RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15260
(128 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 127 bits (321), Expect = 2e-35
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 61 VLDDQAK 67
+LD++ +
Sbjct: 524 ILDEENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 124 bits (315), Expect = 1e-34
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 61 VLDDQ 65
+LD+
Sbjct: 458 LLDEA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 121 bits (305), Expect = 3e-33
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 61 VLDDQ 65
+LD++
Sbjct: 508 LLDEE 512
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 120 bits (303), Expect = 4e-33
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 61 VLDDQ 65
+LD++
Sbjct: 508 LLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 116 bits (292), Expect = 1e-31
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 58
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 59 LCVLDDQ 65
L +LD+Q
Sbjct: 526 LALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 115 bits (290), Expect = 3e-31
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 59
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 60 CVLDDQ 65
+L+++
Sbjct: 532 SILEEE 537
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 115 bits (289), Expect = 4e-31
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 57
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 58 LLCVLDDQ 65
LL +LD++
Sbjct: 505 LLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 114 bits (288), Expect = 5e-31
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 58
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 59 LCVLDDQ 65
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 114 bits (287), Expect = 6e-31
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 59
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 60 CVLDDQ 65
+L+++
Sbjct: 531 SILEEE 536
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 110 bits (277), Expect = 1e-29
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNG 57
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 58 LLCVLDDQAK 67
+L +LD++
Sbjct: 536 VLALLDEECW 545
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 52.1 bits (125), Expect = 4e-09
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 78 VKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 122
VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 489 VKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 1e-04
Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 28/127 (22%)
Query: 7 NYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-------PNGLL 59
Y H+ + H+ E E R F L + +E K N
Sbjct: 471 QYFYSHIGH----HLKNIEHPE--------RMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 60 CVLDDQAKSLGPLRAYTRVKLYLT--NPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQL 117
+L+ L L+ Y K Y+ +P L+ L L + ++N LLR
Sbjct: 519 SILNT----LQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 118 LFPAPGA 124
L A
Sbjct: 572 LMAEDEA 578
Score = 31.0 bits (69), Expect = 0.11
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 11 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 64
E LQ Q + + I+ R L + N LL VL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.37
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 65 QAKSLGPLRAYTRVKLYLTN--PA---QTTL 90
+ ++L L+A +KLY + PA + T+
Sbjct: 18 EKQALKKLQA--SLKLYADDSAPALAIKATM 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 26.8 bits (59), Expect = 2.2
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 48 LQLVEGKPNGLLCVLDDQAKSLGPLRAY---TRVKLYLTNPAQTTLLCQYLLSLARYDQN 104
+Q+ E + +L + S R Y +KL + + ++S+ +
Sbjct: 503 IQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKK-VVSIYGSSID 561
Query: 105 YDIRDRARLLRQLL 118
+++ RA L
Sbjct: 562 VELQQRAVEYNALF 575
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 2.9
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 10 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 43
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like
domains; structural genomics; HET: MSE CSX; 1.90A
{Anabaena variabilis atcc 29413}
Length = 365
Score = 25.9 bits (57), Expect = 4.8
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 82 LTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAP 122
T+P T + + L +Y+Q R R + P P
Sbjct: 317 YTDPIATAIFKEIYKDLVKYEQRLVSLYRTRTNATVQPPKP 357
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide
cyclase,stereoselectivity, aklavino biosynthetic
protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP:
d.17.4.9 PDB: 2f98_A*
Length = 153
Score = 25.3 bits (55), Expect = 6.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 103 QNYDIRDRARLLRQLLFPAPGAEN 126
+ D D RQL P P E+
Sbjct: 127 HHRDWPDYQGTYRQLGEPWPETEH 150
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 25.4 bits (55), Expect = 6.8
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 56 NGLLCVLDDQAKSLGPLRAYTRVKLY----LTNPAQTTLLCQYLLSLARYDQNY 105
L C + + Y+ + + + + + Q + SL R +
Sbjct: 170 ARLGCEAAGLQLGIALTQHYSELTNIFGDNIGSLQEKGIKLQGIASLYRTNITE 223
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 25.3 bits (55), Expect = 6.9
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI----EFSDNTLCLQLVEGKPN 56
Q+ IN + +Q Y + VF+ Q E + EF + L P
Sbjct: 465 VIQIVINR--DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGN--LIAGDPRSSPL 520
Query: 57 GLLCVLDDQAKSLGP---LRAYTRVKLYLTNPAQTTLLCQYLLSLARYDQ--NYDIRDRA 111
+L + + ++ + Q +L + + +++ RA
Sbjct: 521 IQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRA 580
Query: 112 RLLRQLLFPAPGA 124
+L A
Sbjct: 581 VEYLRLSTVASTD 593
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 24.6 bits (53), Expect = 9.3
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 24 YEQEEYNKEGIRWRHIEFSD 43
Y+ GI F D
Sbjct: 59 YDATLVKSRGIDVHSWPFDD 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.427
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,917,227
Number of extensions: 97371
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 27
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)