RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15259
(257 letters)
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins,
metallophosphatase domain. Acid sphingomyelinase
(ASMase) is a ubiquitously expressed phosphodiesterase
which hydrolyzes sphingomyelin in acid pH conditions to
form ceramide, a bioactive second messenger, as part of
the sphingomyelin signaling pathway. ASMase is
localized at the noncytosolic leaflet of biomembranes
(for example the luminal leaflet of endosomes, lysosomes
and phagosomes, and the extracellular leaflet of plasma
membranes). ASMase-deficient humans develop
Niemann-Pick disease. This disease is characterized by
lysosomal storage of sphingomyelin in all tissues.
Although ASMase-deficient mice are resistant to
stress-induced apoptosis, they have greater
susceptibility to bacterial infection. The latter
correlates with defective phagolysosomal fusion and
antibacterial killing activity in ASMase-deficient
macrophages. ASMase belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 296
Score = 184 bits (469), Expect = 3e-57
Identities = 76/193 (39%), Positives = 104/193 (53%), Gaps = 13/193 (6%)
Query: 69 IIQLTDIHYDPKYLAGKTAH--CIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIR 126
+ ++DIHYDP Y G C +PLCCR + + A +G Y CD P ++
Sbjct: 1 FLHISDIHYDPLYKVGSEYSANCHSPLCCR---DESGDISPPAGPWGDY-GCDSPWRLVE 56
Query: 127 SALEQIKK-HKNISMVYMTGDLVAHAIWE-TSRAKNIEVMKVVAELFREYLGDIPVIPII 184
SALE IKK H + TGDLV H + E T + + + L ++ D PV P +
Sbjct: 57 SALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPAL 116
Query: 185 GNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLR 244
GNH+++PVN F P S SW+Y++ + W LPE A +TF KGGYYS + LR
Sbjct: 117 GNHDSYPVNQFPP-----NNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLR 171
Query: 245 IIVLNTNVYQKLN 257
+I LNTN+Y K N
Sbjct: 172 VISLNTNLYYKKN 184
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 42.4 bits (99), Expect = 6e-05
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 125 IRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPII 184
+ L ++ +V GDLV + +K+ A PV +
Sbjct: 17 LLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA--------PGPVYLVR 68
Query: 185 GNHETHPVNVFSPYFVQGPTSTSWVYESF 213
GNH+ N ++++ +
Sbjct: 69 GNHDFDSGNSELGFYLECAGLPYVLGNGD 97
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 35.3 bits (81), Expect = 0.008
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 131 QIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHE-- 188
+ + V + GDLV + A L L IPV + GNH+
Sbjct: 20 ALAAAEKPDFVLVLGDLVGDGPDP--------EEVLAAALALLLLLGIPVYVVPGNHDIL 71
Query: 189 -TH--PVNVFSPYFVQGPTSTSWVYESFIQY 216
TH P + + + E +Y
Sbjct: 72 LTHGPPYDPLDELSPDEDPGSEALLELLEKY 102
>gnl|CDD|236837 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase;
Provisional.
Length = 229
Score = 33.4 bits (77), Expect = 0.074
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 129 LEQIKKHKNISMVYMTGDLVA----HAIWETSRAK 159
+EQ+ K N+S + T D V HA+W SR +
Sbjct: 24 MEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMR 58
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related
proteins, metallophosphatase domain. GpdQ
(glycerophosphodiesterase Q, also known as Rv0805 in
Mycobacterium tuberculosis) is a binuclear
metallophosphoesterase from Enterobacter aerogenes that
catalyzes the hydrolysis of mono-, di-, and triester
substrates, including some organophosphate pesticides
and products of the degradation of nerve agents. The
GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide
phosphodiesterase activity. GpdQ and Rv0805 belong to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 240
Score = 33.3 bits (77), Expect = 0.089
Identities = 25/122 (20%), Positives = 33/122 (27%), Gaps = 46/122 (37%)
Query: 69 IIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSA 128
+ Q++D+H AS E
Sbjct: 2 LAQISDLHLRAD----------GEGALLGVDTAASLEA---------------------V 30
Query: 129 LEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLG--DIPVIPIIG 185
L I H +V +TGDL E+ E RE L IPV + G
Sbjct: 31 LAHINALHPRPDLVLVTGDLTDDGSPESY------------ERLRELLAALPIPVYLLPG 78
Query: 186 NH 187
NH
Sbjct: 79 NH 80
>gnl|CDD|224327 COG1409, Icc, Predicted phosphohydrolases [General function
prediction only].
Length = 301
Score = 33.0 bits (75), Expect = 0.11
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIP 182
+++ + L I+ ++ +TGDL E R + EL PVI
Sbjct: 20 ELLEALLAAIE-QLKPDLLVVTGDLTNDGEPEEYRR--------LKELLARLELPAPVIV 70
Query: 183 IIGNHETHPVNVFSPYFVQGPTSTSWV 209
+ GNH+ VN + V
Sbjct: 71 VPGNHDARVVNGEAFSDQFFNRYAVLV 97
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 31.7 bits (72), Expect = 0.31
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 128 ALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREY-LGDIPVIPIIGN 186
LE K+ + V + GDL ++T+ + +K+ E R IPV+ I GN
Sbjct: 32 LLEIAKEE-KVDFVLIAGDL-----FDTNN-PSPRALKLFLEALRRLKDAGIPVVVIAGN 84
Query: 187 HETHPVNVFS 196
H++ +
Sbjct: 85 HDSPSRLSEA 94
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 32.0 bits (73), Expect = 0.33
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 174 YLGDIPVIPIIGNHETHPVNVFSPYFVQGPT----STSWVYESFIQYWGWSLPESARQTF 229
+ P++ ++ T + F+ G W+ S G
Sbjct: 42 WFSLAPLLWLVRGAPTSWEGLAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVL 101
Query: 230 LKGGYYSFLT 239
L + +
Sbjct: 102 LLAAWLALFL 111
>gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins,
metallophosphatase domain. CSTP1 (complete
S-transactivated protein 1) is an uncharacterized Homo
sapiens protein with a metallophosphatase domain, that
is transactivated by the complete S protein of hepatitis
B virus. CSTP1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 262
Score = 30.7 bits (70), Expect = 0.68
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 30/133 (22%)
Query: 122 LDVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPV 180
+ + A++ I K + V + GDLV + R + + +K V DIP+
Sbjct: 33 IKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDV---LSLLDPDIPL 89
Query: 181 IPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTE 240
+ + GNH+ G T T + + +G Y+SF
Sbjct: 90 VCVCGNHDV------------GNTPTEESIKDYRDVFGDD-------------YFSFWVG 124
Query: 241 KNLRIIVLNTNVY 253
+ IVLN+ ++
Sbjct: 125 -GVFFIVLNSQLF 136
>gnl|CDD|114047 pfam05299, Peptidase_M61, M61 glycyl aminopeptidase. Glycyl
aminopeptidase is an unusual peptidase in that it has a
preference for substrates with an N-terminal glycine or
alanine. These proteins are found in Bacteria and in
Archaea.
Length = 122
Score = 29.3 bits (66), Expect = 0.77
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 198 YFVQGPTSTSWVYESFIQYWGWSLPESA----RQTFLKG 232
Y V T WVYE QYWG L + + +L
Sbjct: 31 YDVPMYTPLLWVYEGQTQYWGLVLAARSGLYSKDQYLDY 69
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.
Length = 477
Score = 30.5 bits (70), Expect = 0.81
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 149 AHAIWETSRAKNIEVMKVVAELFREYLGDIPVI 181
AHA E + + +E++++ E F +YL IPVI
Sbjct: 164 AHATEEEAEEETLEMLEIYKEFFEDYLA-IPVI 195
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase
domain. Mre11 (also known as SbcD in Escherichia coli)
is a subunit of the MRX protein complex. This complex
includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital
role in several nuclear processes including DNA
double-strand break repair, telomere length maintenance,
cell cycle checkpoint control, and meiotic
recombination, in eukaryotes. During double-strand
break repair, the MRX complex is required to hold the
two ends of a broken chromosome together. In vitro
studies show that Mre11 has 3'-5' exonuclease activity
on dsDNA templates and endonuclease activity on dsDNA
and ssDNA templates. In addition to the N-terminal
phosphatase domain, the eukaryotic MRE11 members of this
family have a C-terminal DNA binding domain (not
included in this alignment model). MRE11-like proteins
are found in prokaryotes and archaea was well as in
eukaryotes. Mre11 belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 30.0 bits (68), Expect = 1.00
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 125 IRSALEQIKKH---KNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREY-LGDIPV 180
A E+I + + + V + GDL + E ++++ E R IPV
Sbjct: 26 QFEAFEEIVELAIEEKVDFVLIAGDLFDSNN------PSPEALELLIEALRRLKEAGIPV 79
Query: 181 IPIIGNH 187
I GNH
Sbjct: 80 FIIAGNH 86
>gnl|CDD|163672 cd08165, MPP_MPPE1, human MPPE1 and related proteins,
metallophosphatase domain. MPPE1 is a functionally
uncharacterized metallophosphatase domain-containing
protein. The MPPE1 gene is located on chromosome 18 and
is a candidate susceptibility gene for Bipolar disorder.
MPPE1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 156
Score = 29.6 bits (67), Expect = 1.0
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 140 MVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYF 199
+V++ GDL W ++ + + ++ ++F D+P+ ++GNH+ + Y
Sbjct: 41 VVFVLGDLFDEGKW-STDEEWEDYVERFKKMFGHPP-DLPLHVVVGNHDIGFHYEMTTYK 98
Query: 200 VQGPTSTSWVYESFI 214
+ + FI
Sbjct: 99 L------ERFEKVFI 107
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb
receptors, which are metabotropic transmembrane
receptors for gamma-aminobutyric acid (GABA).
Ligand-binding domain of GABAb receptors, which are
metabotropic transmembrane receptors for
gamma-aminobutyric acid (GABA). GABA is the major
inhibitory neurotransmitter in the mammalian CNS and,
like glutamate and other transmitters, acts via both
ligand gated ion channels (GABAa receptors) and
G-protein coupled receptors (GABAb). GABAa receptors are
members of the ionotropic receptor superfamily which
includes alpha-adrenergic and glycine receptors. The
GABAb receptor is a member of a receptor superfamily
which includes the mGlu receptors. The GABAb receptor is
coupled to G alpha_i proteins, and activation causes a
decrease in calcium, an increase in potassium membrane
conductance, and inhibition of cAMP formation. The
response is thus inhibitory and leads to
hyperpolarization and decreased neurotransmitter
release, for example.
Length = 350
Score = 29.2 bits (66), Expect = 2.0
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 31/111 (27%)
Query: 117 NCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLG 176
CD P+ +AL+ ++ K + + S V + VAE+ E+
Sbjct: 48 KCD-PVQAASAALDLLEN-KPVVAIIGPQ---------CS-----SVAEFVAEVANEW-- 89
Query: 177 DIPVIPIIGNHETHPVNVFS-----PYFVQGPTSTSWVYE---SFIQYWGW 219
+P++ T P S PYF + S S + ++ +GW
Sbjct: 90 ---NVPVLSFAATSPS--LSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGW 135
>gnl|CDD|238401 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class
II core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
archaea, the cytoplasm of eukaryotes and some bacteria.
Length = 261
Score = 29.1 bits (66), Expect = 2.0
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 149 AHAIWETSRAKNIEVMKVVAELFREYLGDIPVI 181
AHA E + + ++++ + E + + L IPV+
Sbjct: 153 AHATEEEAEEEVLQILDLYKEFYEDLLA-IPVV 184
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 28.3 bits (63), Expect = 3.7
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIP 182
D +++ LE+++ +++TGDLVA ++EV++ V LGD V
Sbjct: 14 DELQALLERVEFDPGQDTLWLTGDLVARG------PGSLEVLRYVKS-----LGD-AVRL 61
Query: 183 IIGNHETHPVNVF 195
++GNH+ H + VF
Sbjct: 62 VLGNHDLHLLAVF 74
>gnl|CDD|143490 cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Alanine Racemase-like 1. This
subfamily is composed of uncharacterized bacterial
proteins with similarity to bacterial alanine racemases
(AR), which are fold type III PLP-dependent enzymes
containing an N-terminal PLP-binding TIM-barrel domain
and a C-terminal beta-sandwich domain. AR exists as
homodimers with active sites that lie at the interface
between the TIM barrel domain of one subunit and the
beta-sandwich domain of the other subunit. It catalyzes
the interconversion between L- and D-alanine, which is
an essential component of the peptidoglycan layer of
bacterial cell walls. Members of this subfamily may act
as PLP-dependent enzymes.
Length = 353
Score = 27.9 bits (63), Expect = 5.2
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 22/77 (28%)
Query: 104 SETDRATKYGHYDNCDMPL----DVIRS----ALEQIKKHKNISMV--------YMTGDL 147
SE + KY D+ L + I++ A +Q K HK I MV + DL
Sbjct: 83 SEVEDVVKY-----ADISLNSELETIKALSEEAKKQGKIHKIILMVDLGDLREGVLPEDL 137
Query: 148 VAHAIWETSRAKNIEVM 164
+ + E + IE++
Sbjct: 138 LD-FVEEILKLPGIELV 153
>gnl|CDD|163634 cd07391, MPP_PF1019, Pyrococcus furiosus PF1019 and related
proteins, metallophosphatase domain. This family
includes bacterial and archeal proteins homologous to
PF1019, an uncharacterized Pyrococcus furiosus protein.
The domain present in members of this family belongs to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 172
Score = 27.3 bits (61), Expect = 5.3
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 121 PLDVIRSALEQIK---KHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGD 177
P LE++ + + + GDL H+ SR + EV R D
Sbjct: 22 PRGQTEDTLERLDRLIEEYGPERLIILGDLK-HSFGGLSRQEFEEVA-----FLRLLAKD 75
Query: 178 IPVIPIIGNHETH 190
+ VI I GNH+
Sbjct: 76 VDVILIRGNHDGG 88
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 27.8 bits (62), Expect = 7.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 130 EQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAEL 170
+++ + ++MV MTG + A + AKNI KV EL
Sbjct: 143 QELAGNPKVAMVSMTGSVSAGEKIMAAAAKNI--TKVCLEL 181
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 27.0 bits (60), Expect = 9.1
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 113 GHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFR 172
G D D++R LE+I N ++++ GD V + + ++V+ L
Sbjct: 8 GCLD------DLLR-LLEKIGFPPNDKLIFL-GDYVD---------RGPDSVEVIDLLLA 50
Query: 173 EYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESF 213
+ VI + GNHE +N ++ + +
Sbjct: 51 LKILPDNVILLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLK 91
>gnl|CDD|223182 COG0104, PurA, Adenylosuccinate synthase [Nucleotide transport and
metabolism].
Length = 430
Score = 27.2 bits (61), Expect = 9.6
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVI 181
+ +R LE++ ++KN +V G ++ AE + Y+ D+ V+
Sbjct: 156 ETLREKLERLLEYKNFQLVKYYG------AEAVDFEDILDEYYEYAERLKPYVTDVSVL 208
>gnl|CDD|235208 PRK04036, PRK04036, DNA polymerase II small subunit; Validated.
Length = 504
Score = 27.2 bits (61), Expect = 10.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 167 VAELFREYLGDIPVIPIIGNHE 188
AE ++ DI +I GNH+
Sbjct: 320 AAEYLKQIPEDIKIIISPGNHD 341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,041,385
Number of extensions: 1186291
Number of successful extensions: 1188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1181
Number of HSP's successfully gapped: 37
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)