEIKA-LDPDLVVITGDLTQRGLP-----EEFEEAREFLDALPAPL--EPVLVVPGNHDV 80 (144)
T ss_pred HHHHHHHHhc-cCCCEEEECCCCCCCCCH-----HHHHHHHHHHHHccccC--CcEEEeCCCCeE
Confidence 5556666655 579999999999975431 11222233333333221 599999999995
No 21
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.90 E-value=5.5e-09 Score=98.90 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++.+++.+.+ .++|+||++||+++..... ......+..+...|++. ++|||.+.||||..
T Consensus 26 ~~l~~l~~~i~~-~~~D~viIaGDifD~~~p~---~~a~~~~~~~l~~L~~~--~~~v~~I~GNHD~~ 87 (407)
T PRK10966 26 AFLDWLLEQVQE-HQVDAIIVAGDIFDTGSPP---SYARELYNRFVVNLQQT--GCQLVVLAGNHDSV 87 (407)
T ss_pred HHHHHHHHHHHh-cCCCEEEECCccccCCCCc---HHHHHHHHHHHHHHHhc--CCcEEEEcCCCCCh
Confidence 345556666655 5899999999999875432 11222334444555543 58999999999974
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.86 E-value=1.1e-08 Score=89.68 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
...++.+++.+++ .++|+||+|||+++.. +.. ..+.+.+++. .+.|||.++||||.+
T Consensus 18 ~~~l~~~~~~~~~-~~~d~vv~~GDl~~~~------~~~----~~~~~~l~~~-~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 18 EEMLETLAQYLKK-QKIDHLHIAGDISNDF------QRS----LPFIEKLQEL-KGIKVTFNAGNHDML 74 (239)
T ss_pred HHHHHHHHHHHHh-cCCCEEEECCccccch------hhH----HHHHHHHHHh-cCCcEEEECCCCCCC
Confidence 3457788888876 4799999999999742 111 1233444443 468999999999975
No 23
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.85 E-value=1.2e-08 Score=90.99 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCc-CcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVA-HAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQ 201 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~-H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~ 201 (257)
.+.+.+.+.+++ .++||||++||++. .+......+...+.+..+++.++ .++|+|.++||||.... +.
T Consensus 19 ~~~~~~~~~~~~-~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~---~~~P~~~v~GNHD~~~~--~~----- 87 (277)
T cd07378 19 AVAKAMAKVAAE-LGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS---LQVPWYLVLGNHDYSGN--VS----- 87 (277)
T ss_pred HHHHHHHHHHHh-cCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh---hcCCeEEecCCcccCCC--ch-----
Confidence 444544444443 58999999999974 33322111111122333433332 36999999999997521 10
Q ss_pred CCCChhhHHHHHHHHHhccCChhHHhhhhcCceEEEeec-----CCeEEEEEcCcccc
Q psy15259 202 GPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTE-----KNLRIIVLNTNVYQ 254 (257)
Q Consensus 202 ~~~~~~w~~~~l~~~w~~wl~~~~~~~~~~~GyYs~~~~-----~glriIsLNtn~~y 254 (257)
.+..|.... ....|. ....||++... +++|||+|||+.+.
T Consensus 88 ----~~~~~~~~~-~~~~~~--------~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~ 132 (277)
T cd07378 88 ----AQIDYTKRP-NSPRWT--------MPAYYYRVSFPFPSSDTTVEFIMIDTVPLC 132 (277)
T ss_pred ----heeehhccC-CCCCcc--------CcchheEEEeecCCCCCEEEEEEEeChhHc
Confidence 010110000 000010 12467888654 37999999999874
No 24
>KOG1432|consensus
Probab=98.78 E-value=3.2e-08 Score=90.10 Aligned_cols=98 Identities=22% Similarity=0.440 Sum_probs=58.5
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEE
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMV 141 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfi 141 (257)
....+|||+++||+|+.- |.+..|...+ |.. . .|=+-..+. +.++++-+..+||||
T Consensus 49 ~~~g~fKIlqvaDlH~g~----g~~~~c~d~~--------------p~~----~-~~csD~nTt-~F~~rvL~sE~PDlV 104 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGF----GRETRCRDVL--------------PSE----E-ACCSDLNTT-NFVSRVLASEKPDLV 104 (379)
T ss_pred cCCCceEEEEeecccccc----CCCccccccC--------------cch----h-hhhcCccHH-HHHHHHHhccCCCEE
Confidence 446789999999999964 4455555431 000 1 122222333 344444444689999
Q ss_pred EEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 142 YMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 142 i~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+||||++... .+++......+.+.-.+ ++ ++|--.++||||-
T Consensus 105 VfTGD~i~g~---~t~Da~~sl~kAvaP~I-~~--~IPwA~~lGNHDd 146 (379)
T KOG1432|consen 105 VFTGDNIFGH---STQDAATSLMKAVAPAI-DR--KIPWAAVLGNHDD 146 (379)
T ss_pred EEeCCccccc---ccHhHHHHHHHHhhhHh-hc--CCCeEEEeccccc
Confidence 9999999752 23443333333332222 22 7999999999994
No 25
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.74 E-value=3.6e-08 Score=86.74 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHHh-cCCccEEEEcCCCCcCccccc-CHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 127 SALEQIKK-HKNISMVYMTGDLVAHAIWET-SRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 127 s~l~~i~~-~~~~dfii~TGD~v~H~~~~~-s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.+++.+.. ..++|.|+++||+++...-.. ..... ..+..+.+.+++ .++|||.+.||||..
T Consensus 21 ~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~-~~~~~~l~~l~~--~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 21 AFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFA-REIAAALKALSD--SGVPCYFMHGNRDFL 83 (241)
T ss_pred HHHHHHHhhhccCCEEEEccceeccccccCcCCHHH-HHHHHHHHHHHH--cCCeEEEEeCCCchh
Confidence 33444433 347999999999997422110 01111 122233333432 258999999999964
No 26
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.72 E-value=3.2e-08 Score=79.98 Aligned_cols=45 Identities=33% Similarity=0.585 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
.++++++.+ + ++|+||++||++++ +.+.+.+++. |++.+.||||.
T Consensus 15 ~~~~~~~~~-~--~~d~vi~~GDi~~~--------------~~~~~~~~~~----~~~~v~GNHD~ 59 (156)
T PF12850_consen 15 ALEAVLEYI-N--EPDFVIILGDIFDP--------------EEVLELLRDI----PVYVVRGNHDN 59 (156)
T ss_dssp HHHHHHHHH-T--TESEEEEES-SCSH--------------HHHHHHHHHH----EEEEE--CCHS
T ss_pred HHHHHHHHh-c--CCCEEEECCCchhH--------------HHHHHHHhcC----CEEEEeCCccc
Confidence 466777777 2 69999999999873 3445555544 79999999996
No 27
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=98.65 E-value=1.4e-07 Score=82.60 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=52.5
Q ss_pred EEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh-cCCccEEEEcCCC
Q psy15259 69 IIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK-HKNISMVYMTGDL 147 (257)
Q Consensus 69 vlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~-~~~~dfii~TGD~ 147 (257)
|.++||+|++.....+ +..||.- -..+++...+.+++ .+++|+||++||+
T Consensus 1 ~~~~sDlHl~~~~~~~------------------------~~~~g~~-----~~~~~~~i~~~~~~~~~~~D~viiaGDl 51 (232)
T cd07393 1 IFAIADLHLNLDPTKP------------------------MDVFGPE-----WKNHTEKIKENWDNVVAPEDIVLIPGDI 51 (232)
T ss_pred CeEEEeeccCCCCCCC------------------------CcccCcc-----HHHHHHHHHHHHHhcCCCCCEEEEcCCC
Confidence 4689999997544332 2234432 23567777776666 4589999999999
Q ss_pred CcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 148 VAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 148 v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
+..... +. .....+.|++ .+ .|+|.++||||.+
T Consensus 52 ~~~~~~----~~----~~~~l~~l~~-l~-~~v~~V~GNHD~~ 84 (232)
T cd07393 52 SWAMKL----EE----AKLDLAWIDA-LP-GTKVLLKGNHDYW 84 (232)
T ss_pred ccCCCh----HH----HHHHHHHHHh-CC-CCeEEEeCCcccc
Confidence 854321 11 1222334443 33 4899999999973
No 28
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.57 E-value=3.5e-07 Score=81.59 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 126 RSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 126 ~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+..++.+.+..+||+||++||+++.+.+..+.+ -.+..+.+.+.|...-...|++.++||||.
T Consensus 34 r~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~-~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi 96 (257)
T cd08163 34 RRNWRYMQKQLKPDSTIFLGDLFDGGRDWADEY-WKKEYNRFMRIFDPSPGRKMVESLPGNHDI 96 (257)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCeeCcHHH-HHHHHHHHHHHhcCCCccceEEEeCCCccc
Confidence 344444544358999999999999765432211 111223333333221124789999999997
No 29
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.54 E-value=2.7e-07 Score=80.74 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=36.8
Q ss_pred HHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 125 IRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 125 ~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.+.+++.+.+ ..++|+|+++||+++...-........+.+..+.+.|++. +.|||.++||||..
T Consensus 17 ~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~--~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 17 TALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ--GVPCYFMHGNRDFL 81 (231)
T ss_pred HHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC--CCeEEEEcCCCchh
Confidence 3445555555 2379999999999973211101111112223333444432 58999999999964
No 30
>PLN02533 probable purple acid phosphatase
Probab=98.52 E-value=8.5e-07 Score=84.58 Aligned_cols=105 Identities=22% Similarity=0.379 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCCCCCh
Q psy15259 127 SALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTST 206 (257)
Q Consensus 127 s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~ 206 (257)
+++++|++ .++||||++||++.-+.. +.. -....+.+......+|+++++||||........+.
T Consensus 156 ~tl~~i~~-~~pD~vl~~GDl~y~~~~----~~~---wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~-------- 219 (427)
T PLN02533 156 STLEHVSK-WDYDVFILPGDLSYANFY----QPL---WDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPE-------- 219 (427)
T ss_pred HHHHHHHh-cCCCEEEEcCccccccch----HHH---HHHHHHHhhhHhhcCceEEeCccccccccccccCc--------
Confidence 45666765 589999999999864321 111 12223333333346899999999997421100000
Q ss_pred hhHHHHHHHHHhccCChhHHhhhhcCceEEEeecCCeEEEEEcCccc
Q psy15259 207 SWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVY 253 (257)
Q Consensus 207 ~w~~~~l~~~w~~wl~~~~~~~~~~~GyYs~~~~~glriIsLNtn~~ 253 (257)
.+.....-|. ++... ......-|||+.. .++++|+|||..-
T Consensus 220 --~f~~y~~rf~--mP~~~-~g~~~~~yYSfd~-g~vhfI~Lds~~~ 260 (427)
T PLN02533 220 --KFTAYNARWR--MPFEE-SGSTSNLYYSFNV-YGVHIIMLGSYTD 260 (427)
T ss_pred --Cccchhhccc--CCccc-cCCCCCceEEEEE-CCEEEEEEeCCcc
Confidence 0111112221 11110 0112346899984 6799999999753
No 31
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.42 E-value=9e-07 Score=80.05 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=52.5
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEE
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMV 141 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfi 141 (257)
.....+||+|+||+|+.... ......+.++.. ..+|+|
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~-----------------------------------------~~~~~~~~~i~~-~~~Dli 77 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR-----------------------------------------EEKLALLIAIAN-ELPDLI 77 (284)
T ss_pred cccCCeEEEEeehhhhchhh-----------------------------------------HHHHHHHHHHHh-cCCCEE
Confidence 45577889999999996532 233445666665 345999
Q ss_pred EEcCCCCcC-cccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCC
Q psy15259 142 YMTGDLVAH-AIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPV 192 (257)
Q Consensus 142 i~TGD~v~H-~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~ 192 (257)
++|||+++- .. + ....+.+.+++.-...+||.+.||||....
T Consensus 78 vltGD~~~~~~~-----~----~~~~~~~~L~~L~~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 78 VLTGDYVDGDRP-----P----GVAALALFLAKLKAPLGVFAVLGNHDYGVD 120 (284)
T ss_pred EEEeeeecCCCC-----C----CHHHHHHHHHhhhccCCEEEEecccccccc
Confidence 999999984 11 1 112223333333345779999999998653
No 32
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.42 E-value=1.1e-06 Score=77.42 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=42.3
Q ss_pred HHHHHHHHHHh-c---CCccEEEEcCCCCcCcc-cccC-----HHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 124 VIRSALEQIKK-H---KNISMVYMTGDLVAHAI-WETS-----RAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 124 l~~s~l~~i~~-~---~~~dfii~TGD~v~H~~-~~~s-----~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.++.+++.++. . .++|.++++||+++... |... .+...+.++.+.+.|++.-.++||+.++||||..
T Consensus 18 ~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~v~~ipGNHD~~ 94 (243)
T cd07386 18 AFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSHIKIIIIPGNHDAV 94 (243)
T ss_pred HHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccCCeEEEeCCCCCcc
Confidence 44556666655 2 26899999999998742 1111 1112233455555665544568999999999975
No 33
>PRK09453 phosphodiesterase; Provisional
Probab=98.41 E-value=8.2e-07 Score=74.71 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
++.+++.+++ .++|.|+++||++++.....-++ ......+.+.+++. +.+++.+.||||..
T Consensus 16 ~~~~l~~~~~-~~~d~ii~lGDi~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 16 TEKALELFAQ-SGADWLVHLGDVLYHGPRNPLPE--GYAPKKVAELLNAY--ADKIIAVRGNCDSE 76 (182)
T ss_pred HHHHHHHHHh-cCCCEEEEcccccccCcCCCCcc--ccCHHHHHHHHHhc--CCceEEEccCCcch
Confidence 5667777765 57999999999998653111000 00112344555543 46899999999964
No 34
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=98.39 E-value=1.7e-06 Score=82.79 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred CCCEEEecCCCCCCCCCCCCCC
Q psy15259 177 DIPVIPIIGNHETHPVNVFSPY 198 (257)
Q Consensus 177 ~~pv~~~lGNHD~~P~n~f~~~ 198 (257)
++|.|.++||||......|++.
T Consensus 183 ~~Pwy~v~GNHD~~~~G~~p~~ 204 (496)
T TIGR03767 183 DLPWYSVFGNHDDLVQGTNPPG 204 (496)
T ss_pred CCceeeeccCCcccccccCCCC
Confidence 5899999999999988888774
No 35
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.38 E-value=1.5e-06 Score=71.76 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=32.6
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHh---CCCCEEEecCCCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL---GDIPVIPIIGNHETH 190 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~---~~~pv~~~lGNHD~~ 190 (257)
.+||+|+++||+++...+.. .+ ........+++.+ ++.|++.++||||..
T Consensus 37 ~~pd~vv~~GDl~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 37 LQPDVVFVLGDLFDEGKWST-DE----EWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred cCCCEEEECCCCCCCCccCC-HH----HHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 47999999999997655421 11 1112222333332 468999999999984
No 36
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.36 E-value=1.8e-06 Score=75.47 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..++.+++.+++ .++|+||.+||++..... .+ ....+.+.+.+. +.|++.++||||.
T Consensus 18 ~~le~l~~~~~~-~~~D~vv~~GDl~~~g~~---~~----~~~~~l~~l~~l--~~pv~~V~GNhD~ 74 (224)
T cd07388 18 EALEKLVGLAPE-TGADAIVLIGNLLPKAAK---SE----DYAAFFRILGEA--HLPTFYVPGPQDA 74 (224)
T ss_pred HHHHHHHHHHhh-cCCCEEEECCCCCCCCCC---HH----HHHHHHHHHHhc--CCceEEEcCCCCh
Confidence 356677776654 579999999999986521 11 223344444432 4799999999995
No 37
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.36 E-value=8.7e-07 Score=73.71 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=29.9
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
.++|+||++||++..... + ....+ +.+++ + +.|+|.++||||.
T Consensus 22 ~~~D~vv~~GDl~~~~~~----~----~~~~~-~~l~~-~-~~p~~~v~GNHD~ 64 (188)
T cd07392 22 EEADAVIVAGDITNFGGK----E----AAVEI-NLLLA-I-GVPVLAVPGNCDT 64 (188)
T ss_pred cCCCEEEECCCccCcCCH----H----HHHHH-HHHHh-c-CCCEEEEcCCCCC
Confidence 589999999999875432 1 11222 44443 3 5899999999996
No 38
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.35 E-value=6.3e-07 Score=74.83 Aligned_cols=62 Identities=26% Similarity=0.256 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
++++.+.+.+.+ .++|.+|++||+++... ....+.. .... .+.....+++|+.+.||||...
T Consensus 28 ~~~~~l~~~~~~-~~~d~lii~GDl~~~~~-~~~~~~~-~~~~----~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 28 DTLERLDRLIEE-YGPERLIILGDLKHSFG-GLSRQEF-EEVA----FLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCccccccc-ccCHHHH-HHHH----HHHhccCCCeEEEEcccCccch
Confidence 556666666654 58999999999995332 2222111 1111 2222234789999999999853
No 39
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.31 E-value=2.3e-06 Score=71.74 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=33.8
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHh---CCCCEEEecCCCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL---GDIPVIPIIGNHETHP 191 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~---~~~pv~~~lGNHD~~P 191 (257)
..+||+||++||+++.... ..++...+..+.+.+.+...- .++|++.++||||...
T Consensus 43 ~~~pd~vi~lGDl~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 43 RLKPDVVLFLGDLFDGGRI-ADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred hcCCCEEEEeccccCCcEe-CCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 4589999999999975532 222222222222323222111 1689999999999853
No 40
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.29 E-value=2.3e-06 Score=70.23 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=30.7
Q ss_pred HHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 128 ALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 128 ~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
+++.++..+++|.|+++||+++ ..+.+.+++. +.|++.+.||||..
T Consensus 19 ~~~~~~~~~~~d~ii~~GD~~~---------------~~~~~~l~~~--~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 19 PVELFNLESNVDLVIHAGDLTS---------------PFVLKEFEDL--AAKVIAVRGNNDGE 64 (158)
T ss_pred HHHHHhhccCCCEEEEcCCCCC---------------HHHHHHHHHh--CCceEEEccCCCch
Confidence 4444444337999999999983 1123344433 46899999999963
No 41
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.28 E-value=4.8e-06 Score=81.00 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=57.0
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh-------
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK------- 134 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~------- 134 (257)
...+.++++++||+|++... . ....++.+++.+..
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~------------------------------------~--~~~~l~~li~~L~g~~~~~~~ 280 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKE------------------------------------F--LEDAFEKFIDWLNGEVGNEEE 280 (504)
T ss_pred cCCCccEEEEEcccCCCCcc------------------------------------h--hHHHHHHHHHHHhCCCccchh
Confidence 34567899999999985310 0 01234556666651
Q ss_pred -cCCccEEEEcCCCCcCcccccC------HHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 135 -HKNISMVYMTGDLVAHAIWETS------RAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 135 -~~~~dfii~TGD~v~H~~~~~s------~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..+++.+|++||+++....... .......++.+.+.|++.-..+||+.++||||...
T Consensus 281 ~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 281 IASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQIPEDIKIIISPGNHDAVR 344 (504)
T ss_pred hhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhhhcCCeEEEecCCCcchh
Confidence 2478999999999985321111 11112233455556665445689999999999753
No 42
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.23 E-value=2.7e-06 Score=75.02 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=30.1
Q ss_pred HHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 131 QIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 131 ~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.+++ .++|+|+++||+.+.. . .+.+.|++ + ..|+|.++||||.+
T Consensus 20 ~l~~-~~pD~Vl~~GDi~~~~---------~----~~~~~l~~-l-~~p~~~V~GNHD~~ 63 (238)
T cd07397 20 ALHL-LQPDLVLFVGDFGNES---------V----QLVRAISS-L-PLPKAVILGNHDAW 63 (238)
T ss_pred HHhc-cCCCEEEECCCCCcCh---------H----HHHHHHHh-C-CCCeEEEcCCCccc
Confidence 3443 4789999999998532 1 23334443 3 37899999999975
No 43
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.20 E-value=1.3e-06 Score=72.07 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=29.6
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++|+++++||+++..... + ... .++..-...|||.++||||.+
T Consensus 24 ~~~~d~li~~GDi~~~~~~~---~----~~~----~~~~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 24 APDADILVLAGDIGYLTDAP---R----FAP----LLLALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CCCCCEEEECCCCCCCcchH---H----HHH----HHHhhcCCccEEEeCCCcceE
Confidence 35899999999999754321 0 011 111222468999999999974
No 44
>PHA02239 putative protein phosphatase
Probab=98.10 E-value=1.1e-05 Score=71.00 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++.+++.+.. ....|.++++||+++.+..+ .+.+..+.+.++. ..+++.++||||..
T Consensus 14 ~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s------~~v~~~l~~~~~~---~~~~~~l~GNHE~~ 73 (235)
T PHA02239 14 QKLLTIMDKINNERKPEETIVFLGDYVDRGKRS------KDVVNYIFDLMSN---DDNVVTLLGNHDDE 73 (235)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCCh------HHHHHHHHHHhhc---CCCeEEEECCcHHH
Confidence 457888888865 22369999999999977421 2333444433321 35799999999974
No 45
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.08 E-value=1.3e-05 Score=68.60 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
+.+.++...+++. .+||+|+++||+++.+.+.. .++..+.++.+.+.+.. -+++|++.++||||.-
T Consensus 28 ~yl~r~~~~a~~~-l~PD~Vi~lGDL~D~G~~~~-~~e~~e~l~Rf~~If~~-~~~~~~~~VpGNHDIG 93 (195)
T cd08166 28 RYLKKTYHLALNF-VQPDIVIFLGDLMDEGSIAN-DDEYYSYVQRFINIFEV-PNGTKIIYLPGDNDIG 93 (195)
T ss_pred HHHHHHHHHHHhc-cCCCEEEEeccccCCCCCCC-HHHHHHHHHHHHHHhcC-CCCCcEEEECCCCCcC
Confidence 3455555555554 48999999999999887643 33334444444433322 3579999999999974
No 46
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.04 E-value=1.2e-05 Score=70.41 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHh---cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 121 PLDVIRSALEQIKK---HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 121 P~~l~~s~l~~i~~---~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
|....+++++.+.+ ..++|.+|++||+.. +.... ...+.+.+.+++ . ..+++.+.||||...
T Consensus 39 P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h-~~~~~------~~~~~~~~~l~~-~-~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 39 PGFQFREIIERALSIADKYGIEALIINGDLKH-EFKKG------LEWRFIREFIEV-T-FRDLILIRGNHDALI 103 (225)
T ss_pred ChhHHHHHHHHHHHHHhhcCCCEEEEcCcccc-ccCCh------HHHHHHHHHHHh-c-CCcEEEECCCCCCcc
Confidence 44334445554443 357999999999994 43211 223334444544 2 368999999999743
No 47
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.03 E-value=1.2e-05 Score=64.17 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.++|+|+++||++..... +.++.+.+.+++ ++..+++.++||||..
T Consensus 18 ~~~D~vi~~GD~~~~~~~--------~~~~~~~~~l~~-~~~~~~~~v~GNHD~~ 63 (135)
T cd07379 18 PDGDVLIHAGDLTERGTL--------EELQKFLDWLKS-LPHPHKIVIAGNHDLT 63 (135)
T ss_pred CCCCEEEECCCCCCCCCH--------HHHHHHHHHHHh-CCCCeEEEEECCCCCc
Confidence 479999999999865432 122334444543 3333468899999974
No 48
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.97 E-value=1.9e-05 Score=64.19 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
.++.+++.++ ++|.|+++||++....... ++ ...|++.+.||||...
T Consensus 14 ~~~~~~~~~~---~~d~ii~~GD~~~~~~~~~---------------~~---~~~~~~~V~GNhD~~~ 60 (155)
T cd00841 14 LLEKALELFG---DVDLIIHAGDVLYPGPLNE---------------LE---LKAPVIAVRGNCDGEV 60 (155)
T ss_pred HHHHHHHHhc---CCCEEEECCccccccccch---------------hh---cCCcEEEEeCCCCCcC
Confidence 4455566553 3899999999987543110 11 1468999999999754
No 49
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.95 E-value=1.4e-05 Score=68.45 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCccEEEEcCCCCcCcccc--cCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIWE--TSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~--~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
.++|.++++||+++-.... .........+..+...+ -.+++||.+.||||..-
T Consensus 29 ~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~v~~v~GNHD~~~ 83 (217)
T cd07398 29 GEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA---DRGTRVYYVPGNHDFLL 83 (217)
T ss_pred CCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH---HCCCeEEEECCCchHHH
Confidence 4899999999999622111 11111111112222222 24689999999999753
No 50
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=97.92 E-value=3.2e-05 Score=59.22 Aligned_cols=47 Identities=28% Similarity=0.307 Sum_probs=30.7
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..++|+||++||+++...... .. .... .........|++.++||||+
T Consensus 24 ~~~~~~vi~~GD~~~~~~~~~--~~---~~~~---~~~~~~~~~~~~~~~GNHDi 70 (131)
T cd00838 24 AEKPDFVLVLGDLVGDGPDPE--EV---LAAA---LALLLLLGIPVYVVPGNHDI 70 (131)
T ss_pred ccCCCEEEECCcccCCCCCch--HH---HHHH---HHHhhcCCCCEEEeCCCceE
Confidence 368999999999998664321 11 1111 12222347999999999994
No 51
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.84 E-value=7.8e-05 Score=61.98 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 122 LDVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 122 ~~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
....+.+++.+.+ .+++|.||++||++..... . .. .+.+++ + ..|++.+.||||...
T Consensus 26 ~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~----~----~~---~~~l~~-~-~~~~~~v~GNHD~~~ 83 (168)
T cd07390 26 EEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA----G----TE---LELLSR-L-NGRKHLIKGNHDSSL 83 (168)
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh----H----HH---HHHHHh-C-CCCeEEEeCCCCchh
Confidence 3456777888877 5679999999999975432 1 01 333443 3 368999999999743
No 52
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=5.6e-05 Score=66.20 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHh-CCCCEEEecCCCCCCCCCCCC
Q psy15259 123 DVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL-GDIPVIPIIGNHETHPVNVFS 196 (257)
Q Consensus 123 ~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~-~~~pv~~~lGNHD~~P~n~f~ 196 (257)
.+.+..++.++. ..+.|-+++.||+++ .|.... .-.+..+.+...|++.. .+++||.+.||||+.-.+.|.
T Consensus 14 ~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w~g~~-~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfll~~~f~ 86 (237)
T COG2908 14 ALTAFFLDFLREEAAQADALYILGDIFD--GWIGDD-EPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFLLGKRFA 86 (237)
T ss_pred HHHHHHHHHHHhccccCcEEEEechhhh--hhhcCC-cccHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHH
Confidence 345556666766 447799999999996 343221 12223344444444433 479999999999975444333
No 53
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.73 E-value=9.9e-05 Score=65.61 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCcc-EEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNIS-MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~d-fii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+.++++.+++ .+++ +++.+||++....... ...-+.+.+.|+.. + .-+.++||||+
T Consensus 24 ~rl~~~i~~~r~-~~~~~l~l~~GD~~~g~~~~~-----~~~g~~~~~~l~~l--~-~d~~~~GNHef 82 (257)
T cd07406 24 ARFATLRKQLRK-ENPNTLVLFSGDVLSPSLLST-----ATKGKQMVPVLNAL--G-VDLACFGNHEF 82 (257)
T ss_pred HHHHHHHHHHHh-cCCCEEEEECCCccCCccchh-----hcCCccHHHHHHhc--C-CcEEeeccccc
Confidence 577888888886 3556 9999999997653311 00012233444432 2 24778999996
No 54
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.71 E-value=9.8e-05 Score=66.56 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++.+++.++-.++.|.++++||+++.+..+ . .+.+.+++. +.+++.++||||..
T Consensus 14 ~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s------~----~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 14 DELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS------L----EVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred HHHHHHHHhcCCCCCCCEEEEeCCccCCCcCH------H----HHHHHHHhc--CCCeEEEecChhHH
Confidence 45677777774234689999999999977531 1 233444433 35799999999973
No 55
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.63 E-value=0.00013 Score=62.72 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..++.+++.+....+.|.+++.||+++.+... .++.+.+++ .+++.+.||||..-
T Consensus 14 ~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~----------~~~~~~l~~----~~~~~v~GNhe~~~ 68 (207)
T cd07424 14 SLLQKALDAVGFDPARDRLISVGDLIDRGPES----------LACLELLLE----PWFHAVRGNHEQMA 68 (207)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH----------HHHHHHHhc----CCEEEeECCChHHH
Confidence 45677777765334689999999999876431 123334443 35899999999753
No 56
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.61 E-value=0.00016 Score=62.39 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHh-------cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHh-CCCCEEEecCCCCCCCC
Q psy15259 123 DVIRSALEQIKK-------HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL-GDIPVIPIIGNHETHPV 192 (257)
Q Consensus 123 ~l~~s~l~~i~~-------~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~-~~~pv~~~lGNHD~~P~ 192 (257)
..++.+|+.+.- ..+.|.++++||+++.+.. ..+.++.+.++-.+.. .+.+|+.++||||..-.
T Consensus 11 ~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~------~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~l 82 (208)
T cd07425 11 DAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPD------VIEILWLLYKLEQEAAKAGGKVHFLLGNHELMNL 82 (208)
T ss_pred HHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcC------HHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHHHH
Confidence 467777776641 2468999999999997642 2233444433322221 25789999999997654
No 57
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.60 E-value=0.00016 Score=63.47 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCcc-EEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNIS-MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~d-fii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+..+.++++++++ ..+| +++.+||++.+..+.. ...-..+.+.|+.. ...+.++||||+
T Consensus 22 ~~~l~~~v~~~~~-~~~~~l~v~~GD~~~~~~~~~-----~~~~~~~~~~l~~~---g~d~~~~GNHe~ 81 (252)
T cd00845 22 AARLATLIKEERA-ENENTLLLDAGDNFDGSPPST-----ATKGEANIELMNAL---GYDAVTIGNHEF 81 (252)
T ss_pred HHHHHHHHHHHHh-cCCCeEEEeCCccCCCccchh-----ccCCcHHHHHHHhc---CCCEEeeccccc
Confidence 3677888888887 3566 8899999999876531 11122344555543 235678999996
No 58
>KOG3662|consensus
Probab=97.58 E-value=0.00043 Score=65.23 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=64.7
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEE
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMV 141 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfi 141 (257)
.+++.+||+.++|.|+=-.+.-. ...+....|+ - ..-++..++.+..-.+||.+
T Consensus 44 ~~~n~~ki~~vaDPQilg~~~~~----------------------~~~~~Ldk~~-~---D~~lrr~f~~~~~~lkPdvv 97 (410)
T KOG3662|consen 44 SNENSTKILLVADPQILGNWPKK----------------------FLVSWLDKYG-N---DWYLRRSFDMSQWRLKPDVV 97 (410)
T ss_pred CCCCceEEEEecCchhcCCCCCc----------------------cccchHHhhh-h---HHHHHHHHHHHHhccCCCEE
Confidence 44788999999999995433100 1223333332 1 23455566655544489999
Q ss_pred EEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhC---CCCEEEecCCCCCC
Q psy15259 142 YMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLG---DIPVIPIIGNHETH 190 (257)
Q Consensus 142 i~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~---~~pv~~~lGNHD~~ 190 (257)
+|.||+++.+-|....|...+ +++|++.|+ ++++..++||||.-
T Consensus 98 ffLGDLfDeG~~~~~eEf~~~-----~~RfkkIf~~k~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 98 FFLGDLFDEGQWAGDEEFKKR-----YERFKKIFGRKGNIKVIYIAGNHDIG 144 (410)
T ss_pred EEeccccccCccCChHHHHHH-----HHHHHHhhCCCCCCeeEEeCCccccc
Confidence 999999998887655444333 334566664 68999999999984
No 59
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.52 E-value=0.00024 Score=62.28 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHh-c--------CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKK-H--------KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~-~--------~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++++|+.+.- . .+.|.+++.||+++.+.. ..+.++.+.++.. ...++.+.||||..
T Consensus 14 ~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~------s~evl~~l~~l~~----~~~~~~v~GNHE~~ 80 (234)
T cd07423 14 DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD------SPEVLRLVMSMVA----AGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC------HHHHHHHHHHHhh----CCcEEEEECCcHHH
Confidence 467778888742 1 136899999999997753 2233333332211 23589999999974
No 60
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.48 E-value=0.00043 Score=58.34 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 128 ALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 128 ~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
+++.+++ .++|.||..||++. ..+.+.+++. ..|++.+.||||..
T Consensus 21 ~~~~~~~-~~~d~iih~GDi~~---------------~~~~~~l~~~--~~~~~~V~GN~D~~ 65 (178)
T cd07394 21 FKKLLVP-GKIQHVLCTGNLCS---------------KETYDYLKTI--APDVHIVRGDFDEN 65 (178)
T ss_pred HHHHhcc-CCCCEEEECCCCCC---------------HHHHHHHHhh--CCceEEEECCCCcc
Confidence 4444443 57999999999975 1223334432 24799999999954
No 61
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=97.43 E-value=0.00041 Score=66.35 Aligned_cols=69 Identities=14% Similarity=0.280 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHh---cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHH--------------------Hh----
Q psy15259 123 DVIRSALEQIKK---HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFRE--------------------YL---- 175 (257)
Q Consensus 123 ~l~~s~l~~i~~---~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~--------------------~~---- 175 (257)
..++++++.|+. ...+||+|-|||..+.. +...++...+.|.- -|
T Consensus 82 ~v~~AaVqtvNal~~~~p~df~is~GD~~nn~--------~~nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~G 153 (492)
T TIGR03768 82 QVLDAAVQTVNDLHKRDRFDFGISLGDACNST--------QYNELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAG 153 (492)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEeccccccch--------hHHHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccc
Confidence 567888888887 34689999999998743 22234444444421 01
Q ss_pred --CCCCEEEecCCCCCCCCCCCCCCC
Q psy15259 176 --GDIPVIPIIGNHETHPVNVFSPYF 199 (257)
Q Consensus 176 --~~~pv~~~lGNHD~~P~n~f~~~~ 199 (257)
..+|.|-++||||-+....|+...
T Consensus 154 L~~~iPWY~v~GNHD~~~~G~~p~~~ 179 (492)
T TIGR03768 154 LDKSIPWYQVLGNHDHFWIGSFPVDG 179 (492)
T ss_pred cCCCCceEEeecCCccccccccCCCC
Confidence 138999999999999988888754
No 62
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.42 E-value=0.00028 Score=61.63 Aligned_cols=64 Identities=22% Similarity=0.397 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCc----ccc--------cCHH-------HHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHA----IWE--------TSRA-------KNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~----~~~--------~s~~-------~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
++++++++.|.+ ..+|.|+++||++.-. .|+ ..++ ...+++..+++.|.. -++|++.+
T Consensus 19 e~l~~l~~~~~e-~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L~~--~~~p~~~v 95 (255)
T PF14582_consen 19 ELLERLVEVIPE-KGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRILGE--LGVPVFVV 95 (255)
T ss_dssp HHHHHHHHHHHH-HT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHHHC--C-SEEEEE
T ss_pred HHHHHHHhhccc-cCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHHHh--cCCcEEEe
Confidence 678888888887 4899999999998754 232 0111 122334455555443 26999999
Q ss_pred cCCCCC
Q psy15259 184 IGNHET 189 (257)
Q Consensus 184 lGNHD~ 189 (257)
+||||.
T Consensus 96 PG~~Da 101 (255)
T PF14582_consen 96 PGNMDA 101 (255)
T ss_dssp --TTS-
T ss_pred cCCCCc
Confidence 999995
No 63
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.40 E-value=0.00033 Score=60.77 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++++|+.|...++.|-+++.||+++-+... . .+.+.+++ ..++.+.||||..
T Consensus 30 ~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s------~----~vl~~l~~----~~~~~v~GNHE~~ 83 (218)
T PRK11439 30 EQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS------L----RCLQLLEE----HWVRAVRGNHEQM 83 (218)
T ss_pred HHHHHHHHhcCCCcccCEEEEcCcccCCCcCH------H----HHHHHHHc----CCceEeeCchHHH
Confidence 57888888886434689999999999977532 1 23334443 2367899999953
No 64
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=97.38 E-value=0.00035 Score=65.83 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
...+...|..+.+..++||||-+||++..++-...-+.-.+..+.++..-...+ ++|.|++|||||..
T Consensus 42 Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L-~~Pwy~vLGNHDy~ 109 (394)
T PTZ00422 42 QKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDM-QIPFFTVLGQADWD 109 (394)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhh-CCCeEEeCCccccc
Confidence 356666666666645899999999998766654322222334555554432223 58999999999963
No 65
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.38 E-value=0.00061 Score=61.00 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCccEEEE-cCCCCcCcccccCHHH-HHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYM-TGDLVAHAIWETSRAK-NIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~-TGD~v~H~~~~~s~~~-~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
...+.++++.+++ ..++.+++ +||++....+..-... ....-+.+.+.|+.. +. -+.++||||+
T Consensus 29 ~~~l~~~i~~~r~-~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~~--g~-d~~~lGNHe~ 94 (277)
T cd07410 29 LARVATLIKKARA-ENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNAL--GY-DAGTLGNHEF 94 (277)
T ss_pred HHHHHHHHHHHHh-cCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHhc--CC-CEEeecccCc
Confidence 3567888888886 35777777 9999986643210000 000012244555543 22 4778999996
No 66
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.38 E-value=0.00059 Score=59.38 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCC--cCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLV--AHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v--~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
.+.+.+..++. .++|+++++||++ .-+. .+...+.. ..+.+++. ++||++++||-|.
T Consensus 18 ~~~k~~~~~~~-~~~D~lviaGDlt~~~~~~----~~~~~~~~--~~e~l~~~--~~~v~avpGNcD~ 76 (226)
T COG2129 18 SLKKLLNAAAD-IRADLLVIAGDLTYFHFGP----KEVAEELN--KLEALKEL--GIPVLAVPGNCDP 76 (226)
T ss_pred HHHHHHHHHhh-ccCCEEEEecceehhhcCc----hHHHHhhh--HHHHHHhc--CCeEEEEcCCCCh
Confidence 34555555544 4799999999999 3222 11111111 13334433 7999999999995
No 67
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.35 E-value=0.00047 Score=61.61 Aligned_cols=56 Identities=23% Similarity=0.407 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++++|+.|...+..|.++++||+|+-+..+ .+ +.+.+++. +..++.++||||..
T Consensus 12 ~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s------~e----vl~~l~~l--~~~v~~VlGNHD~~ 67 (257)
T cd07422 12 DELQRLLEKINFDPAKDRLWLVGDLVNRGPDS------LE----TLRFVKSL--GDSAKTVLGNHDLH 67 (257)
T ss_pred HHHHHHHHhcCCCCCCCEEEEecCcCCCCcCH------HH----HHHHHHhc--CCCeEEEcCCchHH
Confidence 56778888876434679999999999977531 22 33344433 24689999999975
No 68
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.34 E-value=0.00051 Score=60.74 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhc--------CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKH--------KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~--------~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..++.+|+.+.-. +.-|.+|+.||+++.+.. ..+.++.+.+++ ....++.+.||||..
T Consensus 14 ~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~------S~~vl~~~~~~~----~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 14 QEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH------SLRMIEIVWELV----EKKAAYYVPGNHCNK 79 (245)
T ss_pred HHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcC------hHHHHHHHHHHh----hCCCEEEEeCccHHH
Confidence 4677777776421 235899999999998753 223444444332 234799999999954
No 69
>KOG2310|consensus
Probab=97.30 E-value=0.0014 Score=63.39 Aligned_cols=88 Identities=31% Similarity=0.495 Sum_probs=58.6
Q ss_pred CCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEE
Q psy15259 64 GDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYM 143 (257)
Q Consensus 64 ~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~ 143 (257)
..++|||..||.|+. |.+... .++-| .+.+++..|+-.++ .+.|||+.
T Consensus 11 entirILVaTD~HlG--Y~EkD~----------------------------vrg~D-Sf~tFeEIl~iA~e-~~VDmiLl 58 (646)
T KOG2310|consen 11 ENTIRILVATDNHLG--YGEKDA----------------------------VRGDD-SFVTFEEILEIAQE-NDVDMILL 58 (646)
T ss_pred ccceEEEEeecCccc--cccCCc----------------------------ccccc-hHHHHHHHHHHHHh-cCCcEEEe
Confidence 578999999999995 322110 01223 46788888885554 68999999
Q ss_pred cCCCCcCcccccCHHHHHHHHHHHHHHHHHH-----------------------hC-----------CCCEEEecCCCCC
Q psy15259 144 TGDLVAHAIWETSRAKNIEVMKVVAELFREY-----------------------LG-----------DIPVIPIIGNHET 189 (257)
Q Consensus 144 TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~-----------------------~~-----------~~pv~~~lGNHD~ 189 (257)
.||++..... |+. ++....++|+.+ |+ .+|||.+-||||-
T Consensus 59 GGDLFHeNkP--Sr~----~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDD 132 (646)
T KOG2310|consen 59 GGDLFHENKP--SRK----TLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDD 132 (646)
T ss_pred cCcccccCCc--cHH----HHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCC
Confidence 9999964433 333 344445555542 11 3699999999995
No 70
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.27 E-value=0.00065 Score=59.05 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..++++++.+.-.++.|.+++.||+++.+... . .+.+.+++ ..++.+.||||.
T Consensus 28 ~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~------~----~~l~~l~~----~~~~~v~GNHE~ 80 (218)
T PRK09968 28 QLLQSRLHQLSFCPETDLLISVGDNIDRGPES------L----NVLRLLNQ----PWFISVKGNHEA 80 (218)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH------H----HHHHHHhh----CCcEEEECchHH
Confidence 46777887775234789999999999987531 1 22334443 247899999996
No 71
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.16 E-value=0.0013 Score=55.31 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..++|+||..||.+.+... ..+...+ ..+++.+-||.|...
T Consensus 26 ~~~~d~vih~GD~~~~~~~---------------~~l~~~~-~~~i~~V~GN~D~~~ 66 (172)
T COG0622 26 LEKVDAVIHAGDSTSPFTL---------------DALEGGL-AAKLIAVRGNCDGEV 66 (172)
T ss_pred hcCCCEEEECCCcCCccch---------------HHhhccc-ccceEEEEccCCCcc
Confidence 3689999999999987642 1111112 378999999999854
No 72
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.15 E-value=0.0013 Score=56.40 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHh----------------CCCCEEEecCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL----------------GDIPVIPIIGNH 187 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~----------------~~~pv~~~lGNH 187 (257)
-+...++.+...-+||.|+|.||+++-. |....| =.+..++..+.+...- .+++++.++|||
T Consensus 31 YL~~~~~~~~~~l~Pd~V~fLGDLfd~~-w~~D~e-f~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNH 108 (193)
T cd08164 31 FLGHIVSMMQFWLKPDAVVVLGDLFSSQ-WIDDEE-FAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNH 108 (193)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccCCC-cccHHH-HHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcc
Confidence 3455556665544899999999999864 643222 2223333333331110 148999999999
Q ss_pred CCCC
Q psy15259 188 ETHP 191 (257)
Q Consensus 188 D~~P 191 (257)
|.-.
T Consensus 109 DIG~ 112 (193)
T cd08164 109 DVGY 112 (193)
T ss_pred cCCC
Confidence 9843
No 73
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.13 E-value=0.0016 Score=59.15 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhc-----CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 123 DVIRSALEQIKKH-----KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 123 ~l~~s~l~~i~~~-----~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
.+++.+++.|.+. ...+.+||.||+++.+.. ..+.+..+.. ++...+...++.+.||||..-
T Consensus 15 d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPd------S~eVld~L~~-l~~~~~~~~vv~LrGNHE~~~ 81 (304)
T cd07421 15 SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPE------TRKVIDFLIS-LPEKHPKQRHVFLCGNHDFAF 81 (304)
T ss_pred HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCC------HHHHHHHHHH-hhhcccccceEEEecCChHHH
Confidence 5788888888641 236789999999998753 2233333333 222233335788999999643
No 74
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0015 Score=62.51 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh----cCC
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK----HKN 137 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~----~~~ 137 (257)
.+.+.+++++|||+|.. |.. |+ ...++++++.++. ...
T Consensus 221 ~~~e~v~v~~isDih~G------Sk~------------------------F~--------~~~f~~fi~wl~g~~~~a~~ 262 (481)
T COG1311 221 TGDERVYVALISDIHRG------SKE------------------------FL--------EDEFEKFIDWLNGPGDLASR 262 (481)
T ss_pred CCCcceEEEEEeeeecc------cHH------------------------HH--------HHHHHHHHHHhcCCcccccc
Confidence 55678999999999994 211 11 1356666776654 235
Q ss_pred ccEEEEcCCCCcCc-cc-ccCHH----HHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 138 ISMVYMTGDLVAHA-IW-ETSRA----KNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 138 ~dfii~TGD~v~H~-~~-~~s~~----~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..+++.+||+|+.- .. -+..+ ...+..+++.+.|...-..+.|+.++||||...
T Consensus 263 vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 263 VKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred eEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCCCCceEEEecCCCCccc
Confidence 69999999999943 22 12112 222334444444444334566999999999865
No 75
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.07 E-value=0.0016 Score=57.81 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+.++++++++. +.++++.+||.+....... ...-+.+.+.|... +.-+ .++||||+
T Consensus 24 ~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~-----~~~g~~~~~~ln~~--g~d~-~~~GNHef 81 (257)
T cd07408 24 AKLATYKKEMNKL-DNDLLVDAGDAIQGLPISD-----LDKGETIIKIMNAV--GYDA-VTPGNHEF 81 (257)
T ss_pred HHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhh-----hcCCcHHHHHHHhc--CCcE-Eccccccc
Confidence 5677888888764 6789999999998654321 11112334455542 3344 67899996
No 76
>KOG1378|consensus
Probab=97.00 E-value=0.0029 Score=60.31 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCC
Q psy15259 107 DRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGN 186 (257)
Q Consensus 107 ~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGN 186 (257)
..++-+|+. +|..+. .++++.+.+.+++|+||+.||+.--+.... .+-+...++.+-+.+ .+|...+.||
T Consensus 148 ~~~~i~GDl-G~~~~~---~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n---~~wD~f~r~vEp~As---~vPymv~~GN 217 (452)
T KOG1378|consen 148 TRAAIFGDM-GCTEPY---TSTLRNQEENLKPDAVLHIGDLSYAMGYSN---WQWDEFGRQVEPIAS---YVPYMVCSGN 217 (452)
T ss_pred eeEEEEccc-cccccc---cchHhHHhcccCCcEEEEecchhhcCCCCc---cchHHHHhhhhhhhc---cCceEEeccc
Confidence 345667877 455442 244555555447999999999875443221 222344455555554 4889999999
Q ss_pred CCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhccCChhHHhhhhc-CceEEEeecCCeEEEEEcCcccc
Q psy15259 187 HETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLK-GGYYSFLTEKNLRIIVLNTNVYQ 254 (257)
Q Consensus 187 HD~~P~n~f~~~~~~~~~~~~w~~~~l~~~w~~wl~~~~~~~~~~-~GyYs~~~~~glriIsLNtn~~y 254 (257)
||.-..++-+.... ...|. .+.... -.. .=|||+.. .++++|+|+|-.+|
T Consensus 218 HE~d~~~~~~F~~y----~~Rf~-----------mP~~~s--~s~~~l~YSfd~-G~vhfv~lsse~~~ 268 (452)
T KOG1378|consen 218 HEIDWPPQPCFVPY----SARFN-----------MPGNSS--ESDSNLYYSFDV-GGVHFVVLSTETYY 268 (452)
T ss_pred ccccCCCccccccc----ceeec-----------cCCCcC--CCCCceeEEEee-ccEEEEEEeccccc
Confidence 99854332111111 11110 000000 000 13899984 68999999999886
No 77
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.95 E-value=0.0023 Score=57.76 Aligned_cols=57 Identities=30% Similarity=0.489 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..++.+|+.|.-.+..|-++++||+|+-+..+ .+. .+.+++. + ..+..++||||..-
T Consensus 14 daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s------lev----L~~l~~l-~-~~~~~VlGNHD~~l 70 (279)
T TIGR00668 14 DELQALLERVEFDPGQDTLWLTGDLVARGPGS------LEV----LRYVKSL-G-DAVRLVLGNHDLHL 70 (279)
T ss_pred HHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH------HHH----HHHHHhc-C-CCeEEEEChhHHHH
Confidence 56888888886334679999999999977632 222 3334432 2 24678999999643
No 78
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=96.92 E-value=0.0033 Score=55.95 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCccEE-EEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMV-YMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfi-i~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+.++++++++...+|.+ +.+||++...... ....-..+.+.|++ .++..+.||||+
T Consensus 36 ~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~-----~~~~g~~~~~~l~~----~g~da~~GNHef 94 (264)
T cd07411 36 AHIATLIKRIRAERNPNTLLLDGGDTWQGSGEA-----LYTRGQAMVDALNA----LGVDAMVGHWEF 94 (264)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCccCCChHH-----hhcCChhHHHHHHh----hCCeEEeccccc
Confidence 6788889988872268877 4699999876432 11111234455554 334444499996
No 79
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=96.90 E-value=0.0094 Score=51.43 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=65.6
Q ss_pred CCccEEEEcCCCCcCccc------------------ccCHHHHHHHHHH--HHHHHHHHhCCCCEEEecCCCCCCCCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIW------------------ETSRAKNIEVMKV--VAELFREYLGDIPVIPIIGNHETHPVNVF 195 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~------------------~~s~~~~~~~~~~--~~~~l~~~~~~~pv~~~lGNHD~~P~n~f 195 (257)
.++||+|++||.+--+.- ..+.+.-.+.... ....+++.+..+|++.+.-+||+...+..
T Consensus 28 ~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~~n~~~ 107 (228)
T cd07389 28 EDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGDNWGG 107 (228)
T ss_pred cCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHhhcCCEEEecccccccccccc
Confidence 589999999998876631 1122211111111 12334555567999999999999754433
Q ss_pred CCCCCCCCCChhhHHHHHHHHHhccCChhHHhhh---hcCceEEEeecCCeEEEEEcCcc
Q psy15259 196 SPYFVQGPTSTSWVYESFIQYWGWSLPESARQTF---LKGGYYSFLTEKNLRIIVLNTNV 252 (257)
Q Consensus 196 ~~~~~~~~~~~~w~~~~l~~~w~~wl~~~~~~~~---~~~GyYs~~~~~glriIsLNtn~ 252 (257)
............-..+...+.|..|.+....... ..+.|++....+.+.||.|+|-.
T Consensus 108 ~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~~~lD~R~ 167 (228)
T cd07389 108 DGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDLILLDTRT 167 (228)
T ss_pred ccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceEEEEeccc
Confidence 2221111112223344444556555554333222 24566777766667999999843
No 80
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.86 E-value=0.0021 Score=55.18 Aligned_cols=61 Identities=26% Similarity=0.293 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
..+..+++.+.. ...|.+|+.||+++.+... .+.+..+.. ++.. ..+++.+.||||..-.+
T Consensus 11 ~~l~~~l~~~~~-~~~d~li~lGD~vdrg~~~------~~~l~~l~~-~~~~--~~~~~~l~GNHe~~~~~ 71 (225)
T cd00144 11 DDLLRLLEKIGF-PPNDKLIFLGDYVDRGPDS------VEVIDLLLA-LKIL--PDNVILLRGNHEDMLLN 71 (225)
T ss_pred HHHHHHHHHhCC-CCCCEEEEECCEeCCCCCc------HHHHHHHHH-hcCC--CCcEEEEccCchhhhhh
Confidence 456667776654 4689999999999876431 123333322 1111 35799999999986544
No 81
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.68 E-value=0.014 Score=52.38 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHh--cCCccEEEEcCCCCcCcccccCHHHHHH---HHHHHHHHHHHHhC-----CCCEEEecCCCCCCCC
Q psy15259 123 DVIRSALEQIKK--HKNISMVYMTGDLVAHAIWETSRAKNIE---VMKVVAELFREYLG-----DIPVIPIIGNHETHPV 192 (257)
Q Consensus 123 ~l~~s~l~~i~~--~~~~dfii~TGD~v~H~~~~~s~~~~~~---~~~~~~~~l~~~~~-----~~pv~~~lGNHD~~P~ 192 (257)
..+.+.++.+.+ ..++|++|..||+.. .|..+...... ..+.+ ..+.+++. .+|+|.+.||||..
T Consensus 12 ~~~~~~~~~~~~~~~~~~D~lI~~GDf~~--~~~~~d~~~~~~p~k~~~~-~~f~~~~~g~~~~p~~t~fi~GNHE~~-- 86 (262)
T cd00844 12 DKIYETLEKIEKKEGTKVDLLICCGDFQA--VRNEADLKCMAVPPKYRKM-GDFYKYYSGEKKAPILTIFIGGNHEAS-- 86 (262)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCCC--cCCcchhhhhccchhhhhh-hhHHHHhcCCccCCeeEEEECCCCCCH--
Confidence 344444445443 357999999999954 33322111110 00111 12222322 35679999999952
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHH-hccCChhHHhhhhcCceEEEeecCCeEEEEEcCc
Q psy15259 193 NVFSPYFVQGPTSTSWVYESFIQYW-GWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTN 251 (257)
Q Consensus 193 n~f~~~~~~~~~~~~w~~~~l~~~w-~~wl~~~~~~~~~~~GyYs~~~~~glriIsLNtn 251 (257)
+.+.+++ ..|+..+. --+.++|.+.+ .||||..|...
T Consensus 87 ------------------~~l~~l~~gg~v~~Ni-~~Lg~~~v~~~---~GlrIaGLsG~ 124 (262)
T cd00844 87 ------------------NYLWELPYGGWVAPNI-YYLGYAGVVNF---GGLRIAGLSGI 124 (262)
T ss_pred ------------------HHHHhhcCCCeecCcE-EEecCCCEEEE---CCeEEEEeccc
Confidence 1122333 23553211 11224455544 79999988764
No 82
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.61 E-value=0.0037 Score=56.54 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=26.1
Q ss_pred Ccc-EEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 137 NIS-MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 137 ~~d-fii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
.++ +++-.||.+....+..-.... -+.+.+.|... + -=+.++||||+
T Consensus 49 ~~~~Llld~GD~~qGs~~~~~~~~~---g~~~~~~mN~m-g--yDa~tlGNHEF 96 (282)
T cd07407 49 GVDLLLVDTGDLHDGNGLSDASPPP---GSYSNPIFRMM-P--YDLLTIGNHEL 96 (282)
T ss_pred CCCEEEEeCCCccCCeeceeeecCC---ChHHHHHHHhc-C--CcEEeeccccc
Confidence 344 667799999877654211000 12223334332 1 23789999998
No 83
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.48 E-value=0.0069 Score=52.74 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-------CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 123 DVIRSALEQIKKH-------KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 123 ~l~~s~l~~i~~~-------~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.+++.+|+.|... ...|.+|+.||+++-+..+ .+.++.+.++. ..-.++.+.||||..
T Consensus 12 ~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S------~~vl~~l~~l~----~~~~~~~l~GNHE~~ 76 (222)
T cd07413 12 EKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEI------RELLEIVKSMV----DAGHALAVMGNHEFN 76 (222)
T ss_pred HHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCH------HHHHHHHHHhh----cCCCEEEEEccCcHH
Confidence 6788888887531 1468999999999987632 23333333322 123689999999964
No 84
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.34 E-value=0.024 Score=46.91 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 127 SALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 127 s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
..+....+ .+.=|.+.+.||+..|... +..+..|-+.+++ -+..++||||..
T Consensus 34 vil~N~nntv~p~D~lwhLGDl~~~~n~-----------~~~a~~IlerLnG-rkhlv~GNhDk~ 86 (186)
T COG4186 34 VILSNWNNTVGPDDVLWHLGDLSSGANR-----------ERAAGLILERLNG-RKHLVPGNHDKC 86 (186)
T ss_pred HHHHhHHhcCCccceEEEecccccccch-----------hhHHHHHHHHcCC-cEEEeeCCCCCC
Confidence 34444444 3345899999999987642 2334455667764 468899999973
No 85
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.29 E-value=0.0094 Score=52.43 Aligned_cols=63 Identities=30% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
..+...++.+-+..+|+-+|+.||+- |+.-...+.+ ...+..+.+.+.. .-|..+-||||..-
T Consensus 49 ~~~~~~l~~ii~~~~p~~lIilGD~K-H~~~~~~~~e-~~~~~~f~~~~~~----~evi~i~GNHD~~i 111 (235)
T COG1407 49 DRILKRLDRIIERYGPKRLIILGDLK-HEFGKSLRQE-KEEVREFLELLDE----REVIIIRGNHDNGI 111 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccc-cccCcccccc-HHHHHHHHHHhcc----CcEEEEeccCCCcc
Confidence 34455555444445899999999987 5543322221 1223344444433 24999999999853
No 86
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=96.20 E-value=0.018 Score=52.05 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
...+...++.+++...-.+++..||++.......+ ...-+.+.+.|++. +.- +.++||||+
T Consensus 27 ~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~----~~~g~~~~~~~n~~--g~D-a~t~GNHef 87 (288)
T cd07412 27 AAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESA----LLQDEPTIEALNAM--GVD-ASAVGNHEF 87 (288)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCcccccccchhh----cccCCcHHHHHHhh--CCe-eeeeccccc
Confidence 36788888888873233599999999965442110 00002334455543 232 588899997
No 87
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.17 E-value=0.0053 Score=52.43 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCccccc-------CHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWET-------SRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNV 194 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~-------s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~ 194 (257)
+..++.+++.+.+..+++.+|+.|+.++...... ........+..+.+.+.+..+.++|..++|+||....+.
T Consensus 16 ~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~~~~ 95 (209)
T PF04042_consen 16 LEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPNDPTSSPV 95 (209)
T ss_dssp HHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTCTT-S-S
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCccccccCC
Confidence 4667777766652257999999999999542211 011222233444444444456789999999999876655
Q ss_pred CCCCC
Q psy15259 195 FSPYF 199 (257)
Q Consensus 195 f~~~~ 199 (257)
++...
T Consensus 96 lPq~p 100 (209)
T PF04042_consen 96 LPQPP 100 (209)
T ss_dssp CSB--
T ss_pred CCCCC
Confidence 55544
No 88
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.96 E-value=0.014 Score=46.34 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=25.8
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..++|.++++||+.. .. + +.+.+ +.+.|++.+.||||.
T Consensus 20 ~~~~d~ii~~GD~~~---------~~---~----~~~~~-~~~~~~~~V~GN~D~ 57 (129)
T cd07403 20 LEGVDLILSAGDLPK---------EY---L----EYLVT-MLNVPVYYVHGNHDV 57 (129)
T ss_pred CCCCCEEEECCCCCh---------HH---H----HHHHH-HcCCCEEEEeCCCcc
Confidence 358999999999742 11 1 12222 235789999999994
No 89
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.037 Score=54.03 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred CCCceeEEEecccCCCCC-CCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEE
Q psy15259 63 SGDEISIIQLTDIHYDPK-YLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMV 141 (257)
Q Consensus 63 ~~~~~kvlhlSDiH~D~~-Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfi 141 (257)
..-.++|||.+|+|--.. |..... ..+ .|. +..+.+.++++++..+..++
T Consensus 23 ~~~~l~ilhtnD~H~~l~~~~~~~~---------------------~~~-~~g-------~~~~~~~v~~~ra~~~~~ll 73 (517)
T COG0737 23 ETVKLTILHTNDLHGHLEPYDYDDD---------------------GDT-DGG-------LARIATLVKQLRAENKNVLL 73 (517)
T ss_pred CceeEEEEEeccccccceecccccc---------------------Ccc-ccc-------HHHHHHHHHHHHhhcCCeEE
Confidence 346799999999998665 222211 111 222 35777888888874356789
Q ss_pred EEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 142 YMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 142 i~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
|=+||++........ .. .-+...+.|...- .=+.++||||+.
T Consensus 74 ld~GD~~~G~~l~~~-~~---~g~~~~~~mN~m~---yDa~tiGNHEFd 115 (517)
T COG0737 74 LDAGDLIQGSPLSDY-LT---KGEPTVDLLNALG---YDAMTLGNHEFD 115 (517)
T ss_pred EeCCcccCCcccccc-cc---CCChHHHHHhhcC---CcEEeecccccc
Confidence 999999987443221 01 1112233333221 227899999983
No 90
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.87 E-value=0.02 Score=61.25 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCccEEEE-cCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYM-TGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~-TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+...++.+++ .+++.+++ +||++....... ...-+.+.+.|++. + .-+.++||||+
T Consensus 677 ~r~~~~i~~~r~-~~~~~l~ld~GD~~~gs~~~~-----~~~g~~~~~~ln~l--g-~d~~~~GNHEf 735 (1163)
T PRK09419 677 AKRVTKIKEVKE-ENPNTILVDAGDVYQGSLYSN-----LLKGLPVLKMMKEM--G-YDASTFGNHEF 735 (1163)
T ss_pred HHHHHHHHHHHh-hCCCeEEEecCCCCCCcchhh-----hcCChHHHHHHhCc--C-CCEEEeccccc
Confidence 456778888876 35777766 999997664311 00112334445442 1 23669999997
No 91
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=95.82 E-value=0.029 Score=50.11 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=37.8
Q ss_pred CccEEEEcCCCCcCcccccC------------HHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 137 NISMVYMTGDLVAHAIWETS------------RAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 137 ~~dfii~TGD~v~H~~~~~s------------~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
++..+|+.||+++....... .....+.++.+-..|.+.-..+||..++||||...
T Consensus 42 ~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~ 108 (257)
T cd07387 42 SIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPAN 108 (257)
T ss_pred ceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCccc
Confidence 56789999999986532110 11234456666666666656899999999999753
No 92
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=95.53 E-value=0.047 Score=53.88 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccc-cCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWE-TSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~-~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
...+..+++.+++...--+++-.||.+....+. ..+. +...+.|.. + .--..++||||+
T Consensus 34 ~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g------~~~i~~~N~-~--g~Da~~lGNHEF 93 (550)
T TIGR01530 34 FAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGG------RADAALMNA-A--GFDFFTLGNHEF 93 (550)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCC------HHHHHHHhc-c--CCCEEEeccccc
Confidence 467788888888722346889999999766543 1111 112333432 2 234789999997
No 93
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=95.51 E-value=0.058 Score=48.53 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCcc-EEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNIS-MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~d-fii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+.+.++.+++ ..++ +++-+||.+....... ...-+.+.+.|++. +.. ..++||||+
T Consensus 35 ar~~~~v~~~r~-~~~~~l~ld~GD~~~gs~~~~-----~~~g~~~~~~ln~~--g~D-~~~lGNHef 93 (281)
T cd07409 35 ARVATLVKELRA-ENPNVLFLNAGDAFQGTLWYT-----LYKGNADAEFMNLL--GYD-AMTLGNHEF 93 (281)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCCCCCCCcchhh-----hcCChHHHHHHHhc--CCC-EEEeccccc
Confidence 567788888876 3455 5556999987654321 00112334445543 233 567899997
No 94
>KOG2679|consensus
Probab=95.36 E-value=0.034 Score=49.95 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCCcCc-ccc-cCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLVAHA-IWE-TSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHP 191 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v~H~-~~~-~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P 191 (257)
.+..-+..|.+.-++||||=|||++--. +-. ..+.. +++.+.++.. ..+ ..|-|.++||||...
T Consensus 62 ~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~F-q~sF~nIYT~--pSL-QkpWy~vlGNHDyrG 127 (336)
T KOG2679|consen 62 QVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRF-QDSFENIYTA--PSL-QKPWYSVLGNHDYRG 127 (336)
T ss_pred HHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhH-HhhhhhcccC--ccc-ccchhhhccCccccC
Confidence 4444455565544899999999987533 211 11111 1222333221 011 469999999999753
No 95
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=94.58 E-value=0.078 Score=48.65 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhc----CCccEEEEcCCCCcCcccccCHH---HHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKH----KNISMVYMTGDLVAHAIWETSRA---KNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~----~~~dfii~TGD~v~H~~~~~s~~---~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+..+++.+++. .+--+++-.||.+....+..... .....-+.+.+.|.. + +. =..++||||+
T Consensus 20 ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~-~-g~-Da~tlGNHEF 90 (313)
T cd08162 20 PNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNA-L-GV-QAIALGNHEF 90 (313)
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhc-c-CC-cEEecccccc
Confidence 3455566666541 33468999999997665421000 000001122333432 2 12 2678999996
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.49 E-value=0.12 Score=53.15 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCccc
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIW 153 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~ 153 (257)
+..+.+.++++++...--+++-.||++....+
T Consensus 68 lar~AtlI~~~R~e~~ntlllD~GD~iqGspl 99 (780)
T PRK09418 68 LVQTATLVNKAREEAKNSVLFDDGDALQGTPL 99 (780)
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCCCCCCchH
Confidence 35577788888762234688999999987765
No 97
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.47 E-value=0.11 Score=53.52 Aligned_cols=64 Identities=19% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHH---H-HHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKN---I-EVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~---~-~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+...++++++...--+++-.||++....+..-.... . ....-+.+.|... + -=..++||||+
T Consensus 145 aRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~amN~L-G--yDA~tLGNHEF 212 (814)
T PRK11907 145 AKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYAALEAL-G--FDAGTLGNHEF 212 (814)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHHHHhcc-C--CCEEEechhhc
Confidence 55667888887622336889999999877653211000 0 0001234444432 1 23688999997
No 98
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=94.46 E-value=0.14 Score=46.07 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
.+..+++.+.. ...+-+++.||.++-+... .+.+..+. .++-.+| .-|+.+.||||....+
T Consensus 42 ~l~~ll~~~~~-~~~~~~vfLGD~VDrG~~s------~e~l~~l~-~lk~~~p-~~v~llrGNHE~~~~~ 102 (271)
T smart00156 42 DLLRLFDLNGP-PPDTNYVFLGDYVDRGPFS------IEVILLLF-ALKILYP-NRVVLLRGNHESRSMN 102 (271)
T ss_pred HHHHHHHHcCC-CCCceEEEeCCccCCCCCh------HHHHHHHH-HHHhcCC-CCEEEEeccccHHHHH
Confidence 34445554443 4568899999999977532 23333333 3344455 4699999999986543
No 99
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=94.45 E-value=0.17 Score=45.59 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhc----CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKH----KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~----~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
...+.+.++++++. ...-+++-+||.+....... ...-+.+.+.|... +. =..++||||+
T Consensus 23 ~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~-----~~~g~~~~~~~n~~--g~-Da~~~GNHEf 86 (285)
T cd07405 23 LAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESD-----LQDAEPDFRGMNLV--GY-DAMAVGNHEF 86 (285)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHH-----hcCcchHHHHHHhh--CC-cEEeeccccc
Confidence 45677788888751 23468899999985443211 11112233444432 23 2557899996
No 100
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.32 E-value=0.095 Score=56.18 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCccEEEE-cCCCCcCccc
Q psy15259 122 LDVIRSALEQIKKHKNISMVYM-TGDLVAHAIW 153 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~-TGD~v~H~~~ 153 (257)
+..+..+++.+++ ..++.+++ +||++....+
T Consensus 70 lar~at~i~~~r~-~~~n~llld~GD~~qGs~l 101 (1163)
T PRK09419 70 LAQTATLIKKARK-ENPNTLLVDNGDLIQGNPL 101 (1163)
T ss_pred HHHHHHHHHHHHH-hCCCeEEEeCCCccCCChh
Confidence 4677888888886 24555554 9999987653
No 101
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=93.62 E-value=0.28 Score=44.89 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
+..+++.+.. +..+-++|.||.|+-+.+. .+.+..+. .++-.+| .-|+.+.||||..
T Consensus 58 L~~l~~~~g~-~~~~~ylFLGDyVDRG~~s------~Evi~lL~-~lki~~p-~~v~lLRGNHE~~ 114 (305)
T cd07416 58 LLKLFEVGGS-PANTRYLFLGDYVDRGYFS------IECVLYLW-ALKILYP-KTLFLLRGNHECR 114 (305)
T ss_pred HHHHHHhcCC-CCCceEEEECCccCCCCCh------HHHHHHHH-HHHhhcC-CCEEEEeCCCcHH
Confidence 4445554432 3458899999999977542 23333333 2343455 4699999999984
No 102
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=93.46 E-value=0.2 Score=45.49 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
+..+++.... +.-+-.||.||.++-+.. ..+.+..+. .++-.+| ..|+.+.||||....+
T Consensus 57 L~~ll~~~~~-~~~~~~lfLGDyVDRG~~------s~evl~ll~-~lk~~~p-~~v~llrGNHE~~~~~ 116 (285)
T cd07415 57 LLELFRVGGD-PPDTNYLFLGDYVDRGYY------SVETFLLLL-ALKVRYP-DRITLLRGNHESRQIT 116 (285)
T ss_pred HHHHHHHcCC-CCCCeEEEEeEECCCCcC------HHHHHHHHH-HHhhcCC-CcEEEEecccchHhhh
Confidence 3445544432 345778999999987653 123333333 3444455 4799999999985433
No 103
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.31 E-value=0.25 Score=46.59 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCc-cEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 124 VIRSALEQIKKHKNI-SMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 124 l~~s~l~~i~~~~~~-dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
.+..+++.+.- +.. +.+||.||.|+.+... .+.+..+. .++-.+| .-||.+.||||..-.+
T Consensus 80 dL~~ll~~~g~-~~~~~~ylFLGDyVDRGp~S------lEvl~lL~-~lki~~p-~~v~lLRGNHE~~~i~ 141 (377)
T cd07418 80 DVLFLLEDAGF-PDQNRFYVFNGDYVDRGAWG------LETFLLLL-SWKVLLP-DRVYLLRGNHESKFCT 141 (377)
T ss_pred HHHHHHHHhCC-CCCCceEEEeccccCCCCCh------HHHHHHHH-HHhhccC-CeEEEEeeecccccch
Confidence 34445554432 222 4689999999977532 23333333 2333445 4699999999985444
No 104
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=93.23 E-value=0.33 Score=48.81 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHH-H--HHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKN-I--EVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~-~--~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+..+.++++++++...--+++-.||++....+....... . ....-+.+.|... + -=..++||||+
T Consensus 31 lar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~mN~l--g-yDa~tlGNHEF 98 (626)
T TIGR01390 31 LTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKAMNLL--K-YDVGNLGNHEF 98 (626)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHHHhhc--C-ccEEecccccc
Confidence 356777888887622346888999999876553110000 0 0001233344332 1 23688999996
No 105
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=93.15 E-value=0.52 Score=47.58 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCcCccccc-CHHHHH--HHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWET-SRAKNI--EVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~-s~~~~~--~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+..+.+.++++++...--+++-.||++....... ...... ....-+.+.|... .-=..++||||+
T Consensus 54 lar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i~amN~l---gyDa~tlGNHEF 121 (649)
T PRK09420 54 LVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVYKAMNTL---DYDVGNLGNHEF 121 (649)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHHHHHHhc---CCcEEeccchhh
Confidence 3567788888876223468889999998665421 000000 0001234444432 123788999996
No 106
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=93.07 E-value=0.26 Score=45.53 Aligned_cols=47 Identities=28% Similarity=0.313 Sum_probs=31.7
Q ss_pred cEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 139 SMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 139 dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
+-.||.||.|+.+..+ .+.+..++. ++-.+| --||.+.||||..-.|
T Consensus 80 ~~~lFLGDyVDRG~~s------~Evl~ll~~-lk~~~p-~~v~llRGNHE~~~~~ 126 (321)
T cd07420 80 NPYVFNGDFVDRGKRS------IEILIILFA-FFLVYP-NEVHLNRGNHEDHIMN 126 (321)
T ss_pred ceEEEeccccCCCCCc------HHHHHHHHH-HhhcCC-CcEEEecCchhhhhhh
Confidence 6799999999988532 234444433 233455 4599999999986544
No 107
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=92.89 E-value=0.22 Score=45.82 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPV 192 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~ 192 (257)
+..+|+.+.-...-|-.+|.||.|+.+... .+.+..+. .++-.+| .-|+.+.||||..-.
T Consensus 75 L~~ll~~~g~~~~~~~ylFLGDyVDRG~~S------~Evl~ll~-~lki~~p-~~v~lLRGNHE~~~~ 134 (316)
T cd07417 75 LLNIFELNGLPSETNPYLFNGDFVDRGSFS------VEVILTLF-AFKLLYP-NHFHLNRGNHETDNM 134 (316)
T ss_pred HHHHHHhcCCCCccCeEEEEeeEecCCCCh------HHHHHHHH-HhhhccC-CceEEEeeccchHHH
Confidence 334554433212236799999999987542 23444333 2333345 458999999997443
No 108
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=92.61 E-value=0.32 Score=44.33 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
+..+++.... +..+-+||.||.++.+... .+.+..+. .++-.+| .-|+.+.||||....+
T Consensus 65 L~~l~~~~~~-~~~~~~lfLGDyVDRG~~s------~e~i~ll~-~lk~~~p-~~i~llrGNHE~~~~~ 124 (293)
T cd07414 65 LLRLFEYGGF-PPESNYLFLGDYVDRGKQS------LETICLLL-AYKIKYP-ENFFLLRGNHECASIN 124 (293)
T ss_pred HHHHHHhcCC-CCcceEEEEeeEecCCCCc------HHHHHHHH-HhhhhCC-CcEEEEecccchhhHh
Confidence 3445554432 3456788999999987532 12333332 2344455 3589999999986443
No 109
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=92.49 E-value=0.91 Score=43.53 Aligned_cols=137 Identities=17% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcc---ccc--C-----------HHHHHHHHHHHH------HHHHHH
Q psy15259 117 NCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAI---WET--S-----------RAKNIEVMKVVA------ELFREY 174 (257)
Q Consensus 117 ~CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~---~~~--s-----------~~~~~~~~~~~~------~~l~~~ 174 (257)
.|.-...-...++++|.+..++||+|+.||.+--+. |.. . ....++.++..+ ..+++.
T Consensus 112 SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~ 191 (453)
T PF09423_consen 112 SCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRL 191 (453)
T ss_dssp ----CCC---HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHH
T ss_pred CCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHH
Confidence 354432223567778876348999999999987663 210 0 011122222222 334444
Q ss_pred hCCCCEEEecCCCCCCCCCCCCCCCCCCCCChhhH--HHHHHHHHhccCChhHHh-hhhc-CceEEEeecCCeEEEEEcC
Q psy15259 175 LGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWV--YESFIQYWGWSLPESARQ-TFLK-GGYYSFLTEKNLRIIVLNT 250 (257)
Q Consensus 175 ~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~~w~--~~~l~~~w~~wl~~~~~~-~~~~-~GyYs~~~~~glriIsLNt 250 (257)
+..+|++.+.=.||+..................|. ...-...|..|.+..... .-.. +-|+++...+.+.||.|++
T Consensus 192 ~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~ 271 (453)
T PF09423_consen 192 HANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDT 271 (453)
T ss_dssp HHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--S
T ss_pred hhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEec
Confidence 45789999999999853222111111000111221 223334555566653322 1112 3366677776799999998
Q ss_pred ccc
Q psy15259 251 NVY 253 (257)
Q Consensus 251 n~~ 253 (257)
-.|
T Consensus 272 R~~ 274 (453)
T PF09423_consen 272 RSY 274 (453)
T ss_dssp SSS
T ss_pred hhc
Confidence 765
No 110
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=92.33 E-value=0.39 Score=47.33 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhc----CCccEEEEcCCCCcCcccc-cCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 122 LDVIRSALEQIKKH----KNISMVYMTGDLVAHAIWE-TSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 122 ~~l~~s~l~~i~~~----~~~dfii~TGD~v~H~~~~-~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+..+.+.++.+++. ...-+++-.||.+....+. .++. .-+.+.|... +. =+.++||||+
T Consensus 57 ~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g------~~~i~~mN~~--g~-Da~tlGNHEF 120 (551)
T PRK09558 57 LAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDA------EPDFRGMNLI--GY-DAMAVGNHEF 120 (551)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCC------chhHHHHhcC--CC-CEEccccccc
Confidence 35667777777641 2346888999998755432 1111 1223334432 22 3567899997
No 111
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=92.16 E-value=0.29 Score=45.12 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
+..+++.... +..+-.||.||.++.+... .+.+..+. .++-.+| ..|+.+.||||....+
T Consensus 74 L~~l~~~~g~-~~~~~ylfLGDyVDRG~~s------~evl~ll~-~lki~~p-~~v~llRGNHE~~~~~ 133 (320)
T PTZ00480 74 LLRLFEYGGY-PPESNYLFLGDYVDRGKQS------LETICLLL-AYKIKYP-ENFFLLRGNHECASIN 133 (320)
T ss_pred HHHHHHhcCC-CCcceEEEeceecCCCCCc------HHHHHHHH-HhcccCC-CceEEEecccchhhhh
Confidence 3345544332 3446788999999977532 12333322 2333345 3699999999986544
No 112
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=92.07 E-value=2.6 Score=38.39 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=59.5
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHh----cCC
Q psy15259 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKK----HKN 137 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~CD~P~~l~~s~l~~i~~----~~~ 137 (257)
.+..+.+|+.+||+|+|..- -...++.+|+.... ..-
T Consensus 23 ~~~~~~~~VilSDV~LD~p~---------------------------------------tl~~L~kvf~~y~~~~~~~~~ 63 (291)
T PTZ00235 23 KNDKRHNWIIMHDVYLDSPY---------------------------------------TFEVLDKMLSLYVNTYPENEL 63 (291)
T ss_pred cCCCceEEEEEEeeccCCHH---------------------------------------HHHHHHHHHHHhhccCcccCC
Confidence 45567899999999998421 12345555555532 123
Q ss_pred ccEEEEcCCCCcCcccc--cCHHHHHHHHHHHHHHHHHHhC----CCCEEEecCCCCCCC-CCCCCCCCC
Q psy15259 138 ISMVYMTGDLVAHAIWE--TSRAKNIEVMKVVAELFREYLG----DIPVIPIIGNHETHP-VNVFSPYFV 200 (257)
Q Consensus 138 ~dfii~TGD~v~H~~~~--~s~~~~~~~~~~~~~~l~~~~~----~~pv~~~lGNHD~~P-~n~f~~~~~ 200 (257)
|-.+|+.|+...+-+-. .+.+.-.+....+..++.+.|| ...+..++|-+|.+. .+.++...+
T Consensus 64 P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw~s~~~LPR~PI 133 (291)
T PTZ00235 64 PVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPCACKNSIPKMPI 133 (291)
T ss_pred CeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCCcCcccCCCCCc
Confidence 88899999999875321 1111112334444442223343 568999999999864 345554443
No 113
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=90.87 E-value=0.67 Score=42.42 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 125 ~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
+..+++.+.. ..-+-.++.||.++.+... .+.+..+. .++-.+| .-|+.+.||||....+
T Consensus 58 L~~l~~~~~~-~~~~~~lfLGDyVDRG~~s------~evl~ll~-~lk~~~p-~~v~llrGNHE~~~~~ 117 (303)
T PTZ00239 58 LQALFKEGGD-IPNANYIFIGDFVDRGYNS------VETMEYLL-CLKVKYP-GNITLLRGNHESRQCT 117 (303)
T ss_pred HHHHHHhcCC-CCCceEEEeeeEcCCCCCH------HHHHHHHH-HhhhcCC-CcEEEEecccchHHHh
Confidence 3445544432 2346789999999987532 12333332 2333344 3689999999985433
No 114
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=90.53 E-value=0.83 Score=38.88 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=29.3
Q ss_pred CccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 137 NISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 137 ~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.-|.|+..||+- |....++..+.++.+ .-+|++ -|.+-||||++
T Consensus 43 ~eDiVllpGDiS----WaM~l~ea~~Dl~~i-----~~LPG~-K~m~rGNHDYW 86 (230)
T COG1768 43 PEDIVLLPGDIS----WAMRLEEAEEDLRFI-----GDLPGT-KYMIRGNHDYW 86 (230)
T ss_pred hhhEEEecccch----hheechhhhhhhhhh-----hcCCCc-EEEEecCCccc
Confidence 459999999985 655444444443322 346754 57789999986
No 115
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=90.53 E-value=1.9 Score=38.51 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+...|..+++..++||+|.-||+..|..- .+ ..+++.|.+. ++- ..++|||++
T Consensus 15 ~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~g-l~--------~~~~~~L~~~--G~D-~iTlGNH~f 69 (255)
T cd07382 15 KAVKEHLPKLKKEYKIDFVIANGENAAGGKG-IT--------PKIAKELLSA--GVD-VITMGNHTW 69 (255)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCccccCCCC-CC--------HHHHHHHHhc--CCC-EEEeccccc
Confidence 4677788888774478999999999998742 22 2334455543 344 556699986
No 116
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=90.28 E-value=0.6 Score=38.29 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC
Q psy15259 125 IRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHE 188 (257)
Q Consensus 125 ~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD 188 (257)
+-+-++.+.+ .+.+|++|..||......-+ ..+....+--+ .. .+|+|.+-|||+
T Consensus 13 ~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~-------~~~~~y~~g~~-~~-pipTyf~ggn~~ 68 (150)
T cd07380 13 LFEKVNTINKKKGPFDALLCVGDFFGDDEDD-------EELEAYKDGSK-KV-PIPTYFLGGNNP 68 (150)
T ss_pred HHHHHHHHhcccCCeeEEEEecCccCCccch-------hhHHHHhcCCc-cC-CCCEEEECCCCC
Confidence 3334444443 56899999999999865321 12222222211 12 389999999996
No 117
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=88.65 E-value=3.2 Score=37.33 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
+.+...|..+++.-++||+|.-||+..|+... + ...++.|++. ++-|+.+ |||..
T Consensus 16 ~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi-~--------~~~~~~L~~~--GvDviT~-GNH~~ 70 (266)
T TIGR00282 16 KIVKNNLPQLKSKYQADLVIANGENTTHGKGL-T--------LKIYEFLKQS--GVNYITM-GNHTW 70 (266)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcccCCCCCC-C--------HHHHHHHHhc--CCCEEEc-cchhc
Confidence 67888899998844789999999999887421 1 2334445543 5666655 99996
No 118
>KOG3818|consensus
Probab=87.70 E-value=6 Score=38.04 Aligned_cols=79 Identities=9% Similarity=0.040 Sum_probs=52.4
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHH---HhCCCCEEEecCCCCCCCCCCCCCCCCCCCCChhhHHHH
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFRE---YLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYES 212 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~---~~~~~pv~~~lGNHD~~P~n~f~~~~~~~~~~~~w~~~~ 212 (257)
..|-.|||-|-...--....+....++.+..++..|.. ..-++..+.++|-.|.+-.|.++.+.++ .-+...
T Consensus 312 ~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~iLPr~piP-----~~~~~~ 386 (525)
T KOG3818|consen 312 APPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDNILPRPPIP-----SLFTKH 386 (525)
T ss_pred CCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEEEecCCCCCCcCccCCCCCch-----HHHHHH
Confidence 46789999999887544333334444555555555422 1235788999999999988888887765 345566
Q ss_pred HHHHHhc
Q psy15259 213 FIQYWGW 219 (257)
Q Consensus 213 l~~~w~~ 219 (257)
+...|+.
T Consensus 387 i~kv~~~ 393 (525)
T KOG3818|consen 387 ISKVCKN 393 (525)
T ss_pred HHhhcCC
Confidence 6666664
No 119
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=87.25 E-value=0.85 Score=41.57 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 124 VIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 124 l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
.+..+++.+.. +..+-.+|.||.++-+... .+.+..++ .++-.+| ..|+.+.||||..-.+
T Consensus 66 ~L~~l~~~~~~-~~~~~~lfLGDyVDRG~~s------~evl~ll~-~lk~~~p-~~v~llrGNHE~~~~~ 126 (294)
T PTZ00244 66 DLLRIFEKCGF-PPYSNYLFLGDYVDRGKHS------VETITLQF-CYKIVYP-ENFFLLRGNHECASIN 126 (294)
T ss_pred HHHHHHHHcCC-CCcccEEEeeeEecCCCCH------HHHHHHHH-HHhhccC-CeEEEEecccchHhHh
Confidence 44455655543 3445677999999987532 12222222 2232345 4699999999985443
No 120
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=85.09 E-value=9.6 Score=34.04 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCCCCCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQG 202 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n~f~~~~~~~ 202 (257)
..+...|..+++.-++||||.-|.+..|+.- .+ ...++.|.+. ++-| .+.|||=.. ...
T Consensus 13 ~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~G-it--------~~~~~~L~~~--GvDv-iT~GNH~wd------kke--- 71 (253)
T PF13277_consen 13 RAVKEHLPELKEEYGIDFVIANGENAAGGFG-IT--------PKIAEELFKA--GVDV-ITMGNHIWD------KKE--- 71 (253)
T ss_dssp HHHHHHHHHHGG--G-SEEEEE-TTTTTTSS-----------HHHHHHHHHH--T-SE-EE--TTTTS------STT---
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcccCCCCC-CC--------HHHHHHHHhc--CCCE-EecCccccc------CcH---
Confidence 5677888888874489999999999999863 11 2334444444 4554 579999752 211
Q ss_pred CCChhhHHHHHHHHHhccC-ChhHHhhhhcCceEEEeecCCeEEEEEc
Q psy15259 203 PTSTSWVYESFIQYWGWSL-PESARQTFLKGGYYSFLTEKNLRIIVLN 249 (257)
Q Consensus 203 ~~~~~w~~~~l~~~w~~wl-~~~~~~~~~~~GyYs~~~~~glriIsLN 249 (257)
+++.+.+ ....| |.+.-....-.||..++. .|.||-++|
T Consensus 72 ------i~~~i~~-~~~ilRPaN~p~~~pG~G~~i~~~-~g~kv~ViN 111 (253)
T PF13277_consen 72 ------IFDFIDK-EPRILRPANYPPGTPGRGYRIFEK-NGKKVAVIN 111 (253)
T ss_dssp ------HHHHHHH--SSEE--TTS-TT-SSBSEEEEEE-TTEEEEEEE
T ss_pred ------HHHHHhc-CCCcEECCCCCCCCCcCcEEEEEE-CCEEEEEEE
Confidence 2333322 12222 222222222347777765 777776666
No 121
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=82.81 E-value=1.8 Score=39.72 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=30.1
Q ss_pred EEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 140 MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 140 fii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
-+||.||.++-+... .+.+..+. .++-.+| .-|+.+.||||....+
T Consensus 85 ~~vfLGDyVDRGp~s------~evl~ll~-~lk~~~p-~~v~lLRGNHE~~~l~ 130 (311)
T cd07419 85 DYLFLGDYVDRGSNS------LETICLLL-ALKVKYP-NQIHLIRGNHEDRDIN 130 (311)
T ss_pred eEEEECCccCCCCCh------HHHHHHHH-HhhhcCC-CcEEEeccccchHHHH
Confidence 367999999877532 23444433 3344455 5799999999985433
No 122
>KOG4184|consensus
Probab=74.81 E-value=6.1 Score=37.03 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=54.4
Q ss_pred cccCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-CChHHHHHHHHHHHHhcCCccEEEEcCCCCcCc
Q psy15259 73 TDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNC-DMPLDVIRSALEQIKKHKNISMVYMTGDLVAHA 151 (257)
Q Consensus 73 SDiH~D~~Y~~g~~a~C~~~~CCr~~~~~~~~~~~~ag~~G~y~~C-D~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~ 151 (257)
-|||+-.+|+.|.-- +... ...|.+|=....- .-....+|..+++++. -.||++++||= |-
T Consensus 188 DdiHlILEYK~Gd~~--G~~V------------AP~anR~I~~~D~~n~~m~~~E~f~~Al~~-fqPdLvVvsGl---hm 249 (478)
T KOG4184|consen 188 DDIHLILEYKAGDKW--GPYV------------APRANRYILHNDRNNPHMRAVEQFTDALKM-FQPDLVVVSGL---HM 249 (478)
T ss_pred CceEEEEEeccCCcc--cccc------------cccccceeeecCCCChHHHHHHHHHHHHHH-hCCCEEEEech---hH
Confidence 589999999988421 0000 1122222111111 1235678888888886 47899999995 34
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 152 IWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 152 ~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
..-+|++...+.++.+...|.+.=+++||-.=+
T Consensus 250 me~qske~r~~rl~~V~r~L~~iP~gip~HlEl 282 (478)
T KOG4184|consen 250 MEMQSKEEREARLQQVVRSLSDIPTGIPVHLEL 282 (478)
T ss_pred HhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhH
Confidence 444567766666666666665544566654433
No 123
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=71.34 E-value=18 Score=32.25 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+.+-|..+++.-++||||.-|-...|+.-- .+++++.+.++ ++- +.++|||=-
T Consensus 16 ~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Gi---------t~k~y~~l~~~--G~d-viT~GNH~w 70 (266)
T COG1692 16 KAVKEHLPQLKSKYKIDFVIVNGENAAGGFGI---------TEKIYKELLEA--GAD-VITLGNHTW 70 (266)
T ss_pred HHHHHHhHHHHHhhcCcEEEEcCccccCCcCC---------CHHHHHHHHHh--CCC-EEecccccc
Confidence 46777788888755899999999999998531 13445555555 343 568999974
No 124
>KOG4419|consensus
Probab=68.31 E-value=31 Score=34.47 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCccE-EEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCC
Q psy15259 123 DVIRSALEQIKKHKNISM-VYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPV 192 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~df-ii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~ 192 (257)
+.+..-++.+.+.+..|. ++=|||.=+...|....+..... ++.|-+..+. =.+++||||.+-.
T Consensus 72 ~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~----t~~l~~~~~y--D~l~lGNHEl~~~ 136 (602)
T KOG4419|consen 72 AAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIY----TNFLFKMMPY--DILTLGNHELYQA 136 (602)
T ss_pred HHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHH----HHHHHhcCcc--chhhhcchhhhhh
Confidence 555556666655445554 56699997777776432222111 2223333331 2578999998653
No 125
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=66.13 E-value=27 Score=24.07 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=28.1
Q ss_pred CccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 137 NISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 137 ~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
=.+.|+|.=|...+-.. + .+..-.+++.++..|++.|++.++
T Consensus 13 L~~~ilfi~D~Se~CGy--s----ie~Q~~L~~~ik~~F~~~P~i~V~ 54 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGY--S----IEEQLSLFKEIKPLFPNKPVIVVL 54 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-------HHHHHHHHHHHHHHTTTS-EEEEE
T ss_pred hcceEEEEEcCCCCCCC--C----HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35899999998876643 2 334456788899999999999875
No 126
>PF06358 DUF1065: Protein of unknown function (DUF1065); InterPro: IPR010470 This entry is represented by Beet necrotic yellow vein virus, p15; it is a family of uncharacterised viral proteins.
Probab=61.36 E-value=9.3 Score=28.57 Aligned_cols=42 Identities=14% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcc
Q psy15259 111 KYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAI 152 (257)
Q Consensus 111 ~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~ 152 (257)
.|.++++||.|....+|.-+-..+..+.|...=-||.+...+
T Consensus 56 sfaqfggcdipk~va~sis~va~ke~dadi~~~~~~v~~~~v 97 (111)
T PF06358_consen 56 SFAQFGGCDIPKHVADSISRVAIKEHDADIMVDRNSVTVRRV 97 (111)
T ss_pred hhhhhCCCCccHHHHHHHHHHHhhhcCccceeecCCeEEEEE
Confidence 455566899999988876654434347899888999887554
No 127
>KOG0373|consensus
Probab=59.83 E-value=11 Score=33.18 Aligned_cols=47 Identities=19% Similarity=0.414 Sum_probs=31.1
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.++..+ ||-||.|+.+..+ +++...+. .|+..+| ..|-..-||||+-
T Consensus 71 vP~tnY-iFmGDfVDRGyyS------LEtfT~l~-~LkaryP-~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 71 VPDTNY-IFMGDFVDRGYYS------LETFTLLL-LLKARYP-AKITLLRGNHESR 117 (306)
T ss_pred CCCcce-EEecccccccccc------HHHHHHHH-HHhhcCC-ceeEEeeccchhh
Confidence 344455 5789999987642 23443333 4566677 5788999999984
No 128
>KOG2863|consensus
Probab=58.45 E-value=17 Score=34.30 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=33.5
Q ss_pred HHHHHHHHHHh--cCCccEEEEcCCCCcCcccc--cCHHHHHHHHHHHHHHHHHHhC-----CCCEEEecCCCCC
Q psy15259 124 VIRSALEQIKK--HKNISMVYMTGDLVAHAIWE--TSRAKNIEVMKVVAELFREYLG-----DIPVIPIIGNHET 189 (257)
Q Consensus 124 l~~s~l~~i~~--~~~~dfii~TGD~v~H~~~~--~s~~~~~~~~~~~~~~l~~~~~-----~~pv~~~lGNHD~ 189 (257)
-+...++.+.+ ..++|++|..||.-+-..-+ .+. .+..-++.+-+-++ ++. -+|...+=||||.
T Consensus 15 ~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~si-avPpKy~~m~~F~~-YYsge~~APVlTIFIGGNHEA 87 (456)
T KOG2863|consen 15 NIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSI-AVPPKYRRMGDFYK-YYSGEIKAPVLTIFIGGNHEA 87 (456)
T ss_pred HHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccc-cCCHHHHHHHHHHH-HhCCcccCceeEEEecCchHH
Confidence 34445555554 34899999999987533211 000 00111222222222 332 2566788899997
No 129
>PF06245 DUF1015: Protein of unknown function (DUF1015); InterPro: IPR008323 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.85 E-value=20 Score=34.18 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q psy15259 108 RATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNH 187 (257)
Q Consensus 108 ~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNH 187 (257)
...-|+-|. | ...+...++.+.....|.+-+-..|-+.|.+|..+.+.. ++.+.+.|. ...++|.+=|||
T Consensus 142 ~~pI~lly~--d--~~~i~~~i~~~~~~~~p~~~~~~~~G~~H~lW~v~d~~~---i~~i~~~~~---~~~~lyIADGHH 211 (416)
T PF06245_consen 142 LSPIFLLYD--D--DNEIDELIDEAKEKGEPLYDFTDMDGVRHRLWRVTDPAV---IAKIQEAFE---ADKPLYIADGHH 211 (416)
T ss_pred cCcEEEEEC--C--chHHHHHHHHHHhcCCCeEEEEcCCCCEEEEEEeCCHHH---HHHHHHHHh---hcCceEEecCcH
Confidence 445577773 3 356777888877324666666667999999998765433 333444442 356899999999
Q ss_pred CC
Q psy15259 188 ET 189 (257)
Q Consensus 188 D~ 189 (257)
=+
T Consensus 212 R~ 213 (416)
T PF06245_consen 212 RY 213 (416)
T ss_pred HH
Confidence 64
No 130
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=53.44 E-value=1e+02 Score=24.63 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcC---CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTG---DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TG---D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
..+++.+...+.. .+||.|++.. |+.. ..+.+...+.++.+.+.+++..|+++|+.+
T Consensus 37 ~~~~~~~~~~~~~-~~pd~v~i~~G~ND~~~----~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 37 RQYLEHIEPQLIQ-KNPSKVFLFLGTNDIGK----EVSSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEEeccccCCC----CCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3444444344444 4778876653 4322 125667778888999999988888887754
No 131
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=50.80 E-value=94 Score=24.82 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCccEEEEcC---CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 136 KNISMVYMTG---DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 136 ~~~dfii~TG---D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
.+||.|++.+ |+.. ..+.+...+.++.+.+.+++..|+++|+.+-
T Consensus 49 ~~p~~vvi~~G~ND~~~----~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~ 96 (171)
T cd04502 49 YQPRRVVLYAGDNDLAS----GRTPEEVLRDFRELVNRIRAKLPDTPIAIIS 96 (171)
T ss_pred CCCCEEEEEEecCcccC----CCCHHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 4788888844 6543 2246677788899999999988888888753
No 132
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=48.98 E-value=86 Score=22.55 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC
Q psy15259 126 RSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHE 188 (257)
Q Consensus 126 ~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD 188 (257)
+.+++.+.+ ..||+|+.-.++.+-+. ..+.+.|++..+++|+..+-+++|
T Consensus 33 ~~~~~~~~~-~~~d~iiid~~~~~~~~------------~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 33 EEALELLKK-HPPDLIIIDLELPDGDG------------LELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHH-STESEEEEESSSSSSBH------------HHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHHHHHhcc-cCceEEEEEeeeccccc------------cccccccccccccccEEEecCCCC
Confidence 455666665 46999999888776321 244556677778888888776666
No 133
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.91 E-value=86 Score=25.46 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHHHHHHHh--cCCccEEEEcC---CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 126 RSALEQIKK--HKNISMVYMTG---DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 126 ~s~l~~i~~--~~~~dfii~TG---D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
..+++.+.+ ..++|.|++.. |+.. ..+.+...+.+..+.+.+++..|+++|+.+
T Consensus 54 ~~~~~~l~~~~~~~pd~Vii~~G~ND~~~----~~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 54 ADLLRQLAPLPETRFDVAVISIGVNDVTH----LTSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred HHHHHHHHhcccCCCCEEEEEecccCcCC----CCCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 334445543 45889987743 3332 234566777888999999988889998764
No 134
>KOG2476|consensus
Probab=48.42 E-value=20 Score=34.76 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHHHh----cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC
Q psy15259 125 IRSALEQIKK----HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHE 188 (257)
Q Consensus 125 ~~s~l~~i~~----~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD 188 (257)
+..+++.|++ .+.+|++|..|++.+|+..+ . +. ....... ..+| +|+|..-+|.-
T Consensus 18 ~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~--~----e~-~~ykng~-~~vP-iptY~~g~~~~ 76 (528)
T KOG2476|consen 18 FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQN--A----EV-EKYKNGT-KKVP-IPTYFLGDNAN 76 (528)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEecccCCCccch--h----HH-HHHhcCC-ccCc-eeEEEecCCCC
Confidence 4455666654 56799999999999995321 1 11 1111111 2345 88998887763
No 135
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=47.67 E-value=13 Score=29.79 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=17.4
Q ss_pred CChHHHHHHHHHHHHhcCCccEEEEcCCCCc
Q psy15259 119 DMPLDVIRSALEQIKKHKNISMVYMTGDLVA 149 (257)
Q Consensus 119 D~P~~l~~s~l~~i~~~~~~dfii~TGD~v~ 149 (257)
|-+. .+.+++++..+ +.|+||.||-.-.
T Consensus 51 Dd~~-~i~~~l~~~~~--~~DliIttGG~g~ 78 (144)
T TIGR00177 51 DDPE-EIREILRKAVD--EADVVLTTGGTGV 78 (144)
T ss_pred CCHH-HHHHHHHHHHh--CCCEEEECCCCCC
Confidence 4443 34445554433 6899999998543
No 136
>KOG0372|consensus
Probab=47.11 E-value=21 Score=32.02 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=28.4
Q ss_pred EEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 140 MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 140 fii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
=-||.||.|+.+..+ .+++- +.-.+|-.+| -.|-.+-||||+-
T Consensus 72 ~YLFLGDyVDRG~~S------vEt~l-LLl~lK~rYP-~ritLiRGNHEsR 114 (303)
T KOG0372|consen 72 NYLFLGDYVDRGYYS------VETFL-LLLALKVRYP-DRITLIRGNHESR 114 (303)
T ss_pred ceEeecchhccccch------HHHHH-HHHHHhhcCc-ceeEEeeccchhh
Confidence 357899999987632 12221 2234555667 5689999999984
No 137
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.23 E-value=1.1e+02 Score=24.32 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.6
Q ss_pred CCccEEEEcC---CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 136 KNISMVYMTG---DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 136 ~~~dfii~TG---D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
.++|+|++.. |... ..+.+...+.++.+.+.+++..++.+|+.+
T Consensus 47 ~~pd~vvl~~G~ND~~~----~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 47 LQPKAIFIMIGINDLAQ----GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred cCCCEEEEEeeccCCCC----CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4789887744 4432 234566777888889999988888888874
No 138
>PHA02538 N capsid protein; Provisional
Probab=45.89 E-value=18 Score=33.85 Aligned_cols=49 Identities=18% Similarity=0.444 Sum_probs=29.8
Q ss_pred cCCccEEEEcCC-CCcCccccc-CHHHHHHHHHHHHHHH--HHHhCCCCEEEec
Q psy15259 135 HKNISMVYMTGD-LVAHAIWET-SRAKNIEVMKVVAELF--REYLGDIPVIPII 184 (257)
Q Consensus 135 ~~~~dfii~TGD-~v~H~~~~~-s~~~~~~~~~~~~~~l--~~~~~~~pv~~~l 184 (257)
..++|+|++.|. ++.+.-... .. ....+.+...+++ .+.+++.|.|.+|
T Consensus 223 r~dpdLVvivG~dLla~~~~~l~n~-~~~ptE~~Aa~~i~~~k~iGGlpa~~~P 275 (348)
T PHA02538 223 QDDPDLVVIVGRDLLADKYFPIVNK-AQKPTEKIAADLIISQKRIGGLPAVRVP 275 (348)
T ss_pred cCCCCEEEEEChhhhhhhhhhhhhc-CCCcHHHHHHHHHHHHhhcCCCcceecC
Confidence 357999999995 555442211 11 1122344445555 6788999999887
No 139
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.15 E-value=1e+02 Score=24.09 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
.++|.|++..-.=+.. ...+.+...+.++.+.+.+++..|+.+|+.+
T Consensus 39 ~~pd~vvi~~G~ND~~-~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 39 AKPDVVLLHLGTNDLV-LNRDPDTAPDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred CCCCEEEEeccCcccc-cCCCHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5789888865322211 1135566777888999999988888887765
No 140
>KOG0374|consensus
Probab=44.30 E-value=14 Score=34.22 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=31.6
Q ss_pred cEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCCC
Q psy15259 139 SMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVN 193 (257)
Q Consensus 139 dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~P~n 193 (257)
.--+|.||.|+-+..+. +.+.- .-.++..+| .-|+..-||||....|
T Consensus 88 ~~ylFLGDYVDRG~~sl------E~i~L-L~a~Ki~yp-~~~~lLRGNHE~~~in 134 (331)
T KOG0374|consen 88 QNYVFLGDYVDRGKQSL------ETICL-LFALKIKYP-ENVFLLRGNHECASIN 134 (331)
T ss_pred ccEEEecccccCCccce------EEeeh-hhhhhhhCC-ceEEEecccccccccc
Confidence 45689999999875321 12221 223444577 5799999999998776
No 141
>TIGR01551 major_capsid_P2 phage major capsid protein, P2 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage P2 and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=40.85 E-value=22 Score=32.96 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=28.3
Q ss_pred cCCccEEEEcCC-CCcCccccc-CHHHHHHHHHHHHHHHH--HHhCCCCEEEec
Q psy15259 135 HKNISMVYMTGD-LVAHAIWET-SRAKNIEVMKVVAELFR--EYLGDIPVIPII 184 (257)
Q Consensus 135 ~~~~dfii~TGD-~v~H~~~~~-s~~~~~~~~~~~~~~l~--~~~~~~pv~~~l 184 (257)
..++|+|++.|. ++.+.-... .. ....+.+...+++. +.+++.|.|.+|
T Consensus 212 r~dpdLVvivG~dLla~~~~~l~n~-~~~ptE~~Aa~~~~~~k~igGl~a~~~P 264 (327)
T TIGR01551 212 RNDPDLVVLVGADLVSKETKLIQQK-HLTPSEKIALGSHNLMGSFGGMNAITPP 264 (327)
T ss_pred cCCCCEEEEEChhhhhhhhhhhhhc-CCCcHHHHHHHHHHHHHhhCCCcceecC
Confidence 457999999995 555442211 11 11123333444444 678899999877
No 142
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.24 E-value=1.4e+02 Score=22.96 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q psy15259 126 RSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNH 187 (257)
Q Consensus 126 ~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNH 187 (257)
+..++.+.+..++|+|.+|. +.. + ......+.+.+|+..|+++| .+=|.|
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~-~~~------~----~~~~~~~~~~ik~~~p~~~i-v~GG~~ 77 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL-MTS------A----IYEALELAKIAKEVLPNVIV-VVGGPH 77 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee-ccc------c----HHHHHHHHHHHHHHCCCCEE-EECCcc
Confidence 44555565424899999995 211 1 11346677889998886433 334444
No 143
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.48 E-value=1.4e+02 Score=23.88 Aligned_cols=46 Identities=7% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCccEEEEcC---CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 136 KNISMVYMTG---DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 136 ~~~dfii~TG---D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
.++|.|++.. |...+. .+.+...+.++.+.+.+++..|+.+|+.+-
T Consensus 55 ~~pd~Vii~~G~ND~~~~~---~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQ---LNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred CCCCEEEEECCCcccccCC---CCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 4788888874 433321 245666778889999999888888877653
No 144
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=33.08 E-value=2e+02 Score=23.06 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=30.9
Q ss_pred CccEEEEcC---CCCcCcc-cccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 137 NISMVYMTG---DLVAHAI-WETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 137 ~~dfii~TG---D~v~H~~-~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
++|.|++.. |...... ...+.+.-...++.+.+.+++..++.+|+.+
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 799988865 4432111 0124555666788888888887788887776
No 145
>KOG2499|consensus
Probab=33.01 E-value=1.9e+02 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHH
Q psy15259 121 PLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRA 158 (257)
Q Consensus 121 P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~ 158 (257)
-++.+...++.|.+.-..+|+=..||=|.-..|+.+.+
T Consensus 310 tydvls~i~~dv~evFp~~~~HlGGDEV~~~CW~s~~~ 347 (542)
T KOG2499|consen 310 TYDVLSEIFEDVSEVFPDEFFHLGGDEVSTPCWKSNPE 347 (542)
T ss_pred HHHHHHHHHHHHHHhCcHHHeecCCceeecccccCChH
Confidence 35777888888887334788888999999999987643
No 146
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=32.85 E-value=3.2e+02 Score=23.52 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHh---cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEE---EecCCCCCC------
Q psy15259 123 DVIRSALEQIKK---HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVI---PIIGNHETH------ 190 (257)
Q Consensus 123 ~l~~s~l~~i~~---~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~---~~lGNHD~~------ 190 (257)
..++.++++-.+ ...|.+|||-=|--.++- +.+.+.|++. .+.||| .-+|++++-
T Consensus 87 ~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~------------~~~~~~i~~a-s~~pifwqFVgiG~~~f~fL~kLD 153 (200)
T PF10138_consen 87 PVMEDVLDHYFKREPSDAPALVLFITDGGPDDR------------RAIEKLIREA-SDEPIFWQFVGIGDSNFGFLEKLD 153 (200)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEecCCccch------------HHHHHHHHhc-cCCCeeEEEEEecCCcchHHHHhh
Confidence 567777777763 235899999877655432 1223334433 357776 567888731
Q ss_pred --------CCCCCCCCCCCCCCChhhHHHHHHHHHhccCChh
Q psy15259 191 --------PVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPES 224 (257)
Q Consensus 191 --------P~n~f~~~~~~~~~~~~w~~~~l~~~w~~wl~~~ 224 (257)
..+.|+...++ ..+..-||+.|-..+-.||...
T Consensus 154 ~l~gR~vDNa~Ff~~~d~~-~lsD~eLy~~LL~Efp~Wl~~a 194 (200)
T PF10138_consen 154 DLAGRVVDNAGFFAIDDID-ELSDEELYDRLLAEFPDWLKAA 194 (200)
T ss_pred ccCCcccCCcCeEecCCcc-cCCHHHHHHHHHHHHHHHHHHH
Confidence 23445555443 4566779999889898898754
No 147
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=32.42 E-value=2e+02 Score=22.30 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHE 188 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD 188 (257)
.+.|.+++.=|+.+. .....+..+.+.+++..++.|++.+ ||+-
T Consensus 74 ~~~d~ii~v~d~~~~--------~s~~~~~~~~~~~~~~~~~~p~ilv-~nK~ 117 (164)
T cd04101 74 ESPSVFILVYDVSNK--------ASFENCSRWVNKVRTASKHMPGVLV-GNKM 117 (164)
T ss_pred CCCCEEEEEEECcCH--------HHHHHHHHHHHHHHHhCCCCCEEEE-EECc
Confidence 367999998887642 2223344555666655456777654 9984
No 148
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=30.59 E-value=20 Score=21.30 Aligned_cols=23 Identities=22% Similarity=0.674 Sum_probs=15.8
Q ss_pred CchhhhhhcCCCCChhhhcccccccCCC
Q psy15259 2 DVLFDLKDQGIPLTPERVCGTVLENSNC 29 (257)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~C~~~~~~~~C 29 (257)
|.|+..|.+. ++|+.+|.. ++ .|
T Consensus 13 ~~ii~~l~~~--~~p~~iC~~-i~--~C 35 (35)
T PF03489_consen 13 PQIIQLLEKQ--LDPQQICTK-IG--LC 35 (35)
T ss_dssp HHHHHHHHTT--STHHHHHHH-TT--SS
T ss_pred HHHHHHHHhc--CChHHHHHH-cC--CC
Confidence 4556666553 589999997 55 66
No 149
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.55 E-value=2.6e+02 Score=22.38 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHH
Q psy15259 118 CDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRA 158 (257)
Q Consensus 118 CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~ 158 (257)
.|-+.. +.++++...+....|+||.||-.- .+....+++
T Consensus 43 ~Dd~~~-i~~~l~~~~~~~~~DlVittGG~s-~g~~D~t~~ 81 (152)
T cd00886 43 PDDKDE-IREALIEWADEDGVDLILTTGGTG-LAPRDVTPE 81 (152)
T ss_pred CCCHHH-HHHHHHHHHhcCCCCEEEECCCcC-CCCCcCcHH
Confidence 566644 444455443322689999999954 333333443
No 150
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=30.22 E-value=2.8e+02 Score=22.63 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHH
Q psy15259 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAK 159 (257)
Q Consensus 123 ~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~ 159 (257)
..+.+++++..+..+.|+||.||-.- .+....+++-
T Consensus 49 ~~i~~~l~~~~~~~~~DlVIttGGtg-~g~~D~t~ea 84 (163)
T TIGR02667 49 YQIRAQVSAWIADPDVQVILITGGTG-FTGRDVTPEA 84 (163)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcC-CCCCCCcHHH
Confidence 44555665553224689999999854 3433444443
No 151
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.61 E-value=2e+02 Score=21.71 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 118 CDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 118 CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
.+.|.+ .+++.+.+ .++|+|.++.=...|. .....+.+.+++..++-....+-|+|-.
T Consensus 35 ~~~~~~---~l~~~~~~-~~pdvV~iS~~~~~~~----------~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 35 VDVPPE---EIVEAAKE-EDADAIGLSGLLTTHM----------TLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred CCCCHH---HHHHHHHH-cCCCEEEEeccccccH----------HHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 445533 44445554 4899999987654432 3456777788887662344566777754
No 152
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=28.90 E-value=1.3e+02 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCC
Q psy15259 128 ALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGD 177 (257)
Q Consensus 128 ~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~ 177 (257)
.++.|.+ .++-.||+ .||.-.||. +++..|.+.+|+
T Consensus 54 ~i~~i~~~fP~~kfiL-IGDsgq~Dp-------------eiY~~ia~~~P~ 90 (100)
T PF09949_consen 54 NIERILRDFPERKFIL-IGDSGQHDP-------------EIYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHCCCCcEEE-EeeCCCcCH-------------HHHHHHHHHCCC
Confidence 3444544 55566655 589888874 345556677775
No 153
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=28.04 E-value=26 Score=30.91 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHHh-cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCC
Q psy15259 119 DMPLDVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGN 186 (257)
Q Consensus 119 D~P~~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGN 186 (257)
|+-.+++.+.+-+.+. ..+.|+++.+||.-. ++.+.+.+....+.+..+ .| +++...++|-
T Consensus 64 D~~vel~~ne~Y~~k~~~~~~Dliil~Gd~Q~-----~~~~gqyel~~~~Ld~a~-e~-g~~~IyTLGG 125 (258)
T COG2047 64 DSTVELMRNEFYYWKSPGGERDLIILVGDTQA-----TSSEGQYELTGKILDIAK-EF-GARMIYTLGG 125 (258)
T ss_pred CceEEeeeceeEEEecCCCCCcEEEEeccccc-----cCcchhHHHHHHHHHHHH-Hc-CCcEEEEecC
Confidence 3344556666666665 357899999999765 344555555555555444 45 4777777773
No 154
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.43 E-value=1.5e+02 Score=21.75 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=24.7
Q ss_pred cCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 135 HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 135 ~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
..++|+||+.=|.+.|+.. ..+.+.-++. ++|++.+-
T Consensus 46 i~~aD~VIv~t~~vsH~~~-----------~~vk~~akk~--~ip~~~~~ 82 (97)
T PF10087_consen 46 IKKADLVIVFTDYVSHNAM-----------WKVKKAAKKY--GIPIIYSR 82 (97)
T ss_pred cCCCCEEEEEeCCcChHHH-----------HHHHHHHHHc--CCcEEEEC
Confidence 3578999999999999742 2233333333 68888763
No 155
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.34 E-value=79 Score=24.78 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHhcCCccEEEEcCCCCc
Q psy15259 119 DMPLDVIRSALEQIKKHKNISMVYMTGDLVA 149 (257)
Q Consensus 119 D~P~~l~~s~l~~i~~~~~~dfii~TGD~v~ 149 (257)
|-+.. +.+.++++.+ ..|+||.||-.-.
T Consensus 43 Dd~~~-i~~~i~~~~~--~~DlvittGG~g~ 70 (133)
T cd00758 43 DDADS-IRAALIEASR--EADLVLTTGGTGV 70 (133)
T ss_pred CCHHH-HHHHHHHHHh--cCCEEEECCCCCC
Confidence 44434 4445554443 4899999999653
No 156
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=27.03 E-value=52 Score=30.09 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=16.5
Q ss_pred HHHHh--cCCccEEEEcCC-CCcCcc
Q psy15259 130 EQIKK--HKNISMVYMTGD-LVAHAI 152 (257)
Q Consensus 130 ~~i~~--~~~~dfii~TGD-~v~H~~ 152 (257)
+.|++ =..+||||+||| -|+|-.
T Consensus 7 ~em~~rGWd~lDvilVtGDAYVDHPs 32 (302)
T PF08497_consen 7 EEMKARGWDELDVILVTGDAYVDHPS 32 (302)
T ss_pred HHHHHcCCccccEEEEeCcccccCcc
Confidence 34554 247999999999 677753
No 157
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=25.94 E-value=2.4e+02 Score=22.40 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCcCccc-ccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 138 ISMVYMTGDLVAHAIW-ETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 138 ~dfii~TGD~v~H~~~-~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
+|.|++..-.=+-... ..+.+.....++.+.+.+++..|+.+|+.+.
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~ 103 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELRKRYPDAPIVLML 103 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 6666665433221111 1234555566677777777777777776653
No 158
>KOG1625|consensus
Probab=25.82 E-value=3.5e+02 Score=27.12 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCccc--ccCHHHH--HHHHHHHHHHHHHHh--CCCCE
Q psy15259 107 DRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIW--ETSRAKN--IEVMKVVAELFREYL--GDIPV 180 (257)
Q Consensus 107 ~~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~--~~s~~~~--~~~~~~~~~~l~~~~--~~~pv 180 (257)
...|+|+.- =|.-++.+..+|+.+++ .++|.+|.+|=.++-.-. ....... .+.++.....+.+.+ +.+.|
T Consensus 345 vasGPyt~s--Dnl~yepL~dll~~v~~-~~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~~~~~~v 421 (600)
T KOG1625|consen 345 VASGPYTAS--DNLSYEPLCDLLDYVNA-ERPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLVGSKTQV 421 (600)
T ss_pred EEecCccCc--cccchhHHHHHHHHHhc-CCCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhccCCcceE
Confidence 456888874 35567888899999986 589999999999874422 2111100 112222223333333 23457
Q ss_pred EEecCCCCCCCCCCCCC
Q psy15259 181 IPIIGNHETHPVNVFSP 197 (257)
Q Consensus 181 ~~~lGNHD~~P~n~f~~ 197 (257)
..++-=.|......|+.
T Consensus 422 VlvPs~~Da~~~~vfPq 438 (600)
T KOG1625|consen 422 VLVPSTNDALCLPVFPQ 438 (600)
T ss_pred EEeccccccccCccCCC
Confidence 77777666544444443
No 159
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=25.80 E-value=2.3e+02 Score=25.26 Aligned_cols=64 Identities=23% Similarity=0.431 Sum_probs=42.8
Q ss_pred hHHHHHH---HHHHHHh-cCCccEEEEc------------CCCCc--Ccccc------------cCHHHHHHHHHHHHHH
Q psy15259 121 PLDVIRS---ALEQIKK-HKNISMVYMT------------GDLVA--HAIWE------------TSRAKNIEVMKVVAEL 170 (257)
Q Consensus 121 P~~l~~s---~l~~i~~-~~~~dfii~T------------GD~v~--H~~~~------------~s~~~~~~~~~~~~~~ 170 (257)
+.++++. .++.+++ ..+.|++|+| |-.++ |++.. .|.++..+.++.+.+.
T Consensus 81 ~~e~~~~~~~~l~~~~~~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~ 160 (251)
T PF08885_consen 81 PEELLAARNQHLEEVREALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDL 160 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHH
Confidence 4445443 4444444 4578999997 55554 33322 3557778889999999
Q ss_pred HHHHhCCCCEEEec
Q psy15259 171 FREYLGDIPVIPII 184 (257)
Q Consensus 171 l~~~~~~~pv~~~l 184 (257)
|++.-|++.|..+.
T Consensus 161 l~~~nP~~kiilTV 174 (251)
T PF08885_consen 161 LRSINPDIKIILTV 174 (251)
T ss_pred HHhhCCCceEEEEe
Confidence 99998988888764
No 160
>PRK05434 phosphoglyceromutase; Provisional
Probab=25.00 E-value=2.7e+02 Score=27.54 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHhcCCccEEEEc---CCCCcCccccc-C---HHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC
Q psy15259 121 PLDVIRSALEQIKKHKNISMVYMT---GDLVAHAIWET-S---RAKNIEVMKVVAELFREYLGDIPVIPIIGNHE 188 (257)
Q Consensus 121 P~~l~~s~l~~i~~~~~~dfii~T---GD~v~H~~~~~-s---~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD 188 (257)
.....+.+++.+++ .++|||++- .|++.|.-... . .+..-..+..+.+.+++. +. ++.+.+.|=
T Consensus 372 ~~e~~d~~i~~l~~-~~~Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~~--g~-ivIITADHG 442 (507)
T PRK05434 372 AYEVTDKLVEAIES-GKYDFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLKV--GG-TLLITADHG 442 (507)
T ss_pred HHHHHHHHHHHHhc-cCCCEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhC--CC-EEEEEcCCC
Confidence 45688888888875 578998876 89999985421 1 122223344455555432 33 555555554
No 161
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=24.44 E-value=3.1e+02 Score=21.45 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHHhcCCccEEEEcCCCCc
Q psy15259 119 DMPLDVIRSALEQIKKHKNISMVYMTGDLVA 149 (257)
Q Consensus 119 D~P~~l~~s~l~~i~~~~~~dfii~TGD~v~ 149 (257)
|-+..+. ++++...+ +.|+||.||-+-.
T Consensus 41 Dd~~~i~-~~l~~~~~--~~D~VittGG~g~ 68 (144)
T PF00994_consen 41 DDPDAIK-EALRRALD--RADLVITTGGTGP 68 (144)
T ss_dssp SSHHHHH-HHHHHHHH--TTSEEEEESSSSS
T ss_pred CCHHHHH-HHHHhhhc--cCCEEEEcCCcCc
Confidence 3344444 44443333 4499999998643
No 162
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=24.35 E-value=3.1e+02 Score=20.52 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCccEEEEcCCCC
Q psy15259 126 RSALEQIKKHKNISMVYMTGDLV 148 (257)
Q Consensus 126 ~s~l~~i~~~~~~dfii~TGD~v 148 (257)
+.++++|++ ++..+||+..|..
T Consensus 22 ~~v~kai~~-gkaklViiA~D~~ 43 (99)
T PRK01018 22 KRTIKAIKL-GKAKLVIVASNCP 43 (99)
T ss_pred HHHHHHHHc-CCceEEEEeCCCC
Confidence 457788876 6789999999964
No 163
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=23.50 E-value=3.2e+02 Score=20.80 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecC
Q psy15259 126 RSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIG 185 (257)
Q Consensus 126 ~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lG 185 (257)
+.++..+....++.-|+++=| .........+.+.+++.-.++|||.+.-
T Consensus 27 dd~~~~i~~~~~i~avvi~~d-----------~~~~~~~~~ll~~i~~~~~~iPVFl~~~ 75 (115)
T PF03709_consen 27 DDALAIIESFTDIAAVVISWD-----------GEEEDEAQELLDKIRERNFGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHHCTTTEEEEEEECH-----------HHHHHHHHHHHHHHHHHSTT-EEEEEES
T ss_pred HHHHHHHHhCCCeeEEEEEcc-----------cccchhHHHHHHHHHHhCCCCCEEEEec
Confidence 344455554456777887755 1223345677888888888999998765
No 164
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=23.41 E-value=2e+02 Score=22.66 Aligned_cols=46 Identities=13% Similarity=-0.030 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 138 ISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 138 ~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
.-=|+|-||-|-+....+........+...++.|.... +++||.+.
T Consensus 34 v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~-~v~l~vC~ 79 (128)
T PRK00207 34 LVSVFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEH-GVALNVCV 79 (128)
T ss_pred eeEEEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhc-CCEEEEeH
Confidence 35699999999776444433322334455555553322 68999875
No 165
>PF05125 Phage_cap_P2: Phage major capsid protein, P2 family ; InterPro: IPR006441 This entry is represented by Bacteriophage P2, GpN. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family represents the major capsid protein component of the heads (capsids) of bacteriophage P2 and related phage including prophage. These sequences represent one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. ; GO: 0019028 viral capsid
Probab=23.24 E-value=58 Score=30.31 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=37.2
Q ss_pred CCCCCCCCCChHHHHHHHHHH-HHh--cCCccEEEEcCCCCcCcccc--cCHHHHHHHHHHHHHH--HHHHhCCCCEEEe
Q psy15259 111 KYGHYDNCDMPLDVIRSALEQ-IKK--HKNISMVYMTGDLVAHAIWE--TSRAKNIEVMKVVAEL--FREYLGDIPVIPI 183 (257)
Q Consensus 111 ~~G~y~~CD~P~~l~~s~l~~-i~~--~~~~dfii~TGD~v~H~~~~--~s~~~~~~~~~~~~~~--l~~~~~~~pv~~~ 183 (257)
.=|+|.+=| .|+..+++. |.. ..++|+|++.|.-+-|+... .... ...+.....+. ..+.+++.|.+.+
T Consensus 194 ~~gdY~nLD---alV~D~~~~lId~~~~~d~dLVvivGrdLladk~~~l~n~~-~~ptE~~A~~~i~~~k~iGGlpa~~v 269 (333)
T PF05125_consen 194 AGGDYKNLD---ALVFDAVNSLIDPWHRDDPDLVVIVGRDLLADKYFPLINAA-NKPTEKLAAQLIISQKRIGGLPAVTV 269 (333)
T ss_pred CCCccCCHH---HHHHHHHHccCCHHHcCCCCEEEEEChhHHhhhhhhhhccC-CCchHHHHHHHHHHHhhhcCCceeec
Confidence 446775322 344444443 323 35899999999755444221 1110 11222233333 4567889999988
Q ss_pred c
Q psy15259 184 I 184 (257)
Q Consensus 184 l 184 (257)
|
T Consensus 270 P 270 (333)
T PF05125_consen 270 P 270 (333)
T ss_pred C
Confidence 7
No 166
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=23.23 E-value=1.5e+02 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCccEEEEcCCCCc
Q psy15259 122 LDVIRSALEQIKKHKNISMVYMTGDLVA 149 (257)
Q Consensus 122 ~~l~~s~l~~i~~~~~~dfii~TGD~v~ 149 (257)
-.|++.+++++++ ++.+.++|||+..
T Consensus 27 TaLie~~~~~L~~--~~~~aVI~~Di~t 52 (202)
T COG0378 27 TALIEKTLRALKD--EYKIAVITGDIYT 52 (202)
T ss_pred HHHHHHHHHHHHh--hCCeEEEeceeec
Confidence 3789999999986 5899999999975
No 167
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.17 E-value=2e+02 Score=23.20 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCccEEEE-cCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 136 KNISMVYM-TGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 136 ~~~dfii~-TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
.+||+|++ -|-+ + +.. .....+.+..+.+.+++..|++||+.+
T Consensus 56 ~~pd~vii~~G~N-D---~~~-~~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 56 VPADLYIIDCGPN-I---VGA-EAMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred cCCCEEEEEeccC-C---Ccc-HHHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 47898776 4433 1 111 113456788888999999999998764
No 168
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.72 E-value=1.3e+02 Score=23.60 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEec
Q psy15259 159 KNIEVMKVVAELFREYLGDIPVIPII 184 (257)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~pv~~~l 184 (257)
...+.+..+.+.+++.||+.+|+.+.
T Consensus 14 ~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 14 TAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 34457888899999999999998774
No 169
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=22.58 E-value=1.5e+02 Score=29.50 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q psy15259 108 RATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNH 187 (257)
Q Consensus 108 ~ag~~G~y~~CD~P~~l~~s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNH 187 (257)
....||+.+ --.| ++|-+--..++--.|+|.||--. +.+++++...+|.-+ .|+..++-|
T Consensus 406 ~Q~lWGSIG-~t~p-----AalGa~~A~~drR~IL~iGDGs~-----------QlTvQEiStmiR~gl--~p~ifvlNN- 465 (557)
T COG3961 406 SQPLWGSIG-YTLP-----AALGAALAAPDRRVILFIGDGSL-----------QLTVQEISTMIRWGL--KPIIFVLNN- 465 (557)
T ss_pred cccchhhcc-cccH-----hhhhhhhcCCCccEEEEEcCchh-----------hhhHHHHHHHHHcCC--CcEEEEEcC-
Confidence 446799873 3334 33333222457789999999653 235677777777643 466666655
Q ss_pred CCCCCCCCCCCC-CCCCCChhhHHHHHHHHHh
Q psy15259 188 ETHPVNVFSPYF-VQGPTSTSWVYESFIQYWG 218 (257)
Q Consensus 188 D~~P~n~f~~~~-~~~~~~~~w~~~~l~~~w~ 218 (257)
|-|....+--+. -+.+.=.+|.|..+.+.+.
T Consensus 466 ~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg 497 (557)
T COG3961 466 DGYTIERAIHGPTAPYNDIQSWDYTALPEAFG 497 (557)
T ss_pred CCcEEEehhcCCCcCcccccccchhhhhhhcC
Confidence 443322111110 0011123588888776654
No 170
>KOG0371|consensus
Probab=22.25 E-value=69 Score=29.00 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=24.9
Q ss_pred EEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 141 VYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 141 ii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
.||-||.++.+..+ . ++...+. .++-.+| -.|-.+.||||+-
T Consensus 90 ylfmGDyvdrGy~S--v----etVS~lv-a~Kvry~-~rvtilrGNHEsr 131 (319)
T KOG0371|consen 90 YLFMGDYVDRGYYS--V----ETVSLLV-ALKVRYP-DRVTILRGNHESR 131 (319)
T ss_pred eeeeeeecccccch--H----HHHHHHH-Hhhcccc-ceeEEecCchHHH
Confidence 46789999877532 1 1222221 2232345 4688999999974
No 171
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=21.82 E-value=77 Score=29.12 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCccEEEEcCCC------CcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 136 KNISMVYMTGDL------VAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 136 ~~~dfii~TGD~------v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
+.--.|+|.||+ +..... .+......++.++..|.+.||+--|+.+
T Consensus 33 ~~~~vVfF~GDvQdf~~~M~~~~d--~~~~~~wslE~vA~iL~~kFp~shIwVI 84 (303)
T PF10561_consen 33 PSSNVVFFPGDVQDFEENMEQHPD--NKQYRKWSLENVAWILSSKFPNSHIWVI 84 (303)
T ss_pred CCceEEECCCchhhHHHHhhcCCc--ccceeeCCHHHHHHHHHHhCCCccEEEE
Confidence 455789999998 322111 1223345678889999999997655543
No 172
>PRK13720 modulator of post-segregation killing protein; Provisional
Probab=21.78 E-value=60 Score=22.63 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=11.3
Q ss_pred eeEEEecccCC-CCC
Q psy15259 67 ISIIQLTDIHY-DPK 80 (257)
Q Consensus 67 ~kvlhlSDiH~-D~~ 80 (257)
-||+|+-|||+ |+.
T Consensus 33 nRv~h~V~IH~pDpe 47 (70)
T PRK13720 33 DRVSHTVDIHLSDTK 47 (70)
T ss_pred eeeeeEEeeccCCCc
Confidence 47999999999 443
No 173
>KOG3947|consensus
Probab=21.39 E-value=1.9e+02 Score=26.37 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=13.6
Q ss_pred CCCCceeEEEecccCCC
Q psy15259 62 ASGDEISIIQLTDIHYD 78 (257)
Q Consensus 62 ~~~~~~kvlhlSDiH~D 78 (257)
.+....|++-+||.|--
T Consensus 57 ~~~~~~r~VcisdtH~~ 73 (305)
T KOG3947|consen 57 VGPGYARFVCISDTHEL 73 (305)
T ss_pred CCCCceEEEEecCcccc
Confidence 45567899999999974
No 174
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.10 E-value=2.9e+02 Score=21.16 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCC
Q psy15259 127 SALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGN 186 (257)
Q Consensus 127 s~l~~i~~~~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGN 186 (257)
.+++.+.+ .++|+|.+++-...+ ......+.+.+++.-++...+.+-|+
T Consensus 41 ~~~~~a~~-~~~d~V~iS~~~~~~----------~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 41 EIVEAAIQ-EDVDVIGLSSLSGGH----------MTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHH-cCCCEEEEcccchhh----------HHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 45555655 489999999876432 23456777788887443455666665
No 175
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=21.08 E-value=3.3e+02 Score=24.48 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHHHHHh-cCCccEEEEcCCCCcCccc---------ccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 117 NCDMPLDVIRSALEQIKK-HKNISMVYMTGDLVAHAIW---------ETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 117 ~CD~P~~l~~s~l~~i~~-~~~~dfii~TGD~v~H~~~---------~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
.|| |..+++++++-++. ..-+|+--++|--..-+.- +++.++-.+.-+.+-+.+-+.| ++|||.-
T Consensus 52 vgd-p~~~~~A~f~~ik~AaelIDM~~H~GeHpRmGA~DViPfvPl~d~tteecveiske~gkrvgeel-giPVylY 126 (302)
T COG3643 52 VGD-PSKVVNAAFALIKKAAELIDMRNHKGEHPRMGAADVIPFVPLKDTTTEECVEISKELGKRVGEEL-GIPVYLY 126 (302)
T ss_pred ecC-hHHHHHHHHHHHHHHHHhhchhccCCCCCCCCccceeceeecccccHHHHHHHHHHHHHHhhHhh-CCcEEEe
Confidence 366 66899999999887 5578888888876554421 2233333333344555555555 5999963
No 176
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=21.07 E-value=2.8e+02 Score=24.93 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=30.9
Q ss_pred CccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy15259 137 NISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHET 189 (257)
Q Consensus 137 ~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~ 189 (257)
..+.|++.||.++.- -..........-+.+....++.|+ .-|.+++|--+
T Consensus 192 ~~~iVm~vGDNl~DF-~d~~~k~~~~eR~Alv~~~~~~FG--k~~Ii~pN~~Y 241 (274)
T COG2503 192 DYKIVMLVGDNLDDF-GDNAYKKAEAERRALVKQNQKKFG--KKFIILPNSMY 241 (274)
T ss_pred ccceeeEecCchhhh-cchhhhhhhHHHHHHHHHHHHHhC--ceEEEecCCcc
Confidence 789999999998533 322211222334556677778886 35777777543
No 177
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=20.97 E-value=3.3e+02 Score=23.40 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy15259 136 KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETH 190 (257)
Q Consensus 136 ~~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~lGNHD~~ 190 (257)
...|.|++.|=. ++ +. +.+..+.+.+|+.. ++||+.-+||++..
T Consensus 23 ~gtDaI~VGGS~---gv---t~----~~~~~~v~~ik~~~-~lPvilfp~~~~~i 66 (205)
T TIGR01769 23 AGTDAIMVGGSL---GI---VE----SNLDQTVKKIKKIT-NLPVILFPGNVNGL 66 (205)
T ss_pred cCCCEEEEcCcC---CC---CH----HHHHHHHHHHHhhc-CCCEEEECCCcccc
Confidence 357999998862 11 12 23445566777754 69999999999964
No 178
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.90 E-value=2.5e+02 Score=22.32 Aligned_cols=48 Identities=6% Similarity=-0.065 Sum_probs=30.4
Q ss_pred CCccEEEEcC---CCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 136 KNISMVYMTG---DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 136 ~~~dfii~TG---D~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
.++|.|++.. |.........+.+...+.++.+.+.+++..++.+|+.+
T Consensus 60 ~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 60 AKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred CCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 4689887754 44422111234566667788888888766678887765
No 179
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=20.75 E-value=3.4e+02 Score=22.59 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=30.2
Q ss_pred CccEEEEcCCCCcCcccccCHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q psy15259 137 NISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPI 183 (257)
Q Consensus 137 ~~dfii~TGD~v~H~~~~~s~~~~~~~~~~~~~~l~~~~~~~pv~~~ 183 (257)
+||.|++..-.=+= ....+.+...+.++.+.+.+++..|+++|+.+
T Consensus 89 ~pd~VvI~~G~ND~-~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 89 NPKVVVLLIGTNNI-GHTTTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred CCCEEEEEeccccc-CCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 57866554332111 11125667778888999999999998888765
No 180
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.75 E-value=2.1e+02 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHhcCCccEEEEcCCCC
Q psy15259 119 DMPLDVIRSALEQIKKHKNISMVYMTGDLV 148 (257)
Q Consensus 119 D~P~~l~~s~l~~i~~~~~~dfii~TGD~v 148 (257)
|-+.. +.+.++.+.+ ..|+||.||-.-
T Consensus 42 Dd~~~-I~~~l~~~~~--~~dliittGG~g 68 (135)
T smart00852 42 DDKEA-IKEALREALE--RADLVITTGGTG 68 (135)
T ss_pred CCHHH-HHHHHHHHHh--CCCEEEEcCCCC
Confidence 44434 4455555543 589999999855
No 181
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=20.57 E-value=91 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.5
Q ss_pred cCceEEEeecCCeEEEE
Q psy15259 231 KGGYYSFLTEKNLRIIV 247 (257)
Q Consensus 231 ~~GyYs~~~~~glriIs 247 (257)
..|+||+.+..+.|||-
T Consensus 61 ~~g~~Si~i~~~~RliF 77 (93)
T PF05015_consen 61 RKGQWSIRINGNWRLIF 77 (93)
T ss_pred CCCcEEEEeCCCEEEEE
Confidence 45999999999999974
No 182
>PLN02618 tryptophan synthase, beta chain
Probab=20.38 E-value=1.9e+02 Score=27.67 Aligned_cols=26 Identities=12% Similarity=0.418 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHh
Q psy15259 108 RATKYGHYDNCDMPLDVIRSALEQIKK 134 (257)
Q Consensus 108 ~ag~~G~y~~CD~P~~l~~s~l~~i~~ 134 (257)
..|+||.|+++=.|+.|+.. |+.+.+
T Consensus 15 ~~~~~g~~gg~~~~~~~~~~-~~~~~~ 40 (410)
T PLN02618 15 SFGRFGKFGGKYVPETLMTA-LSELEA 40 (410)
T ss_pred CCCcccCcCCEeCCHHHHHH-HHHHHH
Confidence 45899999999999777664 444544
Done!