RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15260
         (128 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 73.6 bits (180), Expect = 5e-17
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449

Query: 61  VLDDQ 65
           +LD+ 
Sbjct: 450 LLDEA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 34/81 (41%), Positives = 46/81 (56%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+  
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485

Query: 61  VLDDQAKSLGPLRAYTRVKLY 81
           +L+++           + KLY
Sbjct: 486 ILEEECMFPKATDTSFKNKLY 506


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 67.5 bits (164), Expect = 7e-15
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 57
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 398 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 457

Query: 58  LLCVLDDQ 65
           +L +LD++
Sbjct: 458 VLALLDEE 465


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 67.4 bits (164), Expect = 7e-15
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L 
Sbjct: 424 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483

Query: 61  VLDDQ 65
           +L+++
Sbjct: 484 ILEEE 488


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 65.9 bits (160), Expect = 2e-14
 Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445

Query: 61  VLDDQ 65
           +LD++
Sbjct: 446 LLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 62.8 bits (152), Expect = 3e-13
 Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 58
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G+
Sbjct: 419 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478

Query: 59  LCVLDDQ 65
           L +LD+Q
Sbjct: 479 LALLDEQ 485


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 29.0 bits (64), Expect = 0.14
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 78  VKLYLTNPAQTTLLCQYLLS 97
           VKL+L  P++T  L Q +LS
Sbjct: 486 VKLFLKKPSETQELVQQVLS 505


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.9 bits (54), Expect = 3.3
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 6   INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 44
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase,
           AknH {Streptomyces galilaeus [TaxId: 33899]}
          Length = 140

 Score = 24.0 bits (51), Expect = 5.3
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 103 QNYDIRDRARLLRQLLFPAPGAEN 126
            + D  D     RQL  P P  E+
Sbjct: 117 HHRDWPDYQGTYRQLGEPWPETEH 140


>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1,  GlcAT-P
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 23.6 bits (51), Expect = 9.4
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 75  YTRV--KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQ 116
           Y+R   K  LT  A T L    L  L   D        ARLLR 
Sbjct: 11  YSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRD 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,121
Number of extensions: 19047
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 13
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)