BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15261
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 339 bits (870), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/289 (57%), Positives = 215/289 (74%), Gaps = 14/289 (4%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIG- 56
+L+YL+ +CNHP LVL P H +++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1571 ALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGN 1630
Query: 57 ASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116
S SG+ S++ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS
Sbjct: 1631 GSTSESGT----------ESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS 1680
Query: 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRA 176
+ RH+IV++FN+DP+IDVLLLTT VGGLGLNLTGADTV+FV+HDW+PM+DLQAMDRA
Sbjct: 1681 IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1740
Query: 177 HRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCL 236
HRIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF L
Sbjct: 1741 HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1800
Query: 237 DGQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLN 285
D ++A +S + +K +L+ L +LWD+ +Y+ EY L NF+ SL
Sbjct: 1801 DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK 1849
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/303 (53%), Positives = 206/303 (67%), Gaps = 21/303 (6%)
Query: 1 SLRYLQSVCNHPKLVLGPSH---AQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+Y++ +CNHP LVL P+H AQ + + + GL+L DI +A KL AL+ LL +CGIG
Sbjct: 1566 ALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECGIGE 1625
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
D P ++++QHRALIFCQL+ MLD+VENDLFK MP VTY+RLDGS+
Sbjct: 1626 ED--IDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSI 1683
Query: 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAH 177
R +V KFN DP+ID LLLTT+VGGLGLNLTGADTVIFV+HDW+PM DLQAMDRAH
Sbjct: 1684 DPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAH 1743
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQKKVVNVYR+ITK TLEEKIM LQKFK+ A+TV+N +N L +M T ++LDLF D
Sbjct: 1744 RIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLDLFDPD 1803
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDT----------------LPELWDEREYEEEYDLSNFV 281
S+ + + KG+ D L ELWD +YEEEY+L F+
Sbjct: 1804 NVTSQDNEEKNNGDSQAAKGMEDIANETGLTGKAKEALGELKELWDPSQYEEEYNLDTFI 1863
Query: 282 QSL 284
++L
Sbjct: 1864 KTL 1866
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 304 bits (779), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 160/300 (53%), Positives = 206/300 (68%), Gaps = 26/300 (8%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALV---SRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+Y++ +CNHP L+L H + A+V ++ L D++HA KL AL QLL DCG+G
Sbjct: 1659 ALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGN 1718
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
S S A +++HR LIFCQL+ MLD+VE DL + MP VTY+RLDGSV
Sbjct: 1719 SSVNSNGIDSALTNA-----VSEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSV 1773
Query: 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAH 177
T R VTKFN+DP+IDVLLLTT VGGLGLNLTGADTVIFV+HDW+PM+DLQAMDRAH
Sbjct: 1774 EPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAH 1833
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLF--- 234
RIGQKKVVNVYRLIT+ LEEKIM LQ+FK+ A+TV+N +N L ++ T +ILDLF
Sbjct: 1834 RIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTT 1893
Query: 235 --------CLDGQDSRQEAGS--SGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSL 284
+D ++S AG SGT+ L+G LPE+WDE +Y +E++L F+ +L
Sbjct: 1894 ADEQQTVQNIDKEESEDAAGRGLSGTSKKALEG----LPEMWDESQY-DEFNLDGFISTL 1948
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp26 PE=4 SV=1
Length = 973
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 127/247 (51%), Gaps = 36/247 (14%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGS 64
L+ +CNHP LV E L+ + N D + KL ++ LL + G
Sbjct: 595 LRKICNHPDLVT------REYLLHKEDYNYGDPEKSGKLKVIRALLT---LWKKQG---- 641
Query: 65 GPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHA 124
HR L+F Q R MLDI+E L ++P V Y R+DGS R
Sbjct: 642 ----------------HRTLLFSQTRQMLDILEIGL--KDLPDVHYCRMDGSTSIALRQD 683
Query: 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184
+V FN + DV LLTT+VGGLG+NLTGAD VI D DW+P D QA +RA R+GQKK
Sbjct: 684 LVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKD 743
Query: 185 VNVYRLITKNTLEEKIMNLQKFKLLTANTVINS-ENRNLDTMATGKILDLFCLDGQDSRQ 243
V VYRL+T T+EEKI + Q FK N ++ + R M + DLF L D++
Sbjct: 744 VVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTD--LHDLFTLG--DNKT 799
Query: 244 EAGSSGT 250
E +G+
Sbjct: 800 EGTETGS 806
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1
SV=2
Length = 1638
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 6/175 (3%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LI+ Q+ M+D++E ++ + Y+RLDGS +AR +V F + I V LL
Sbjct: 1173 HRVLIYSQMTKMIDLLEEYMWHRKH---RYMRLDGSSKISARRDMVADFQTRADIFVFLL 1229
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1230 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1289
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ---DSRQEAGSSGTNP 252
+ + K VI+ N DT+ +++ L D + RQEA ++P
Sbjct: 1290 LQRAREKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEEIEMKYRQEAKLQSSSP 1344
>sp|P0CO16|INO80_CRYNJ Putative DNA helicase INO80 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=INO80 PE=3 SV=1
Length = 1765
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L++ Q+ M+D++E L + YLRLDGS R +VT + ++P I V L
Sbjct: 1470 HRVLLYFQMTKMMDLIEEYLIFRQY---KYLRLDGSSPIAERRDMVTSWQTNPDIFVFCL 1526
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF DHDW+P D QAMDRAHR+GQ K V VYRL+ + T+EE+I
Sbjct: 1527 STRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERI 1586
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
+ + + K + V+ +++ + D +I+ LF D
Sbjct: 1587 LQMARGKKDIQDVVVGTKSVS-DVAKPSEIVSLFMDD 1622
>sp|P0CO17|INO80_CRYNB Putative DNA helicase INO80 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=INO80 PE=3 SV=1
Length = 1765
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L++ Q+ M+D++E L + YLRLDGS R +VT + ++P I V L
Sbjct: 1470 HRVLLYFQMTKMMDLIEEYLIFRQY---KYLRLDGSSPIAERRDMVTSWQTNPDIFVFCL 1526
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF DHDW+P D QAMDRAHR+GQ K V VYRL+ + T+EE+I
Sbjct: 1527 STRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERI 1586
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
+ + + K + V+ +++ + D +I+ LF D
Sbjct: 1587 LQMARGKKDIQDVVVGTKSVS-DVAKPSEIVSLFMDD 1622
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1
Length = 1493
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
R L+F Q R MLDI+E L TYL++DG+ +R ++T++N D +I V LL
Sbjct: 856 QRVLLFSQSRQMLDILEVFL---RAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLL 912
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
TT+VGGLG+NLTGA+ V+ D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 913 TTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + + +LF L D+ Q +S G
Sbjct: 973 YHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAG 1024
>sp|Q4PGL2|INO80_USTMA Putative DNA helicase INO80 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=INO80 PE=3 SV=1
Length = 1910
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LI+ Q+ M+D++E L + YLRLDG+ + R +VT + + P + + LL
Sbjct: 1596 HRVLIYFQMTRMIDLMEEYLIYRQY---KYLRLDGASKISDRRDMVTDWQTKPELFIFLL 1652
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF DHDW+P D QAMDRAHR+GQ K V VYRLITK T++E+I
Sbjct: 1653 STRAGGLGINLTAADTVIFYDHDWNPSNDSQAMDRAHRLGQTKQVTVYRLITKGTIDERI 1712
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
+ L + K + V+ ++ + MA + + LD
Sbjct: 1713 VRLARNKKEVQDIVVGTKAYSETGMAKPQEIVSLLLD 1749
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V LL
Sbjct: 1121 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQTRNDIFVFLL 1177
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1178 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1237
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
+ K K VI+ N DT+ +++ L D
Sbjct: 1238 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDD 1274
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V LL
Sbjct: 1118 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQNRNDIFVFLL 1174
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1175 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1234
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
+ K K VI+ N DT+ +++ L D
Sbjct: 1235 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDD 1271
>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SWR1 PE=3 SV=1
Length = 1772
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 3/160 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LD++E L + G+ Y+RLDG+ R + +FN+DP I V +L
Sbjct: 1486 HRALIFTQMTKVLDVLEQFL---NIHGLRYMRLDGATKIEQRQLLTERFNTDPKIPVFIL 1542
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR ++++T+E I
Sbjct: 1543 STRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1602
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K + N VI D + D+ L+ D
Sbjct: 1603 LKKANQKQILDNVVIQDGEFTTDYFNKMSVHDMLGLEPDD 1642
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
SV=1
Length = 1085
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 132/239 (55%), Gaps = 37/239 (15%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGS 64
L+ +CNHP L+ + R + D + + K+ +KQLL+ + G
Sbjct: 623 LRKICNHPDLL--------DRDTKRHNPDYGDPKRSGKMQVVKQLLL---LWHKQG---- 667
Query: 65 GPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVT---YLRLDGSVVSTA 121
++AL+F Q R MLDI+E + + P ++ YLR+DG+
Sbjct: 668 ----------------YKALLFTQSRQMLDILE-EFISTKDPDLSHLNYLRMDGTTNIKG 710
Query: 122 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQ 181
R ++V +FN++ + DV LLTT+VGGLG+NLTGA+ +I D DW+P D+QA +RA RIGQ
Sbjct: 711 RQSLVDRFNNE-SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 769
Query: 182 KKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
K+ V++YRL+ ++EEKI + Q FK N ++ ++ + ++ DLF L G++
Sbjct: 770 KREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRIL-TDPKQKRFFKIHELHDLFSLGGEN 827
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LIF Q+ MLD++E L G YLRLDGS R A++ +FN+D I +L
Sbjct: 2060 HRVLIFTQMTRMLDVLEQFLTYH---GHLYLRLDGSTRVEQRQALMERFNADKRIFCFIL 2116
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GG+G+NLTGADTV+F D DW+P D QA DR HRIGQ + V++YRLI++ T+EE I
Sbjct: 2117 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2176
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + I N I +LF
Sbjct: 2177 LKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 2210
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 100/169 (59%), Gaps = 10/169 (5%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LIF Q+ +LDI+E+ L G YLRLDG+ +R A+ +FN D I +L
Sbjct: 1550 HRILIFTQMTRVLDILESFL---NYHGYRYLRLDGATKVESRQALTEQFNRDARISAFIL 1606
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTV+F D DW+ + Q MDRAHRIGQ + V++YR +T++T+EE +
Sbjct: 1607 STRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTIEENM 1666
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSG 249
+ K L N VI N +T+A LD D E+G G
Sbjct: 1667 LRKANQKRLLDNVVIQQGEFNTETLAKR-------LDWTDMLDESGKIG 1708
>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2
Length = 3198
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LIF Q+ MLD++E L G YLRLDGS R ++ +FN D I +L
Sbjct: 1675 HRVLIFTQMTKMLDVLEAFL---NYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFIL 1731
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GG+G+NLTGADTVIF D DW+P D QA DR HRIGQ + V++YRL+++ T+E I
Sbjct: 1732 STRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNI 1791
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTN 251
+ K + ++ I N + I DLF ++ + + + N
Sbjct: 1792 LKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSEQDESSQEKSEN 1842
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 32/216 (14%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLLMDCGIGASPGMS 62
L+ CNHP L + A+ EA + G+ + I+++ K L+++L G
Sbjct: 891 LKKCCNHPYLFV---KAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGG----- 942
Query: 63 GSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTAR 122
HR LIF Q+ MLDI+E DL CE G Y R+DGS++ R
Sbjct: 943 ------------------HRVLIFSQMTRMLDIME-DL--CEYEGYRYERIDGSIMGQMR 981
Query: 123 HAIVTKFNSDPTID-VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQ 181
+ ++N+ + LL+T+ GGLG+NL ADTVI D DW+P D+QA RAHR+GQ
Sbjct: 982 QDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQ 1041
Query: 182 KKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINS 217
K V +YR +TK ++EEKI ++ K K+L + V+ +
Sbjct: 1042 KHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRA 1077
>sp|O14148|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ino80 PE=1 SV=4
Length = 1604
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LI+ Q+ M+D++E L YLRLDGS + R +VT++ + P + V LL
Sbjct: 1446 HRVLIYFQMTRMIDLMEEYL---TFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLL 1502
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHRIGQ+K V VYR IT+ T+EE+I
Sbjct: 1503 STRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERI 1562
Query: 201 MNLQKFKLLTANTVIN 216
+ K K VI+
Sbjct: 1563 VIRAKEKEEVQKVVIS 1578
>sp|Q59KI4|INO80_CANAL Putative DNA helicase INO80 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=INO80 PE=3 SV=1
Length = 1387
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 26/171 (15%)
Query: 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIV 96
I + KL L +LL+D G HR LI+ Q+ M+ I
Sbjct: 1232 IAESGKLAKLDELLIDLKRGG-----------------------HRILIYFQMTRMMQIF 1268
Query: 97 ENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156
E L Y+RLDGS +R +V + ++P I + +L+T+ GGLGLNLT ADT
Sbjct: 1269 EEYL---AYKSYKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADT 1325
Query: 157 VIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFK 207
VIF D DW+P D QAMDRAHRIGQ K V V+RL+T+NT+E+KI+ K K
Sbjct: 1326 VIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKEK 1376
>sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1
Length = 1450
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L G Y+RLDG+ R + +FNSDP I V +L
Sbjct: 1195 HRALIFTQMTKVLDILEQFL---NYHGYLYMRLDGATKIEDRQILTERFNSDPKITVFIL 1251
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR ++++T+E I
Sbjct: 1252 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1311
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
+ K + +I D + + DLF D
Sbjct: 1312 LKKANQKRQLDDVIIQKGEFTTDYFSKLSVKDLFGSD 1348
>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4
Length = 2395
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 89/133 (66%), Gaps = 5/133 (3%)
Query: 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV 137
L +HR LIF Q+ MLD+++ L G Y RLDG+ R A++ +FN+DP +
Sbjct: 1202 LYKHRCLIFTQMSKMLDVLQTFLSHH---GYQYFRLDGTTGVEQRQAMMERFNADPKVFC 1258
Query: 138 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
+L+T+ GG+G+NLTGADTVIF D DW+P D QA DR HRIGQ + V++YRLI++ T+E
Sbjct: 1259 FILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIE 1318
Query: 198 EKIMN--LQKFKL 208
E I+ QK +L
Sbjct: 1319 ENILRKATQKRRL 1331
>sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3
SV=1
Length = 1572
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L G Y+RLDG+ R + +FNSDP I V +L
Sbjct: 1327 HRALIFTQMTKVLDILEQFL---NFHGYLYMRLDGATKIEDRQILTERFNSDPRITVFIL 1383
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR ++ +T+E I
Sbjct: 1384 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNI 1443
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K N VI + + D + DL
Sbjct: 1444 LKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDLL 1477
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 34/215 (15%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL-NLSDIRHAA-KLPALKQLLMDCGIGASPGMS 62
L+ CNHP L PS A+ EA +S GL +S + A+ KL L ++L
Sbjct: 551 LRKCCNHPYLF--PSAAE-EATISPSGLYEMSSLTKASGKLDLLSKMLKQLKAD------ 601
Query: 63 GSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTAR 122
HR L+F Q+ ML+++E+ L E G Y R+DGS+ R
Sbjct: 602 -----------------NHRVLLFSQMTKMLNVLEHFL---EGEGYQYDRIDGSIKGDLR 641
Query: 123 HAIVTKFNSDPTID--VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIG 180
+ +FN DP + V LL+T+ GGLG+NL ADTVI D DW+P D+QA RAHR+G
Sbjct: 642 QKAIDRFN-DPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMG 700
Query: 181 QKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVI 215
QKK V +YR +T N++EE+IM + K K++ + V+
Sbjct: 701 QKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVV 735
>sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2
Length = 1486
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 6/164 (3%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L G Y+RLDG+ R + +FN+DP I V +L
Sbjct: 1234 HRALIFTQMTKVLDILEQFL---NYHGYLYMRLDGATKIEDRQILTERFNTDPRITVFIL 1290
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR ++++T+E I
Sbjct: 1291 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1350
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQE 244
+ K N VI D + + DL G D +E
Sbjct: 1351 LKKANQKRQLDNIVIQKGEFTTDYFSRLSVKDLL---GSDETEE 1391
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L + G YLRLDG+ R + +FN DP I +L
Sbjct: 1523 HRALIFTQMTKVLDILEQFL---NIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFIL 1579
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YRL++++T+E I
Sbjct: 1580 STRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANI 1639
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ 239
+ K + + VI D + D+ +G+
Sbjct: 1640 LRKASQKQMLDDVVIQEGEFTTDYFNRLSVRDVLGSNGE 1678
>sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=SWR1 PE=3 SV=1
Length = 1641
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 89/153 (58%), Gaps = 3/153 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L + G Y+RLDG+ R + KFN DP I V +L
Sbjct: 1383 HRALIFTQMTKVLDILEQFL---NIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFIL 1439
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR +++ T+E I
Sbjct: 1440 STRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNI 1499
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
+ K N VI D + DL
Sbjct: 1500 IKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDL 1532
>sp|Q4IAK7|SWR1_GIBZE Helicase SWR1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SWR1 PE=3 SV=1
Length = 1691
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L + G YLRLDG+ R + +FN+DP I +L
Sbjct: 1388 HRALIFTQMTKVLDILEQFL---NIHGHKYLRLDGATKVEQRQILTDRFNNDPRILCFIL 1444
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YRL++++T+E I
Sbjct: 1445 STRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANI 1504
Query: 201 MNLQKFKLLTANTVI 215
+ K + + VI
Sbjct: 1505 LRKASQKQMLDDVVI 1519
>sp|Q0UG82|INO80_PHANO Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 /
ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2
Length = 1673
Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 82/127 (64%), Gaps = 5/127 (3%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L++ Q+ M+D++E L Y RLDGS R V F SDPTI V LL
Sbjct: 1416 HRVLLYFQMTRMIDLMEEYL---TYRNYKYCRLDGSTKLEDRRDTVADFQSDPTIFVFLL 1472
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ + V VYRLIT T+EE+I
Sbjct: 1473 STRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGTIEERI 1532
Query: 201 MN--LQK 205
LQK
Sbjct: 1533 RKRALQK 1539
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 114/216 (52%), Gaps = 32/216 (14%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD--IRHAAKLPALKQLLMDCGIGASPGMS 62
L+ CNHP L + A EA + G+ I++A K L+++L G
Sbjct: 905 LKKCCNHPYLFM---KACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGG----- 956
Query: 63 GSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTAR 122
HR LIF Q+ MLDI+E+ C++ G Y R+DGS+ R
Sbjct: 957 ------------------HRVLIFSQMTMMLDILED---FCDVEGYKYERIDGSITGQQR 995
Query: 123 HAIVTKFNSDPTID-VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQ 181
+ ++N+ V LL+T+ GGLG+NL ADTVI D DW+P D+QA RAHR+GQ
Sbjct: 996 QDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQ 1055
Query: 182 KKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINS 217
K V +YR +TK ++EE+I ++ K K+L + V+ +
Sbjct: 1056 KHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRA 1091
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1070 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1126
Query: 138 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
LL+T+ GGLGLNL ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1127 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1186
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1187 EKILAAAKYKLNVDQKVIQA 1206
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1065 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
Query: 138 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
LL+T+ GGLGLNL ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1182 EKILAAAKYKLNVDQKVIQA 1201
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LDI+E L + G Y+RLDG+ R + KFN D I V +L
Sbjct: 1349 HRALIFTQMTKVLDILEQFL---NIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIPVFIL 1405
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR +++ T+E I
Sbjct: 1406 STRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNI 1465
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
+ K N VI D + DL
Sbjct: 1466 LRKANQKRQLDNVVIQEGEFTTDYFGKFSVKDL 1498
>sp|Q8RXS6|INO80_ARATH DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2
Length = 1507
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L+F Q+ ML+I+E+ + YLRLDGS R +V F I V LL
Sbjct: 1223 HRVLLFAQMTKMLNILEDYM---NYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLL 1279
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF + DW+P DLQAMDRAHR+GQ K V VYRLI K T+EEKI
Sbjct: 1280 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKI 1339
Query: 201 MN 202
++
Sbjct: 1340 LH 1341
>sp|Q05471|SWR1_YEAST Helicase SWR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SWR1 PE=1 SV=1
Length = 1514
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ +LD++E L G Y+RLDG+ R + +FN+D I V +L
Sbjct: 1263 HRALIFTQMTKVLDVLEQFL---NYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFIL 1319
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR ++++T+E I
Sbjct: 1320 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1379
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
+ K N VI + D + + DL
Sbjct: 1380 LKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDL 1412
>sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1
Length = 1695
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HRALIF Q+ MLDI+E L + G YLRLDG+ R + +FN+D I V +L
Sbjct: 1395 HRALIFTQMTKMLDILEQFL---NIHGHRYLRLDGTTKVEQRQILTDRFNNDDRILVFIL 1451
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GGLG+NLTGADTVIF D DW+P D Q DR HRIGQ + V++YR ++++T+E I
Sbjct: 1452 SSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1511
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + VI D + D+
Sbjct: 1512 LRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI 1545
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LIF Q+ +LDI+E +F G YLRLDGS R + +FNSD I V +
Sbjct: 955 HRVLIFTQMTRVLDILE--MF-LSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIA 1011
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GG+G+NLTGADTV F D DW+P D Q MDRAHRIGQ + V++YR ++ +T+EE +
Sbjct: 1012 SSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENM 1071
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ + K L VI N D D+F
Sbjct: 1072 LRKAEQKRLLDKMVIQEGGFNNDWWGRVGWKDMF 1105
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LIF Q+ +LDI+E +F G YLRLDGS R + +FNSD I V +
Sbjct: 955 HRVLIFTQMTRVLDILE--MF-LSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIA 1011
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+++ GG+G+NLTGADTV F D DW+P D Q MDRAHRIGQ + V++YR ++ +T+EE +
Sbjct: 1012 SSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENM 1071
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ + K L VI N D D+F
Sbjct: 1072 LRKAEQKRLLDKMVIQEGGFNNDWWGRVGWKDMF 1105
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 130/272 (47%), Gaps = 57/272 (20%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGS 64
L+ CNHP L+ P + + ++ + ++ K L ++L P +
Sbjct: 567 LRKCCNHPYLIEYP----IDPVTQEFKIDEELVTNSGKFLILDRML--------PELKKR 614
Query: 65 GPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHA 124
G H+ L+F Q+ +MLDI+ + C + + RLDGS+ + R
Sbjct: 615 G---------------HKVLLFSQMTSMLDIL---MDYCHLRDFNFSRLDGSMSYSEREK 656
Query: 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184
+ FN+DP + + L++T+ GGLG+NLT ADTVI D DW+P DLQA DR HRIGQ K
Sbjct: 657 NMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKP 716
Query: 185 VNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQE 244
V VYRL+T NT+++KI+ K R L+ + K + +
Sbjct: 717 VVVYRLVTANTIDQKIVERAAAK------------RKLEKLIIHK-----------NHFK 753
Query: 245 AGSSGTNPGGLKGLLD--TLPELWDEREYEEE 274
G SG N K LD L EL R+YE E
Sbjct: 754 GGQSGLNLS--KNFLDPKELMELLKSRDYERE 783
>sp|A5E0W5|INO80_LODEL Putative DNA helicase ino80 OS=Lodderomyces elongisporus (strain ATCC
11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=INO80 PE=3 SV=1
Length = 1575
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 81 HRALIFCQLRAMLDIVENDL-FKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139
HR LI+ Q+ M+D++E L FK Y+RLDGS R +V + + P I V L
Sbjct: 1328 HRVLIYFQMTKMMDLMEEYLTFKQH----KYIRLDGSSKLDDRRDLVHDWQTKPEIFVFL 1383
Query: 140 LTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
L+T+ GGLG+NLT ADTV+F D DW+P D QAMDRAHR+GQ + V VYRL+T+NT+EE+
Sbjct: 1384 LSTRAGGLGINLTAADTVVFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRNTIEER 1443
Query: 200 IMNLQKFK 207
+ + K K
Sbjct: 1444 MRDRAKQK 1451
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS)
GN=INO80 PE=3 SV=1
Length = 1662
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 81/127 (63%), Gaps = 5/127 (3%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L++ Q+ M+D++E L Y RLDGS R V+ F P I V LL
Sbjct: 1397 HRVLLYFQMTRMIDLMEEYL---TYRNYKYCRLDGSTKLEDRRDTVSDFQQRPEIFVFLL 1453
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLIT+ T+EE+I
Sbjct: 1454 STRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERI 1513
Query: 201 MN--LQK 205
LQK
Sbjct: 1514 RKRALQK 1520
>sp|O13682|SWR1_SCHPO Helicase swr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=swr1 PE=3 SV=1
Length = 1288
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR LIF Q+ +LDI+E L + G YLRLDG+ R + +FN+D I V +L
Sbjct: 1008 HRVLIFTQMTKVLDILEQFL---NIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFIL 1064
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLTGADTVIF D DW+P D QA DR+HRIGQ + V++YRLI++ T+E +
Sbjct: 1065 STRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNM 1124
Query: 201 MNLQKFKLLTANTVI 215
+ K + VI
Sbjct: 1125 LRRANQKRMLDKIVI 1139
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
H+ L+F Q+ +MLDI+ + C + + RLDGS+ + R + FN+DP + + L+
Sbjct: 599 HKVLVFSQMTSMLDILMD---YCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLV 655
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 656 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 715
Query: 201 M 201
+
Sbjct: 716 V 716
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 91/137 (66%), Gaps = 4/137 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VLL 139
HR LIF Q+ MLDI+ + L + G+ + RLDG+V S R + FNS + D V L
Sbjct: 712 HRVLIFSQMVRMLDILGDYL---SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 768
Query: 140 LTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
L+T+ GGLG+NL ADTV+ D DW+P DLQAM RAHRIGQK V VYRL++K+T+EE+
Sbjct: 769 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 828
Query: 200 IMNLQKFKLLTANTVIN 216
++ + K++ +I+
Sbjct: 829 VLERARKKMILEYAIIS 845
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 109/218 (50%), Gaps = 41/218 (18%)
Query: 5 LQSVCNHPKLV----LGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG 60
L+ CNHP L GP + E +V G K+ AL +LL A
Sbjct: 460 LRKCCNHPYLFDGAEPGPPYTTDEHIVGNSG----------KMVALDKLL------ARIK 503
Query: 61 MSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120
GS R LIF Q+ +LDI+E+ C G Y RLDG
Sbjct: 504 EQGS-----------------RVLIFSQMTRLLDILED---YCMWRGYEYSRLDGQTPHE 543
Query: 121 ARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRI 179
R + FN+ + + + +L+T+ GGLG+NL AD VI D DW+P DLQAMDRAHRI
Sbjct: 544 EREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 603
Query: 180 GQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINS 217
GQKK V V+RLIT NT+EE+I+ + KL + VI
Sbjct: 604 GQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 641
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 80/120 (66%), Gaps = 3/120 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L++ Q+ M+D++E L Y RLDGS R V F ++P+I V LL
Sbjct: 1676 HRVLLYFQMTRMIDLMEEYLT---YRNWKYCRLDGSTKFEDRRDTVHDFQTNPSIFVFLL 1732
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ + V VYRLIT+ T+EE+I
Sbjct: 1733 STRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERI 1792
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ LL+T+ GGLGLNL ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
SV=2
Length = 1129
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 86/140 (61%), Gaps = 5/140 (3%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLL 140
R LIF Q+ +LDI+E+ C Y R+DGS R + +N+ D V LL
Sbjct: 520 RVLIFSQMSRLLDILED---YCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLL 576
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
TT+ GGLG+NLT AD V+ D DW+P DLQAMDRAHRIGQKK V V+RL+T N++EEKI
Sbjct: 577 TTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKI 636
Query: 201 MNLQKFKLLTANTVINSENR 220
+ KL VI +NR
Sbjct: 637 LERATQKLRLDQLVI-QQNR 655
>sp|Q872I5|INO80_NEUCR Putative DNA helicase ino-80 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ino-80 PE=3 SV=3
Length = 1997
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
HR L++ Q+ M+D++E L Y RLDGS R V F + P I + LL
Sbjct: 1715 HRVLLYFQMTRMIDLMEEYL---TYRNYKYCRLDGSTKLEDRRDTVADFQTRPEIFIFLL 1771
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
+T+ GGLG+NLT ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLIT+ T+EE+I
Sbjct: 1772 STRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERI 1831
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ LL+T+ GGLGLNL ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ LL+T+ GGLGLNL ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,627,982
Number of Sequences: 539616
Number of extensions: 4736488
Number of successful extensions: 13318
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 12729
Number of HSP's gapped (non-prelim): 430
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)