RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15259
         (257 letters)



>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
           zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
          Length = 320

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 40/187 (21%)

Query: 67  ISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIR 126
            +   + D+ Y                           E    T+  +Y       D++R
Sbjct: 4   FTFGLIADVQYADIE---------------------DGENYLRTRRRYYRGS---ADLLR 39

Query: 127 SALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGN 186
            A+ Q ++   +  V   GD++        R  +   +  V          + V  + GN
Sbjct: 40  DAVLQWRRE-RVQCVVQLGDIIDG--HNRRRDASDRALDTVMAELDAC--SVDVHHVWGN 94

Query: 187 HETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRII 246
           HE +  +  S    +  ++     ++     G                Y F    N R +
Sbjct: 95  HEFYNFSRPSLLSSRLNSAQRTGTDTGSDLIGDD-----------IYAYEFSPAPNFRFV 143

Query: 247 VLNTNVY 253
           +L+    
Sbjct: 144 LLDAYDL 150


>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
           {Enterobacter aerogenes [TaxId: 548]}
          Length = 271

 Score = 32.8 bits (73), Expect = 0.027
 Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 44/154 (28%)

Query: 69  IIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSA 128
           +  ++D H+                                  YG  D            
Sbjct: 3   LAHISDTHFRS---------------------------RGEKLYGFID----VNAANADV 31

Query: 129 LEQIKK-HKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYLGDIPVIPIIGNH 187
           + Q+    +    V ++GD+V     E          +V  ++      + P+  I GNH
Sbjct: 32  VSQLNALRERPDAVVVSGDIVNCGRPEE--------YQVARQILGSL--NYPLYLIPGNH 81

Query: 188 ETHPV--NVFSPYFVQGPTSTSWVYESFIQYWGW 219
           +   +      P   Q  +  + +  +   +   
Sbjct: 82  DDKALFLEYLQPLCPQLGSDANNMRCAVDDFATR 115


>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus
           thermophilus [TaxId: 274]}
          Length = 292

 Score = 28.2 bits (62), Expect = 1.0
 Identities = 13/174 (7%), Positives = 33/174 (18%), Gaps = 22/174 (12%)

Query: 80  KYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNC-----------------DMPL 122
           + +     + +A L          +E          +N                      
Sbjct: 65  QRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGF 124

Query: 123 DVIRSALEQIKKHKNISMVYMTGDLVAHAIWETSRAKNIEVMKVVAELFREYL-----GD 177
                 +  I++     +               S   ++   K   E   ++       +
Sbjct: 125 RYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFN 184

Query: 178 IPVIPIIGNHETHPVNVFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLK 231
                                    P ++      F +  G S+P        +
Sbjct: 185 NAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLER 238


>d2nrac2 a.4.5.10 (C:152-268) Replication initiation protein PI
           {Escherichia coli [TaxId: 562]}
          Length = 117

 Score = 25.7 bits (56), Expect = 3.6
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 90  IAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVY 142
           +  L   +       + +   KY  +       DV+  A+ +IKK   IS V 
Sbjct: 44  VDELKEELIAYTFDKDGNIEYKYPDFPIFKR--DVLNKAIAEIKKKTEISFVG 94


>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 298

 Score = 26.2 bits (57), Expect = 4.3
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 10  QGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISI 69
            G  L P  +  +   + +     G        +  GTK   +       +L  GDE+ I
Sbjct: 218 NGCNLRPGDLLASGTISGSDPESFG---SMLELSWKGTKAIDVGQGQTRTFLLDGDEVII 274


>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
           O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
          Length = 213

 Score = 25.3 bits (54), Expect = 7.8
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 95  CRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKNISMVYMTGDLVAHAIWE 154
                 +        + Y          +V  +   Q+K+          G ++     +
Sbjct: 128 VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEG---------GRVIVPINLK 178

Query: 155 TSRAKNIEVMKVV-AELFREYLGDIPVIPIIGNH 187
            SR +   + K     L   Y  +   I   GN 
Sbjct: 179 LSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNL 212


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,005,220
Number of extensions: 45754
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 11
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)