Query psy15260
Match_columns 128
No_of_seqs 129 out of 1116
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:27:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.3E-41 4.4E-46 288.3 6.3 120 1-120 398-529 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 2E-41 6.7E-46 290.2 7.0 120 1-120 464-599 (784)
3 4anj_A Unconventional myosin-V 100.0 7.3E-41 2.5E-45 292.9 7.3 120 1-120 468-603 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1.3E-40 4.3E-45 285.4 7.4 119 1-120 449-574 (795)
5 1w9i_A Myosin II heavy chain; 100.0 1.5E-40 5.1E-45 283.9 7.2 120 1-120 466-594 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 2.4E-40 8.2E-45 283.1 6.9 119 1-120 473-603 (783)
7 1kk8_A Myosin heavy chain, str 100.0 6.8E-40 2.3E-44 282.1 7.0 119 1-120 472-604 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.2E-39 4.2E-44 286.5 7.4 119 1-120 449-574 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.1E-39 3.7E-44 285.1 6.4 120 1-120 445-575 (995)
10 1g8x_A Myosin II heavy chain f 100.0 4.6E-39 1.6E-43 281.3 7.4 120 1-120 466-594 (1010)
11 1i84_S Smooth muscle myosin he 100.0 5.5E-39 1.9E-43 284.5 6.0 120 1-120 476-606 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 23.5 21 0.00071 20.3 0.4 27 42-68 24-50 (53)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-41 Score=288.32 Aligned_cols=120 Identities=33% Similarity=0.463 Sum_probs=110.8
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCccccccCChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVKL 80 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~kl 80 (128)
||||||||||||||++|++++|..|+++|.+|||.|..++|.||++|+|||+++|.|||+||||||++|++||++|++|+
T Consensus 398 FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl 477 (697)
T 1lkx_A 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSI 477 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc---Cccccc---------cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 81 YLT---NPAQTT---------LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 81 ~~~---~~~~~~---------~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
+.. ||...+ ....|+|+||||+|+|++.+|++||||.|++
T Consensus 478 ~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~ 529 (697)
T 1lkx_A 478 CKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFG 529 (697)
T ss_dssp HHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCH
T ss_pred HHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccH
Confidence 874 332221 1468999999999999999999999999875
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2e-41 Score=290.20 Aligned_cols=120 Identities=27% Similarity=0.427 Sum_probs=110.1
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCccccccCChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVKL 80 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~kl 80 (128)
||||||||||||||++|++++|..|+++|.+|||.|..|+|.||++|+|||+++|.|||+||||||++|+++|++|++|+
T Consensus 464 FEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl 543 (784)
T 2v26_A 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAV 543 (784)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccc---c-------------cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 81 YLTNPAQT---T-------------LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 81 ~~~~~~~~---~-------------~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
+..+.... . ....|+|+||||+|+|++.+|++||||.|++
T Consensus 544 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~ 599 (784)
T 2v26_A 544 HQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHM 599 (784)
T ss_dssp HHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCH
T ss_pred HHHhCCCcccccCCCccccccccccCCCceEeeecCccEeeeccCHHHhccchhhH
Confidence 87543211 0 1247999999999999999999999998875
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=7.3e-41 Score=292.93 Aligned_cols=120 Identities=27% Similarity=0.429 Sum_probs=110.5
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCccccccCChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVKL 80 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~kl 80 (128)
|||||||||||+||++|++++|..|+++|.+|||.|..|+|.||++|+|||+++|.|||+||||||++|++||++|++|+
T Consensus 468 FEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl 547 (1052)
T 4anj_A 468 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAV 547 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcc---ccc-------------cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 81 YLTNPA---QTT-------------LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 81 ~~~~~~---~~~-------------~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
+..+.. ... ....|+|+||||+|+|++.+|++||||.|++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~ 603 (1052)
T 4anj_A 548 HQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHM 603 (1052)
T ss_dssp HHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCH
T ss_pred HHHhccCccccCCcccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccH
Confidence 876432 111 1235999999999999999999999999976
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.3e-40 Score=285.42 Aligned_cols=119 Identities=37% Similarity=0.539 Sum_probs=109.8
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCccccccCChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVKL 80 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~kl 80 (128)
||||||||||||||++|++++|..||++|.+|||+|..++|.||++|+|||+++ .|||+||||||++|+++|++|++|+
T Consensus 449 FEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl 527 (795)
T 1w7j_A 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKL 527 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred hcc----Cccccc---cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 81 YLT----NPAQTT---LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 81 ~~~----~~~~~~---~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
+.. ||...+ ....|+|+||||+|+|++.+|++||||.|++
T Consensus 528 ~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~ 574 (795)
T 1w7j_A 528 YNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYE 574 (795)
T ss_dssp HHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCH
T ss_pred HHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccH
Confidence 764 343322 2468999999999999999999999999875
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.5e-40 Score=283.89 Aligned_cols=120 Identities=36% Similarity=0.571 Sum_probs=109.6
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCcccccc-CChHHHHHHHhcC-CCcccccchhhhhccCCCchhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAKSLGPLRAYTRV 78 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~~-p~Gll~lLDee~~~p~~td~~f~~ 78 (128)
||||||||||||||++|++++|..|+++|.+|||.|..++| .||++|+|||+++ |.|||+||||||++|++||++|++
T Consensus 466 FEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~ 545 (770)
T 1w9i_A 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLIT 545 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHH
Confidence 79999999999999999999999999999999999999999 5999999999984 999999999999999999999999
Q ss_pred hhhc----cCcccccc---ccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 79 KLYL----TNPAQTTL---LCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 79 kl~~----~~~~~~~~---~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
||+. .||...+. ...|+|+||||+|+|++.+|++||||.|++
T Consensus 546 kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~ 594 (770)
T 1w9i_A 546 KLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594 (770)
T ss_dssp HHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCH
T ss_pred HHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccH
Confidence 9754 34543332 268999999999999999999999999975
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2.4e-40 Score=283.12 Aligned_cols=119 Identities=34% Similarity=0.568 Sum_probs=107.3
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCcccccc-CChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVK 79 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~k 79 (128)
||||||||||||||++|++++|+.||++|.+|||.|..++| .||++|+|||++ |.|||+||||||++|++||++|++|
T Consensus 473 FEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~k 551 (783)
T 4db1_A 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAK 551 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHH
Confidence 78999999999999999999999999999999999999999 599999999996 8999999999999999999999999
Q ss_pred hhcc----Cccccc-------cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 80 LYLT----NPAQTT-------LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 80 l~~~----~~~~~~-------~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
|+.. ||...+ ....|+|+||||+|+|++.+|++||||.|++
T Consensus 552 l~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~ 603 (783)
T 4db1_A 552 LFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNE 603 (783)
T ss_dssp HHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCH
T ss_pred HHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccH
Confidence 9753 343322 2357999999999999999999999999875
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=6.8e-40 Score=282.09 Aligned_cols=119 Identities=37% Similarity=0.594 Sum_probs=108.4
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCcccccc-CChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVK 79 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~k 79 (128)
|||||||||||+||++|++++|..|+++|.+|||.|..++| .||++|+|||++ |.|||+||||||++|++||++|++|
T Consensus 472 FEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~k 550 (837)
T 1kk8_A 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDK 550 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHH
Confidence 79999999999999999999999999999999999999999 599999999997 8999999999999999999999999
Q ss_pred hhc----cCccccc---------cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 80 LYL----TNPAQTT---------LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 80 l~~----~~~~~~~---------~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
|+. .||...+ ....|+|+||||+|+|++.+|++||||.|++
T Consensus 551 l~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~ 604 (837)
T 1kk8_A 551 LYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINE 604 (837)
T ss_dssp HHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCH
T ss_pred HHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccH
Confidence 753 3443322 2458999999999999999999999999875
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.2e-39 Score=286.53 Aligned_cols=119 Identities=37% Similarity=0.539 Sum_probs=109.7
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCccccccCChHHHHHHHhcCCCcccccchhhhhccCCCchhhhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSLGPLRAYTRVKL 80 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldli~~~p~Gll~lLDee~~~p~~td~~f~~kl 80 (128)
|||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||+++ .|||+||||||++|++||++|++|+
T Consensus 449 FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl 527 (1080)
T 2dfs_A 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKL 527 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred hcc----Cccccc---cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 81 YLT----NPAQTT---LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 81 ~~~----~~~~~~---~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
+.. ||...+ ....|+|+||||+|+|++.||++||+|.|++
T Consensus 528 ~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~ 574 (1080)
T 2dfs_A 528 YNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYE 574 (1080)
T ss_dssp HHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCH
T ss_pred HHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccH
Confidence 764 343322 2468999999999999999999999998875
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.1e-39 Score=285.11 Aligned_cols=120 Identities=33% Similarity=0.494 Sum_probs=109.6
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCcccccc-CChHHHHHHHhc--CCCcccccchhhhhccCCCchhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKSLGPLRAYTR 77 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~--~p~Gll~lLDee~~~p~~td~~f~ 77 (128)
|||||||||||+||++|++++|..|+++|.+|||.|..|+| .||++|+|||++ +|.|||+||||||++|++||++|+
T Consensus 445 fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~ 524 (995)
T 2ycu_A 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFV 524 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHH
Confidence 79999999999999999999999999999999999999999 699999999998 489999999999999999999999
Q ss_pred hhhhcc---Cccccc-----cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 78 VKLYLT---NPAQTT-----LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 78 ~kl~~~---~~~~~~-----~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
+|++.. ||...+ ....|+|+||||+|+|++.+|++||||.|++
T Consensus 525 ~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~ 575 (995)
T 2ycu_A 525 EKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLND 575 (995)
T ss_dssp HHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCH
T ss_pred HHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccH
Confidence 998764 343322 2468999999999999999999999999864
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=4.6e-39 Score=281.35 Aligned_cols=120 Identities=36% Similarity=0.564 Sum_probs=109.5
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCcccccc-CChHHHHHHHhc-CCCcccccchhhhhccCCCchhhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKSLGPLRAYTRV 78 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~-~p~Gll~lLDee~~~p~~td~~f~~ 78 (128)
|||||||||||+||++|++++|..|+++|.+|||.|..++| .||++|+|||++ +|.|||+||||||++|++||++|++
T Consensus 466 fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~ 545 (1010)
T 1g8x_A 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLIT 545 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHH
Confidence 78999999999999999999999999999999999999999 599999999998 4999999999999999999999999
Q ss_pred hhhcc----Ccccccc---ccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 79 KLYLT----NPAQTTL---LCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 79 kl~~~----~~~~~~~---~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
|+... ||...+. ...|+|+||||+|+|++.||++||||.|++
T Consensus 546 kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~ 594 (1010)
T 1g8x_A 546 KLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594 (1010)
T ss_dssp HHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCH
T ss_pred HHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccH
Confidence 98753 4433221 358999999999999999999999999875
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=5.5e-39 Score=284.53 Aligned_cols=120 Identities=33% Similarity=0.484 Sum_probs=108.7
Q ss_pred CccchhhhhhHHHHHHHHHHHhHhHHHHHhhhCCCcccccc-CChHHHHHHHhcC--CCcccccchhhhhccCCCchhhh
Q psy15260 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAKSLGPLRAYTR 77 (128)
Q Consensus 1 feqlciN~~nE~Lq~~~~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldli~~~--p~Gll~lLDee~~~p~~td~~f~ 77 (128)
|||||||||||+||++|++++|..|+++|.+|||.|..|+| .||++|+|||+++ |.|||+||||||++|++||.+|+
T Consensus 476 feQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~ 555 (1184)
T 1i84_S 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFV 555 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHH
Confidence 78999999999999999999999999999999999999999 6999999999963 34999999999999999999999
Q ss_pred hhhhcc---Cccccc-----cccceeEEeEEeecccccccHHHHhcccCCC
Q psy15260 78 VKLYLT---NPAQTT-----LLCQYLLSLARYDQNYDIRDRARLLRQLLFP 120 (128)
Q Consensus 78 ~kl~~~---~~~~~~-----~~~~f~i~H~~g~V~Y~~~~f~~kN~D~l~~ 120 (128)
.|++.. ||...+ ....|+|+||||+|+|++.||++||+|.|++
T Consensus 556 ~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~ 606 (1184)
T 1i84_S 556 EKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLND 606 (1184)
T ss_dssp HHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCH
T ss_pred HHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccH
Confidence 999865 343322 2458999999999999999999999999875
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=23.47 E-value=21 Score=20.25 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred CChHHHHHHHhcCCCcccccchhhhhc
Q psy15260 42 SDNTLCLQLVEGKPNGLLCVLDDQAKS 68 (128)
Q Consensus 42 ~dn~~~ldli~~~p~Gll~lLDee~~~ 68 (128)
..|...+|++..+..|+=..|.|+|-+
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchhc
Confidence 357888999988888998899999876
Done!