RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15259
(257 letters)
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 70.2 bits (171), Expect = 4e-14
Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 27/203 (13%)
Query: 54 APSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYG 113
+ + +S++ TD+HY L ++ G
Sbjct: 27 TEKITAPIEKDRNLSMVVTTDVHYFAPSLTDN-----------------GKAFEKYVAAG 69
Query: 114 HYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFRE 173
++ + L ++ K ++ ++GDL + + + +A+ +
Sbjct: 70 DGKQLAYSDEITDAFLADVESKK-TDVLIISGDLTNNGEKTS--------HEELAKKLTQ 120
Query: 174 YLG-DIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKG 232
V + GNH+ + + + + F + + E A +
Sbjct: 121 VEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYSDFGYEDAISSDEFS 180
Query: 233 GYYSFLTEKNLRIIVLNTNVYQK 255
Y + +++L+T +Y+
Sbjct: 181 LSYLAAPSSKVWLLMLDTAIYKT 203
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 56.5 bits (135), Expect = 1e-09
Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 40/190 (21%)
Query: 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMP 121
+ + + D+ Y D + + +Y Y
Sbjct: 1 SEDPVFTFGLIADVQY-------------------ADIEDGENYLRTRRRY--YRGS--- 36
Query: 122 LDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVI 181
D++R A+ Q ++ + + V GD++ R + + V + V
Sbjct: 37 ADLLRDAVLQWRRER-VQCVVQLGDIIDG--HNRRRDASDRALDTVMAELDAC--SVDVH 91
Query: 182 PIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEK 241
+ GNHE + + S + + Y F
Sbjct: 92 HVWGNHEFY-----------NFSRPSLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAP 140
Query: 242 NLRIIVLNTN 251
N R ++L+
Sbjct: 141 NFRFVLLDAY 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-07
Identities = 50/288 (17%), Positives = 82/288 (28%), Gaps = 112/288 (38%)
Query: 50 DRITAPSE--SRYLA----------SGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRV 97
D T P+E ++L G ++ L ++ YL G H +A +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 98 DQPNASSETDRATKYGHYDNCDM---PLD-VIRSALEQIKKHKNISMVYMTG-------- 145
+ + Y M P D SAL + N +V + G
Sbjct: 112 NDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 146 --DLVAHAIWETSRAKNIEVMKVVAELFRE------------------------------ 173
+L +++T +++K AE E
Sbjct: 170 FEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 174 --YLGDIPV-IPIIG------------NHETHPVNVFSPYFVQGPT-------------- 204
YL IP+ P+IG P + S +++G T
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAE 285
Query: 205 STSWVYESFIQ---------YW-GW---------SLPESARQTFLKGG 233
+ SW ESF ++ G SLP S + L+
Sbjct: 286 TDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Score = 38.1 bits (88), Expect = 0.003
Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 84/200 (42%)
Query: 53 TAPSESRYLASGDEIS--IIQLTDI-HYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRA 109
P + YL S IS +I + + HY + ++
Sbjct: 224 NTPDKD-YLLSI-PISCPLIGVIQLAHY-----------VVT---AKL------------ 255
Query: 110 TKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAI-----WETSRAKNIEVM 164
G + ++ ++ A + G + A AI WE S + V
Sbjct: 256 --LG-FTPGEL-RSYLKGAT-----------GHSQGLVTAVAIAETDSWE-SFFVS--VR 297
Query: 165 KVVAELFREYLGDIPVIPIIG--NHETHPVNVFSPYFVQ--------GPT--------ST 206
K + LF IG +E +P P ++ P+ +
Sbjct: 298 KAITVLF-----------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 207 SWVYESFIQYWGWSLPESAR 226
V + ++ LP +
Sbjct: 347 EQV-QDYVNKTNSHLPAGKQ 365
Score = 29.2 bits (65), Expect = 1.5
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 52 ITAPSESRYLASGDEISIIQLT--DIHYDPKYLA 83
+ +P S L ++ L ++ ++ K +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
{Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Length = 426
Score = 40.5 bits (94), Expect = 4e-04
Identities = 23/153 (15%), Positives = 38/153 (24%), Gaps = 20/153 (13%)
Query: 103 SSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNI- 161
D +G + D + + V GDL W
Sbjct: 120 KPGPDVPYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWD 179
Query: 162 EVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWG-WS 220
+ P I GNHE Y+ F+ + +
Sbjct: 180 TWGRFSERSVAY----QPWIWTAGNHEIDYAPDIGE------------YQPFVPFTNRYP 223
Query: 221 LPESARQTFLKGGYYSFLTEKNLRIIVLNTNVY 253
P A + +Y+ + IIVL++
Sbjct: 224 TPHEASGSG-DPLWYAI-KRASAHIIVLSSYSG 254
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 39.8 bits (93), Expect = 4e-04
Identities = 22/189 (11%), Positives = 49/189 (25%), Gaps = 73/189 (38%)
Query: 69 IIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSA 128
+ ++D H+ YG D
Sbjct: 3 LAHISDTHFRS---------------------------RGEKLYGFID----VNAANADV 31
Query: 129 LEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLG--DIPVIPIIG 185
+ Q+ + V ++GD+V E ++ R+ LG + P+ I G
Sbjct: 32 VSQLNALRERPDAVVVSGDIVNCGRPEE------------YQVARQILGSLNYPLYLIPG 79
Query: 186 NHETHPV--NVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNL 243
NH+ + P Q + + + +
Sbjct: 80 NHDDKALFLEYLQPLCPQLGSDANNM------------------------RCAVDD-FAT 114
Query: 244 RIIVLNTNV 252
R++ ++++
Sbjct: 115 RLLFIDSSR 123
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 39.9 bits (93), Expect = 5e-04
Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 69/194 (35%)
Query: 62 ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMP 121
+ ++ ++D H YG D
Sbjct: 21 HPRPDYVLLHISDTHLIG---------------------------GDRRLYGAVD----A 49
Query: 122 LDVIRSALEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLG--DI 178
D + LEQ+ + + TGDL + + L +
Sbjct: 50 DDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAA--------YRKLRGLVEPFAAQLGA 101
Query: 179 PVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFL 238
++ ++GNH+ ++ P
Sbjct: 102 ELVWVMGNHD--------------------DRAELRKFLLDEAPSM-------APLDRVC 134
Query: 239 TEKNLRIIVLNTNV 252
LRIIVL+T+V
Sbjct: 135 MIDGLRIIVLDTSV 148
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG;
2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB:
2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Length = 424
Score = 33.5 bits (76), Expect = 0.065
Identities = 25/153 (16%), Positives = 41/153 (26%), Gaps = 20/153 (13%)
Query: 103 SSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWET-SRAKNI 161
+ D +G + D + K V GDL + +
Sbjct: 113 QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWD 172
Query: 162 EVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWG-WS 220
+ P I GNHE + E F + +
Sbjct: 173 TWGRFTERSVAY----QPWIWTAGNHEIEFAPEINE------------TEPFKPFSYRYH 216
Query: 221 LPESARQTFLKGGYYSFLTEKNLRIIVLNTNVY 253
+P A Q+ +YS + IIVL++
Sbjct: 217 VPYEASQST-SPFWYSI-KRASAHIIVLSSYSA 247
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.12
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 121 PLDVIRSALEQIKKHKNISMVYMTGD----LVAHAIWETSRAKNIE 162
P +R AL +++ KN+ + + G + + + ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQ 177
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 29.4 bits (66), Expect = 1.00
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 21/78 (26%)
Query: 113 GHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFR 172
G Y L + L+ I ++ GDLV A+N+E ++++
Sbjct: 23 GCYT----NL---MNKLDTIGFDNKKDLLISVGDLVDR------GAENVECLELITFP-- 67
Query: 173 EYLGDIPVIPIIGNHETH 190
+ GNHE
Sbjct: 68 ------WFRAVRGNHEQM 79
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 29.0 bits (66), Expect = 1.3
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 77 YDPKYLAGKTAHCIAPL 93
Y+ KY T + L
Sbjct: 207 YNAKYDDASTIEEVIEL 223
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 168 AELFREYLGDIPVIPIIGNHETHPVNVF 195
AE F+ Y D P++ + G T+PV ++
Sbjct: 252 AEKFQRYFNDAPLLAVPG--RTYPVELY 277
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
2bq8_X 1qfc_A* 1qhw_A*
Length = 313
Score = 28.5 bits (63), Expect = 2.3
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 5/113 (4%)
Query: 113 GHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLV-AHAIWETSRAKNIEVMKVVAELF 171
+ A+ K + GD + + + E +
Sbjct: 19 PNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFE--DVFS 76
Query: 172 REYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPES 224
L ++P + GNH+ S S W + S + +P S
Sbjct: 77 DPSLRNVPWHVLAGNHDHL--GNVSAQIAYSKISKRWNFPSPYYRLRFKIPRS 127
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 15/78 (19%)
Query: 110 TKYGHYDNCDMPLDVIRS---ALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKV 166
T+YGH+ C MP + + I + K+ V +G + + E
Sbjct: 47 TQYGHWTGCVMPASHLTDIVQGIADIDRLKDCDAVL-SGYIG-----------SPEQGSH 94
Query: 167 VAELFREYLGDIPVIPII 184
+ + P
Sbjct: 95 ILAAVAQVKQANPDAWYF 112
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 27.9 bits (63), Expect = 3.1
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 176 GDIPVIPIIGNHETHPVNVFSPY 198
G +P E P++ SPY
Sbjct: 124 GQADTLPT---PEDSPLSPRSPY 143
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Length = 288
Score = 28.0 bits (63), Expect = 3.1
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 114 HYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVM--K----VV 167
+ +PL +R+ I +M + + + + + ++ + +
Sbjct: 55 NAAAKVIPLASLRTGFGVIAA--KFTMGW--------HMRDRETRRKVMLLVSQSDHCLA 104
Query: 168 AELFREYLGDIPV-IP-IIGNHETH 190
L+R +GD+ + I+ NH
Sbjct: 105 DILYRWRVGDLHMIPTAIVSNHPRE 129
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 27.7 bits (62), Expect = 3.3
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 26/88 (29%)
Query: 114 HYDNCDMPLDVI----------RSALEQIKKHKNISMVYMTGDLVAHAIWETSR-AKNIE 162
N + ++ L + + + GDLV + +
Sbjct: 13 TLPNVTGRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVN-------KGPDSFG 65
Query: 163 VMKVVAELFREYLGDIPVIPIIGNHETH 190
V+ L + ++GNH+
Sbjct: 66 VV--------RLLKRLGAYSVLGNHDAK 85
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 19/80 (23%)
Query: 110 TKYGHYDNCDMPLDVIRS---ALEQIKKHKNISMVY--MTGDLVAHAIWETSRAKNIEVM 164
Y + +P + AL++ + + V G +
Sbjct: 58 PHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMG--------------TASQI 103
Query: 165 KVVAELFREYLGDIPVIPII 184
K++AE D P + I+
Sbjct: 104 KILAEWLTALRKDHPDLLIM 123
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 27.5 bits (60), Expect = 5.0
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 164 MKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWS 220
+K++ E + VI G T P F + + YW ++
Sbjct: 102 VKMLEEAQSLNIPVFLVIMSAGERNTVPPEWLDEQFQKYSVLKGVLNIE--NYWIYN 156
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 27.1 bits (61), Expect = 5.3
Identities = 4/23 (17%), Positives = 6/23 (26%), Gaps = 3/23 (13%)
Query: 176 GDIPVIPIIGNHETHPVNVFSPY 198
D +P +E Y
Sbjct: 114 SDETSLPW---NEKELPLPDLMY 133
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 26.3 bits (58), Expect = 6.1
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 20 CGTVLENSN------CSVKNGPQVDWQVD---TNYGTKV-DRITAPSESRYLASGDEISI 69
C L N + + G + ++ TN GT + + + ++ L+ GDEI++
Sbjct: 46 CDYHLGNISRLSNKHFQILLGEDGNLLLNDISTN-GTWLNGQKVEKNSNQLLSQGDEITV 104
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 27.1 bits (61), Expect = 6.3
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 176 GDIPVIPIIGNHETHPVNVFSPY 198
GD VIP E P S Y
Sbjct: 118 GDADVIPT---PEEEPYKPISVY 137
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 26.4 bits (58), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 43 TNYGTKVDRITAPSESRYLASGDEISI 69
N GT V+R P ++ + +GDEI I
Sbjct: 107 LN-GTYVNR--EPRNAQVMQTGDEIQI 130
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 27.1 bits (59), Expect = 6.5
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 175 LGDIPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWS 220
+ I P + P+ +Q S I+Y+ W
Sbjct: 79 FCGTLHVSFITPS--FPTDGTHPFVIQMRPDLKGALLSLIEYYQWD 122
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 26.4 bits (59), Expect = 8.2
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 170 LFREYLGDIPV-IP-IIGNHETH 190
L+R LG++ + + II NH
Sbjct: 106 LYRHRLGELDMEVVGIISNHPRE 128
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein; periplasmic binding protein, cellulose,
thermophilic proteins; HET: CBI; 1.50A {Thermotoga
maritima} PDB: 2o7j_A* 3i5o_A*
Length = 592
Score = 26.7 bits (59), Expect = 9.5
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 146 DLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNHETHPVNVFSPYFVQGPTS 205
+L+ A+ + + ++ D+P IP + + + Y++ P+
Sbjct: 473 ELLDKAVSTLDPEVRKQAYFRIQQIIYR---DMPSIPAFYTAHWYEYS--TKYWINWPSE 527
Query: 206 TSWVYESFIQYWGWSLP 222
+ + + + P
Sbjct: 528 DNPAWFRPSPWHADAWP 544
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,014,771
Number of extensions: 229488
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 38
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)