Query psy15261
Match_columns 292
No_of_seqs 281 out of 2379
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:28:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0392|consensus 100.0 3.7E-68 8.1E-73 532.2 22.0 275 1-285 1267-1549(1549)
2 KOG0385|consensus 100.0 1.3E-46 2.9E-51 364.9 17.2 206 2-240 438-648 (971)
3 KOG0384|consensus 100.0 1.9E-45 4.1E-50 370.4 15.1 213 2-240 642-862 (1373)
4 KOG0387|consensus 100.0 1.3E-43 2.7E-48 345.5 18.6 207 1-239 495-702 (923)
5 PLN03142 Probable chromatin-re 100.0 2.4E-40 5.3E-45 340.6 18.8 206 2-239 438-645 (1033)
6 KOG0389|consensus 100.0 1.3E-37 2.8E-42 303.3 18.2 173 36-235 756-928 (941)
7 KOG0390|consensus 100.0 5.2E-37 1.1E-41 304.7 17.7 214 2-240 530-753 (776)
8 KOG0391|consensus 100.0 2.3E-36 4.9E-41 301.9 16.8 182 31-238 1249-1431(1958)
9 KOG1002|consensus 100.0 1.6E-34 3.5E-39 270.1 14.8 179 33-235 612-790 (791)
10 KOG0386|consensus 100.0 3.8E-33 8.1E-38 277.5 13.0 189 2-221 676-865 (1157)
11 KOG0388|consensus 100.0 2.7E-32 5.8E-37 263.3 14.5 156 36-218 1023-1178(1185)
12 COG0553 HepA Superfamily II DN 100.0 1.5E-31 3.3E-36 275.7 19.9 209 2-236 645-865 (866)
13 KOG1015|consensus 100.0 3.4E-32 7.4E-37 268.4 12.5 183 33-239 1118-1321(1567)
14 KOG4439|consensus 100.0 4.2E-31 9.1E-36 255.2 18.6 175 37-236 725-901 (901)
15 PRK04914 ATP-dependent helicas 99.9 1.6E-26 3.4E-31 237.8 13.4 162 36-225 474-636 (956)
16 KOG1000|consensus 99.9 2.2E-25 4.8E-30 209.0 14.1 158 40-219 471-628 (689)
17 KOG1016|consensus 99.9 3.1E-25 6.7E-30 216.1 8.7 164 75-239 714-893 (1387)
18 KOG1001|consensus 99.9 2.8E-23 6.1E-28 207.1 3.8 134 81-217 540-673 (674)
19 PRK13766 Hef nuclease; Provisi 99.8 2.8E-18 6.1E-23 176.3 16.8 149 38-215 344-500 (773)
20 cd00079 HELICc Helicase superf 99.8 3.3E-18 7.1E-23 136.5 11.3 120 41-188 12-131 (131)
21 TIGR00603 rad25 DNA repair hel 99.7 2.5E-16 5.3E-21 158.3 15.8 133 39-203 478-616 (732)
22 COG1111 MPH1 ERCC4-like helica 99.7 6.3E-16 1.4E-20 146.6 16.1 149 39-216 346-503 (542)
23 KOG0331|consensus 99.7 2.4E-16 5.3E-21 151.9 13.0 126 37-189 320-445 (519)
24 PTZ00110 helicase; Provisional 99.7 1.5E-15 3.3E-20 150.3 14.4 128 37-194 357-484 (545)
25 PF00271 Helicase_C: Helicase 99.6 2.8E-16 6.1E-21 115.5 5.3 75 104-180 4-78 (78)
26 KOG0298|consensus 99.6 5.8E-16 1.2E-20 158.7 7.7 141 40-210 1202-1342(1394)
27 PRK04837 ATP-dependent RNA hel 99.6 2.3E-15 5E-20 144.7 11.2 108 79-193 254-361 (423)
28 KOG0328|consensus 99.6 2.4E-15 5.3E-20 133.5 10.3 123 42-196 253-375 (400)
29 COG0513 SrmB Superfamily II DN 99.6 1E-14 2.2E-19 143.4 13.1 132 41-205 259-390 (513)
30 PRK11192 ATP-dependent RNA hel 99.6 1.3E-14 2.7E-19 139.9 12.8 105 79-188 244-348 (434)
31 PRK01297 ATP-dependent RNA hel 99.6 2.1E-14 4.6E-19 140.0 13.7 120 38-187 318-437 (475)
32 PRK11776 ATP-dependent RNA hel 99.6 1.8E-14 4E-19 139.9 12.9 124 39-194 226-349 (460)
33 PRK04537 ATP-dependent RNA hel 99.6 1.8E-14 3.9E-19 143.4 12.6 104 79-187 256-359 (572)
34 KOG0330|consensus 99.6 2E-14 4.3E-19 132.4 11.6 112 79-197 299-410 (476)
35 KOG0333|consensus 99.6 3.6E-14 7.9E-19 134.8 13.1 128 35-194 497-624 (673)
36 PRK10590 ATP-dependent RNA hel 99.6 2.2E-14 4.9E-19 139.2 11.8 105 79-188 244-348 (456)
37 PLN00206 DEAD-box ATP-dependen 99.5 4.6E-14 1E-18 139.1 13.1 127 39-194 349-475 (518)
38 smart00490 HELICc helicase sup 99.5 2.3E-14 5E-19 104.8 7.9 81 95-180 2-82 (82)
39 TIGR00614 recQ_fam ATP-depende 99.5 8.5E-14 1.8E-18 135.7 13.1 105 79-188 225-329 (470)
40 PRK11634 ATP-dependent RNA hel 99.5 3.2E-13 6.9E-18 135.7 13.2 119 40-188 230-348 (629)
41 PRK11057 ATP-dependent DNA hel 99.5 4.3E-13 9.4E-18 134.5 14.0 104 79-187 235-338 (607)
42 PTZ00424 helicase 45; Provisio 99.5 3.3E-13 7.2E-18 128.4 11.6 110 79-195 266-375 (401)
43 TIGR01389 recQ ATP-dependent D 99.5 7.5E-13 1.6E-17 132.5 13.7 104 79-187 223-326 (591)
44 PHA02558 uvsW UvsW helicase; P 99.4 7.8E-13 1.7E-17 129.9 13.0 114 78-195 342-456 (501)
45 KOG0332|consensus 99.4 9.4E-13 2E-17 120.9 12.5 116 39-184 314-435 (477)
46 KOG0383|consensus 99.4 2.1E-14 4.6E-19 142.7 1.8 117 1-148 579-696 (696)
47 PLN03137 ATP-dependent DNA hel 99.4 1.5E-12 3.3E-17 135.0 12.7 105 80-189 680-784 (1195)
48 KOG0341|consensus 99.4 9.9E-13 2.1E-17 121.4 9.5 134 37-203 404-537 (610)
49 KOG0336|consensus 99.4 1.2E-12 2.6E-17 121.5 10.0 118 38-184 447-564 (629)
50 KOG0335|consensus 99.4 2.2E-12 4.7E-17 123.0 11.3 131 37-188 310-440 (482)
51 TIGR01587 cas3_core CRISPR-ass 99.3 2.6E-11 5.7E-16 113.8 15.8 124 41-194 207-338 (358)
52 KOG0345|consensus 99.3 6.4E-12 1.4E-16 118.4 10.1 124 37-188 237-360 (567)
53 KOG0326|consensus 99.3 1.3E-12 2.8E-17 118.0 5.2 119 35-183 302-420 (459)
54 KOG0342|consensus 99.3 7.4E-12 1.6E-16 118.5 10.0 114 41-183 315-428 (543)
55 KOG0344|consensus 99.3 1.7E-11 3.6E-16 118.2 12.4 122 38-188 370-492 (593)
56 TIGR03817 DECH_helic helicase/ 99.3 1.1E-11 2.5E-16 126.7 11.6 120 79-202 270-394 (742)
57 KOG0354|consensus 99.3 6.1E-11 1.3E-15 118.3 15.6 151 38-216 392-550 (746)
58 PRK09200 preprotein translocas 99.3 2.6E-11 5.7E-16 123.3 12.6 121 38-188 409-537 (790)
59 PRK12898 secA preprotein trans 99.3 3.5E-11 7.5E-16 120.2 12.3 130 39-203 455-592 (656)
60 KOG0343|consensus 99.3 6.2E-11 1.4E-15 113.7 13.2 140 37-207 295-434 (758)
61 KOG0348|consensus 99.3 1E-10 2.2E-15 111.9 13.8 115 79-197 424-557 (708)
62 PRK13767 ATP-dependent helicas 99.2 1.4E-10 3E-15 120.8 14.3 110 78-189 282-395 (876)
63 KOG0340|consensus 99.2 8.3E-11 1.8E-15 107.7 10.8 121 37-184 233-353 (442)
64 TIGR00963 secA preprotein tran 99.2 8.7E-11 1.9E-15 118.2 12.1 119 40-188 388-513 (745)
65 KOG0327|consensus 99.2 7E-11 1.5E-15 109.0 10.1 113 40-184 250-362 (397)
66 TIGR03714 secA2 accessory Sec 99.2 1.1E-10 2.4E-15 118.0 11.4 120 38-188 405-533 (762)
67 TIGR00631 uvrb excinuclease AB 99.2 3.5E-10 7.6E-15 114.1 14.5 118 78-203 440-564 (655)
68 KOG4284|consensus 99.2 6.1E-11 1.3E-15 115.5 8.5 113 42-184 259-371 (980)
69 PRK05298 excinuclease ABC subu 99.2 5.9E-10 1.3E-14 112.7 15.2 123 40-193 429-556 (652)
70 KOG0338|consensus 99.2 8.4E-11 1.8E-15 111.9 8.3 114 80-203 426-540 (691)
71 KOG0350|consensus 99.1 1.4E-10 3.1E-15 110.1 9.4 111 79-193 428-539 (620)
72 PRK12906 secA preprotein trans 99.1 2.1E-10 4.5E-15 116.4 11.3 119 40-188 423-549 (796)
73 COG1061 SSL2 DNA or RNA helica 99.1 5.7E-10 1.2E-14 108.1 13.8 138 39-206 266-406 (442)
74 PRK10689 transcription-repair 99.1 6.1E-10 1.3E-14 118.3 14.0 109 79-192 808-917 (1147)
75 TIGR00580 mfd transcription-re 99.1 3.2E-10 6.9E-15 118.0 11.6 111 78-193 658-769 (926)
76 TIGR02621 cas3_GSU0051 CRISPR- 99.1 5.6E-10 1.2E-14 114.1 11.7 101 79-187 271-385 (844)
77 PRK12900 secA preprotein trans 99.1 7.2E-10 1.6E-14 113.7 12.3 119 40-188 581-707 (1025)
78 PRK10917 ATP-dependent DNA hel 99.1 1.3E-09 2.8E-14 110.9 14.1 107 78-187 469-584 (681)
79 KOG0339|consensus 99.1 5E-10 1.1E-14 106.7 9.7 126 41-197 453-578 (731)
80 KOG0347|consensus 99.1 2E-10 4.3E-15 110.2 6.6 133 79-217 462-614 (731)
81 TIGR00643 recG ATP-dependent D 99.1 3.1E-09 6.7E-14 107.3 15.3 107 78-187 446-561 (630)
82 COG0514 RecQ Superfamily II DN 99.0 1.6E-09 3.4E-14 106.8 11.7 110 79-195 229-338 (590)
83 KOG0334|consensus 99.0 1.6E-09 3.5E-14 110.6 10.7 124 39-193 596-719 (997)
84 TIGR01970 DEAH_box_HrpB ATP-de 99.0 2.6E-09 5.6E-14 110.1 11.6 110 80-194 209-336 (819)
85 KOG0349|consensus 99.0 2.4E-09 5.3E-14 100.4 8.8 100 79-180 504-603 (725)
86 PHA02653 RNA helicase NPH-II; 98.9 4E-09 8.7E-14 106.5 10.9 112 79-197 394-517 (675)
87 PRK09751 putative ATP-dependen 98.9 4.1E-09 8.8E-14 113.5 11.1 99 79-179 243-371 (1490)
88 PRK02362 ski2-like helicase; P 98.9 9.3E-09 2E-13 105.6 13.3 113 78-192 241-395 (737)
89 KOG1123|consensus 98.9 1.7E-08 3.6E-13 96.4 13.0 130 39-200 525-659 (776)
90 PF11496 HDA2-3: Class II hist 98.9 4.1E-09 9E-14 96.7 8.6 178 2-205 60-256 (297)
91 KOG0346|consensus 98.9 5E-09 1.1E-13 98.4 7.9 123 39-190 251-408 (569)
92 PRK11664 ATP-dependent RNA hel 98.9 9.6E-09 2.1E-13 106.0 10.7 111 80-195 212-340 (812)
93 PRK13104 secA preprotein trans 98.9 1.4E-08 3.1E-13 104.0 11.2 120 39-188 426-583 (896)
94 PRK01172 ski2-like helicase; P 98.8 5.5E-08 1.2E-12 99.0 13.7 104 78-184 234-368 (674)
95 PRK12904 preprotein translocas 98.8 2.9E-08 6.3E-13 101.4 11.5 120 39-188 412-569 (830)
96 TIGR01967 DEAH_box_HrpA ATP-de 98.8 2.7E-08 5.8E-13 105.9 10.9 111 79-196 278-406 (1283)
97 PRK13107 preprotein translocas 98.8 2.7E-08 5.8E-13 101.8 10.3 120 39-188 431-587 (908)
98 PRK00254 ski2-like helicase; P 98.7 8.6E-08 1.9E-12 98.3 11.0 115 78-194 236-388 (720)
99 KOG0953|consensus 98.7 1.5E-07 3.3E-12 90.9 10.4 152 7-190 309-473 (700)
100 PRK11448 hsdR type I restricti 98.6 2.4E-07 5.2E-12 98.5 11.7 109 80-191 698-815 (1123)
101 KOG0337|consensus 98.6 5.4E-08 1.2E-12 91.2 6.0 127 36-193 241-367 (529)
102 COG1202 Superfamily II helicas 98.6 8.5E-08 1.9E-12 93.0 7.3 132 39-193 416-552 (830)
103 PRK11131 ATP-dependent RNA hel 98.6 2.3E-07 5.1E-12 98.7 10.7 111 79-196 285-413 (1294)
104 PRK09694 helicase Cas3; Provis 98.6 4.7E-07 1E-11 93.9 12.7 102 78-182 558-665 (878)
105 KOG0351|consensus 98.5 1.6E-07 3.4E-12 97.6 7.6 109 78-191 483-591 (941)
106 PF13871 Helicase_C_4: Helicas 98.5 2.8E-07 6.2E-12 83.4 8.2 95 124-220 52-154 (278)
107 TIGR03158 cas3_cyano CRISPR-as 98.5 6.9E-07 1.5E-11 84.3 8.9 87 79-177 271-357 (357)
108 PRK09401 reverse gyrase; Revie 98.4 8.8E-07 1.9E-11 94.7 9.6 104 41-179 315-431 (1176)
109 COG1201 Lhr Lhr-like helicases 98.3 7.7E-06 1.7E-10 83.8 13.1 102 78-183 251-353 (814)
110 KOG0352|consensus 98.3 1.8E-06 3.9E-11 81.4 6.5 105 80-189 255-359 (641)
111 TIGR00595 priA primosomal prot 98.2 8.3E-06 1.8E-10 80.4 11.3 98 93-193 271-382 (505)
112 TIGR01054 rgy reverse gyrase. 98.2 6.2E-06 1.3E-10 88.4 10.7 76 81-164 327-409 (1171)
113 PRK14701 reverse gyrase; Provi 98.1 1.1E-05 2.4E-10 88.6 9.5 94 80-182 330-446 (1638)
114 PRK12903 secA preprotein trans 98.1 2E-05 4.4E-10 80.7 10.6 120 39-188 408-535 (925)
115 COG1200 RecG RecG-like helicas 98.0 5.6E-05 1.2E-09 75.4 11.9 105 78-185 471-584 (677)
116 COG1203 CRISPR-associated heli 98.0 3.8E-05 8.2E-10 79.1 11.1 128 76-209 436-567 (733)
117 COG4098 comFA Superfamily II D 98.0 0.0002 4.3E-09 66.2 13.8 113 78-195 303-417 (441)
118 COG0556 UvrB Helicase subunit 98.0 0.00018 3.9E-09 69.9 14.0 124 77-206 443-571 (663)
119 PRK12326 preprotein translocas 97.9 6.8E-05 1.5E-09 75.8 10.8 120 39-188 409-543 (764)
120 TIGR00596 rad1 DNA repair prot 97.9 7.7E-05 1.7E-09 77.1 10.2 59 155-216 478-537 (814)
121 PRK05580 primosome assembly pr 97.8 0.00014 3.1E-09 74.3 10.7 99 91-192 437-549 (679)
122 COG1197 Mfd Transcription-repa 97.8 0.00033 7.2E-09 73.6 12.9 111 78-193 801-912 (1139)
123 PRK12899 secA preprotein trans 97.7 0.00028 6E-09 73.2 10.6 119 40-188 551-677 (970)
124 PRK12901 secA preprotein trans 97.6 0.00022 4.7E-09 74.4 8.5 119 40-188 611-737 (1112)
125 PRK13103 secA preprotein trans 97.5 0.00043 9.4E-09 71.6 8.7 120 39-188 431-587 (913)
126 COG1205 Distinct helicase fami 97.3 0.00084 1.8E-08 70.1 9.0 135 41-202 290-430 (851)
127 TIGR00348 hsdR type I site-spe 97.3 0.0022 4.8E-08 65.5 11.9 111 80-192 514-649 (667)
128 KOG0353|consensus 97.3 0.00035 7.5E-09 65.3 5.2 108 79-191 316-466 (695)
129 COG1204 Superfamily II helicas 97.1 0.0016 3.4E-08 67.3 8.1 102 78-182 251-396 (766)
130 COG4096 HsdR Type I site-speci 97.1 0.0021 4.5E-08 65.6 8.6 110 80-191 426-545 (875)
131 PF13307 Helicase_C_2: Helicas 96.8 0.0039 8.4E-08 52.5 6.6 80 79-164 8-92 (167)
132 KOG0329|consensus 96.6 0.001 2.2E-08 59.4 2.0 45 139-183 302-346 (387)
133 CHL00122 secA preprotein trans 96.6 0.014 3E-07 60.5 10.3 83 40-151 407-490 (870)
134 TIGR01407 dinG_rel DnaQ family 96.6 0.02 4.4E-07 60.2 11.4 81 79-164 673-756 (850)
135 KOG0922|consensus 96.5 0.01 2.2E-07 59.2 8.4 115 79-196 257-392 (674)
136 KOG4150|consensus 96.3 0.019 4.1E-07 56.6 8.4 121 37-182 505-630 (1034)
137 COG4889 Predicted helicase [Ge 96.1 0.028 6E-07 58.1 9.0 115 77-191 457-585 (1518)
138 COG1643 HrpA HrpA-like helicas 96.0 0.046 1E-06 57.0 10.2 116 79-197 258-390 (845)
139 KOG0950|consensus 95.9 0.022 4.8E-07 59.0 7.1 107 72-181 452-598 (1008)
140 COG1199 DinG Rad3-related DNA 95.9 0.079 1.7E-06 53.9 11.3 80 79-165 478-560 (654)
141 KOG0952|consensus 95.7 0.041 9E-07 57.6 8.3 118 78-197 347-494 (1230)
142 PF06862 DUF1253: Protein of u 95.7 0.15 3.3E-06 49.4 11.7 111 79-193 299-414 (442)
143 PRK08074 bifunctional ATP-depe 95.7 0.091 2E-06 55.8 11.1 85 79-167 751-839 (928)
144 KOG0951|consensus 95.5 0.046 1E-06 58.3 7.8 71 108-181 608-689 (1674)
145 KOG1513|consensus 95.4 0.028 6.1E-07 57.3 5.9 89 125-215 849-945 (1300)
146 PRK11747 dinG ATP-dependent DN 95.0 0.21 4.5E-06 51.5 10.8 78 81-165 535-617 (697)
147 TIGR00604 rad3 DNA repair heli 94.8 0.28 6.1E-06 50.6 11.5 86 79-166 521-618 (705)
148 PRK12902 secA preprotein trans 94.7 0.22 4.7E-06 52.1 10.1 83 40-151 422-505 (939)
149 KOG0949|consensus 94.7 0.061 1.3E-06 56.1 6.0 74 112-187 967-1041(1330)
150 KOG0924|consensus 94.4 0.11 2.5E-06 52.3 6.9 120 79-201 562-704 (1042)
151 KOG0923|consensus 94.4 0.22 4.7E-06 50.2 8.7 109 79-195 472-607 (902)
152 PRK07246 bifunctional ATP-depe 94.2 0.55 1.2E-05 49.3 12.0 78 79-164 646-725 (820)
153 smart00492 HELICc3 helicase su 94.2 0.39 8.5E-06 39.3 8.7 53 110-164 25-79 (141)
154 PF02399 Herpes_ori_bp: Origin 93.3 0.93 2E-05 47.0 11.3 99 78-188 280-384 (824)
155 KOG0926|consensus 93.0 0.057 1.2E-06 55.3 2.2 79 109-193 606-703 (1172)
156 COG0653 SecA Preprotein transl 93.0 0.31 6.6E-06 50.6 7.4 114 40-183 412-536 (822)
157 KOG0947|consensus 92.8 0.46 1E-05 49.8 8.2 106 80-188 567-717 (1248)
158 COG1198 PriA Primosomal protei 92.7 0.66 1.4E-05 47.8 9.3 98 94-194 494-605 (730)
159 KOG0920|consensus 92.5 0.58 1.3E-05 49.2 8.7 136 37-198 391-548 (924)
160 smart00491 HELICc2 helicase su 92.3 0.7 1.5E-05 37.8 7.4 53 111-164 23-80 (142)
161 KOG0391|consensus 90.9 0.11 2.4E-06 55.3 1.5 16 2-17 892-907 (1958)
162 PRK10917 ATP-dependent DNA hel 90.0 1.9 4.2E-05 44.3 9.6 84 78-162 308-392 (681)
163 TIGR00595 priA primosomal prot 89.0 2.9 6.2E-05 41.5 9.7 98 36-161 4-101 (505)
164 COG1110 Reverse gyrase [DNA re 88.6 2.5 5.5E-05 44.9 9.1 74 81-163 336-416 (1187)
165 PRK05580 primosome assembly pr 87.6 3.8 8.3E-05 42.2 9.9 100 35-162 168-267 (679)
166 TIGR03117 cas_csf4 CRISPR-asso 87.3 5.6 0.00012 40.6 10.6 86 78-169 469-566 (636)
167 TIGR00643 recG ATP-dependent D 87.2 3.5 7.7E-05 42.0 9.3 84 78-162 282-366 (630)
168 KOG0388|consensus 85.7 0.26 5.6E-06 50.1 0.1 18 1-18 840-857 (1185)
169 COG1198 PriA Primosomal protei 85.0 1.7 3.6E-05 45.0 5.6 86 31-142 219-304 (730)
170 PRK14873 primosome assembly pr 84.7 4.7 0.0001 41.4 8.7 78 39-141 170-247 (665)
171 TIGR02562 cas3_yersinia CRISPR 83.7 7.9 0.00017 41.6 9.9 97 84-183 761-883 (1110)
172 TIGR00580 mfd transcription-re 81.2 10 0.00023 40.5 9.9 84 78-162 498-582 (926)
173 PF13607 Succ_CoA_lig: Succiny 80.8 9.3 0.0002 31.1 7.5 88 82-191 3-90 (138)
174 PRK13766 Hef nuclease; Provisi 80.8 75 0.0016 33.1 16.0 127 9-163 4-141 (773)
175 COG4581 Superfamily II RNA hel 79.7 3.7 8.1E-05 43.9 5.9 76 112-190 449-533 (1041)
176 PF03808 Glyco_tran_WecB: Glyc 76.7 27 0.00058 29.2 9.4 62 78-141 46-108 (172)
177 PRK10689 transcription-repair 76.3 18 0.00039 39.6 10.0 82 78-160 647-729 (1147)
178 PF10593 Z1: Z1 domain; Inter 73.4 37 0.00081 30.2 9.8 104 88-203 95-201 (239)
179 KOG0948|consensus 73.2 6.4 0.00014 40.7 5.3 117 79-199 382-543 (1041)
180 PF04364 DNA_pol3_chi: DNA pol 72.5 18 0.0004 29.2 7.0 83 43-164 15-97 (137)
181 TIGR00365 monothiol glutaredox 71.6 19 0.00041 27.2 6.5 58 79-139 10-73 (97)
182 cd03028 GRX_PICOT_like Glutare 70.4 22 0.00047 26.3 6.5 59 79-141 6-70 (90)
183 KOG0925|consensus 69.6 4 8.6E-05 40.2 2.8 61 136-198 314-391 (699)
184 TIGR00696 wecB_tagA_cpsF bacte 68.8 39 0.00085 28.6 8.5 62 78-141 46-107 (177)
185 PRK06646 DNA polymerase III su 67.7 8.1 0.00018 32.1 4.0 43 37-102 9-51 (154)
186 PRK10824 glutaredoxin-4; Provi 65.8 26 0.00057 27.5 6.4 64 79-146 13-83 (115)
187 cd03418 GRX_GRXb_1_3_like Glut 64.3 43 0.00094 23.1 6.9 58 82-142 1-59 (75)
188 cd06533 Glyco_transf_WecG_TagA 62.6 91 0.002 26.0 10.2 62 78-141 44-106 (171)
189 KOG2340|consensus 62.3 29 0.00063 34.7 7.1 110 80-193 552-667 (698)
190 PRK05728 DNA polymerase III su 62.0 85 0.0018 25.5 11.4 87 38-164 10-96 (142)
191 TIGR00614 recQ_fam ATP-depende 53.0 64 0.0014 31.5 8.1 80 80-163 51-137 (470)
192 TIGR03817 DECH_helic helicase/ 52.3 76 0.0016 33.2 8.8 79 79-163 80-167 (742)
193 KOG0347|consensus 50.9 47 0.001 33.5 6.5 60 78-142 259-321 (731)
194 cd01520 RHOD_YbbB Member of th 50.4 30 0.00066 27.2 4.5 38 78-118 84-122 (128)
195 PTZ00062 glutaredoxin; Provisi 49.2 1E+02 0.0022 26.7 7.9 61 79-143 111-177 (204)
196 cd01449 TST_Repeat_2 Thiosulfa 48.0 46 0.001 25.2 5.1 37 78-117 76-113 (118)
197 COG1200 RecG RecG-like helicas 46.6 1.5E+02 0.0032 30.6 9.4 78 78-159 309-390 (677)
198 PRK14701 reverse gyrase; Provi 46.6 99 0.0021 35.4 9.0 66 79-145 121-189 (1638)
199 cd01524 RHOD_Pyr_redox Member 46.1 26 0.00057 25.4 3.3 38 78-118 49-86 (90)
200 COG1110 Reverse gyrase [DNA re 45.8 74 0.0016 34.4 7.4 67 78-146 123-193 (1187)
201 PRK14873 primosome assembly pr 44.4 42 0.00091 34.6 5.4 80 93-188 440-535 (665)
202 PF08469 NPHI_C: Nucleoside tr 44.2 56 0.0012 26.8 5.0 34 183-216 9-47 (148)
203 cd03031 GRX_GRX_like Glutaredo 43.9 98 0.0021 25.4 6.6 46 82-130 1-53 (147)
204 TIGR02717 AcCoA-syn-alpha acet 43.6 2E+02 0.0042 28.1 9.7 90 79-190 149-238 (447)
205 TIGR01054 rgy reverse gyrase. 42.7 86 0.0019 34.6 7.7 82 79-161 120-207 (1171)
206 COG0553 HepA Superfamily II DN 41.0 2.5 5.5E-05 44.0 -4.1 40 141-182 485-524 (866)
207 cd01523 RHOD_Lact_B Member of 39.8 35 0.00075 25.2 3.1 38 78-118 59-96 (100)
208 PF04007 DUF354: Protein of un 39.1 1.5E+02 0.0032 27.9 7.8 49 36-113 6-54 (335)
209 cd01445 TST_Repeats Thiosulfat 38.5 78 0.0017 25.4 5.2 51 44-118 81-134 (138)
210 KOG1133|consensus 37.9 1.9E+02 0.0041 30.1 8.6 82 81-165 630-721 (821)
211 COG1205 Distinct helicase fami 36.9 1.3E+02 0.0029 32.0 7.9 59 81-145 116-178 (851)
212 PRK11776 ATP-dependent RNA hel 36.6 2.1E+02 0.0046 27.6 8.8 78 80-162 72-156 (460)
213 PLN00125 Succinyl-CoA ligase [ 36.5 1.6E+02 0.0036 27.2 7.5 67 79-146 149-217 (300)
214 COG0513 SrmB Superfamily II DN 36.2 1.3E+02 0.0029 29.8 7.4 73 83-160 102-181 (513)
215 PF12367 PFO_beta_C: Pyruvate 35.8 96 0.0021 22.0 4.6 47 156-203 16-62 (67)
216 smart00450 RHOD Rhodanese Homo 35.6 44 0.00095 23.8 3.0 38 78-118 54-92 (100)
217 COG1111 MPH1 ERCC4-like helica 35.3 1.9E+02 0.0041 28.9 7.9 114 81-205 59-184 (542)
218 COG0610 Type I site-specific r 34.7 66 0.0014 34.7 5.2 68 122-191 580-650 (962)
219 PHA03371 circ protein; Provisi 34.3 35 0.00075 30.2 2.5 44 145-188 30-87 (240)
220 KOG0923|consensus 34.2 68 0.0015 33.1 4.8 44 80-139 532-575 (902)
221 KOG0352|consensus 33.8 61 0.0013 31.7 4.3 63 81-146 62-125 (641)
222 PF12622 NpwBP: mRNA biogenesi 33.6 21 0.00046 23.6 0.9 12 156-167 3-14 (48)
223 PF00270 DEAD: DEAD/DEAH box h 31.8 2.5E+02 0.0054 22.2 7.3 74 81-159 45-125 (169)
224 PRK09570 rpoH DNA-directed RNA 31.5 1E+02 0.0022 22.6 4.3 61 115-193 16-78 (79)
225 cd01448 TST_Repeat_1 Thiosulfa 30.8 1.1E+02 0.0023 23.4 4.7 37 78-117 77-115 (122)
226 COG0626 MetC Cystathionine bet 30.3 3.4E+02 0.0073 26.2 8.8 112 40-180 62-175 (396)
227 cd01521 RHOD_PspE2 Member of t 30.3 66 0.0014 24.3 3.4 38 78-118 62-101 (110)
228 PRK13556 azoreductase; Provisi 29.9 36 0.00077 29.3 2.0 30 151-180 87-119 (208)
229 cd01534 4RHOD_Repeat_3 Member 29.1 64 0.0014 23.6 3.0 36 79-117 55-90 (95)
230 PF07652 Flavi_DEAD: Flaviviru 29.0 90 0.0019 25.8 4.0 112 39-187 14-129 (148)
231 cd03027 GRX_DEP Glutaredoxin ( 29.0 2E+02 0.0042 19.8 6.3 59 82-144 2-61 (73)
232 PRK11192 ATP-dependent RNA hel 28.8 3.1E+02 0.0068 26.1 8.5 77 80-161 73-155 (434)
233 PF09419 PGP_phosphatase: Mito 28.8 3.3E+02 0.0072 22.8 7.6 46 80-132 77-130 (168)
234 COG4098 comFA Superfamily II D 28.7 1.1E+02 0.0023 29.3 4.9 70 29-122 116-185 (441)
235 cd01529 4RHOD_Repeats Member o 28.7 90 0.0019 22.8 3.8 37 78-117 54-91 (96)
236 COG2927 HolC DNA polymerase II 27.6 96 0.0021 25.5 3.9 38 42-102 14-51 (144)
237 KOG0442|consensus 27.6 1.2E+02 0.0027 31.9 5.5 59 154-218 545-607 (892)
238 PRK09401 reverse gyrase; Revie 27.1 2.8E+02 0.0061 30.8 8.5 81 79-160 122-208 (1176)
239 COG0514 RecQ Superfamily II DN 26.9 1.4E+02 0.003 30.4 5.7 61 81-145 58-118 (590)
240 cd01447 Polysulfide_ST Polysul 26.2 52 0.0011 24.1 2.1 38 77-117 58-96 (103)
241 PRK04537 ATP-dependent RNA hel 26.0 2.9E+02 0.0063 27.8 8.0 77 80-161 84-167 (572)
242 PRK09751 putative ATP-dependen 25.6 2.5E+02 0.0055 32.0 7.8 79 79-162 36-133 (1490)
243 PF03709 OKR_DC_1_N: Orn/Lys/A 25.4 3.2E+02 0.0069 21.0 8.8 89 79-174 16-109 (115)
244 PRK11493 sseA 3-mercaptopyruva 25.4 1.4E+02 0.0029 27.0 5.0 37 78-117 229-266 (281)
245 COG2247 LytB Putative cell wal 25.3 1.8E+02 0.0039 27.3 5.6 60 79-141 75-139 (337)
246 cd01533 4RHOD_Repeat_2 Member 25.0 1.6E+02 0.0034 22.0 4.6 37 79-118 65-103 (109)
247 cd03030 GRX_SH3BGR Glutaredoxi 25.0 3E+02 0.0064 20.5 6.6 53 91-146 17-73 (92)
248 TIGR01389 recQ ATP-dependent D 24.8 7.2E+02 0.016 24.9 12.3 62 80-145 53-114 (591)
249 PF13245 AAA_19: Part of AAA d 24.7 1.2E+02 0.0027 21.6 3.7 43 39-100 20-62 (76)
250 cd01518 RHOD_YceA Member of th 24.0 77 0.0017 23.4 2.7 36 79-117 60-96 (101)
251 COG4152 ABC-type uncharacteriz 23.9 5.5E+02 0.012 23.5 8.3 76 2-118 139-215 (300)
252 COG1922 WecG Teichoic acid bio 23.8 5.4E+02 0.012 23.2 11.2 62 78-141 106-168 (253)
253 cd00268 DEADc DEAD-box helicas 23.5 4.2E+02 0.0092 21.8 12.5 80 79-163 68-153 (203)
254 PF00462 Glutaredoxin: Glutare 23.2 2.3E+02 0.0049 18.6 6.1 53 83-139 1-54 (60)
255 PRK10590 ATP-dependent RNA hel 23.1 4.8E+02 0.01 25.2 8.7 77 80-161 75-157 (456)
256 PHA03050 glutaredoxin; Provisi 23.1 3.5E+02 0.0075 20.7 7.0 64 79-143 11-78 (108)
257 PRK04837 ATP-dependent RNA hel 23.0 3.9E+02 0.0084 25.4 7.9 79 79-162 82-166 (423)
258 PLN02723 3-mercaptopyruvate su 23.0 1.8E+02 0.0039 26.9 5.4 37 78-117 267-304 (320)
259 KOG0389|consensus 22.8 4.1E+02 0.0088 28.3 8.1 77 84-164 452-535 (941)
260 TIGR02190 GlrX-dom Glutaredoxi 22.5 2.8E+02 0.0061 19.4 5.6 62 77-143 4-66 (79)
261 cd01527 RHOD_YgaP Member of th 22.4 1.2E+02 0.0026 22.1 3.4 38 78-117 52-89 (99)
262 cd05212 NAD_bind_m-THF_DH_Cycl 22.2 3.5E+02 0.0075 21.9 6.3 89 43-164 12-103 (140)
263 cd01526 RHOD_ThiF Member of th 22.2 72 0.0016 24.7 2.3 38 78-118 70-109 (122)
264 PRK13555 azoreductase; Provisi 22.0 64 0.0014 28.0 2.1 30 151-180 87-119 (208)
265 PRK10638 glutaredoxin 3; Provi 21.9 3E+02 0.0064 19.5 6.4 56 82-141 3-59 (83)
266 PF13087 AAA_12: AAA domain; P 21.7 3.8E+02 0.0083 22.0 6.9 50 80-143 112-165 (200)
267 COG1643 HrpA HrpA-like helicas 21.6 1.2E+02 0.0025 32.3 4.2 58 104-189 328-385 (845)
268 PF13086 AAA_11: AAA domain; P 21.4 3E+02 0.0065 22.9 6.2 49 39-102 27-75 (236)
269 KOG0701|consensus 21.2 82 0.0018 35.8 3.1 94 83-180 295-399 (1606)
270 cd01519 RHOD_HSP67B2 Member of 20.7 1.4E+02 0.0031 21.9 3.6 37 78-117 64-101 (106)
271 cd01535 4RHOD_Repeat_4 Member 20.6 2.2E+02 0.0048 22.9 4.9 36 79-117 48-84 (145)
272 cd01528 RHOD_2 Member of the R 20.2 1.3E+02 0.0028 22.1 3.2 37 79-118 57-94 (101)
273 cd00158 RHOD Rhodanese Homolog 20.0 1.5E+02 0.0033 20.5 3.5 38 78-117 48-85 (89)
No 1
>KOG0392|consensus
Probab=100.00 E-value=3.7e-68 Score=532.20 Aligned_cols=275 Identities=61% Similarity=1.002 Sum_probs=248.3
Q ss_pred CHHHHHhhcCCCcCcCCCChhhHHHhhc---CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 1 SLRYLQSVCNHPKLVLGPSHAQYEALVS---RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77 (292)
Q Consensus 1 al~~Lrk~c~hP~lv~~~~~~~~~~~~~---~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (292)
|||||||+||||+||.++.||....+.. ..+.++|++++||||.||++||.+||||..+..+. ...+.
T Consensus 1267 aLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~---------g~~s~ 1337 (1549)
T KOG0392|consen 1267 ALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEV---------GTPSD 1337 (1549)
T ss_pred HHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccc---------cCcch
Confidence 6999999999999999999998887766 56678999999999999999999999997765321 12233
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+||+|||||+++++|++++.|.+..++.+.|+++||++++.+|++++++||++++++|||++|.+||.||||++|++|
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhc-c
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC-L 236 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~-~ 236 (292)
||+|++|||+++.|||+|+||+||+|.|+|||||++||+||+||.+|++|.+++++|++.+|..+..|++++++|||+ .
T Consensus 1418 VFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~~ 1497 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTVL 1497 (1549)
T ss_pred EEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCcccccC----CCCCCCCCccccccCCCCCcchhhhhhhcchhHHHHhcC
Q psy15261 237 DGQDSRQEAG----SSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLN 285 (292)
Q Consensus 237 ~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~ 285 (292)
+++.++...+ +-.+-.+..+.++.+|+++|||+||+ |||+++|+.+|+
T Consensus 1498 ~gd~~~~kg~ed~a~~~g~~~t~k~~l~~L~elWDesQYd-eynld~Fl~tl~ 1549 (1549)
T KOG0392|consen 1498 DGDGAAKKGGEDPAGKAGLKGTMKPILGNLAELWDESQYD-EYNLDSFLRTLN 1549 (1549)
T ss_pred CCchhhhcCCCCchhhccccccchHhhccHHhhcChhhhh-hhhHHHHHhcCC
Confidence 5554332111 11123455788999999999999998 899999999885
No 2
>KOG0385|consensus
Probab=100.00 E-value=1.3e-46 Score=364.87 Aligned_cols=206 Identities=42% Similarity=0.651 Sum_probs=186.5
Q ss_pred HHHHHhhcCCCcCcCCCCh-hhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSH-AQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQ 80 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~-~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (292)
+|.||||||||||+.+.++ |+|.. .-+.+..||||..|.+||..+. ..|
T Consensus 438 ~mQLRKccnHPYLF~g~ePg~pytt-------dehLv~nSGKm~vLDkLL~~Lk-----------------------~~G 487 (971)
T KOG0385|consen 438 MMQLRKCCNHPYLFDGAEPGPPYTT-------DEHLVTNSGKMLVLDKLLPKLK-----------------------EQG 487 (971)
T ss_pred HHHHHHhcCCccccCCCCCCCCCCc-------chHHHhcCcceehHHHHHHHHH-----------------------hCC
Confidence 6899999999999998766 55542 3467889999999999999984 789
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCCCCCEEEE
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
+|||||||+..++|+|+.++ ...++.|+++||+++.++|...++.||.++ .+.|+++||++||.||||+.|++||+
T Consensus 488 hRVLIFSQmt~mLDILeDyc---~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 488 HRVLIFSQMTRMLDILEDYC---MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred CeEEEeHHHHHHHHHHHHHH---HhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 99999999999999999999 667999999999999999999999999755 58899999999999999999999999
Q ss_pred eCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCC---ccccccCChHHHHHhhcc
Q psy15261 160 VDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDLFCL 236 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~---~~~~~~~~~~el~dlf~~ 236 (292)
||.+|||..+.||++|+|||||+++|+||||++++|||++|+++...|..+.+.|++.+ .........+++.+++.+
T Consensus 565 yDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~ 644 (971)
T KOG0385|consen 565 YDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRF 644 (971)
T ss_pred ecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999987 222234678889999888
Q ss_pred CCCC
Q psy15261 237 DGQD 240 (292)
Q Consensus 237 ~~~~ 240 (292)
+.+.
T Consensus 645 g~~~ 648 (971)
T KOG0385|consen 645 GADP 648 (971)
T ss_pred Cchh
Confidence 7654
No 3
>KOG0384|consensus
Probab=100.00 E-value=1.9e-45 Score=370.44 Aligned_cols=213 Identities=39% Similarity=0.593 Sum_probs=188.7
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhc-CC-CCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVS-RP-GLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILT 79 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~-~~-~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (292)
+|.||||||||||+.++++.-+..... .. ...-..|..||||..|.+||..+. ..
T Consensus 642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk-----------------------~~ 698 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLK-----------------------EG 698 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHh-----------------------cC
Confidence 689999999999999887665444322 10 112257999999999999999985 67
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCCCCEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
|||||||+|+..|+|+|+++| ...+++|-+|||++...-|+.++++||.+++ -.|||+||++||.||||+.|++||
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL---~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYL---SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHH---HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 999999999999999999999 4558999999999999999999999997544 569999999999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCc-----cccccCChHHHHHh
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSEN-----RNLDTMATGKILDL 233 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~-----~~~~~~~~~el~dl 233 (292)
+||.+|||..+.||+.|||||||++.|.|||||+++|+|+.|+++.+.|+.+..+|+...+ ..-..++.+||-++
T Consensus 776 IFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaI 855 (1373)
T KOG0384|consen 776 IFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAI 855 (1373)
T ss_pred EeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997554 34467899999999
Q ss_pred hccCCCC
Q psy15261 234 FCLDGQD 240 (292)
Q Consensus 234 f~~~~~~ 240 (292)
+++++.+
T Consensus 856 LKfGA~~ 862 (1373)
T KOG0384|consen 856 LKFGAYE 862 (1373)
T ss_pred HHhchHH
Confidence 9998765
No 4
>KOG0387|consensus
Probab=100.00 E-value=1.3e-43 Score=345.45 Aligned_cols=207 Identities=43% Similarity=0.678 Sum_probs=186.4
Q ss_pred CHHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCc-ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNL-SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILT 79 (292)
Q Consensus 1 al~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~-~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (292)
++.-|||+||||.|+.....+. .++++. .++++|+|+..|.+||..+. ..
T Consensus 495 Gi~iLrkICnHPdll~~~~~~~------~~~~D~~g~~k~sGKm~vl~~ll~~W~-----------------------kq 545 (923)
T KOG0387|consen 495 GIDILRKICNHPDLLDRRDEDE------KQGPDYEGDPKRSGKMKVLAKLLKDWK-----------------------KQ 545 (923)
T ss_pred chHHHHhhcCCcccccCccccc------ccCCCcCCChhhcchHHHHHHHHHHHh-----------------------hC
Confidence 4678999999999987642111 123334 78999999999999999994 78
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
|+|+|+|+|...|+++|+.+|.. .+++.|+++||.++...|+.+|++||++..+.|||++|++||.|+||++||+||+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~--~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR--AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh--cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 99999999999999999999932 5799999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhccCCC
Q psy15261 160 VDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ 239 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~~~~~ 239 (292)
|||+|||..+.||-.|+||+||++.|.||||++.|||||+||.+|-+|+.+.+.++.+.... .-+...++.|||.+...
T Consensus 624 fDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~-RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 624 FDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQR-RFFKGNDLHDLFSLKDF 702 (923)
T ss_pred ECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHh-hhcccccHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999865533 55778899999998764
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2.4e-40 Score=340.64 Aligned_cols=206 Identities=37% Similarity=0.535 Sum_probs=179.2
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
++.||+|||||+|+........ ....-+.+..|+|+..|.+||..+. ..++
T Consensus 438 lmqLRk~cnHP~L~~~~ep~~~------~~~~e~lie~SgKl~lLdkLL~~Lk-----------------------~~g~ 488 (1033)
T PLN03142 438 AMQLRKCCNHPYLFQGAEPGPP------YTTGEHLVENSGKMVLLDKLLPKLK-----------------------ERDS 488 (1033)
T ss_pred HHHHHHHhCCHHhhhcccccCc------ccchhHHhhhhhHHHHHHHHHHHHH-----------------------hcCC
Confidence 6789999999999875432100 0011245778999999999999874 5789
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCCCCCEEEEe
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTVIFV 160 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~~a~~vI~~ 160 (292)
||||||||..++++|+++| ...++.+++|+|+++..+|+.++++|+.++ ...|+|+||++||.||||+.|++||+|
T Consensus 489 KVLIFSQft~~LdiLed~L---~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 489 RVLIFSQMTRLLDILEDYL---MYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred eEEeehhHHHHHHHHHHHH---HHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 9999999999999999999 456899999999999999999999998654 456899999999999999999999999
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccc-cccCChHHHHHhhccCCC
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRN-LDTMATGKILDLFCLDGQ 239 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~-~~~~~~~el~dlf~~~~~ 239 (292)
|++|||..+.||+||+||+||+++|+||+|+++||||++|++++..|..+...|++.+... ...++.++|.+||.++++
T Consensus 566 D~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 566 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred CCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChH
Confidence 9999999999999999999999999999999999999999999999999999999865422 246788999999987654
No 6
>KOG0389|consensus
Probab=100.00 E-value=1.3e-37 Score=303.27 Aligned_cols=173 Identities=43% Similarity=0.583 Sum_probs=157.8
Q ss_pred cccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC
Q psy15261 36 DIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115 (292)
Q Consensus 36 ~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G 115 (292)
.|-.|+|+..|..||.++. ..|+|||||+||+.|+|+|+-.| ...++.|+++||
T Consensus 756 ~~mdSgK~r~L~~LLp~~k-----------------------~~G~RVLiFSQFTqmLDILE~~L---~~l~~~ylRLDG 809 (941)
T KOG0389|consen 756 LWMDSGKCRKLKELLPKIK-----------------------KKGDRVLIFSQFTQMLDILEVVL---DTLGYKYLRLDG 809 (941)
T ss_pred hhhhhhhHhHHHHHHHHHh-----------------------hcCCEEEEeeHHHHHHHHHHHHH---HhcCceEEeecC
Confidence 4778999999999999984 78999999999999999999999 667999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 116 SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 116 ~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
++....|+.+|+.|+.+.++.|+|+||++||.||||+.||+||++|.++||..+.||.+||||+||+++|+|||||+++|
T Consensus 810 sTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 810 STQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred CccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhc
Q psy15261 196 LEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC 235 (292)
Q Consensus 196 vEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~ 235 (292)
|||.|+++.+.|..+...+.+++....... ...+.+|+.
T Consensus 890 IEE~I~~lA~~KL~Le~~lt~~~k~~~~e~-~~~v~~lL~ 928 (941)
T KOG0389|consen 890 IEEGILRLAKTKLALEADLTEDGKGVEDEG-EKTVGKLLE 928 (941)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchhhhh-hhHHHHHHH
Confidence 999999999999999998887766443332 233444443
No 7
>KOG0390|consensus
Probab=100.00 E-value=5.2e-37 Score=304.70 Aligned_cols=214 Identities=34% Similarity=0.477 Sum_probs=179.3
Q ss_pred HHHHHhhcCCCcCcC-CCChhh---H---HHhhc--CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVL-GPSHAQ---Y---EALVS--RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGA 72 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~-~~~~~~---~---~~~~~--~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~ 72 (292)
+.+|+++||||.|+. ...... + ..... .......+...|+|+..|..++..++
T Consensus 530 ~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~------------------ 591 (776)
T KOG0390|consen 530 ITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR------------------ 591 (776)
T ss_pred HHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh------------------
Confidence 578999999999995 111000 0 01111 11223345567899999999986654
Q ss_pred CCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCe-eEEEecccccccccCC
Q psy15261 73 PPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTI-DVLLLTTQVGGLGLNL 151 (292)
Q Consensus 73 ~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~-~vlLlst~~~~~GlnL 151 (292)
.....++++.++++.+++.++... +..|+.++++||.++..+|+.+++.||+.++. .|||+|++|||+||||
T Consensus 592 ----ek~~~~~v~Isny~~tldl~e~~~---~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinL 664 (776)
T KOG0390|consen 592 ----EKLLVKSVLISNYTQTLDLFEQLC---RWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNL 664 (776)
T ss_pred ----hhcceEEEEeccHHHHHHHHHHHH---hhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceee
Confidence 134567888888999999999998 55699999999999999999999999987666 8999999999999999
Q ss_pred CCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHH
Q psy15261 152 TGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKIL 231 (292)
Q Consensus 152 ~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~ 231 (292)
.+|++||+||++|||+.+.|||+|+||.||+++|+||||++.||+||+||++|-.|..+...+++.....-.....+++.
T Consensus 665 iGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~ 744 (776)
T KOG0390|consen 665 IGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLK 744 (776)
T ss_pred cccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776777778889
Q ss_pred HhhccCCCC
Q psy15261 232 DLFCLDGQD 240 (292)
Q Consensus 232 dlf~~~~~~ 240 (292)
.+|....++
T Consensus 745 ~lf~~~~~~ 753 (776)
T KOG0390|consen 745 TLFDLELDT 753 (776)
T ss_pred HHHhhhccc
Confidence 999877664
No 8
>KOG0391|consensus
Probab=100.00 E-value=2.3e-36 Score=301.92 Aligned_cols=182 Identities=40% Similarity=0.607 Sum_probs=171.8
Q ss_pred CCCcccccc-cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCce
Q psy15261 31 GLNLSDIRH-AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVT 109 (292)
Q Consensus 31 ~~~~~~~~~-S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~ 109 (292)
-+.++.|++ .+||+.|.=||..+. ..|||||||+|+..|+|+|+.+| ...|+.
T Consensus 1249 FPelrLiqyDcGKLQtLAiLLqQLk-----------------------~eghRvLIfTQMtkmLDVLeqFL---nyHgyl 1302 (1958)
T KOG0391|consen 1249 FPELRLIQYDCGKLQTLAILLQQLK-----------------------SEGHRVLIFTQMTKMLDVLEQFL---NYHGYL 1302 (1958)
T ss_pred CcchheeecccchHHHHHHHHHHHH-----------------------hcCceEEehhHHHHHHHHHHHHH---hhcceE
Confidence 345566665 589999999999985 68999999999999999999999 778999
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
|+++||.++.++|+.++++||.|..+.|+|+||+.||.|+||++|++|||||.+|||..+.||-+|||||||+++|+|||
T Consensus 1303 Y~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYR 1382 (1958)
T KOG0391|consen 1303 YVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 1382 (1958)
T ss_pred EEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhccCC
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDG 238 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~~~~ 238 (292)
||++.|||++|++....|+.+-+-++..++-...-++...+.|||....
T Consensus 1383 LISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1383 LISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred eeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCC
Confidence 9999999999999999999999999999888888889999999999854
No 9
>KOG1002|consensus
Probab=100.00 E-value=1.6e-34 Score=270.11 Aligned_cols=179 Identities=32% Similarity=0.503 Sum_probs=167.6
Q ss_pred CcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEE
Q psy15261 33 NLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLR 112 (292)
Q Consensus 33 ~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~ 112 (292)
.+.+|+.|.|+++|.+-|.-+. .-...-|.+||+||+.++|.|+-.| +..|+.++.
T Consensus 612 nm~~~qsSTKIEAL~EEl~~l~---------------------~rd~t~KsIVFSQFTSmLDLi~~rL---~kaGfscVk 667 (791)
T KOG1002|consen 612 NMDDWQSSTKIEALVEELYFLR---------------------ERDRTAKSIVFSQFTSMLDLIEWRL---GKAGFSCVK 667 (791)
T ss_pred chhhhcchhHHHHHHHHHHHHH---------------------HcccchhhhhHHHHHHHHHHHHHHh---hccCceEEE
Confidence 4467999999999999887663 0134568999999999999999999 778999999
Q ss_pred EECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEe
Q psy15261 113 LDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192 (292)
Q Consensus 113 i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 192 (292)
+.|++++..|...++.|.+++.|+|+|+|.++||..|||+.|++|+.+||||||+...||.+|+|||||.++|.|.||+.
T Consensus 668 L~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i 747 (791)
T KOG1002|consen 668 LVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI 747 (791)
T ss_pred eccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhc
Q psy15261 193 KNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC 235 (292)
Q Consensus 193 ~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~ 235 (292)
++|||++|.++|+.|..++++.+++.+..+..++.+++.=||+
T Consensus 748 EnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 748 ENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred hccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 9999999999999999999999999998888999999998885
No 10
>KOG0386|consensus
Probab=100.00 E-value=3.8e-33 Score=277.49 Aligned_cols=189 Identities=41% Similarity=0.620 Sum_probs=167.6
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
.+.||||||||+++...+.. +.. +......+..|||+..|..+|-.+. +.||
T Consensus 676 imqLRKiCNHP~lf~~ve~~-~~~----~~~~~dL~R~sGKfELLDRiLPKLk-----------------------atgH 727 (1157)
T KOG0386|consen 676 IMQLRKLCNHPYLFANVENS-YTL----HYDIKDLVRVSGKFELLDRILPKLK-----------------------ATGH 727 (1157)
T ss_pred hHHHHHhcCCchhhhhhccc-ccc----ccChhHHHHhccHHHHHHhhhHHHH-----------------------hcCc
Confidence 57899999999998543211 110 0111256889999999999999985 7899
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCCCCCEEEEe
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTVIFV 160 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~~a~~vI~~ 160 (292)
+||.|||.+..+++++.+| ...++.|.++||++...+|..+++.||..+ .+++||++|++||.|+||+.|++||+|
T Consensus 728 RVLlF~qMTrlmdimEdyL---~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 728 RVLLFSQMTRLMDILEDYL---QIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred chhhHHHHHHHHHHHHHHH---hhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 9999999999999999999 777999999999999999999999999744 477999999999999999999999999
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRN 221 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~ 221 (292)
|.+|||..+.||.+|+|||||++.|.|+|+++.+++||+|+..+..|..+...|+..+...
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fd 865 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFD 865 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999876533
No 11
>KOG0388|consensus
Probab=99.98 E-value=2.7e-32 Score=263.32 Aligned_cols=156 Identities=46% Similarity=0.713 Sum_probs=149.4
Q ss_pred cccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC
Q psy15261 36 DIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115 (292)
Q Consensus 36 ~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G 115 (292)
-|..|+||..|.+||..+. +.|||||+|.|.+.|+++++++| ...++.|.+++|
T Consensus 1023 FitdSgKL~~LDeLL~kLk-----------------------aegHRvL~yfQMTkM~dl~EdYl---~yr~Y~ylRLDG 1076 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLK-----------------------AEGHRVLMYFQMTKMIDLIEDYL---VYRGYTYLRLDG 1076 (1185)
T ss_pred hhccccceeeHHHHHHHhh-----------------------cCCceEEehhHHHHHHHHHHHHH---HhhccceEEecC
Confidence 4788999999999999985 78999999999999999999999 677999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 116 SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 116 ~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
+....+|..++..|+. +.+.|+|+||++||.||||+.|++|||||.+|||..+.||++|+||.||++.|+||||+++||
T Consensus 1077 Ssk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1077 SSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 9999999999999996 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy15261 196 LEEKIMNLQKFKLLTANTVINSE 218 (292)
Q Consensus 196 vEe~i~~~~~~K~~~~~~vv~~~ 218 (292)
|||+|+.+..+|..+...|+.+.
T Consensus 1156 vEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1156 VEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred HHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999888754
No 12
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=1.5e-31 Score=275.71 Aligned_cols=209 Identities=43% Similarity=0.666 Sum_probs=179.3
Q ss_pred HHHHHhhcCCCcCcCCCC-hhhHHHhh------cCCCCCccccccc-CCHHHHHHHH-HHcCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPS-HAQYEALV------SRPGLNLSDIRHA-AKLPALKQLL-MDCGIGASPGMSGSGPHYDPGA 72 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~-~~~~~~~~------~~~~~~~~~~~~S-~Kl~~L~~lL-~~~~~~~~~~~~~~~~~~~~~~ 72 (292)
+++||++|+||+++.... ........ ......-..+..| +|+..+.++| ....
T Consensus 645 ~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~------------------ 706 (866)
T COG0553 645 LTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL------------------ 706 (866)
T ss_pred HHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH------------------
Confidence 688999999999998762 11111000 0000011345677 8999999999 5552
Q ss_pred CCCCCCCCC--eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccC
Q psy15261 73 PPPSILTQH--RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN 150 (292)
Q Consensus 73 ~~~~~~~~~--KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gln 150 (292)
..++ |++||+|+..++++++..|. ..++.+++++|+++.+.|..++++|++++...|+++++++||.|+|
T Consensus 707 -----~~~~~~kvlifsq~t~~l~il~~~l~---~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~gln 778 (866)
T COG0553 707 -----EEGHYHKVLIFSQFTPVLDLLEDYLK---ALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLN 778 (866)
T ss_pred -----hhcccccEEEEeCcHHHHHHHHHHHH---hcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEeccccccee
Confidence 5677 99999999999999999994 4458999999999999999999999988788999999999999999
Q ss_pred CCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcC-CccccccCChHH
Q psy15261 151 LTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINS-ENRNLDTMATGK 229 (292)
Q Consensus 151 L~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~-~~~~~~~~~~~e 229 (292)
|+.|++||+||++|||..+.||++|+||+||+++|.||++++++|+||+|..++..|..+...+++. .......++.++
T Consensus 779 Lt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 858 (866)
T COG0553 779 LTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIED 858 (866)
T ss_pred ecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 777788899999
Q ss_pred HHHhhcc
Q psy15261 230 ILDLFCL 236 (292)
Q Consensus 230 l~dlf~~ 236 (292)
+.++|..
T Consensus 859 ~~~l~~~ 865 (866)
T COG0553 859 LLDLFSL 865 (866)
T ss_pred HHHHhcc
Confidence 9999864
No 13
>KOG1015|consensus
Probab=99.97 E-value=3.4e-32 Score=268.41 Aligned_cols=183 Identities=31% Similarity=0.490 Sum_probs=165.1
Q ss_pred CcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCC-------
Q psy15261 33 NLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEM------- 105 (292)
Q Consensus 33 ~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~------- 105 (292)
....+.+|+||..|.+||..|. .-|.|+|||+|+...++.|+.+|.....
T Consensus 1118 d~~v~~~SgKmiLLleIL~mce-----------------------eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d 1174 (1567)
T KOG1015|consen 1118 DAEVLEHSGKMILLLEILRMCE-----------------------EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKD 1174 (1567)
T ss_pred hhhhhhcCcceehHHHHHHHHH-----------------------HhcceeEEeecccchhHHHHHHHHhhcccCccccc
Confidence 4467889999999999999994 6789999999999999999999943211
Q ss_pred ------------CCceEEEEECCCCHHHHHHHHHHhcCCCC--eeEEEecccccccccCCCCCCEEEEeCCCCChhhHHH
Q psy15261 106 ------------PGVTYLRLDGSVVSTARHAIVTKFNSDPT--IDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQ 171 (292)
Q Consensus 106 ------------~~~~~~~i~G~~~~~~R~~~v~~F~~~~~--~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Q 171 (292)
.|..|++|+|++...+|+.++.+||...+ .+++|+||++|+.|+||..||+||+||-.|||..+.|
T Consensus 1175 ~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQ 1254 (1567)
T KOG1015|consen 1175 KPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQ 1254 (1567)
T ss_pred cccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchH
Confidence 26789999999999999999999997655 5579999999999999999999999999999999999
Q ss_pred HhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhccCCC
Q psy15261 172 AMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ 239 (292)
Q Consensus 172 a~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~~~~~ 239 (292)
+|=|+||+||+++|+||||++.||+|++||++|..|+.++..||+... .-...+.+++.+||.+..+
T Consensus 1255 SIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQ-v~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1255 SIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQ-VERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHH-HHHHhhHhhhHHHhhcCCc
Confidence 999999999999999999999999999999999999999999998544 2356788999999999864
No 14
>KOG4439|consensus
Probab=99.97 E-value=4.2e-31 Score=255.21 Aligned_cols=175 Identities=33% Similarity=0.533 Sum_probs=159.8
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
...|.|+..+.+.|..+. ....+|++|.+||..+++++...| ...|+.|..++|.
T Consensus 725 ~r~S~Ki~~~l~~le~i~----------------------~~skeK~viVSQwtsvLniv~~hi---~~~g~~y~si~Gq 779 (901)
T KOG4439|consen 725 DRPSCKIAMVLEILETIL----------------------TSSKEKVVIVSQWTSVLNIVRKHI---QKGGHIYTSITGQ 779 (901)
T ss_pred ccchhHHHHHHHHHHHHh----------------------hcccceeeehhHHHHHHHHHHHHH---hhCCeeeeeecCc
Confidence 446788888888888763 246799999999999999999999 6669999999999
Q ss_pred CCHHHHHHHHHHhcCC-CCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 117 VVSTARHAIVTKFNSD-PTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~-~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
+..++|+.+++.||.. ++.+|+|++..+||.||||++|||+|++|++|||..+.||.+|++|+||+++|+||||+++||
T Consensus 780 v~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 780 VLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred cchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 9999999999999964 448999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-ccccCChHHHHHhhcc
Q psy15261 196 LEEKIMNLQKFKLLTANTVINSENR-NLDTMATGKILDLFCL 236 (292)
Q Consensus 196 vEe~i~~~~~~K~~~~~~vv~~~~~-~~~~~~~~el~dlf~~ 236 (292)
+|.+|..+|..|..++..|+.+... .+..++..+|..||.+
T Consensus 860 vEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 860 VEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFGL 901 (901)
T ss_pred HHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhCC
Confidence 9999999999999999999985543 6788899999999964
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=1.6e-26 Score=237.82 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=144.4
Q ss_pred cccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC
Q psy15261 36 DIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115 (292)
Q Consensus 36 ~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G 115 (292)
.++.++|+..|.++|... .++|+||||++..+++.|...|.. ..|++++.+||
T Consensus 474 ~~~~d~Ki~~L~~~L~~~-------------------------~~~KvLVF~~~~~t~~~L~~~L~~--~~Gi~~~~ihG 526 (956)
T PRK04914 474 WWNFDPRVEWLIDFLKSH-------------------------RSEKVLVICAKAATALQLEQALRE--REGIRAAVFHE 526 (956)
T ss_pred ccccCHHHHHHHHHHHhc-------------------------CCCeEEEEeCcHHHHHHHHHHHhh--ccCeeEEEEEC
Confidence 356689999999999774 478999999999999999999932 34899999999
Q ss_pred CCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 116 SVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 116 ~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+++..+|.+++++|+.++ +++||| +|++||+|+|++.|++||+||+||||..+.||+||+||+||+++|.||.++.++
T Consensus 527 ~~s~~eR~~~~~~F~~~~~~~~VLI-sTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 527 GMSIIERDRAAAYFADEEDGAQVLL-CSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred CCCHHHHHHHHHHHhcCCCCccEEE-echhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 999999999999999753 566665 669999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCccccccC
Q psy15261 195 TLEEKIMNLQKFKLLTANTVINSENRNLDTM 225 (292)
Q Consensus 195 TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~ 225 (292)
|+++.|+++...|.++++.++.+.......+
T Consensus 606 t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~ 636 (956)
T PRK04914 606 TAQERLFRWYHEGLNAFEHTCPTGRALYDEF 636 (956)
T ss_pred CHHHHHHHHHhhhcCceeccCCCHHHHHHHH
Confidence 9999999999999999888887766554433
No 16
>KOG1000|consensus
Probab=99.93 E-value=2.2e-25 Score=209.03 Aligned_cols=158 Identities=30% Similarity=0.437 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
-.|+.++++.|.+-..- ...++.|+|||+++..++|.|+.++ ...++..++|||++++
T Consensus 471 iaK~~av~eyi~~~~~l-------------------~d~~~~KflVFaHH~~vLd~Iq~~~---~~r~vg~IRIDGst~s 528 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFL-------------------PDAPPRKFLVFAHHQIVLDTIQVEV---NKRKVGSIRIDGSTPS 528 (689)
T ss_pred ccccHHHHHHHHhCccc-------------------ccCCCceEEEEehhHHHHHHHHHHH---HHcCCCeEEecCCCCc
Confidence 46888999988772100 0267899999999999999999999 5568999999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHH
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~ 199 (292)
.+|+-+++.|+.+..+.|-+++..++|.||+|+.|+.|+|.+++|||....||.+|+||+||+..|.||+|+++||.|+.
T Consensus 529 ~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy 608 (689)
T KOG1000|consen 529 HRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDY 608 (689)
T ss_pred hhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc
Q psy15261 200 IMNLQKFKLLTANTVINSEN 219 (292)
Q Consensus 200 i~~~~~~K~~~~~~vv~~~~ 219 (292)
++.....|.+....+-.+.+
T Consensus 609 ~Wp~l~~KL~vl~s~gl~s~ 628 (689)
T KOG1000|consen 609 MWPMLQQKLDVLGSVGLSSD 628 (689)
T ss_pred HHHHHHHHHHHHhhcccCcc
Confidence 99999999998776654433
No 17
>KOG1016|consensus
Probab=99.92 E-value=3.1e-25 Score=216.09 Aligned_cols=164 Identities=35% Similarity=0.578 Sum_probs=150.4
Q ss_pred CCCCCCCeEEEEeccHHHHHHHHHHHhccCCC---------------CceEEEEECCCCHHHHHHHHHHhcCCCCee-EE
Q psy15261 75 PSILTQHRALIFCQLRAMLDIVENDLFKCEMP---------------GVTYLRLDGSVVSTARHAIVTKFNSDPTID-VL 138 (292)
Q Consensus 75 ~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~---------------~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~-vl 138 (292)
.+...|.|+|||+|....++.|+.+|.++..+ +..|.+++|.++..+|++++++||+.+++. .+
T Consensus 714 es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlf 793 (1387)
T KOG1016|consen 714 ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLF 793 (1387)
T ss_pred cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeee
Confidence 34678999999999999999999999665443 357889999999999999999999988887 88
Q ss_pred EecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy15261 139 LLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSE 218 (292)
Q Consensus 139 Llst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~ 218 (292)
++++++|..|+||..|+++|+||..|||..+.||++|++|+||+|+|+|||||+..++|.+||.+|-.|+.+.+.||++.
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~ 873 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA 873 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccCChHHHHHhhccCCC
Q psy15261 219 NRNLDTMATGKILDLFCLDGQ 239 (292)
Q Consensus 219 ~~~~~~~~~~el~dlf~~~~~ 239 (292)
+.. ..++..|+..|+...+.
T Consensus 874 np~-an~s~Ke~enLl~~~ea 893 (1387)
T KOG1016|consen 874 NPD-ANISQKELENLLMYDEA 893 (1387)
T ss_pred Ccc-ccccHHHHHHHhhhhhc
Confidence 765 56889999999887663
No 18
>KOG1001|consensus
Probab=99.87 E-value=2.8e-23 Score=207.08 Aligned_cols=134 Identities=39% Similarity=0.590 Sum_probs=128.2
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEe
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 160 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~ 160 (292)
.+++||+|+..+++.++..| ...++.+.+++|.++...|.+.+..|..++.+.|++++.++|+.|+||+.|+||+.+
T Consensus 540 ~kiiifsq~~~~l~l~~~~l---~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRL---FFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred CceeeehhHHHHHHHhhhhh---hhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 39999999999999999999 567999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINS 217 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~ 217 (292)
||+|||..+.||++|+||+||+++|.|+||+..+|+|++|.++|++|..+.....+.
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999999999988776653
No 19
>PRK13766 Hef nuclease; Provisional
Probab=99.78 E-value=2.8e-18 Score=176.30 Aligned_cols=149 Identities=24% Similarity=0.306 Sum_probs=126.0
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC-
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS- 116 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~- 116 (292)
..+||+..|.++|.+..- ...+.|+||||++..+++.|.+.| ...++.+..++|.
T Consensus 344 ~~~pK~~~L~~il~~~~~---------------------~~~~~kvlIF~~~~~t~~~L~~~L---~~~~~~~~~~~g~~ 399 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLG---------------------KNPDSRIIVFTQYRDTAEKIVDLL---EKEGIKAVRFVGQA 399 (773)
T ss_pred cCChHHHHHHHHHHHHHh---------------------cCCCCeEEEEeCcHHHHHHHHHHH---HhCCCceEEEEccc
Confidence 457999999999988620 136789999999999999999999 4568889999997
Q ss_pred -------CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 117 -------VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 117 -------~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
+++.+|.+++.+|+. +.+.+| ++|.++++|+|++.+++||+||++||+..+.||+||++|.|+ +.||.
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~-g~~~vL-vaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~ 474 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRA-GEFNVL-VSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVV 474 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHc-CCCCEE-EECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEE
Confidence 888899999999995 456665 477899999999999999999999999999998888888765 67899
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHh
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVI 215 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv 215 (292)
|++.+|.||.+|....+|...+...+
T Consensus 475 l~~~~t~ee~~y~~~~~ke~~~~~~l 500 (773)
T PRK13766 475 LIAKGTRDEAYYWSSRRKEKKMKEEL 500 (773)
T ss_pred EEeCCChHHHHHHHhhHHHHHHHHHH
Confidence 99999999999987777766654333
No 20
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=3.3e-18 Score=136.55 Aligned_cols=120 Identities=33% Similarity=0.468 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
+|+..+.+++.... ..+.++||||.+...++.+.+.|. .++..+..++|+++..
T Consensus 12 ~k~~~i~~~i~~~~-----------------------~~~~~~lvf~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~ 65 (131)
T cd00079 12 EKLEALLELLKEHL-----------------------KKGGKVLIFCPSKKMLDELAELLR---KPGIKVAALHGDGSQE 65 (131)
T ss_pred HHHHHHHHHHHhcc-----------------------cCCCcEEEEeCcHHHHHHHHHHHH---hcCCcEEEEECCCCHH
Confidence 59999999998862 367899999999999999999994 3678999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 121 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 121 ~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+|..++..|+.+. ..+|+++.++++|+|++.+++||+++++|++..+.|++||++|.||++.|.+|
T Consensus 66 ~~~~~~~~f~~~~--~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 66 EREEVLKDFREGE--IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHHHHHHHHHcCC--CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999644 34566789999999999999999999999999999999999999998777764
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=2.5e-16 Score=158.29 Aligned_cols=133 Identities=20% Similarity=0.303 Sum_probs=114.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|+.++..|+.... ..++|+||||++...++.+...| + +..++|.++
T Consensus 478 np~K~~~~~~Li~~he-----------------------~~g~kiLVF~~~~~~l~~~a~~L------~--~~~I~G~ts 526 (732)
T TIGR00603 478 NPNKFRACQFLIRFHE-----------------------QRGDKIIVFSDNVFALKEYAIKL------G--KPFIYGPTS 526 (732)
T ss_pred ChHHHHHHHHHHHHHh-----------------------hcCCeEEEEeCCHHHHHHHHHHc------C--CceEECCCC
Confidence 3468888888886531 37899999999999999888887 2 245899999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC-ChhhHHHHhHhhhhcCCcc-----eEEEEEEEe
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW-SPMKDLQAMDRAHRIGQKK-----VVNVYRLIT 192 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w-np~~~~Qa~gR~~RiGQ~~-----~V~Vy~lv~ 192 (292)
..+|.+++++|+.++.+.+|+++ ++|++|+|++.|++||++++++ ++..+.||+||+.|.+..+ +.++|.|++
T Consensus 527 ~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 527 QQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 99999999999866677777765 9999999999999999999986 9999999999999999764 379999999
Q ss_pred CCCHHHHHHHH
Q psy15261 193 KNTLEEKIMNL 203 (292)
Q Consensus 193 ~~TvEe~i~~~ 203 (292)
++|.|+....+
T Consensus 606 ~dT~E~~~s~~ 616 (732)
T TIGR00603 606 KDTQEMYYSTK 616 (732)
T ss_pred CCchHHHHHHH
Confidence 99999988543
No 22
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.69 E-value=6.3e-16 Score=146.57 Aligned_cols=149 Identities=26% Similarity=0.335 Sum_probs=124.0
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceE-EEEEC--
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTY-LRLDG-- 115 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~-~~i~G-- 115 (292)
.-|||..+.++|.+.. ....+.|++||++++++++.|.++|.+ .++.. .++-|
T Consensus 346 ~HPKl~~l~eilke~~---------------------~k~~~~RvIVFT~yRdTae~i~~~L~~---~~~~~~~rFiGQa 401 (542)
T COG1111 346 EHPKLEKLREILKEQL---------------------EKNGDSRVIVFTEYRDTAEEIVNFLKK---IGIKARVRFIGQA 401 (542)
T ss_pred CCccHHHHHHHHHHHH---------------------hcCCCceEEEEehhHhHHHHHHHHHHh---cCCcceeEEeecc
Confidence 5689999999998863 124568999999999999999999954 33333 35555
Q ss_pred ------CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 116 ------SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 116 ------~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
++++++..+++++|+ .+.+.||+ +|.+|-+|||++.++.||||||.-+|.+..||+||.+| ++.-.||.
T Consensus 402 ~r~~~~GMsQkeQ~eiI~~Fr-~Ge~nVLV-aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~v 476 (542)
T COG1111 402 SREGDKGMSQKEQKEIIDQFR-KGEYNVLV-ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVV 476 (542)
T ss_pred ccccccccCHHHHHHHHHHHh-cCCceEEE-EcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEE
Confidence 588999999999999 46667755 78999999999999999999999999999998888876 47788999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhc
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVIN 216 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~ 216 (292)
|+++||-|+.-|....+|..-....+.
T Consensus 477 Lvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 477 LVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred EEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888776555543
No 23
>KOG0331|consensus
Probab=99.69 E-value=2.4e-16 Score=151.86 Aligned_cols=126 Identities=24% Similarity=0.347 Sum_probs=110.1
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|...|.++|.+.. -..+.|+||||+.+..++.|+..| ...++++..|||.
T Consensus 320 ~~~~~K~~~l~~lL~~~~----------------------~~~~~KvIIFc~tkr~~~~l~~~l---~~~~~~a~~iHGd 374 (519)
T KOG0331|consen 320 CDETAKLRKLGKLLEDIS----------------------SDSEGKVIIFCETKRTCDELARNL---RRKGWPAVAIHGD 374 (519)
T ss_pred cCHHHHHHHHHHHHHHHh----------------------ccCCCcEEEEecchhhHHHHHHHH---HhcCcceeeeccc
Confidence 445678999999998873 146789999999999999999999 5567999999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
.++.+|+.+++.|.+ +++.| |++|+++++|||+.+.++||+||+|-|...|.||+||.+|.|++.....|.
T Consensus 375 ~sQ~eR~~~L~~Fre-G~~~v-LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 375 KSQSERDWVLKGFRE-GKSPV-LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred ccHHHHHHHHHhccc-CCcce-EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEE
Confidence 999999999999994 55555 557899999999999999999999999999999999999999887655553
No 24
>PTZ00110 helicase; Provisional
Probab=99.65 E-value=1.5e-15 Score=150.31 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=109.8
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|...|.++|..+. ..+.++||||+....++.|...| ...++.+..+||.
T Consensus 357 ~~~~~k~~~L~~ll~~~~-----------------------~~~~k~LIF~~t~~~a~~l~~~L---~~~g~~~~~ihg~ 410 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIM-----------------------RDGDKILIFVETKKGADFLTKEL---RLDGWPALCIHGD 410 (545)
T ss_pred EechhHHHHHHHHHHHhc-----------------------ccCCeEEEEecChHHHHHHHHHH---HHcCCcEEEEECC
Confidence 344568888999888762 36789999999999999999999 4568899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+++.+|..+++.|++ +.+.| |++|+++++|||+.++++||+||+|+++..|.||+||++|.|.+..+ |.|++.+
T Consensus 411 ~~~~eR~~il~~F~~-G~~~I-LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 411 KKQEERTWVLNEFKT-GKSPI-MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred CcHHHHHHHHHHHhc-CCCcE-EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 999999999999995 55555 55889999999999999999999999999999999999999987654 4456554
No 25
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.63 E-value=2.8e-16 Score=115.46 Aligned_cols=75 Identities=40% Similarity=0.664 Sum_probs=67.9
Q ss_pred CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcC
Q psy15261 104 EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIG 180 (292)
Q Consensus 104 ~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiG 180 (292)
...++.+..+||+++..+|..+++.|+... ..| |++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~-~~v-li~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGE-IRV-LIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTS-SSE-EEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccC-ceE-EEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 446899999999999999999999999644 455 556799999999999999999999999999999999999987
No 26
>KOG0298|consensus
Probab=99.62 E-value=5.8e-16 Score=158.67 Aligned_cols=141 Identities=30% Similarity=0.362 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
++|+.....++..+.. .....|+|+|+|+...+|.++..+ ...++.+....+ +
T Consensus 1202 g~kI~~v~~~il~iK~---------------------k~~qekvIvfsqws~~ldV~e~~~---~~N~I~~~~~~~-t-- 1254 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKF---------------------KNEQEKVIVFSQWSVVLDVKELRY---LMNLIKKQLDGE-T-- 1254 (1394)
T ss_pred ccCchhHHHHHHHHhc---------------------cCcCceEEEEEehHHHHHHHHHHH---HhhhhHhhhccC-C--
Confidence 5788888777666531 245689999999999999999999 556777655443 3
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHH
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~ 199 (292)
++-...+..|. ++.||++....++-|+||..|.||+.++|--||..+.||+||+||+||++++.||+++..+|+|+.
T Consensus 1255 ~d~~dc~~~fk---~I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~ 1331 (1394)
T KOG0298|consen 1255 EDFDDCIICFK---SIDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEEN 1331 (1394)
T ss_pred cchhhhhhhcc---cceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHH
Confidence 34557888888 389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy15261 200 IMNLQKFKLLT 210 (292)
Q Consensus 200 i~~~~~~K~~~ 210 (292)
|+.+...|...
T Consensus 1332 Il~l~~~~ee~ 1342 (1394)
T KOG0298|consen 1332 ILSLITSKEET 1342 (1394)
T ss_pred HHHHhhhhHHH
Confidence 99988877654
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.62 E-value=2.3e-15 Score=144.70 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=95.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
...++||||+....++.+...| ...++.+..+||.+++++|..+++.|+. +.++||+ +|+++++|+|++++++||
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L---~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLV-aTdv~~rGiDip~v~~VI 328 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHL---AADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILV-ATDVAARGLHIPAVTHVF 328 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHH---HhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEE-EechhhcCCCccccCEEE
Confidence 4679999999999999999999 4568999999999999999999999994 5666655 779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
+||+|+++..|.||+||++|.|+...+ +.|+.+
T Consensus 329 ~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 329 NYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred EeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999999999999999999999987554 344544
No 28
>KOG0328|consensus
Probab=99.62 E-value=2.4e-15 Score=133.48 Aligned_cols=123 Identities=24% Similarity=0.361 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHH
Q psy15261 42 KLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTA 121 (292)
Q Consensus 42 Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~ 121 (292)
|..+|+.|-..+ .-.+++|||+.+..+|+|.+.+ ...++.+..+||.+++++
T Consensus 253 KfdtLcdLYd~L-------------------------tItQavIFcnTk~kVdwLtekm---~~~nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 253 KFDTLCDLYDTL-------------------------TITQAVIFCNTKRKVDWLTEKM---REANFTVSSMHGDMEQKE 304 (400)
T ss_pred hHhHHHHHhhhh-------------------------ehheEEEEecccchhhHHHHHH---HhhCceeeeccCCcchhH
Confidence 778888777665 3467999999999999999999 556899999999999999
Q ss_pred HHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 122 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 122 R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
|+++++.|++ +..+| |++|++-++|++.+..+.||+||+|-|+..|++||||.+|+|.+.. +..|+..+.+
T Consensus 305 Rd~im~dFRs-g~Srv-LitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv--ainFVk~~d~ 375 (400)
T KOG0328|consen 305 RDKIMNDFRS-GKSRV-LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKSDDL 375 (400)
T ss_pred HHHHHHHhhc-CCceE-EEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce--EEEEecHHHH
Confidence 9999999996 34455 5588999999999999999999999999999999999999998753 3445554433
No 29
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1e-14 Score=143.39 Aligned_cols=132 Identities=25% Similarity=0.390 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
.|+..|..++... ...++||||..+..++.|...| ...|+.+..+||++++.
T Consensus 259 ~k~~~L~~ll~~~-------------------------~~~~~IVF~~tk~~~~~l~~~l---~~~g~~~~~lhG~l~q~ 310 (513)
T COG0513 259 EKLELLLKLLKDE-------------------------DEGRVIVFVRTKRLVEELAESL---RKRGFKVAALHGDLPQE 310 (513)
T ss_pred HHHHHHHHHHhcC-------------------------CCCeEEEEeCcHHHHHHHHHHH---HHCCCeEEEecCCCCHH
Confidence 4999999999774 3347999999999999999999 55689999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHH
Q psy15261 121 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200 (292)
Q Consensus 121 ~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i 200 (292)
+|.+.+++|+ ++.++||| +|+++++||++.+.++||+||+|.++..|.||+||++|.|.+. ..+.|++. .-|...
T Consensus 311 ~R~~~l~~F~-~g~~~vLV-aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~ 385 (513)
T COG0513 311 ERDRALEKFK-DGELRVLV-ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKK 385 (513)
T ss_pred HHHHHHHHHH-cCCCCEEE-EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHH
Confidence 9999999999 56677766 6799999999999999999999999999999999999999654 44555665 224444
Q ss_pred HHHHH
Q psy15261 201 MNLQK 205 (292)
Q Consensus 201 ~~~~~ 205 (292)
+....
T Consensus 386 l~~ie 390 (513)
T COG0513 386 LKRIE 390 (513)
T ss_pred HHHHH
Confidence 44333
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.58 E-value=1.3e-14 Score=139.92 Aligned_cols=105 Identities=23% Similarity=0.385 Sum_probs=94.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
...++||||+....++.+...| ...++.+..+||++++.+|..++++|+ .+.++||+ +|+++++|+|++++++||
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L---~~~~~~~~~l~g~~~~~~R~~~l~~f~-~G~~~vLV-aTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWL---RKAGINCCYLEGEMVQAKRNEAIKRLT-DGRVNVLV-ATDVAARGIDIDDVSHVI 318 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHH---HhCCCCEEEecCCCCHHHHHHHHHHHh-CCCCcEEE-EccccccCccCCCCCEEE
Confidence 4579999999999999999999 446899999999999999999999999 46666655 669999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+||+|+++..|.||+||++|.|....+.++
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 999999999999999999999987665554
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.58 E-value=2.1e-14 Score=140.03 Aligned_cols=120 Identities=23% Similarity=0.333 Sum_probs=103.5
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..+.|...|..++... ...|+||||+....++.+...| ...++.+..++|.+
T Consensus 318 ~~~~k~~~l~~ll~~~-------------------------~~~~~IVF~~s~~~~~~l~~~L---~~~~~~~~~~~g~~ 369 (475)
T PRK01297 318 AGSDKYKLLYNLVTQN-------------------------PWERVMVFANRKDEVRRIEERL---VKDGINAAQLSGDV 369 (475)
T ss_pred cchhHHHHHHHHHHhc-------------------------CCCeEEEEeCCHHHHHHHHHHH---HHcCCCEEEEECCC
Confidence 3456777888877652 4579999999999999999999 44588999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+..+|.++++.|++ +.+.+|+ +|+++++|+|+.++++||+|++|+++..|.|++||++|.|+...+.+
T Consensus 370 ~~~~R~~~~~~Fr~-G~~~vLv-aT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~ 437 (475)
T PRK01297 370 PQHKRIKTLEGFRE-GKIRVLV-ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSIS 437 (475)
T ss_pred CHHHHHHHHHHHhC-CCCcEEE-EccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEE
Confidence 99999999999994 5666655 67999999999999999999999999999999999999998754443
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.57 E-value=1.8e-14 Score=139.86 Aligned_cols=124 Identities=24% Similarity=0.473 Sum_probs=106.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|+.+|..+|... .+.++||||+....++.+...| ...++.+..+||+++
T Consensus 226 ~~~k~~~l~~ll~~~-------------------------~~~~~lVF~~t~~~~~~l~~~L---~~~~~~v~~~hg~~~ 277 (460)
T PRK11776 226 PDERLPALQRLLLHH-------------------------QPESCVVFCNTKKECQEVADAL---NAQGFSALALHGDLE 277 (460)
T ss_pred cHHHHHHHHHHHHhc-------------------------CCCceEEEECCHHHHHHHHHHH---HhCCCcEEEEeCCCC
Confidence 345888888888663 4578999999999999999999 455899999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+.+|+.+++.|+ .+.++||+ +|+++++|+|++++++||+||+|.++..|.||+||++|.|+... +|.|+..+
T Consensus 278 ~~eR~~~l~~F~-~g~~~vLV-aTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 278 QRDRDQVLVRFA-NRSCSVLV-ATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred HHHHHHHHHHHH-cCCCcEEE-EecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 999999999999 46666655 67999999999999999999999999999999999999997644 45556554
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.57 E-value=1.8e-14 Score=143.43 Aligned_cols=104 Identities=22% Similarity=0.399 Sum_probs=93.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.|.+.| ...++.+..+||.+++.+|..+++.|++ +.++||| +|+++++|||+.++++||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L---~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLV-aTdv~arGIDip~V~~VI 330 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTL---ERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILV-ATDVAARGLHIDGVKYVY 330 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHH---HHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EehhhhcCCCccCCCEEE
Confidence 5689999999999999999999 4458899999999999999999999994 5566655 779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+||.||++..|.|++||++|.|....+.+
T Consensus 331 nyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 331 NYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred EcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999999999999999999998765444
No 34
>KOG0330|consensus
Probab=99.57 E-value=2e-14 Score=132.43 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=99.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.|..++|||+...+.+.+.-.| ...|+.+..+||.+++..|...++.|++ +.+.| |++|+++++|||.+.+++||
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L---~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~i-Lv~TDVaSRGLDip~Vd~VV 373 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLL---RNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSI-LVCTDVASRGLDIPHVDVVV 373 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHH---HhcCcceecccchhhHHHHHHHHHHHhc-cCCcE-EEecchhcccCCCCCceEEE
Confidence 5689999999999999999998 5569999999999999999999999995 55555 55779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHH
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvE 197 (292)
+||.|-+...|++|.||+.|.| +.-.+..||+.-.+|
T Consensus 374 NyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 374 NYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred ecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 9999999999999999999999 556677788885554
No 35
>KOG0333|consensus
Probab=99.56 E-value=3.6e-14 Score=134.82 Aligned_cols=128 Identities=22% Similarity=0.279 Sum_probs=111.0
Q ss_pred ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEE
Q psy15261 35 SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114 (292)
Q Consensus 35 ~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~ 114 (292)
..+..+.|...|.++|... -..+++||.+.+..+++|.+.| ...|+.++++|
T Consensus 497 ~m~~ed~k~kkL~eil~~~-------------------------~~ppiIIFvN~kk~~d~lAk~L---eK~g~~~~tlH 548 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESN-------------------------FDPPIIIFVNTKKGADALAKIL---EKAGYKVTTLH 548 (673)
T ss_pred EEecchHHHHHHHHHHHhC-------------------------CCCCEEEEEechhhHHHHHHHH---hhccceEEEee
Confidence 4567788999999999874 3578999999999999999999 55689999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 115 GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 115 G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
|+-++++|+.++..|++ +...| |++|+++|+||++++.++||+||..-+...|.|||||.+|.|+..++.-| ++..
T Consensus 549 g~k~qeQRe~aL~~fr~-~t~dI-lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSf--lt~~ 624 (673)
T KOG0333|consen 549 GGKSQEQRENALADFRE-GTGDI-LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISF--LTPA 624 (673)
T ss_pred CCccHHHHHHHHHHHHh-cCCCE-EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEE--eccc
Confidence 99999999999999996 33345 55779999999999999999999999999999999999999988765543 4443
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.56 E-value=2.2e-14 Score=139.21 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=93.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
...++||||+....++.|...| ...++.+..+||.+++.+|.++++.|.+ +.++||| +|+++++|+|+.++++||
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L---~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQL---NKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVV 318 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHH---HHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEE
Confidence 4579999999999999999999 4458899999999999999999999994 5666655 779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+|++|.++..|.|++||++|.|.+..+.++
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l 348 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSL 348 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEE
Confidence 999999999999999999999987654443
No 37
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.55 E-value=4.6e-14 Score=139.10 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=104.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|...|.++|.... ....++|||++.+..++.+...|.. ..++.+..+||+++
T Consensus 349 ~~~k~~~l~~~l~~~~-----------------------~~~~~~iVFv~s~~~a~~l~~~L~~--~~g~~~~~~Hg~~~ 403 (518)
T PLN00206 349 TKQKKQKLFDILKSKQ-----------------------HFKPPAVVFVSSRLGADLLANAITV--VTGLKALSIHGEKS 403 (518)
T ss_pred chhHHHHHHHHHHhhc-----------------------ccCCCEEEEcCCchhHHHHHHHHhh--ccCcceEEeeCCCC
Confidence 3457777888886642 2345899999999999999998842 35789999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
..+|..+++.|.. +.++|| ++|+++++|+|++++++||+||+|.++..|.||+||++|.|....+ +.|+..+
T Consensus 404 ~~eR~~il~~Fr~-G~~~IL-VaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a--i~f~~~~ 475 (518)
T PLN00206 404 MKERREVMKSFLV-GEVPVI-VATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA--IVFVNEE 475 (518)
T ss_pred HHHHHHHHHHHHC-CCCCEE-EEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE--EEEEchh
Confidence 9999999999994 566665 5779999999999999999999999999999999999999976544 4455543
No 38
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.54 E-value=2.3e-14 Score=104.84 Aligned_cols=81 Identities=37% Similarity=0.567 Sum_probs=71.2
Q ss_pred HHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhH
Q psy15261 95 IVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMD 174 (292)
Q Consensus 95 ~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~g 174 (292)
.+...|. ..++.+..+||++++.+|..+++.|+... . .+|++|.++++|+|++.+++||+++++|++..+.|++|
T Consensus 2 ~l~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~g 76 (82)
T smart00490 2 ELAELLK---ELGIKVARLHGGLSQEEREEILEKFNNGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIG 76 (82)
T ss_pred HHHHHHH---HCCCeEEEEECCCCHHHHHHHHHHHHcCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhc
Confidence 3556663 34789999999999999999999999644 3 66778899999999999999999999999999999999
Q ss_pred hhhhcC
Q psy15261 175 RAHRIG 180 (292)
Q Consensus 175 R~~RiG 180 (292)
|++|.|
T Consensus 77 R~~R~g 82 (82)
T smart00490 77 RAGRAG 82 (82)
T ss_pred ccccCC
Confidence 999987
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=8.5e-14 Score=135.67 Aligned_cols=105 Identities=23% Similarity=0.288 Sum_probs=94.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.++++||||.....++.+...| ...|+.+..+||++++.+|..+++.|. .+.++||+ +|.+.++|+|++++++||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L---~~~g~~~~~~H~~l~~~eR~~i~~~F~-~g~~~vLV-aT~~~~~GID~p~V~~VI 299 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASL---QNLGIAAGAYHAGLEISARDDVHHKFQ-RDEIQVVV-ATVAFGMGINKPDVRFVI 299 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHH---HhcCCCeeEeeCCCCHHHHHHHHHHHH-cCCCcEEE-EechhhccCCcccceEEE
Confidence 5677899999999999999999 445899999999999999999999999 56677655 678999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++++|.++..|.|++||++|.|+...+.+|
T Consensus 300 ~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 300 HYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred EeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999988765554
No 40
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.48 E-value=3.2e-13 Score=135.66 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=103.0
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..+|..+|... ...++||||.....++.|...| ...++.+..+||.+++
T Consensus 230 ~~k~~~L~~~L~~~-------------------------~~~~~IVF~~tk~~a~~l~~~L---~~~g~~~~~lhgd~~q 281 (629)
T PRK11634 230 MRKNEALVRFLEAE-------------------------DFDAAIIFVRTKNATLEVAEAL---ERNGYNSAALNGDMNQ 281 (629)
T ss_pred hhHHHHHHHHHHhc-------------------------CCCCEEEEeccHHHHHHHHHHH---HhCCCCEEEeeCCCCH
Confidence 35888888888653 3568999999999999999999 4458899999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+|.+++++|.. +.++| |++|+++++|+|++.+++||+||+|.++..|.|++||++|.|....+.++
T Consensus 282 ~~R~~il~~Fr~-G~~~I-LVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 282 ALREQTLERLKD-GRLDI-LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred HHHHHHHHHHhC-CCCCE-EEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 999999999994 56665 55789999999999999999999999999999999999999987654443
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.48 E-value=4.3e-13 Score=134.54 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=92.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+.+..++.+...| ...++.+..+||++++.+|.++++.|.. +.++|| ++|.+.++|+|++++++||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L---~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VL-VaT~a~~~GIDip~V~~VI 309 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARL---QSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIV-VATVAFGMGINKPNVRFVV 309 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHH---HhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEE-EEechhhccCCCCCcCEEE
Confidence 5789999999999999999999 4568999999999999999999999984 556665 4778999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+|++|.+...|.|++||++|.|....+.+
T Consensus 310 ~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 310 HFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred EeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 99999999999999999999997755333
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.46 E-value=3.3e-13 Score=128.37 Aligned_cols=110 Identities=25% Similarity=0.406 Sum_probs=95.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
...++||||.....++.+...| ...++.+..+||+++..+|..+++.|++ +.++|| ++|++.++|+|++.+++||
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l---~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vL-vaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKM---HERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVL-ITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHH---HHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEE-EEcccccCCcCcccCCEEE
Confidence 3578999999999999999999 4458899999999999999999999994 566665 5779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
++++|.++..+.|++||++|.|.... ++.|+....
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~--~i~l~~~~~ 375 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGV--AINFVTPDD 375 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCce--EEEEEcHHH
Confidence 99999999999999999999986544 455665543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.45 E-value=7.5e-13 Score=132.52 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=92.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||.....++.+...| ...++++..+||+++.++|..+++.|.. +.++| |++|.+.|.|+|++++++||
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L---~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~v-lVaT~a~~~GID~p~v~~VI 297 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERL---ESQGISALAYHAGLSNKVRAENQEDFLY-DDVKV-MVATNAFGMGIDKPNVRFVI 297 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHH---HhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCcCCCCCEEE
Confidence 3678999999999999999999 4568999999999999999999999985 45655 55779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
++++|++...|.|++||++|.|+...+.+
T Consensus 298 ~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 298 HYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred EcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 99999999999999999999997765543
No 44
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.45 E-value=7.8e-13 Score=129.89 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=100.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.+++||+.....++.|...| ...++++..+||+++.++|..+++.|+. +...|||++++..++|+|+++.++|
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L---~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEML---KKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHH---HHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEE
Confidence 35788999999999999999999 4458899999999999999999999984 5567888788999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCCcc-eEEEEEEEeCCC
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQKK-VVNVYRLITKNT 195 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy~lv~~~T 195 (292)
|++.|+.+...+.|++||++|.+..+ .+.||.++-.-.
T Consensus 418 Il~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 418 IFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred EEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999999998765 699999986543
No 45
>KOG0332|consensus
Probab=99.45 E-value=9.4e-13 Score=120.93 Aligned_cols=116 Identities=25% Similarity=0.338 Sum_probs=99.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..+|.+|-.-+ .-...+|||+.+.++.+|...| ...|..+..+||.+.
T Consensus 314 ~~~K~~~l~~lyg~~-------------------------tigqsiIFc~tk~ta~~l~~~m---~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLL-------------------------TIGQSIIFCHTKATAMWLYEEM---RAEGHQVSLLHGDLT 365 (477)
T ss_pred hhhHHHHHHHHHhhh-------------------------hhhheEEEEeehhhHHHHHHHH---HhcCceeEEeeccch
Confidence 456999998854333 2346799999999999999999 567999999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC------ChhhHHHHhHhhhhcCCcce
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW------SPMKDLQAMDRAHRIGQKKV 184 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w------np~~~~Qa~gR~~RiGQ~~~ 184 (292)
..+|..++++|+. +...| |++|.+.++|++....+.||+||+|- .+..|.+||||.+|+|.+.-
T Consensus 366 ~~~R~~ii~~Fr~-g~~kV-LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~ 435 (477)
T KOG0332|consen 366 VEQRAAIIDRFRE-GKEKV-LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL 435 (477)
T ss_pred hHHHHHHHHHHhc-CcceE-EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce
Confidence 9999999999995 44455 55889999999999999999999985 57889999999999997654
No 46
>KOG0383|consensus
Probab=99.44 E-value=2.1e-14 Score=142.66 Aligned_cols=117 Identities=34% Similarity=0.513 Sum_probs=96.6
Q ss_pred CHHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQ 80 (292)
Q Consensus 1 al~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (292)
++|.|||+||||+++... .+..... .. ..-..+++|+|+..|..++..+. ..|
T Consensus 579 ~~mel~K~~~hpy~~~~~-e~~~~~~-~~--~~~~l~k~~~k~~~l~~~~~~l~-----------------------~~g 631 (696)
T KOG0383|consen 579 IVMELRKQCNHPYLSPLE-EPLEENG-EY--LGSALIKASGKLTLLLKMLKKLK-----------------------SSG 631 (696)
T ss_pred HHHHHHHhhcCcccCccc-cccccch-HH--HHHHHHHHHHHHHHHHHHHHHHH-----------------------hcc
Confidence 378999999999998762 2211111 11 11246889999999999999985 689
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEecccccccc
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLG 148 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLlst~~~~~G 148 (292)
|||+||+|+..++|+|+.++ ...+ .|.+++|..+...|+..+++||. +.+-.++|++|++||.|
T Consensus 632 hrvl~~~q~~~~ldlled~~---~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 632 HRVLIFSQMIHMLDLLEDYL---TYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhHHHHHHHHHHHHhHHHH---hccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999 6667 99999999999999999999995 45567999999999987
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.41 E-value=1.5e-12 Score=135.02 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=93.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
+.+.||||..+..++.+...| ...|+.+..+||++++.+|..+.++|.. +.++|| ++|.+.|+|||+++.++||+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L---~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VL-VATdAFGMGIDkPDVR~VIH 754 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERL---QEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINII-CATVAFGMGINKPDVRFVIH 754 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHH---HHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEE-EEechhhcCCCccCCcEEEE
Confidence 567899999999999999999 4468999999999999999999999995 556665 47799999999999999999
Q ss_pred eCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 160 VDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
|++|.++..|.|++||++|.|+...+..|+
T Consensus 755 ydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 755 HSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred cCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999999999999999999999986655553
No 48
>KOG0341|consensus
Probab=99.40 E-value=9.9e-13 Score=121.36 Aligned_cols=134 Identities=25% Similarity=0.369 Sum_probs=111.5
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
++.-.|+..|.+.|... .-+|||||.-+..+|.|..+| -..|+..+.|||+
T Consensus 404 VkqEaKiVylLeCLQKT--------------------------~PpVLIFaEkK~DVD~IhEYL---LlKGVEavaIHGG 454 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQKT--------------------------SPPVLIFAEKKADVDDIHEYL---LLKGVEAVAIHGG 454 (610)
T ss_pred HHhhhhhhhHHHHhccC--------------------------CCceEEEeccccChHHHHHHH---HHccceeEEeecC
Confidence 34456777777766553 468999999999999999999 6779999999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
..+++|...++.|+.+ .-+| |+.|++++.||++++..|||+||.|-....|.+||||.+|-|.+.-.+ .|+.+++-
T Consensus 455 KDQedR~~ai~afr~g-kKDV-LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~ 530 (610)
T KOG0341|consen 455 KDQEDRHYAIEAFRAG-KKDV-LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQE 530 (610)
T ss_pred cchhHHHHHHHHHhcC-CCce-EEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccch
Confidence 9999999999999964 3355 557899999999999999999999999999999999999999775433 35777776
Q ss_pred HHHHHHH
Q psy15261 197 EEKIMNL 203 (292)
Q Consensus 197 Ee~i~~~ 203 (292)
+.-++.+
T Consensus 531 esvLlDL 537 (610)
T KOG0341|consen 531 ESVLLDL 537 (610)
T ss_pred HHHHHHH
Confidence 6665543
No 49
>KOG0336|consensus
Probab=99.40 E-value=1.2e-12 Score=121.50 Aligned_cols=118 Identities=19% Similarity=0.347 Sum_probs=105.9
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..+.|+..+..++..++ +..|++||+..+.++|-|...| ...|+..-.+||.-
T Consensus 447 ~d~~k~~~~~~f~~~ms------------------------~ndKvIiFv~~K~~AD~LSSd~---~l~gi~~q~lHG~r 499 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANMS------------------------SNDKVIIFVSRKVMADHLSSDF---CLKGISSQSLHGNR 499 (629)
T ss_pred ccHHHHHHHHHHHHhcC------------------------CCceEEEEEechhhhhhccchh---hhcccchhhccCCh
Confidence 34668888888888763 7899999999999999999988 77899999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcce
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~ 184 (292)
.+.+|+..++.|++ +.+++| ++|+.+++||++++..||++||.|-|...|.+|+||++|.|.+.+
T Consensus 500 ~Q~DrE~al~~~ks-G~vrIL-vaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 500 EQSDREMALEDFKS-GEVRIL-VATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhhHHHHHHhhhc-CceEEE-EEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99999999999994 666665 578999999999999999999999999999999999999998764
No 50
>KOG0335|consensus
Probab=99.39 E-value=2.2e-12 Score=123.03 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=109.1
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|...|.++|...... +... ....++++||+..+..++.++.+| ...++++..|||.
T Consensus 310 V~~~~kr~~Lldll~~~~~~--~~~~--------------~~~~e~tlvFvEt~~~~d~l~~~l---~~~~~~~~sIhg~ 370 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGP--PSDG--------------EPKWEKTLVFVETKRGADELAAFL---SSNGYPAKSIHGD 370 (482)
T ss_pred ecchhhHHHHHHHhhcccCC--cccC--------------CcccceEEEEeeccchhhHHHHHH---hcCCCCceeecch
Confidence 44567888888888654211 1111 124569999999999999999999 7789999999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.++.+|.+.++.|. .+++.+++ +|.++++|||..+..|||+||.|-+...|.+||||.+|.|+....+.+
T Consensus 371 ~tq~er~~al~~Fr-~g~~pvlV-aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 371 RTQIEREQALNDFR-NGKAPVLV-ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred hhhhHHHHHHHHhh-cCCcceEE-EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 99999999999999 46667655 779999999999999999999999999999999999999998665554
No 51
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.35 E-value=2.6e-11 Score=113.81 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
.|...+.+++..+ ..+.++||||+....++.+...|.+. .+...+..+||.+++.
T Consensus 207 ~~~~~l~~l~~~~------------------------~~~~~~lVf~~t~~~~~~~~~~L~~~-~~~~~~~~~h~~~~~~ 261 (358)
T TIGR01587 207 GEISSLERLLEFI------------------------KKGGKIAIIVNTVDRAQEFYQQLKEN-APEEEIMLLHSRFTEK 261 (358)
T ss_pred cCHHHHHHHHHHh------------------------hCCCeEEEEECCHHHHHHHHHHHHhh-cCCCeEEEEECCCCHH
Confidence 5677777777654 36789999999999999999999542 2334689999999999
Q ss_pred HHHHH----HHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc----eEEEEEEEe
Q psy15261 121 ARHAI----VTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK----VVNVYRLIT 192 (292)
Q Consensus 121 ~R~~~----v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~----~V~Vy~lv~ 192 (292)
+|.+. ++.|.. +...+ |++|+++++|+|+ .++.||.+..| +..+.||+||++|.|.+. .|.||....
T Consensus 262 ~r~~~~~~~~~~f~~-~~~~i-lvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 262 DRAKKEAELLEEMKK-NEKFV-IVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHHHHHHhcC-CCCeE-EEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 99764 888985 45555 5578999999999 48888888765 788999999999999763 455555444
Q ss_pred CC
Q psy15261 193 KN 194 (292)
Q Consensus 193 ~~ 194 (292)
.+
T Consensus 337 ~~ 338 (358)
T TIGR01587 337 EG 338 (358)
T ss_pred CC
Confidence 33
No 52
>KOG0345|consensus
Probab=99.33 E-value=6.4e-12 Score=118.40 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=106.6
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
++..-|+..|..+|... ..+|++||......+++....|... ..++.++.+||.
T Consensus 237 ~~a~eK~~~lv~~L~~~-------------------------~~kK~iVFF~TCasVeYf~~~~~~~-l~~~~i~~iHGK 290 (567)
T KOG0345|consen 237 CEADEKLSQLVHLLNNN-------------------------KDKKCIVFFPTCASVEYFGKLFSRL-LKKREIFSIHGK 290 (567)
T ss_pred ecHHHHHHHHHHHHhcc-------------------------ccccEEEEecCcchHHHHHHHHHHH-hCCCcEEEecch
Confidence 34455889999999773 5789999999999999988888653 468899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++.+.|.+++..|.... +-+|++|+++++|||+++.+.||.||||-+|..+.||.||..|.|....-.|+
T Consensus 291 ~~q~~R~k~~~~F~~~~--~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 291 MSQKARAKVLEAFRKLS--NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred hcchhHHHHHHHHHhcc--CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 99999999999999633 33466889999999999999999999999999999999999999988765554
No 53
>KOG0326|consensus
Probab=99.33 E-value=1.3e-12 Score=118.01 Aligned_cols=119 Identities=16% Similarity=0.304 Sum_probs=106.7
Q ss_pred ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEE
Q psy15261 35 SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114 (292)
Q Consensus 35 ~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~ 114 (292)
+-++.+-|+.-|..|+..+. -.+.+|||++...++.|+... ..-|+++..+|
T Consensus 302 afV~e~qKvhCLntLfskLq-------------------------INQsIIFCNS~~rVELLAkKI---TelGyscyyiH 353 (459)
T KOG0326|consen 302 AFVEERQKVHCLNTLFSKLQ-------------------------INQSIIFCNSTNRVELLAKKI---TELGYSCYYIH 353 (459)
T ss_pred eeechhhhhhhHHHHHHHhc-------------------------ccceEEEeccchHhHHHHHHH---HhccchhhHHH
Confidence 45778899999999999873 457899999999999999988 44599999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 115 GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 115 G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
..+.++.|.++...|. .+.|+.|++ ++..-+|++.+..|.||+||.|-|+..|.+|+||.+|+|--.
T Consensus 354 akM~Q~hRNrVFHdFr-~G~crnLVc-tDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 354 AKMAQEHRNRVFHDFR-NGKCRNLVC-TDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred HHHHHhhhhhhhhhhh-ccccceeee-hhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 9999999999999999 578888775 599999999999999999999999999999999999999653
No 54
>KOG0342|consensus
Probab=99.32 E-value=7.4e-12 Score=118.48 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
.++..|..+|.+. ....|++|||....+.......| +.-.+++..|||..++.
T Consensus 315 ~~f~ll~~~LKk~------------------------~~~~KiiVF~sT~~~vk~~~~lL---~~~dlpv~eiHgk~~Q~ 367 (543)
T KOG0342|consen 315 SRFSLLYTFLKKN------------------------IKRYKIIVFFSTCMSVKFHAELL---NYIDLPVLEIHGKQKQN 367 (543)
T ss_pred chHHHHHHHHHHh------------------------cCCceEEEEechhhHHHHHHHHH---hhcCCchhhhhcCCccc
Confidence 4567788888774 23499999999999999999999 56789999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 121 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 121 ~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
.|..+..+|....+ .+|++|+++++|+|++..+.||-|++|-+|..|+||+||.+|-|-+.
T Consensus 368 kRT~~~~~F~kaes--gIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 368 KRTSTFFEFCKAES--GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred ccchHHHHHhhccc--ceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc
Confidence 99999999996543 46778899999999999999999999999999999999999987664
No 55
>KOG0344|consensus
Probab=99.31 E-value=1.7e-11 Score=118.25 Aligned_cols=122 Identities=23% Similarity=0.308 Sum_probs=104.5
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
+.-+|+.++++++..- -.-.+|||.|+.+....|...|. ..+++.+.++||..
T Consensus 370 se~~K~lA~rq~v~~g-------------------------~~PP~lIfVQs~eRak~L~~~L~--~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 370 SEKGKLLALRQLVASG-------------------------FKPPVLIFVQSKERAKQLFEELE--IYDNINVDVIHGER 422 (593)
T ss_pred cchhHHHHHHHHHhcc-------------------------CCCCeEEEEecHHHHHHHHHHhh--hccCcceeeEeccc
Confidence 3457899999998763 23468999999999888888884 35789999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc-eEEEE
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK-VVNVY 188 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy 188 (292)
++.+|...+++|+ .+.+.||+ +|++.++|+++.+++.||+||.|-.-..|.+|+||++|.|+.. .+..|
T Consensus 423 ~~~qrde~~~~FR-~g~IwvLi-cTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 423 SQKQRDETMERFR-IGKIWVLI-CTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred chhHHHHHHHHHh-ccCeeEEE-ehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 9999999999999 57788866 6699999999999999999999999999999999999999873 34433
No 56
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.31 E-value=1.1e-11 Score=126.72 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccC-----CCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCE-----MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 153 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~-----~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~ 153 (292)
.+.++||||+.+..++.+...|.... ..+..+..+||++++++|.++.++|. ++.+++ |++|+++++|||+.+
T Consensus 270 ~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~-~G~i~v-LVaTd~lerGIDI~~ 347 (742)
T TIGR03817 270 EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR-DGELLG-VATTNALELGVDISG 347 (742)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH-cCCceE-EEECchHhccCCccc
Confidence 46799999999999999998874310 11467789999999999999999999 466666 458899999999999
Q ss_pred CCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHH
Q psy15261 154 ADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMN 202 (292)
Q Consensus 154 a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~ 202 (292)
.++||+++.|-+...+.||+||++|.|+... ++.+...+..|.....
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 9999999999999999999999999997654 3444555666665444
No 57
>KOG0354|consensus
Probab=99.29 E-value=6.1e-11 Score=118.32 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=117.0
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC--
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG-- 115 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G-- 115 (292)
...||++.|.++|.+..- -.+..|++||+.++..++.|..+|.+...++++...+-|
T Consensus 392 ~~npkle~l~~~l~e~f~---------------------~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFE---------------------QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred ccChhHHHHHHHHHHHhh---------------------cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 578999999999998741 146789999999999999999999755566777766666
Q ss_pred ------CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 116 ------SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 116 ------~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
++++++..++++.|++ +.+.||+ +|.+|-+|||...|+-||.||..-||..+.||+|| +|- +.-.++-
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~-G~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa---~ns~~vl 524 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRD-GEINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA---RNSKCVL 524 (746)
T ss_pred ccccccccCHHHHHHHHHHHhC-CCccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc---cCCeEEE
Confidence 5778889999999995 7777755 77999999999999999999999999999999999 654 4444554
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhc
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVIN 216 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~ 216 (292)
|.+ +.-+......+..|+.+....+.
T Consensus 525 l~t-~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 525 LTT-GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred EEc-chhHHHHHHHHHhHHHHHHHHHH
Confidence 445 54444444455555555554443
No 58
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=2.6e-11 Score=123.35 Aligned_cols=121 Identities=18% Similarity=0.152 Sum_probs=101.5
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
....|..+|.+++..+. ..+.++||||.+....+.+...| ...|+++..+||.+
T Consensus 409 ~~~~K~~al~~~i~~~~-----------------------~~~~pvLIf~~t~~~se~l~~~L---~~~gi~~~~L~~~~ 462 (790)
T PRK09200 409 TLDEKYKAVIEEVKERH-----------------------ETGRPVLIGTGSIEQSETFSKLL---DEAGIPHNLLNAKN 462 (790)
T ss_pred CHHHHHHHHHHHHHHHH-----------------------hcCCCEEEEeCcHHHHHHHHHHH---HHCCCCEEEecCCc
Confidence 34569999999997753 46899999999999999999999 44589999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCC---CCCC-----EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNL---TGAD-----TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL---~~a~-----~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
...++..+...+.. + . ++++|+.+|+|+|+ .++. |||++|.|-++..|.|+.||++|.|.......|
T Consensus 463 ~~~e~~~i~~ag~~-g--~-VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~ 537 (790)
T PRK09200 463 AAKEAQIIAEAGQK-G--A-VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF 537 (790)
T ss_pred cHHHHHHHHHcCCC-C--e-EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE
Confidence 88887777766663 2 3 45688999999999 4676 999999999999999999999999988655443
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=3.5e-11 Score=120.16 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=101.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..+|.+++..+. ..+.++||||.+....+.+...| ...|+++..+||..+
T Consensus 455 ~~~K~~aL~~~i~~~~-----------------------~~~~pvLIft~t~~~se~L~~~L---~~~gi~~~~Lhg~~~ 508 (656)
T PRK12898 455 AAAKWAAVAARVRELH-----------------------AQGRPVLVGTRSVAASERLSALL---REAGLPHQVLNAKQD 508 (656)
T ss_pred HHHHHHHHHHHHHHHH-----------------------hcCCCEEEEeCcHHHHHHHHHHH---HHCCCCEEEeeCCcH
Confidence 3458999999998863 35678999999999999999999 456899999999864
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC---CCC-----EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEE
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---GAD-----TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRL 190 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~---~a~-----~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~l 190 (292)
+|++.+..|....+ . ++++|+.+|+|+|+. .+. +||++|.|-++..|.|++||++|.|....+..|
T Consensus 509 --~rE~~ii~~ag~~g-~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~-- 582 (656)
T PRK12898 509 --AEEAAIVARAGQRG-R-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI-- 582 (656)
T ss_pred --HHHHHHHHHcCCCC-c-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--
Confidence 55555666653222 3 566889999999997 444 999999999999999999999999987655433
Q ss_pred EeCCCHHHHHHHH
Q psy15261 191 ITKNTLEEKIMNL 203 (292)
Q Consensus 191 v~~~TvEe~i~~~ 203 (292)
+ |.|+.++..
T Consensus 583 i---s~eD~l~~~ 592 (656)
T PRK12898 583 L---SLEDDLLQS 592 (656)
T ss_pred e---chhHHHHHh
Confidence 2 445666544
No 60
>KOG0343|consensus
Probab=99.26 E-value=6.2e-11 Score=113.69 Aligned_cols=140 Identities=20% Similarity=0.296 Sum_probs=116.7
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+.-..|+..|...|.. ....|.|||..+...+..+...+.+ -.||++...+||.
T Consensus 295 v~l~~Ki~~L~sFI~s-------------------------hlk~K~iVF~SscKqvkf~~e~F~r-lrpg~~l~~L~G~ 348 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKS-------------------------HLKKKSIVFLSSCKQVKFLYEAFCR-LRPGIPLLALHGT 348 (758)
T ss_pred EehhhHHHHHHHHHHh-------------------------ccccceEEEEehhhHHHHHHHHHHh-cCCCCceeeeccc
Confidence 4455699999998876 3678999999999999999998866 5799999999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
+++..|..+..+|.... .++|++|+++++||+++..+.||-+|.|-+-..|++|.||..|++......+| +++ +-
T Consensus 349 ~~Q~~R~ev~~~F~~~~--~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p-sE 423 (758)
T KOG0343|consen 349 MSQKKRIEVYKKFVRKR--AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM--LTP-SE 423 (758)
T ss_pred hhHHHHHHHHHHHHHhc--ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-hh
Confidence 99999999999998533 56788999999999999999999999999999999999999999988776665 333 33
Q ss_pred HHHHHHHHHHH
Q psy15261 197 EEKIMNLQKFK 207 (292)
Q Consensus 197 Ee~i~~~~~~K 207 (292)
+|.+...++.|
T Consensus 424 eE~~l~~Lq~k 434 (758)
T KOG0343|consen 424 EEAMLKKLQKK 434 (758)
T ss_pred HHHHHHHHHHc
Confidence 45555444443
No 61
>KOG0348|consensus
Probab=99.25 E-value=1e-10 Score=111.87 Aligned_cols=115 Identities=20% Similarity=0.348 Sum_probs=91.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccC-------------------CCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCE-------------------MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~-------------------~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlL 139 (292)
...|+|||....+.++.=...|.... ..+.+++++||++++++|....+.|..... .+|
T Consensus 424 ~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~--~VL 501 (708)
T KOG0348|consen 424 EKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRR--AVL 501 (708)
T ss_pred hhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccc--eEE
Confidence 45699999998888765544442111 115679999999999999999999996543 356
Q ss_pred ecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHH
Q psy15261 140 LTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197 (292)
Q Consensus 140 lst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvE 197 (292)
++|+++++||||+....||-||+|..+..|.+|+||.-|+|.+..-..| +.+.-.|
T Consensus 502 LcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf--L~P~Eae 557 (708)
T KOG0348|consen 502 LCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF--LLPSEAE 557 (708)
T ss_pred EehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE--ecccHHH
Confidence 6889999999999999999999999999999999999999998665443 4444444
No 62
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.22 E-value=1.4e-10 Score=120.81 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=91.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCC---CCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA 154 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~---~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a 154 (292)
..++++||||+.+..++.+...|..... .+..+..+||++++.+|..+.++|++ +.+++++ +|.+.++|+|+...
T Consensus 282 ~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLV-aTs~Le~GIDip~V 359 (876)
T PRK13767 282 KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVV-SSTSLELGIDIGYI 359 (876)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChHHhcCCCCCC
Confidence 3567899999999999999988854211 24678899999999999999999994 5666655 77899999999999
Q ss_pred CEEEEeCCCCChhhHHHHhHhhhhcC-CcceEEEEE
Q psy15261 155 DTVIFVDHDWSPMKDLQAMDRAHRIG-QKKVVNVYR 189 (292)
Q Consensus 155 ~~vI~~d~~wnp~~~~Qa~gR~~RiG-Q~~~V~Vy~ 189 (292)
++||+++.|.+...+.||+||++|-+ ......++-
T Consensus 360 d~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 360 DLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999864 444555554
No 63
>KOG0340|consensus
Probab=99.21 E-value=8.3e-11 Score=107.67 Aligned_cols=121 Identities=21% Similarity=0.296 Sum_probs=104.4
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|-..|..+|++.. ......++||+|.......|...| ..-.+.+..+|+.
T Consensus 233 ~~~~vkdaYLv~~Lr~~~----------------------~~~~~simIFvnttr~cQ~l~~~l---~~le~r~~~lHs~ 287 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFE----------------------NKENGSIMIFVNTTRECQLLSMTL---KNLEVRVVSLHSQ 287 (442)
T ss_pred cchhhhHHHHHHHHhhhh----------------------hccCceEEEEeehhHHHHHHHHHH---hhhceeeeehhhc
Confidence 344567788888998863 124678999999999999999999 5568999999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcce
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~ 184 (292)
+++++|-..+.+|++ ...++ |+.|+++++||+++..+-||++|.|-.|..|++|.||..|.|....
T Consensus 288 m~Q~eR~~aLsrFrs-~~~~i-liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 288 MPQKERLAALSRFRS-NAARI-LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred chHHHHHHHHHHHhh-cCccE-EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999996 34555 5577999999999999999999999999999999999999998754
No 64
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.21 E-value=8.7e-11 Score=118.22 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=101.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..++.+.+.++. ..|++|||||.+....+.+...| ...|+++..++|. .
T Consensus 388 ~~k~~ai~~~i~~~~-----------------------~~grpvLV~t~si~~se~ls~~L---~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 388 EEKWKAVVDEIKERH-----------------------AKGQPVLVGTTSVEKSELLSNLL---KERGIPHNVLNAK--N 439 (745)
T ss_pred HHHHHHHHHHHHHHH-----------------------hcCCCEEEEeCcHHHHHHHHHHH---HHcCCCeEEeeCC--h
Confidence 358888888887763 57999999999999999999999 5568999999998 6
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCC-------CCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG-------ADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~-------a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+|+..+..|.. ....| +++|+.+|+|+|+.. .-|||.+++|-++..+.|+.||++|.|.......|
T Consensus 440 ~~rEa~ii~~ag-~~g~V-tIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 440 HEREAEIIAQAG-RKGAV-TIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred HHHHHHHHHhcC-CCceE-EEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 789999999984 33444 557899999999977 66999999999999999999999999998665544
No 65
>KOG0327|consensus
Probab=99.21 E-value=7e-11 Score=109.04 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
.+|+..|..+..+. ...+|||+...-++.+...| ...++....+||.+.+
T Consensus 250 ~~k~~~l~dl~~~~---------------------------~q~~if~nt~r~v~~l~~~L---~~~~~~~s~~~~d~~q 299 (397)
T KOG0327|consen 250 EEKLDTLCDLYRRV---------------------------TQAVIFCNTRRKVDNLTDKL---RAHGFTVSAIHGDMEQ 299 (397)
T ss_pred cccccHHHHHHHhh---------------------------hcceEEecchhhHHHHHHHH---hhCCceEEEeecccch
Confidence 34888888888753 56899999999999999999 6679999999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcce
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~ 184 (292)
.+|..++..|+. ++.+| |++++..++|++++.++-||+||.|-+...|.+|+||.+|.|.+..
T Consensus 300 ~~R~~~~~ef~~-gssrv-lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~ 362 (397)
T KOG0327|consen 300 NERDTLMREFRS-GSSRV-LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV 362 (397)
T ss_pred hhhhHHHHHhhc-CCceE-EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce
Confidence 999999999995 45566 4588999999999999999999999999999999999999997753
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.19 E-value=1.1e-10 Score=118.00 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=99.7
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
....|..++.+.+.++. ..+.++||||.+....+.+...| ...|+++..++|..
T Consensus 405 ~~~~K~~ai~~~i~~~~-----------------------~~~~pvLIft~s~~~se~ls~~L---~~~gi~~~~L~a~~ 458 (762)
T TIGR03714 405 TLPEKLMATLEDVKEYH-----------------------ETGQPVLLITGSVEMSEIYSELL---LREGIPHNLLNAQN 458 (762)
T ss_pred CHHHHHHHHHHHHHHHh-----------------------hCCCCEEEEECcHHHHHHHHHHH---HHCCCCEEEecCCC
Confidence 34569999999998863 57899999999999999999999 45689999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCC---------CCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---------GADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~---------~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
...+|..+..+|+. + . ++++|+.+|+|+|+. +.++|+.+++|-+... .|+.||++|.|....+..|
T Consensus 459 ~~~E~~ii~~ag~~-g--~-VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 459 AAKEAQIIAEAGQK-G--A-VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred hHHHHHHHHHcCCC-C--e-EEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 88887766666653 2 3 467899999999998 8899999999977655 9999999999988664444
No 67
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.18 E-value=3.5e-10 Score=114.05 Aligned_cols=118 Identities=21% Similarity=0.217 Sum_probs=96.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.++||||.....++.|...| ...|+++..+||.++..+|.+++..|.. +.+.|+ +++...++|++++.++.|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L---~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VL-V~t~~L~rGfDiP~v~lV 514 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYL---KELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVL-VGINLLREGLDLPEVSLV 514 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHH---hhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEE-EEcChhcCCeeeCCCcEE
Confidence 57899999999999999999999 4458899999999999999999999984 566665 467899999999999999
Q ss_pred EEeC-----CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC--HHHHHHHH
Q psy15261 158 IFVD-----HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT--LEEKIMNL 203 (292)
Q Consensus 158 I~~d-----~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T--vEe~i~~~ 203 (292)
|++| .+-+...+.|++||++|.. ... ++.++...| +...|.+.
T Consensus 515 vi~DadifG~p~~~~~~iqriGRagR~~-~G~--vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 515 AILDADKEGFLRSERSLIQTIGRAARNV-NGK--VIMYADKITDSMQKAIEET 564 (655)
T ss_pred EEeCcccccCCCCHHHHHHHhcCCCCCC-CCE--EEEEEcCCCHHHHHHHHHH
Confidence 9999 4557889999999999973 333 444454443 55555554
No 68
>KOG4284|consensus
Probab=99.18 E-value=6.1e-11 Score=115.47 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHH
Q psy15261 42 KLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTA 121 (292)
Q Consensus 42 Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~ 121 (292)
|++.|.+++..+ +-.++||||.....++-+..+| ...|+.+..|.|.|++++
T Consensus 259 klq~L~~vf~~i-------------------------py~QAlVF~~~~sra~~~a~~L---~ssG~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 259 KLQKLTHVFKSI-------------------------PYVQALVFCDQISRAEPIATHL---KSSGLDVTFISGAMSQKD 310 (980)
T ss_pred HHHHHHHHHhhC-------------------------chHHHHhhhhhhhhhhHHHHHh---hccCCCeEEeccccchhH
Confidence 899999999886 5678999999999999999999 778999999999999999
Q ss_pred HHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcce
Q psy15261 122 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184 (292)
Q Consensus 122 R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~ 184 (292)
|.-+++.++. -.++| |++|+..++|++-..+|.||++|+|-+...|.+||||++|+|...-
T Consensus 311 Rl~a~~~lr~-f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 311 RLLAVDQLRA-FRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred HHHHHHHhhh-ceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 9999999883 44555 5588999999999999999999999999999999999999998754
No 69
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.16 E-value=5.9e-10 Score=112.73 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=100.8
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
.+++..|.+-|..+ ...+.+++|||.....++.|...| ...|+++..+||.++.
T Consensus 429 ~~q~~~L~~~L~~~-----------------------~~~g~~viIf~~t~~~ae~L~~~L---~~~gi~~~~~h~~~~~ 482 (652)
T PRK05298 429 KGQVDDLLSEIRKR-----------------------VAKGERVLVTTLTKRMAEDLTDYL---KELGIKVRYLHSDIDT 482 (652)
T ss_pred cccHHHHHHHHHHH-----------------------HhCCCEEEEEeCCHHHHHHHHHHH---hhcceeEEEEECCCCH
Confidence 45677777777665 257899999999999999999999 5568999999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC-----CCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH-----DWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~-----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
.+|..++..|.. +.+.|+ +++...++|++++.++.||++|. +-++..+.|++||++|. ... .++.|+..
T Consensus 483 ~~R~~~l~~f~~-g~i~vl-V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G--~~i~~~~~ 556 (652)
T PRK05298 483 LERVEIIRDLRL-GEFDVL-VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNG--KVILYADK 556 (652)
T ss_pred HHHHHHHHHHHc-CCceEE-EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCC--EEEEEecC
Confidence 999999999984 556554 57799999999999999999997 45888999999999994 333 34445553
No 70
>KOG0338|consensus
Probab=99.16 E-value=8.4e-11 Score=111.91 Aligned_cols=114 Identities=26% Similarity=0.405 Sum_probs=98.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
..+++||++.+..++.+.-.| +..|+.+.-+||++++.+|-+.++.|+ +..|.||| +|+++++||++.+..+||+
T Consensus 426 ~~~~ivFv~tKk~AHRl~Ill---GLlgl~agElHGsLtQ~QRlesL~kFk-~~eidvLi-aTDvAsRGLDI~gV~tVIN 500 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILL---GLLGLKAGELHGSLTQEQRLESLEKFK-KEEIDVLI-ATDVASRGLDIEGVQTVIN 500 (691)
T ss_pred ccceEEEEehHHHHHHHHHHH---HHhhchhhhhcccccHHHHHHHHHHHH-hccCCEEE-EechhhccCCccceeEEEe
Confidence 579999999999999999888 788999999999999999999999999 56777765 7799999999999999999
Q ss_pred eCCCCChhhHHHHhHhhhhcCCc-ceEEEEEEEeCCCHHHHHHHH
Q psy15261 160 VDHDWSPMKDLQAMDRAHRIGQK-KVVNVYRLITKNTLEEKIMNL 203 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~~~TvEe~i~~~ 203 (292)
|+.|-....|.||+||.-|.|.. +.|. |+.++ |.+|++-
T Consensus 501 y~mP~t~e~Y~HRVGRTARAGRaGrsVt---lvgE~--dRkllK~ 540 (691)
T KOG0338|consen 501 YAMPKTIEHYLHRVGRTARAGRAGRSVT---LVGES--DRKLLKE 540 (691)
T ss_pred ccCchhHHHHHHHhhhhhhcccCcceEE---Eeccc--cHHHHHH
Confidence 99999999999999999999976 3343 44444 5555543
No 71
>KOG0350|consensus
Probab=99.15 E-value=1.4e-10 Score=110.13 Aligned_cols=111 Identities=21% Similarity=0.254 Sum_probs=95.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHh-ccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLF-KCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~-~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
...++|+|+...+....+...|. .....++.+..++|..+.+.|.+.+.+|+. +.+++|++| +++++|+++.+.+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhhcCCcccccceE
Confidence 57899999999999888888874 335567788889999999999999999995 667787755 999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
|+||+|-.-..|.+|+||..|.||.. ++|.++..
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999999999875 34445543
No 72
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=2.1e-10 Score=116.38 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=99.9
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..+|.+.+.++. ..+.++||||.+....+.|...| ...++++..++|....
T Consensus 423 ~~K~~al~~~i~~~~-----------------------~~g~pvLI~t~si~~se~ls~~L---~~~gi~~~~Lna~~~~ 476 (796)
T PRK12906 423 DSKFNAVVKEIKERH-----------------------AKGQPVLVGTVAIESSERLSHLL---DEAGIPHAVLNAKNHA 476 (796)
T ss_pred HHHHHHHHHHHHHHH-----------------------hCCCCEEEEeCcHHHHHHHHHHH---HHCCCCeeEecCCcHH
Confidence 458899999998874 57899999999999999999999 4568999999999876
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCC---CCC-----EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---GAD-----TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~---~a~-----~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.++.-+...+.. + . ++++|..+|+|+++. .+. |||.++.|-+...+.|+.||++|.|.......|
T Consensus 477 ~Ea~ii~~ag~~-g--~-VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 477 KEAEIIMNAGQR-G--A-VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred HHHHHHHhcCCC-c--e-EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 666666666653 2 2 566889999999984 567 999999999999999999999999998765444
No 73
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.15 E-value=5.7e-10 Score=108.07 Aligned_cols=138 Identities=24% Similarity=0.320 Sum_probs=116.0
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|+..+..++... ..+.+++||++.......+...+ ..+++ +..++|.++
T Consensus 266 ~~~~~~~~~~~~~~~------------------------~~~~~~lif~~~~~~a~~i~~~~---~~~~~-~~~it~~t~ 317 (442)
T COG1061 266 SERKIAAVRGLLLKH------------------------ARGDKTLIFASDVEHAYEIAKLF---LAPGI-VEAITGETP 317 (442)
T ss_pred cHHHHHHHHHHHHHh------------------------cCCCcEEEEeccHHHHHHHHHHh---cCCCc-eEEEECCCC
Confidence 345777777777653 15789999999999999999999 66677 889999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhc-CCcce--EEEEEEEeCCC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRI-GQKKV--VNVYRLITKNT 195 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~Ri-GQ~~~--V~Vy~lv~~~T 195 (292)
..+|+.++++|+..+ +.+ |++.+++.+|+|+++++.+|+..+.-++..+.|++||+.|. ..++. +..|-++...+
T Consensus 318 ~~eR~~il~~fr~g~-~~~-lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~ 395 (442)
T COG1061 318 KEEREAILERFRTGG-IKV-LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDL 395 (442)
T ss_pred HHHHHHHHHHHHcCC-CCE-EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcc
Confidence 999999999999645 554 55779999999999999999999999999999999999994 44443 88888888899
Q ss_pred HHHHHHHHHHH
Q psy15261 196 LEEKIMNLQKF 206 (292)
Q Consensus 196 vEe~i~~~~~~ 206 (292)
.+..+......
T Consensus 396 ~~~~~~~~~~~ 406 (442)
T COG1061 396 GEEDIARRRRL 406 (442)
T ss_pred cccchhhhhhh
Confidence 88888766554
No 74
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.13 E-value=6.1e-10 Score=118.25 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=91.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.+++|||+....++.+.+.|.+ ..++.++..+||.+++.+|.+++.+|.+ +.++||+ +|++.++|+|++++++||
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~-~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VI 884 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAE-LVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTII 884 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHH-hCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEE
Confidence 567999999999999999988854 3467899999999999999999999994 6677755 668999999999999999
Q ss_pred EeCCC-CChhhHHHHhHhhhhcCCcceEEEEEEEe
Q psy15261 159 FVDHD-WSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192 (292)
Q Consensus 159 ~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 192 (292)
+.+.+ |....+.|+.||++|.|.+. ++|-+..
T Consensus 885 i~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~ 917 (1147)
T PRK10689 885 IERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTP 917 (1147)
T ss_pred EecCCCCCHHHHHHHhhccCCCCCce--EEEEEeC
Confidence 87765 67788999999999998764 4444443
No 75
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.12 E-value=3.2e-10 Score=118.04 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=93.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.+++|||+....++.+...|.+ ..+++++..+||.+++.+|.+++.+|.. +.++||| +|.+.++|+|++++++|
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~-~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILV-aT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRE-LVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLV-CTTIIETGIDIPNANTI 734 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHH-hCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcccccccCCEE
Confidence 4678999999999999999998854 3468899999999999999999999994 5666655 77899999999999999
Q ss_pred EEeCCC-CChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 158 IFVDHD-WSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 158 I~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
|+++.+ +....+.|+.||++|.|++. ++|-++..
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 999886 45668899999999998654 44555544
No 76
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.10 E-value=5.6e-10 Score=114.06 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=82.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHH-----HHHHHhcC----CC-----CeeEEEecccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARH-----AIVTKFNS----DP-----TIDVLLLTTQV 144 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~-----~~v~~F~~----~~-----~~~vlLlst~~ 144 (292)
.+.++||||+.+..++.+...|.+ .++ ..+||.+++.+|. .++++|.. .. .-..+|++|++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~---~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdV 345 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPK---EKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSA 345 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh---cCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccch
Confidence 568999999999999999999943 344 8999999999999 78999975 11 11356789999
Q ss_pred cccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 145 GGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 145 ~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+++|||+.. ++||+...|+ ..|.||+||++|.|......+
T Consensus 346 aerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i 385 (844)
T TIGR02621 346 GEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQI 385 (844)
T ss_pred hhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceE
Confidence 999999975 8999877664 789999999999998644333
No 77
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=7.2e-10 Score=113.73 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=99.6
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..+|.+.+.++. ..+.+|||||++....+.|.+.| ...++++..+|+ ..
T Consensus 581 ~eK~~Ali~~I~~~~-----------------------~~grpVLIft~Sve~sE~Ls~~L---~~~gI~h~vLna--kq 632 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-----------------------KKGQPVLVGTASVEVSETLSRML---RAKRIAHNVLNA--KQ 632 (1025)
T ss_pred HHHHHHHHHHHHHHh-----------------------hCCCCEEEEeCcHHHHHHHHHHH---HHcCCCceeecC--CH
Confidence 359999999998874 57899999999999999999999 556899999997 56
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCC--------EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD--------TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~--------~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+|+..+..|.. .... ++++|+.+|+|+++.-.. +||..+.+-+...+.|+.||++|.|.......|
T Consensus 633 ~~REa~Iia~AG-~~g~-VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff 707 (1025)
T PRK12900 633 HDREAEIVAEAG-QKGA-VTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY 707 (1025)
T ss_pred HHhHHHHHHhcC-CCCe-EEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE
Confidence 899999999984 3334 466889999999997332 458889999999999999999999998765444
No 78
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.09 E-value=1.3e-09 Score=110.94 Aligned_cols=107 Identities=18% Similarity=0.282 Sum_probs=84.6
Q ss_pred CCCCeEEEEeccHH--------HHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccccc
Q psy15261 78 LTQHRALIFCQLRA--------MLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL 149 (292)
Q Consensus 78 ~~~~KvlIFsq~~~--------~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl 149 (292)
..+++++|||.... .+..+.+.|.+ ..+++++..+||++++.+|.+++++|.+ +.++|| ++|.+.++|+
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~-~~~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~IL-VaT~vie~Gi 545 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQE-AFPELRVGLLHGRMKPAEKDAVMAAFKA-GEIDIL-VATTVIEVGV 545 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHH-HCCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEE-EECcceeeCc
Confidence 57899999997532 23444555533 2346889999999999999999999995 556665 5778999999
Q ss_pred CCCCCCEEEEeCCCC-ChhhHHHHhHhhhhcCCcceEEE
Q psy15261 150 NLTGADTVIFVDHDW-SPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 150 nL~~a~~vI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
|+++++.||+++.+. ....+.|+.||++|.|.+..|.+
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEE
Confidence 999999999999985 56788899999999987654443
No 79
>KOG0339|consensus
Probab=99.08 E-value=5e-10 Score=106.68 Aligned_cols=126 Identities=25% Similarity=0.374 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
.|+.+|..-|.+. ....+||||+.-....+.|...| ...++.+..+||++.+.
T Consensus 453 ~Kl~wl~~~L~~f------------------------~S~gkvlifVTKk~~~e~i~a~L---klk~~~v~llhgdkdqa 505 (731)
T KOG0339|consen 453 KKLNWLLRHLVEF------------------------SSEGKVLIFVTKKADAEEIAANL---KLKGFNVSLLHGDKDQA 505 (731)
T ss_pred HHHHHHHHHhhhh------------------------ccCCcEEEEEeccCCHHHHHHHh---ccccceeeeecCchhhH
Confidence 4888888888775 35679999999999999999999 88899999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHH
Q psy15261 121 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197 (292)
Q Consensus 121 ~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvE 197 (292)
+|.+.+..|+. ..+.|+ +.|+++++|+++....+||+||..-....+.|||||.+|-|-+ -..|.||++...+
T Consensus 506 ~rn~~ls~fKk-k~~~Vl-vatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 506 ERNEVLSKFKK-KRKPVL-VATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HHHHHHHHHhh-cCCceE-EEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 99999999995 344554 4779999999999999999999999999999999999999987 5567788876544
No 80
>KOG0347|consensus
Probab=99.07 E-value=2e-10 Score=110.24 Aligned_cols=133 Identities=22% Similarity=0.267 Sum_probs=111.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
-+.|.||||+..+.+..|.-+| +.-+++.+.+|..+.+++|-+.+++|...+ ..+|++|+++++||++++..|||
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L---~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLL---NNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred cCCceEEEechHHHHHHHHHHH---hhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEeehhhhccCCCCCcceEE
Confidence 3789999999999999999999 666899999999999999999999999744 45677889999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEe--------------------CCCHHHHHHHHHHHHHHHHHHHhcC
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT--------------------KNTLEEKIMNLQKFKLLTANTVINS 217 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~--------------------~~TvEe~i~~~~~~K~~~~~~vv~~ 217 (292)
+|..|-....|.+|-||.-|.+... |.|..+-. --.+++.|+...+.+.+++..+..-
T Consensus 537 HYqVPrtseiYVHRSGRTARA~~~G-vsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~ 614 (731)
T KOG0347|consen 537 HYQVPRTSEIYVHRSGRTARANSEG-VSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKL 614 (731)
T ss_pred EeecCCccceeEecccccccccCCC-eEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988543 22221110 0236888888888888888877654
No 81
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.06 E-value=3.1e-09 Score=107.28 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=85.6
Q ss_pred CCCCeEEEEeccH--------HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccccc
Q psy15261 78 LTQHRALIFCQLR--------AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL 149 (292)
Q Consensus 78 ~~~~KvlIFsq~~--------~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl 149 (292)
..+++++|||... ..+..+.+.|.. ..+++.+..+||++++.+|..++++|.+ +.++||+ +|.+.++|+
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~-~~~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~Gv 522 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKK-AFPKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILV-ATTVIEVGV 522 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHh-hCCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECceeecCc
Confidence 4688999999764 234445555533 2368899999999999999999999994 5566655 678999999
Q ss_pred CCCCCCEEEEeCCCC-ChhhHHHHhHhhhhcCCcceEEE
Q psy15261 150 NLTGADTVIFVDHDW-SPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 150 nL~~a~~vI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
|+++++.||+++.+. +...+.|+.||++|.|.+..+.+
T Consensus 523 DiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 523 DVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred ccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 999999999999984 67788899999999997655543
No 82
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.6e-09 Score=106.78 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=94.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+...+|||.++..++.+.+.| ...|+....+||+++..+|+.+-++|.. +.+.| +++|.+.|.|||-++...||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L---~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~i-iVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWL---RKNGISAGAYHAGLSNEERERVQQAFLN-DEIKV-MVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHH---HHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEeccccCccCCCCceEEE
Confidence 4566899999999999999999 4459999999999999999999999995 44455 55779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
+|++|-+...|.|-+||++|.|....+.. |+..+.
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~ail--l~~~~D 338 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAIL--LYSPED 338 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEE--eecccc
Confidence 99999999999999999999997765444 344433
No 83
>KOG0334|consensus
Probab=99.01 E-value=1.6e-09 Score=110.56 Aligned_cols=124 Identities=23% Similarity=0.258 Sum_probs=108.6
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|+..|.+||.+.. ...++||||+...-++.+.+.|. ..|+.+..+||..+
T Consensus 596 e~eKf~kL~eLl~e~~------------------------e~~~tiiFv~~qe~~d~l~~~L~---~ag~~~~slHGgv~ 648 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERY------------------------EDGKTIIFVDKQEKADALLRDLQ---KAGYNCDSLHGGVD 648 (997)
T ss_pred chHHHHHHHHHHHHHh------------------------hcCCEEEEEcCchHHHHHHHHHH---hcCcchhhhcCCCc
Confidence 4679999999998873 57899999999999999999994 45899999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
..+|...++.|++ +. ..||+.|+++++||+...-..||+||.|-....|.+|.||.+|.|.+. ..|.|+..
T Consensus 649 q~dR~sti~dfK~-~~-~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 649 QHDRSSTIEDFKN-GV-VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hHHHHhHHHHHhc-cC-ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999995 33 456667899999999999999999999988899999999999999887 55556665
No 84
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.99 E-value=2.6e-09 Score=110.15 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=90.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
+.++|||++....++.+...|.+....++.++.+||++++++|.++++.|.. +..+ +|++|+++.+||++.++++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rk-VlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRK-VVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeE-EEEecchHhhcccccCceEEEE
Confidence 4689999999999999999885422257899999999999999999999984 4444 4668999999999999999999
Q ss_pred eCCC----CChhh--------------HHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 160 VDHD----WSPMK--------------DLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 160 ~d~~----wnp~~--------------~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
++.+ +||.. +.||.||++|. ++-.+|+|+++.
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 9876 45543 67888888776 567789998764
No 85
>KOG0349|consensus
Probab=98.95 E-value=2.4e-09 Score=100.41 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=89.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.-.|+||||..+...|-|++++.+.....+.++.+||...+.+|.+.+++|.. ..++ +|+.|+++++||++++..++|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvk-flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVK-FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeE-EEEEehhhhccccccCCceEE
Confidence 45799999999999999999998877778999999999999999999999995 3444 566789999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcC
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIG 180 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiG 180 (292)
++.+|-....|.+||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999888754
No 86
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.95 E-value=4e-09 Score=106.49 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=88.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++|||+.....++.+.+.|.+. .+++.+..+||++++. ++.+++|...+..+ +|++|+++++||++.++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~-~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~k-ILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKR-LPIYDFYIIHGKVPNI--DEILEKVYSSKNPS-IIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhh-cCCceEEeccCCcCHH--HHHHHHHhccCcee-EEeccChhhccccccCeeEEE
Confidence 3568999999999999999999542 2478999999999864 56677874344544 566999999999999999999
Q ss_pred EeC---CC---------CChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHH
Q psy15261 159 FVD---HD---------WSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197 (292)
Q Consensus 159 ~~d---~~---------wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvE 197 (292)
.++ .| .+...+.||.||++|. ++-.+|+|+++....
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 997 22 2566788988888887 468889999887653
No 87
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.94 E-value=4.1e-09 Score=113.46 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=83.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCC------------------------------CCceEEEEECCCCHHHHHHHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEM------------------------------PGVTYLRLDGSVVSTARHAIVTK 128 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~------------------------------~~~~~~~i~G~~~~~~R~~~v~~ 128 (292)
.+.++||||+.+..++.+...|.+... ..+.+...||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 568899999999999999988854210 01225678899999999999999
Q ss_pred hcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhc
Q psy15261 129 FNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRI 179 (292)
Q Consensus 129 F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~Ri 179 (292)
|++ +.++++ ++|.+...|||+...++||+++.|.+...+.||+||++|.
T Consensus 323 fK~-G~LrvL-VATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS-GELRCV-VATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh-CCceEE-EeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 994 566665 5779999999999999999999999999999999999985
No 88
>PRK02362 ski2-like helicase; Provisional
Probab=98.94 E-value=9.3e-09 Score=105.62 Aligned_cols=113 Identities=18% Similarity=0.121 Sum_probs=87.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCC---------------------------------CCceEEEEECCCCHHHHHH
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEM---------------------------------PGVTYLRLDGSVVSTARHA 124 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~---------------------------------~~~~~~~i~G~~~~~~R~~ 124 (292)
..++++||||+.+..+..+...|..... -...+...||++++.+|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 3578999999999887777766643210 0135778899999999999
Q ss_pred HHHHhcCCCCeeEEEecccccccccCCCCCCEEEE----eC-----CCCChhhHHHHhHhhhhcCCcceEEEEEEEe
Q psy15261 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VD-----HDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192 (292)
Q Consensus 125 ~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d-----~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 192 (292)
+.+.|++ +.++||+ +|.+.+.|+|++..+.||. || .|.++..+.|++||++|.|....-.++-+..
T Consensus 321 ve~~Fr~-G~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 321 VEDAFRD-RLIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred HHHHHHc-CCCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 9999994 6677655 7799999999998887776 66 4678889999999999999875555554443
No 89
>KOG1123|consensus
Probab=98.91 E-value=1.7e-08 Score=96.36 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=106.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.-.|+.+..-|+.-- ...|.|+|||+...-.+....-.| +.+ .|.|.++
T Consensus 525 NP~KFraCqfLI~~H-----------------------E~RgDKiIVFsDnvfALk~YAikl------~Kp--fIYG~Ts 573 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFH-----------------------ERRGDKIIVFSDNVFALKEYAIKL------GKP--FIYGPTS 573 (776)
T ss_pred CcchhHHHHHHHHHH-----------------------HhcCCeEEEEeccHHHHHHHHHHc------CCc--eEECCCc
Confidence 345777776666553 257999999999887777777666 333 4789999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC-ChhhHHHHhHhhhhcCCc----ceEEEEEEEeC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW-SPMKDLQAMDRAHRIGQK----KVVNVYRLITK 193 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w-np~~~~Qa~gR~~RiGQ~----~~V~Vy~lv~~ 193 (292)
+.+|.+++++|+.++.+..+++| ++|-..++|+.|+.+|-+..+. +...+.||.||+-|.-.. -+++.|.||+.
T Consensus 574 q~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~ 652 (776)
T KOG1123|consen 574 QNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSK 652 (776)
T ss_pred hhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeec
Confidence 99999999999999999888877 9999999999999999997775 677789999999998644 25899999999
Q ss_pred CCHHHHH
Q psy15261 194 NTLEEKI 200 (292)
Q Consensus 194 ~TvEe~i 200 (292)
+|.|-.-
T Consensus 653 DTqEM~Y 659 (776)
T KOG1123|consen 653 DTQEMYY 659 (776)
T ss_pred chHHHHh
Confidence 9988544
No 90
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.91 E-value=4.1e-09 Score=96.69 Aligned_cols=178 Identities=18% Similarity=0.173 Sum_probs=100.2
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
+..|+.+|+||+|..+.-.|..-. .....-+....|+|+..|.+||..+- ... .-..+.
T Consensus 60 ~~nl~~V~~HP~LlvdH~mPk~ll---~~e~~~~~~~tS~KF~~L~~Li~~li-~~~-----------------~~~~~~ 118 (297)
T PF11496_consen 60 IENLRLVANHPSLLVDHYMPKQLL---LSEPAEWLAYTSGKFQFLNDLIDSLI-DRD-----------------RREYPL 118 (297)
T ss_dssp HHHHHHHHH-GGGT--TT--S-S----STTHHHHHHHT-HHHHHHHHHHHHH-----------------------TTSSE
T ss_pred HHHHHHhccCccccccccCccccc---cchHHHHHHHcCchHHHHHHHHHHHH-hhh-----------------cccCCc
Confidence 457899999999976554331110 11112245678999999999998871 000 014578
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHH------------HHhc--CCCCeeEEEeccccccc
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIV------------TKFN--SDPTIDVLLLTTQVGGL 147 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v------------~~F~--~~~~~~vlLlst~~~~~ 147 (292)
+++|.++...++|+|+.+| ...++.+.++.|..-..+....- .... ...++.+.|++++-...
T Consensus 119 ~ilIv~~~~k~ldllE~~l---lGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 119 HILIVSRSGKELDLLEGLL---LGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp EEEEEE-STHHHHHHHHHH---TTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred eEEEEecCccHHHHHHHHH---ccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 9999999999999999999 55799999999965443332221 0111 12356677777664433
Q ss_pred ----ccCCCCCCEEEEeCCCCChhhHH-HHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHH
Q psy15261 148 ----GLNLTGADTVIFVDHDWSPMKDL-QAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQK 205 (292)
Q Consensus 148 ----GlnL~~a~~vI~~d~~wnp~~~~-Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~ 205 (292)
.++-...+.||.||+.+++.... |.+...+|-+ +.+-|++|+..+|+|..+.....
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEEEETTSHHHHHHHHTT
T ss_pred cCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHHHHHccC
Confidence 12234568999999999987654 5554454544 78999999999999999886654
No 91
>KOG0346|consensus
Probab=98.88 E-value=5e-09 Score=98.43 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=101.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.-.|+..+.-||.-- --..|.|||.+..+..-.|.-+| ...|++.+.++|.+|
T Consensus 251 e~DKflllyallKL~------------------------LI~gKsliFVNtIdr~YrLkLfL---eqFGiksciLNseLP 303 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLR------------------------LIRGKSLIFVNTIDRCYRLKLFL---EQFGIKSCILNSELP 303 (569)
T ss_pred cchhHHHHHHHHHHH------------------------HhcCceEEEEechhhhHHHHHHH---HHhCcHhhhhccccc
Confidence 446888888887542 13578999999999999999888 556999999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEeccc--------------------------c---------cccccCCCCCCEEEEeCCC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQ--------------------------V---------GGLGLNLTGADTVIFVDHD 163 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~--------------------------~---------~~~GlnL~~a~~vI~~d~~ 163 (292)
...|--++++||. +..+++|.+ + . .++||+++..+.|++||.|
T Consensus 304 ~NSR~Hii~QFNk-G~YdivIAt-D~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P 381 (569)
T KOG0346|consen 304 ANSRCHIIEQFNK-GLYDIVIAT-DDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP 381 (569)
T ss_pred ccchhhHHHHhhC-cceeEEEEc-cCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCC
Confidence 9999999999994 555565544 4 1 2489999999999999999
Q ss_pred CChhhHHHHhHhhhhcCCcceEEEEEE
Q psy15261 164 WSPMKDLQAMDRAHRIGQKKVVNVYRL 190 (292)
Q Consensus 164 wnp~~~~Qa~gR~~RiGQ~~~V~Vy~l 190 (292)
-++..|++|+||..|-|.+..+.-|..
T Consensus 382 ~t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 382 ETVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred CchHHHHHhccccccCCCCCceEEEec
Confidence 999999999999999998877665543
No 92
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.87 E-value=9.6e-09 Score=106.03 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=89.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
+..+|||+.....++.+...|......++.+..+||+++..+|.+++..|.. +.. -+|++|+++.+||++.++++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~r-kVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRR-KVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCe-EEEEecchHHhcccccCceEEEE
Confidence 5789999999999999999995422257889999999999999999999974 444 45668899999999999999999
Q ss_pred eCCC----CCh--------------hhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 160 VDHD----WSP--------------MKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 160 ~d~~----wnp--------------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
++.+ ++| ..+.||.||++|. .+-.+|+|+++..
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 7765 332 2467877777776 4788999998654
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=1.4e-08 Score=103.95 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=104.8
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..++.+-+.++. ..|+.|||||.+....+.|...| ...|+++..++|...
T Consensus 426 ~~~k~~av~~~i~~~~-----------------------~~g~PVLVgt~Sie~sE~ls~~L---~~~gi~h~vLnak~~ 479 (896)
T PRK13104 426 QADKFQAIIEDVRECG-----------------------VRKQPVLVGTVSIEASEFLSQLL---KKENIKHQVLNAKFH 479 (896)
T ss_pred HHHHHHHHHHHHHHHH-----------------------hCCCCEEEEeCcHHHHHHHHHHH---HHcCCCeEeecCCCC
Confidence 3458888988888874 68999999999999999999999 556999999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC--------------------------------------CCCEEEEe
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------------------------------------GADTVIFV 160 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~--------------------------------------~a~~vI~~ 160 (292)
..+|+.+.+.|+.+ . ++++|+.+|+|+|+. +.=|||--
T Consensus 480 q~Ea~iia~Ag~~G-~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT 555 (896)
T PRK13104 480 EKEAQIIAEAGRPG-A---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGS 555 (896)
T ss_pred hHHHHHHHhCCCCC-c---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEee
Confidence 99999999999953 2 566889999999974 34589999
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+.+-|...+.|.-||++|.|.......|
T Consensus 556 erhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 556 ERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred ccCchHHHHHHhccccccCCCCCceEEE
Confidence 9999999999999999999998776666
No 94
>PRK01172 ski2-like helicase; Provisional
Probab=98.81 E-value=5.5e-08 Score=99.04 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCC--C--------------------CceEEEEECCCCHHHHHHHHHHhcCCCCe
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEM--P--------------------GVTYLRLDGSVVSTARHAIVTKFNSDPTI 135 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~--~--------------------~~~~~~i~G~~~~~~R~~~v~~F~~~~~~ 135 (292)
..++++|||++.+...+.+...|..... . ...+..+||++++.+|..+.+.|+ ++.+
T Consensus 234 ~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~-~g~i 312 (674)
T PRK01172 234 NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR-NRYI 312 (674)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH-cCCC
Confidence 4578999999999988888777743210 0 123667899999999999999999 4566
Q ss_pred eEEEecccccccccCCCCCCEEEEeCC---------CCChhhHHHHhHhhhhcCCcce
Q psy15261 136 DVLLLTTQVGGLGLNLTGADTVIFVDH---------DWSPMKDLQAMDRAHRIGQKKV 184 (292)
Q Consensus 136 ~vlLlst~~~~~GlnL~~a~~vI~~d~---------~wnp~~~~Qa~gR~~RiGQ~~~ 184 (292)
+|| ++|.+.+.|+|+++ .+||+.+. ++++..+.|++||++|.|....
T Consensus 313 ~VL-vaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 313 KVI-VATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred eEE-EecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 664 47799999999985 57777654 3567788999999999997654
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=2.9e-08 Score=101.38 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=101.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..+|.+.+.++. ..+.+|||||.+....+.|...| ...|+++..+||.
T Consensus 412 ~~~K~~aI~~~I~~~~-----------------------~~grpVLIft~Si~~se~Ls~~L---~~~gi~~~vLnak-- 463 (830)
T PRK12904 412 EKEKFDAVVEDIKERH-----------------------KKGQPVLVGTVSIEKSELLSKLL---KKAGIPHNVLNAK-- 463 (830)
T ss_pred HHHHHHHHHHHHHHHH-----------------------hcCCCEEEEeCcHHHHHHHHHHH---HHCCCceEeccCc--
Confidence 3459999999998874 57899999999999999999999 5568999999996
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC--------------------------------------CCCEEEEe
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------------------------------------GADTVIFV 160 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~--------------------------------------~a~~vI~~ 160 (292)
..+|+..+..|.. ....| +++|+.+|+|+|+. +.=|||.-
T Consensus 464 q~eREa~Iia~Ag-~~g~V-tIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigT 541 (830)
T PRK12904 464 NHEREAEIIAQAG-RPGAV-TIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGT 541 (830)
T ss_pred hHHHHHHHHHhcC-CCceE-EEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEec
Confidence 6789999999984 33344 55889999999863 35589999
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+.+-|...+.|.-||++|.|.......|
T Consensus 542 erhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 542 ERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred ccCchHHHHHHhhcccccCCCCCceeEE
Confidence 9999999999999999999998776666
No 96
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.79 E-value=2.7e-08 Score=105.89 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=89.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+..+|||+.....++.+...|.+...+++.+..+||+++..+|.+++..+ +. +-+|++|+++.+||++.+..+||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEE
Confidence 346899999999999999999966555567899999999999998885443 22 44677899999999999999999
Q ss_pred EeCCC-----------------C-ChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 159 FVDHD-----------------W-SPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 159 ~~d~~-----------------w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
.++.. | +...+.||.||++|.| +-.+|+|+++...
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 98732 1 3457889999999987 6678999986544
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=2.7e-08 Score=101.79 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=103.8
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..++.+-+.++. ..|++|||||.+....+.+...| ...++++.++++..+
T Consensus 431 ~~~K~~Aii~ei~~~~-----------------------~~GrpVLV~t~sv~~se~ls~~L---~~~gi~~~vLnak~~ 484 (908)
T PRK13107 431 ADEKYQAIIKDIKDCR-----------------------ERGQPVLVGTVSIEQSELLARLM---VKEKIPHEVLNAKFH 484 (908)
T ss_pred HHHHHHHHHHHHHHHH-----------------------HcCCCEEEEeCcHHHHHHHHHHH---HHCCCCeEeccCccc
Confidence 3568888888888874 68999999999999999999999 556999999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC-------------------------------------CCCEEEEeC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT-------------------------------------GADTVIFVD 161 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~-------------------------------------~a~~vI~~d 161 (292)
..+|..+.+.|+. +. ++++|..+|+|+|+. +.=|||--+
T Consensus 485 ~~Ea~ii~~Ag~~-G~---VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTe 560 (908)
T PRK13107 485 EREAEIVAQAGRT-GA---VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTE 560 (908)
T ss_pred HHHHHHHHhCCCC-Cc---EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecc
Confidence 9999999999995 33 566889999999974 345899999
Q ss_pred CCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 162 HDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 162 ~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+-|...+.|.-||++|.|.......|
T Consensus 561 rheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 561 RHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred cCchHHHHhhhhcccccCCCCCceeEE
Confidence 999999999999999999998765555
No 98
>PRK00254 ski2-like helicase; Provisional
Probab=98.70 E-value=8.6e-08 Score=98.30 Aligned_cols=115 Identities=21% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhcc-----CC-------------------------CCceEEEEECCCCHHHHHHHHH
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKC-----EM-------------------------PGVTYLRLDGSVVSTARHAIVT 127 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~-----~~-------------------------~~~~~~~i~G~~~~~~R~~~v~ 127 (292)
..+.++||||+.+.....+...|... .. -...+...||++++.+|..+.+
T Consensus 236 ~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 236 KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHH
Confidence 35789999999988766555444210 00 0224788999999999999999
Q ss_pred HhcCCCCeeEEEecccccccccCCCCCCEEEE-------eCCCC-ChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 128 KFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF-------VDHDW-SPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 128 ~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~-------~d~~w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
.|+ .+.++||+ +|.+.+.|+|++..+.||. +..++ ....+.|++||++|.|..+.-.++-+....
T Consensus 316 ~F~-~G~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 316 AFR-EGLIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHH-CCCCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 999 46677655 7799999999998777773 22222 334779999999999876555555555443
No 99
>KOG0953|consensus
Probab=98.66 E-value=1.5e-07 Score=90.86 Aligned_cols=152 Identities=21% Similarity=0.267 Sum_probs=103.7
Q ss_pred hhcCCCcCcCCCChhhHHHhhcCCCCCc--ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEE
Q psy15261 7 SVCNHPKLVLGPSHAQYEALVSRPGLNL--SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRAL 84 (292)
Q Consensus 7 k~c~hP~lv~~~~~~~~~~~~~~~~~~~--~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kvl 84 (292)
++|..|..+ +..+++....+..+ +.++.-++|.....++..+. .+.+|.-+|
T Consensus 309 HLCGepsvl-----dlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~---------------------nlk~GDCvV 362 (700)
T KOG0953|consen 309 HLCGEPSVL-----DLVRKILKMTGDDVEVREYERLSPLVVEETALGSLS---------------------NLKPGDCVV 362 (700)
T ss_pred hccCCchHH-----HHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhc---------------------cCCCCCeEE
Confidence 567777654 35566666555444 45666666766665554442 357899999
Q ss_pred EEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCCCCEEEEeCCC
Q psy15261 85 IFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTGADTVIFVDHD 163 (292)
Q Consensus 85 IFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~a~~vI~~d~~ 163 (292)
-|+.. .+-.+...+.++ .+..+++|.|+.|++.|.+....||+..+ ++|| +++++-|.|||| +.++|||+++.
T Consensus 363 ~FSkk--~I~~~k~kIE~~--g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvl-VAsDAIGMGLNL-~IrRiiF~sl~ 436 (700)
T KOG0953|consen 363 AFSKK--DIFTVKKKIEKA--GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVL-VASDAIGMGLNL-NIRRIIFYSLI 436 (700)
T ss_pred Eeehh--hHHHHHHHHHHh--cCcceEEEecCCCCchhHHHHHHhCCCCCccceE-Eeeccccccccc-ceeEEEEeecc
Confidence 99853 333344444322 24459999999999999999999997444 5555 467999999998 47889999875
Q ss_pred ---------CChhhHHHHhHhhhhcCCc-ceEEEEEE
Q psy15261 164 ---------WSPMKDLQAMDRAHRIGQK-KVVNVYRL 190 (292)
Q Consensus 164 ---------wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~l 190 (292)
-.-....|-.||+||.|.+ ..-.|..|
T Consensus 437 Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 437 KYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred cCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 2334556999999999977 33444333
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.62 E-value=2.4e-07 Score=98.50 Aligned_cols=109 Identities=17% Similarity=0.325 Sum_probs=87.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHhcc------CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKC------EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 153 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~------~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~ 153 (292)
+.|+||||.....++.+.+.|... ...+..+..++|+++ ++.+++++|.+ +....++++.+..++|+|.+.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCccc
Confidence 479999999999888877776331 112235667999985 57789999986 444466778899999999999
Q ss_pred CCEEEEeCCCCChhhHHHHhHhhhhcCC---cceEEEEEEE
Q psy15261 154 ADTVIFVDHDWSPMKDLQAMDRAHRIGQ---KKVVNVYRLI 191 (292)
Q Consensus 154 a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ---~~~V~Vy~lv 191 (292)
+.+||++.++-++..+.|++||+.|.-- +....||.++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5667777664
No 101
>KOG0337|consensus
Probab=98.62 E-value=5.4e-08 Score=91.20 Aligned_cols=127 Identities=22% Similarity=0.243 Sum_probs=107.1
Q ss_pred cccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC
Q psy15261 36 DIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115 (292)
Q Consensus 36 ~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G 115 (292)
.++...|..+|..++.+.. ..++.+||+.....++++...| ...|+.+..+.|
T Consensus 241 ~~~~a~K~aaLl~il~~~~------------------------~~~~t~vf~~tk~hve~~~~ll---~~~g~~~s~iys 293 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRI------------------------KDKQTIVFVATKHHVEYVRGLL---RDFGGEGSDIYS 293 (529)
T ss_pred eeccHHHHHHHHHHHhccc------------------------cccceeEEecccchHHHHHHHH---HhcCCCcccccc
Confidence 4556678888888887763 3678999999999999999999 556899999999
Q ss_pred CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 116 SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 116 ~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
++.+..|...+.+|+. .... +++.|+++++|++.+.-+.||+||.|-.+..+.+|.||+.|-|.+ ..-|-+|+.
T Consensus 294 slD~~aRk~~~~~F~~-~k~~-~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~ 367 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRG-RKTS-ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAS 367 (529)
T ss_pred ccChHhhhhccccccC-Cccc-eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEec
Confidence 9999999999999994 3433 456779999999999999999999999999999999999999965 345555554
No 102
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.61 E-value=8.5e-08 Score=92.98 Aligned_cols=132 Identities=19% Similarity=0.248 Sum_probs=105.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.+.|...+.+|...-- ...++..-..++|||+.++.-.+.|..+| ...|++...+|++++
T Consensus 416 e~eK~~ii~~L~k~E~-----------------~~~sskg~rGQtIVFT~SRrr~h~lA~~L---~~kG~~a~pYHaGL~ 475 (830)
T COG1202 416 ESEKWDIIARLVKREF-----------------STESSKGYRGQTIVFTYSRRRCHELADAL---TGKGLKAAPYHAGLP 475 (830)
T ss_pred chHHHHHHHHHHHHHH-----------------hhhhccCcCCceEEEecchhhHHHHHHHh---hcCCcccccccCCCc
Confidence 5678888888886531 01112234568999999999999999999 556999999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE----eCCCC-ChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VDHDW-SPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d~~w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
-.+|..+-..|.. +.+.+++ +|.+.+.|++++ |+.||| +...| +|..+.|..||++|.+-...-.||-++..
T Consensus 476 y~eRk~vE~~F~~-q~l~~VV-TTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 476 YKERKSVERAFAA-QELAAVV-TTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HHHHHHHHHHHhc-CCcceEe-ehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999999994 5566644 789999999987 556666 44556 89999999999999999888888888754
No 103
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.59 E-value=2.3e-07 Score=98.71 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=87.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++|||++....++.+...|.+...+.+.+..+||++++.+|.++++. .+. +-+|++|+++.+||++.+.++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~-rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSG-RRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCC-eeEEEeccHHhhccccCcceEEE
Confidence 45789999999999999999996655555668899999999999887664 233 44567999999999999999999
Q ss_pred EeC---------------CCCCh---hhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 159 FVD---------------HDWSP---MKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 159 ~~d---------------~~wnp---~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
.++ ++-.| ..+.||.||++|. .+-.+|+|+++...
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 985 33333 5688888888887 45778899986543
No 104
>PRK09694 helicase Cas3; Provisional
Probab=98.59 E-value=4.7e-07 Score=93.92 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHH----HHHHHHhcCCCCe--eEEEecccccccccCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTAR----HAIVTKFNSDPTI--DVLLLTTQVGGLGLNL 151 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R----~~~v~~F~~~~~~--~vlLlst~~~~~GlnL 151 (292)
..+++++|||+....+..+.+.|.+...+...+..+||+++..+| +++++.|..++.. ..+|++|.+...|+|+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 468899999999999999999995432234689999999999988 4678899433332 3567899999999999
Q ss_pred CCCCEEEEeCCCCChhhHHHHhHhhhhcCCc
Q psy15261 152 TGADTVIFVDHDWSPMKDLQAMDRAHRIGQK 182 (292)
Q Consensus 152 ~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~ 182 (292)
.++.+|....| ...+.||+||+||.|.+
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 57888876555 56789999999999974
No 105
>KOG0351|consensus
Probab=98.54 E-value=1.6e-07 Score=97.59 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=97.3
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
......||||..+...+.+...|.+ .++....+|+++++++|..+...|..+ .++| ++.|-+.|.|||-.+...|
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~---~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~V-ivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRS---LGKSAAFYHAGLPPKERETVQKAWMSD-KIRV-IVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHH---hchhhHhhhcCCCHHHHHHHHHHHhcC-CCeE-EEEEeeccCCCCCCceeEE
Confidence 5678899999999999999999944 579999999999999999999999964 4665 5577999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEE
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv 191 (292)
|+|..|-+...|-|.+||++|.|+...++.|+=+
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 9999999999999999999999999887777433
No 106
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.54 E-value=2.8e-07 Score=83.42 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=76.3
Q ss_pred HHHHHhcCCCCeeEEEecccccccccCCCCC--------CEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 124 AIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA--------DTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 124 ~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a--------~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
...++|++ +...|+|+| ++|++|+.|+.- ...|.+++||+.....|-+||+||.||..+..+..+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 56779995 556788876 999999999842 24667999999999999999999999997744444566667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Q psy15261 196 LEEKIMNLQKFKLLTANTVINSENR 220 (292)
Q Consensus 196 vEe~i~~~~~~K~~~~~~vv~~~~~ 220 (292)
.|.+......+|.....++...+-.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~ 154 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRR 154 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCccc
Confidence 8999999999999887777765443
No 107
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.45 E-value=6.9e-07 Score=84.32 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=69.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
++.|+||||+....++.+...|... ..++.+..++|.+++.+|.+.. ... +|++|+++++|+|+... +||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~-~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ-GLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh-CCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCCc-eEE
Confidence 5789999999999999999999431 1246788999999998887543 233 56788999999999764 666
Q ss_pred EeCCCCChhhHHHHhHhhh
Q psy15261 159 FVDHDWSPMKDLQAMDRAH 177 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~ 177 (292)
++ |-++..|.||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 668889999998874
No 108
>PRK09401 reverse gyrase; Reviewed
Probab=98.42 E-value=8.8e-07 Score=94.71 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHH---HHHHHHHHhccCCCCceEEEEECCC
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAM---LDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~---l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.|...|.+++..+ +.++||||+.... ++.|..+| ...|+++..+||++
T Consensus 315 ~k~~~L~~ll~~l--------------------------~~~~LIFv~t~~~~~~ae~l~~~L---~~~gi~v~~~hg~l 365 (1176)
T PRK09401 315 DSVEKLVELVKRL--------------------------GDGGLIFVPSDKGKEYAEELAEYL---EDLGINAELAISGF 365 (1176)
T ss_pred cHHHHHHHHHHhc--------------------------CCCEEEEEecccChHHHHHHHHHH---HHCCCcEEEEeCcH
Confidence 5777788887664 2479999998766 99999999 45689999999998
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEec---ccccccccCCCC-CCEEEEeCCCC------ChhhHHHHhHhhhhc
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG-ADTVIFVDHDW------SPMKDLQAMDRAHRI 179 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLls---t~~~~~GlnL~~-a~~vI~~d~~w------np~~~~Qa~gR~~Ri 179 (292)
.+.+++|. ++.++||+.+ |+++++|||++. .++||||+.|- ....+.++++|.-.+
T Consensus 366 -----~~~l~~F~-~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 366 -----ERKFEKFE-EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred -----HHHHHHHH-CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 23469999 5778998886 799999999998 89999999997 566778888888644
No 109
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.31 E-value=7.7e-06 Score=83.78 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=87.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
.....+|||++.+.+.+.+...|.+. .+..+..-||+.+...|...-++|++ +..++++ +|.....|||.-..+.|
T Consensus 251 ~~~~ttLIF~NTR~~aE~l~~~L~~~--~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV-~TSSLELGIDiG~vdlV 326 (814)
T COG1201 251 KKHRTTLIFTNTRSGAERLAFRLKKL--GPDIIEVHHGSLSRELRLEVEERLKE-GELKAVV-ATSSLELGIDIGDIDLV 326 (814)
T ss_pred hhcCcEEEEEeChHHHHHHHHHHHHh--cCCceeeecccccHHHHHHHHHHHhc-CCceEEE-EccchhhccccCCceEE
Confidence 34458999999999999999999543 23788999999999999999999995 5588866 55888999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhh-hcCCcc
Q psy15261 158 IFVDHDWSPMKDLQAMDRAH-RIGQKK 183 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~-RiGQ~~ 183 (292)
|.+..|-.-....||+||++ |+|...
T Consensus 327 Iq~~SP~sV~r~lQRiGRsgHr~~~~S 353 (814)
T COG1201 327 IQLGSPKSVNRFLQRIGRAGHRLGEVS 353 (814)
T ss_pred EEeCCcHHHHHHhHhccccccccCCcc
Confidence 99999999999999999986 555543
No 110
>KOG0352|consensus
Probab=98.26 E-value=1.8e-06 Score=81.39 Aligned_cols=105 Identities=20% Similarity=0.304 Sum_probs=93.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
..--||||..++..+.+.-.| ...|++...+|.++...+|..+.+.|.++ .+.| |+.|-..|.|++-.....||+
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l---~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~Pv-I~AT~SFGMGVDKp~VRFViH 329 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIML---EIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIPV-IAATVSFGMGVDKPDVRFVIH 329 (641)
T ss_pred CcceEEEeccHHHHHHHHHHh---hhcCcchHHHhcccccchhHHHHHHHhcC-CCCE-EEEEeccccccCCcceeEEEe
Confidence 345699999999999999999 66799999999999999999999999954 4445 557799999999999999999
Q ss_pred eCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 160 VDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
.+++-|-.-|.|--||++|.|-..-+..|+
T Consensus 330 W~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 330 WSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cCchhhhHHHHHhccccccCCCccceeeee
Confidence 999999999999999999999888888874
No 111
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=8.3e-06 Score=80.40 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCHHHH--HHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCC--CC-h-
Q psy15261 93 LDIVENDLFKCEMPGVTYLRLDGSVVSTAR--HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD--WS-P- 166 (292)
Q Consensus 93 l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R--~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~--wn-p- 166 (292)
.+.+++.|.+ .+|+.++.++|+.++..++ +.+++.|.+ +.+++|+ .|+..+.|+|+.+++.|++++.+ .+ |
T Consensus 271 te~~~e~l~~-~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAK-LFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHh-hCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 4677777754 4678999999999876655 889999994 5566655 67889999999999999776554 22 3
Q ss_pred --------hhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 167 --------MKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 167 --------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
..+.|+.||++|.+....|.+..+-..
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 457899999999888777766544443
No 112
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.23 E-value=6.2e-06 Score=88.38 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=66.9
Q ss_pred CeEEEEeccH---HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec---ccccccccCCCC-
Q psy15261 81 HRALIFCQLR---AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG- 153 (292)
Q Consensus 81 ~KvlIFsq~~---~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls---t~~~~~GlnL~~- 153 (292)
.++|||++.. ..++.|...| ...|+++..+||.++. ..+++|. ++.++||+.+ |+++++|||+++
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L---~~~g~~a~~lhg~~~~----~~l~~Fr-~G~~~vLVata~~tdv~aRGIDip~~ 398 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFL---ENHGVKAVAYHATKPK----EDYEKFA-EGEIDVLIGVASYYGTLVRGLDLPER 398 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHH---HhCCceEEEEeCCCCH----HHHHHHH-cCCCCEEEEeccccCcccccCCCCcc
Confidence 4689999998 8999999999 4458999999999863 6899999 5778998886 699999999998
Q ss_pred CCEEEEeCCCC
Q psy15261 154 ADTVIFVDHDW 164 (292)
Q Consensus 154 a~~vI~~d~~w 164 (292)
.++||||+.|-
T Consensus 399 V~~vI~~~~P~ 409 (1171)
T TIGR01054 399 VRYAVFLGVPK 409 (1171)
T ss_pred ccEEEEECCCC
Confidence 79999999984
No 113
>PRK14701 reverse gyrase; Provisional
Probab=98.09 E-value=1.1e-05 Score=88.58 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCeEEEEeccHHH---HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecc---cccccccCCCC
Q psy15261 80 QHRALIFCQLRAM---LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT---QVGGLGLNLTG 153 (292)
Q Consensus 80 ~~KvlIFsq~~~~---l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst---~~~~~GlnL~~ 153 (292)
+..+||||+.... ++.+...| ...|+++..+||. |...+++|. .+.++||+.+. +++++|||++.
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L---~~~Gi~a~~~h~~-----R~~~l~~F~-~G~~~VLVaT~s~~gvaaRGIDiP~ 400 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYL---LEDGFKIELVSAK-----NKKGFDLFE-EGEIDYLIGVATYYGTLVRGLDLPE 400 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHH---HHCCCeEEEecch-----HHHHHHHHH-cCCCCEEEEecCCCCeeEecCccCC
Confidence 3578999998764 58889999 5569999999994 889999999 56778888764 68999999998
Q ss_pred -CCEEEEeCCCC---ChhhHHHH-------------hHhhhhcCCc
Q psy15261 154 -ADTVIFVDHDW---SPMKDLQA-------------MDRAHRIGQK 182 (292)
Q Consensus 154 -a~~vI~~d~~w---np~~~~Qa-------------~gR~~RiGQ~ 182 (292)
..+||||+.|- +...+.|. .+|++|-|..
T Consensus 401 ~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 401 RIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred ccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 99999999997 55544454 4899988854
No 114
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.09 E-value=2e-05 Score=80.67 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=94.6
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..++.+-+.++. ..|+.|||.|.+....+.|...| ...|+++.+++....
T Consensus 408 ~~~K~~Aii~ei~~~~-----------------------~~gqPVLVgT~SIe~SE~ls~~L---~~~gi~h~vLNAk~~ 461 (925)
T PRK12903 408 KHAKWKAVVKEVKRVH-----------------------KKGQPILIGTAQVEDSETLHELL---LEANIPHTVLNAKQN 461 (925)
T ss_pred HHHHHHHHHHHHHHHH-----------------------hcCCCEEEEeCcHHHHHHHHHHH---HHCCCCceeecccch
Confidence 4468888888888874 67999999999999999999999 456899999998643
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCC--------EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD--------TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~--------~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+++..+-. + .+....+.++|..+|+|-++.-.. |||..+.+-|...+.|..||++|.|.......|
T Consensus 462 --e~EA~IIa-~-AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 462 --AREAEIIA-K-AGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred --hhHHHHHH-h-CCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 33333322 2 233344566889999999875433 999999999999999999999999998776665
No 115
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.02 E-value=5.6e-05 Score=75.37 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=84.0
Q ss_pred CCCCeEEEEeccHHH--------HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccccc
Q psy15261 78 LTQHRALIFCQLRAM--------LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL 149 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~--------l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl 149 (292)
..|+++-+.|...+. +..+...|. ...+++.+..+||.++++++++++.+|++ +.+++|+ +|.+--.|+
T Consensus 471 ~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~-~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILV-aTTVIEVGV 547 (677)
T COG1200 471 AKGRQAYVVCPLIEESEKLELQAAEELYEELK-SFLPELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILV-ATTVIEVGV 547 (677)
T ss_pred HcCCEEEEEeccccccccchhhhHHHHHHHHH-HHcccceeEEEecCCChHHHHHHHHHHHc-CCCcEEE-EeeEEEecc
Confidence 689999999976543 334444554 35678899999999999999999999994 5666655 778899999
Q ss_pred CCCCCCEEEEeCCC-CChhhHHHHhHhhhhcCCcceE
Q psy15261 150 NLTGADTVIFVDHD-WSPMKDLQAMDRAHRIGQKKVV 185 (292)
Q Consensus 150 nL~~a~~vI~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V 185 (292)
|+++|+.+|+.+.. +--+..-|-=||++|-+...-|
T Consensus 548 dVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 548 DVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred cCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 99999999999877 6677788999999997765543
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.01 E-value=3.8e-05 Score=79.09 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=94.4
Q ss_pred CCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC--CCCeeEEEecccccccccCCCC
Q psy15261 76 SILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS--DPTIDVLLLTTQVGGLGLNLTG 153 (292)
Q Consensus 76 ~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~--~~~~~vlLlst~~~~~GlnL~~ 153 (292)
.+..+.|++|-++....+..+...|.. .+..++.+|+......|.+..+.... ..+-..++++|++.-.|+|+.
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~---~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKE---KGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHh---cCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 457899999999999999999999833 33379999999999999988886542 122234677899999999986
Q ss_pred CCEEEEeCCCCChhhHHHHhHhhhhcC--CcceEEEEEEEeCCCHHHHHHHHHHHHHH
Q psy15261 154 ADTVIFVDHDWSPMKDLQAMDRAHRIG--QKKVVNVYRLITKNTLEEKIMNLQKFKLL 209 (292)
Q Consensus 154 a~~vI~~d~~wnp~~~~Qa~gR~~RiG--Q~~~V~Vy~lv~~~TvEe~i~~~~~~K~~ 209 (292)
.+.+| -|+. -.....||.||++|-| ....+.||.....+....+.+.....+..
T Consensus 512 fd~mI-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 512 FDVLI-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred cCeee-ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhc
Confidence 44443 3332 2345789999999999 55668888777777766666665554443
No 117
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.0002 Score=66.20 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=89.3
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+..++||.....+++-+...|.+ ..+...+..+|... ..|.+.+++|+ ++.+. +|++|...-+|++++..+..
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d--~~R~EkV~~fR-~G~~~-lLiTTTILERGVTfp~vdV~ 377 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSED--QHRKEKVEAFR-DGKIT-LLITTTILERGVTFPNVDVF 377 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccC--ccHHHHHHHHH-cCceE-EEEEeehhhcccccccceEE
Confidence 5789999999999999999988844 45666667777665 67899999999 45554 56688999999999999988
Q ss_pred EEeCCC--CChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 158 IFVDHD--WSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 158 I~~d~~--wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
++-... ++.....|-.||++|-=...+-.|+.|..--|
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 886555 78889999999999987665666665554433
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.97 E-value=0.00018 Score=69.86 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=102.1
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE
Q psy15261 77 ILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 77 ~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
++.++|+||-+-.+.|.+-|.++| ...|+++..+|.....-+|.++++..+ -+.++||+ .....-+||+++.++-
T Consensus 443 ~~~~eRvLVTtLTKkmAEdLT~Yl---~e~gikv~YlHSdidTlER~eIirdLR-~G~~DvLV-GINLLREGLDiPEVsL 517 (663)
T COG0556 443 VAKNERVLVTTLTKKMAEDLTEYL---KELGIKVRYLHSDIDTLERVEIIRDLR-LGEFDVLV-GINLLREGLDLPEVSL 517 (663)
T ss_pred HhcCCeEEEEeehHHHHHHHHHHH---HhcCceEEeeeccchHHHHHHHHHHHh-cCCccEEE-eehhhhccCCCcceeE
Confidence 467899999999999999999999 667999999999999999999999999 46667755 6788999999999999
Q ss_pred EEEeCCCC-----ChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHH
Q psy15261 157 VIFVDHDW-----SPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKF 206 (292)
Q Consensus 157 vI~~d~~w-----np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~ 206 (292)
|.++|-+- +....+|-|||+-|--.. .|..|-=...+++++.|-+..++
T Consensus 518 VAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 518 VAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred EEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 99999874 677889999999996543 35555444456777777654433
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.93 E-value=6.8e-05 Score=75.79 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=94.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..++.+-+.++. ..|+.|||.|.+....+.|...| ...|+++.+++....
T Consensus 409 ~~~k~~Aii~ei~~~~-----------------------~~GrPVLVgt~sI~~SE~ls~~L---~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 409 AAEKNDAIVEHIAEVH-----------------------ETGQPVLVGTHDVAESEELAERL---RAAGVPAVVLNAKND 462 (764)
T ss_pred HHHHHHHHHHHHHHHH-----------------------HcCCCEEEEeCCHHHHHHHHHHH---HhCCCcceeeccCch
Confidence 3458888888777764 68999999999999999999999 556899999998754
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC---------------CCCEEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---------------GADTVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~---------------~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
..+ ..++.+-- ....+.++|..+|+|-|+. +.=|||-.+.+-|...+.|..||++|.|...
T Consensus 463 ~~E-A~IIa~AG---~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 463 AEE-ARIIAEAG---KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred HhH-HHHHHhcC---CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 333 34444433 2234566889999998864 4458999999999999999999999999987
Q ss_pred eEEEE
Q psy15261 184 VVNVY 188 (292)
Q Consensus 184 ~V~Vy 188 (292)
....|
T Consensus 539 ss~f~ 543 (764)
T PRK12326 539 SSVFF 543 (764)
T ss_pred ceeEE
Confidence 76666
No 120
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.86 E-value=7.7e-05 Score=77.12 Aligned_cols=59 Identities=22% Similarity=0.194 Sum_probs=41.8
Q ss_pred CEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHH-HHHHhc
Q psy15261 155 DTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLT-ANTVIN 216 (292)
Q Consensus 155 ~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~-~~~vv~ 216 (292)
++||+|||.-...+..|. -|++|.|. ++.||.|+..+|+||.-|-...+|+.- +..++.
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIr 537 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIR 537 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999777777771 13333333 488999999999999888766666544 333443
No 121
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.79 E-value=0.00014 Score=74.27 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCCCCceEEEEECCCC--HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCC--CC-
Q psy15261 91 AMLDIVENDLFKCEMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD--WS- 165 (292)
Q Consensus 91 ~~l~~l~~~L~~~~~~~~~~~~i~G~~~--~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~--wn- 165 (292)
.-.+.+++.|.+ .+|+.++.++|+.+. ..++++++++|.+ +.+++|+ .|+..+.|+|+++.+.|++++.+ -+
T Consensus 437 ~G~e~~~e~l~~-~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 437 PGTERLEEELAE-LFPEARILRIDRDTTRRKGALEQLLAQFAR-GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred ccHHHHHHHHHH-hCCCCcEEEEeccccccchhHHHHHHHHhc-CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhccC
Confidence 345667777744 457899999999986 4678999999995 5666665 67889999999999999887655 22
Q ss_pred h---------hhHHHHhHhhhhcCCcceEEEEEEEe
Q psy15261 166 P---------MKDLQAMDRAHRIGQKKVVNVYRLIT 192 (292)
Q Consensus 166 p---------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 192 (292)
| ..+.|+.||++|.|....|.+...-.
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 2 46789999999988877777655433
No 122
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.76 E-value=0.00033 Score=73.64 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=92.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
.+|.+|-...+..+.+..+...|.. -.|.-++.+.||.|+..+-++++..|. ++..+|||++ ..--.|||+++||++
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~-LVPEarI~vaHGQM~e~eLE~vM~~F~-~g~~dVLv~T-TIIEtGIDIPnANTi 877 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRE-LVPEARIAVAHGQMRERELEEVMLDFY-NGEYDVLVCT-TIIETGIDIPNANTI 877 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHH-hCCceEEEEeecCCCHHHHHHHHHHHH-cCCCCEEEEe-eeeecCcCCCCCceE
Confidence 4778888888888889888888865 568889999999999999999999999 5777887765 555679999999999
Q ss_pred EEeCCC-CChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 158 IFVDHD-WSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 158 I~~d~~-wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
|+-.-+ +--+..-|-=||+||-. +.-+.|.++..
T Consensus 878 IIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 878 IIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred EEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 998776 56778889888888854 56788888875
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.00028 Score=73.20 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..++.+-+.++. ..|+.|||-|.+....+.|...| ...|+++.+++.....
T Consensus 551 ~~k~~ai~~ei~~~~-----------------------~~grPvLigt~si~~se~ls~~L---~~~gi~h~vLNak~~~ 604 (970)
T PRK12899 551 REKYHAIVAEIASIH-----------------------RKGNPILIGTESVEVSEKLSRIL---RQNRIEHTVLNAKNHA 604 (970)
T ss_pred HHHHHHHHHHHHHHH-----------------------hCCCCEEEEeCcHHHHHHHHHHH---HHcCCcceecccchhh
Confidence 468888888777774 67899999999999999999999 5568999888886432
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCC--------CCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------GADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~--------~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+- .++.+-- ....+.++|..+|+|-++. +.=|||..+.+-|...+.|..||++|.|.......|
T Consensus 605 ~Ea-~iia~AG---~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 605 QEA-EIIAGAG---KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred hHH-HHHHhcC---CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 222 3444332 2234566889999998863 445899999999999999999999999998776655
No 124
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.59 E-value=0.00022 Score=74.41 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=94.0
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..++.+-+.++. ..|+.|||-|.+...-+.|.+.| ...|+++-+++.....
T Consensus 611 ~eK~~Aii~ei~~~~-----------------------~~GrPVLVGT~SVe~SE~lS~~L---~~~gI~H~VLNAK~h~ 664 (1112)
T PRK12901 611 REKYNAVIEEITELS-----------------------EAGRPVLVGTTSVEISELLSRML---KMRKIPHNVLNAKLHQ 664 (1112)
T ss_pred HHHHHHHHHHHHHHH-----------------------HCCCCEEEEeCcHHHHHHHHHHH---HHcCCcHHHhhccchh
Confidence 468888888888874 68999999999999999999999 5568888888876543
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCC--------CCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------GADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~--------~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+- .++.+=- ....+-++|..+|+|-++. +.=|||--+.+-+...+.|.-||++|.|.......|
T Consensus 665 ~EA-eIVA~AG---~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 665 KEA-EIVAEAG---QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred hHH-HHHHhcC---CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 332 3444332 2233466889999998875 567999999999999999999999999998765555
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.46 E-value=0.00043 Score=71.58 Aligned_cols=120 Identities=20% Similarity=0.197 Sum_probs=93.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..++.+-+.++. ..|+.|||-|.+....+.|.+.| ...++++-+++....
T Consensus 431 ~~eK~~Ai~~ei~~~~-----------------------~~GrPVLVGT~SVe~SE~ls~~L---~~~gi~h~VLNAk~~ 484 (913)
T PRK13103 431 AEEKYAAIITDIKECM-----------------------ALGRPVLVGTATIETSEHMSNLL---KKEGIEHKVLNAKYH 484 (913)
T ss_pred HHHHHHHHHHHHHHHH-----------------------hCCCCEEEEeCCHHHHHHHHHHH---HHcCCcHHHhccccc
Confidence 3468888888888874 68999999999999999999999 556888888877643
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC-------------------------------------CCCEEEEeC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT-------------------------------------GADTVIFVD 161 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~-------------------------------------~a~~vI~~d 161 (292)
..+ ..++.+= +....+.++|..+|+|-|+. +.=|||--+
T Consensus 485 ~~E-A~IIa~A---G~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTe 560 (913)
T PRK13103 485 EKE-AEIIAQA---GRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASE 560 (913)
T ss_pred hhH-HHHHHcC---CCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeec
Confidence 222 2344422 22334566889999998873 455899999
Q ss_pred CCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 162 HDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 162 ~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+-|...+.|.-||++|.|.......|
T Consensus 561 rheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 561 RHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred cCchHHHHHHhccccccCCCCCceEEE
Confidence 999999999999999999998776665
No 126
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.32 E-value=0.00084 Score=70.12 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHH----HHHhccC-CCCceEEEEEC
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVE----NDLFKCE-MPGVTYLRLDG 115 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~----~~L~~~~-~~~~~~~~i~G 115 (292)
++...+..++..+ +..+-|+|+|+-+...+..+. ..+.... .....+...+|
T Consensus 290 s~~~~~~~~~~~~-----------------------~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~ 346 (851)
T COG1205 290 SALAELATLAALL-----------------------VRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA 346 (851)
T ss_pred chHHHHHHHHHHH-----------------------HHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccc
Confidence 5666677777665 468899999999999998885 3331111 12267889999
Q ss_pred CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC-ChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 116 SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW-SPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 116 ~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
++...+|.++...|+. +.+.+ +++|.+.-.|+++...+.||....|- .-..+.|+.||++|-||.- .++...-.+
T Consensus 347 ~~~~~er~~ie~~~~~-g~~~~-~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v~~~~ 422 (851)
T COG1205 347 GLHREERRRIEAEFKE-GELLG-VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVVLRSD 422 (851)
T ss_pred cCCHHHHHHHHHHHhc-CCccE-EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEEeCCC
Confidence 9999999999999995 55555 55889999999999999999999998 7788999999999999543 222233366
Q ss_pred CHHHHHHH
Q psy15261 195 TLEEKIMN 202 (292)
Q Consensus 195 TvEe~i~~ 202 (292)
.++.....
T Consensus 423 ~~d~yy~~ 430 (851)
T COG1205 423 PLDSYYLR 430 (851)
T ss_pred ccchhhhh
Confidence 67766654
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.32 E-value=0.0022 Score=65.47 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=80.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCC--CceEEEEECCCCHH---------------------HHHHHHHHhcCCCCee
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMP--GVTYLRLDGSVVST---------------------ARHAIVTKFNSDPTID 136 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~--~~~~~~i~G~~~~~---------------------~R~~~v~~F~~~~~~~ 136 (292)
+.|++|||.++..+..+.+.|.+.... +...+.++|+.+.. ...+++++|..++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 589999999999988888877442211 24566777765432 1247899998666666
Q ss_pred EEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhc-CC-cceEEEEEEEe
Q psy15261 137 VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRI-GQ-KKVVNVYRLIT 192 (292)
Q Consensus 137 vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~Ri-GQ-~~~V~Vy~lv~ 192 (292)
+++ ..+...+|.|.+.++++++.-|--+. ...|++||+.|+ +. +....|+.++-
T Consensus 594 ilI-VvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLI-VVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEE-EEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 665 45899999999999998887766544 578999999995 43 34466766654
No 128
>KOG0353|consensus
Probab=97.30 E-value=0.00035 Score=65.35 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=92.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.|+.-+|||-+....+.+...| ...|+..-.+|..+.+.+|...-+.|- .+.++|++ .|-+.|.|++-++...||
T Consensus 316 ~gqsgiiyc~sq~d~ekva~al---kn~gi~a~~yha~lep~dks~~hq~w~-a~eiqviv-atvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKAL---KNHGIHAGAYHANLEPEDKSGAHQGWI-AGEIQVIV-ATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred CCCcceEEEeccccHHHHHHHH---HhcCccccccccccCcccccccccccc-ccceEEEE-EEeeecccCCCCCeeEEE
Confidence 4777899999999999999999 556899999999999999988888887 46677766 668899999999999999
Q ss_pred EeCCCCChhhHHH-------------------------------------------HhHhhhhcCCcceEEEEEEE
Q psy15261 159 FVDHDWSPMKDLQ-------------------------------------------AMDRAHRIGQKKVVNVYRLI 191 (292)
Q Consensus 159 ~~d~~wnp~~~~Q-------------------------------------------a~gR~~RiGQ~~~V~Vy~lv 191 (292)
+-.+|-+...|.| --||++|.|++-++..|+-.
T Consensus 391 hhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 391 HHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred ecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 9999999999999 45888999999877766543
No 129
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.10 E-value=0.0016 Score=67.30 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhc--------cCCC-------C-------------------ceEEEEECCCCHHHHH
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFK--------CEMP-------G-------------------VTYLRLDGSVVSTARH 123 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~--------~~~~-------~-------------------~~~~~i~G~~~~~~R~ 123 (292)
+.+..+|||++++.......+.|.. ...+ . ..+..-|.+++.+.|+
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 7899999999998876666666641 0000 0 1233456788899999
Q ss_pred HHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC----------CCChhhHHHHhHhhhhcCCc
Q psy15261 124 AIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH----------DWSPMKDLQAMDRAHRIGQK 182 (292)
Q Consensus 124 ~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~----------~wnp~~~~Qa~gR~~RiGQ~ 182 (292)
-+-+.|+ .+.++|++ +|...+.|+||+ |.+||+-|. +-++..+.|.+||++|.|=.
T Consensus 331 ~vE~~Fr-~g~ikVlv-~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 331 LVEDAFR-KGKIKVLV-STPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred HHHHHHh-cCCceEEE-echHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC
Confidence 9999999 67888766 667778899998 455555332 23566788999999999965
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.09 E-value=0.0021 Score=65.57 Aligned_cols=110 Identities=15% Similarity=0.262 Sum_probs=87.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccC--CCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCE--MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~--~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
-.|+||||...+.++.+...|.... ..+--+..|+|... +-++.++.|........+.++.+...+|++.+.+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 5799999999999999999985521 22445788888864 4456789998655556677788999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcC-------Ccc-eEEEEEEE
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIG-------QKK-VVNVYRLI 191 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiG-------Q~~-~V~Vy~lv 191 (292)
+|+-.--+...+.|.+||.-|+- |.| ...|+.++
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 99999999999999999999872 333 36666654
No 131
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.79 E-value=0.0039 Score=52.45 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=51.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCC-CCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccc--ccccccCCCC--
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEM-PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ--VGGLGLNLTG-- 153 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~-~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~--~~~~GlnL~~-- 153 (292)
.+.++|||+.+-..++.+...+..... .++.+.. .+ ...+..++++|..+.+ .+|+++. ...+|+|+.+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~~--~il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGEG--AILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSSS--EEEEEETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhccC--eEEEEEecccEEEeecCCCch
Confidence 458999999999999999998843210 1333222 22 3577889999997544 3444555 7899999975
Q ss_pred CCEEEEeCCCC
Q psy15261 154 ADTVIFVDHDW 164 (292)
Q Consensus 154 a~~vI~~d~~w 164 (292)
+..||+.-+|+
T Consensus 82 ~r~vii~glPf 92 (167)
T PF13307_consen 82 LRAVIIVGLPF 92 (167)
T ss_dssp EEEEEEES---
T ss_pred hheeeecCCCC
Confidence 88999999887
No 132
>KOG0329|consensus
Probab=96.64 E-value=0.001 Score=59.38 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=42.4
Q ss_pred EecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 139 LLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 139 Llst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
+++|+..|+|++..+.|.+|+||.|-.+..|.++.+|++|.|-+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 568899999999999999999999999999999999999999764
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.61 E-value=0.014 Score=60.48 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..++.+-+.++. ..|+.|||-|.+....+.|...| ...|+++.+++.....
T Consensus 407 ~~K~~AI~~ei~~~~-----------------------~~grPVLIgT~SIe~SE~ls~~L---~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 407 LSKWRAIADECLQMH-----------------------QTGRPILIGTTTIEKSELLSQLL---KEYRLPHQLLNAKPEN 460 (870)
T ss_pred HHHHHHHHHHHHHHH-----------------------hcCCCEEEeeCCHHHHHHHHHHH---HHcCCccceeeCCCcc
Confidence 357777777766663 68999999999999999999999 5568999999986422
Q ss_pred HHH-HHHHHHhcCCCCeeEEEecccccccccCC
Q psy15261 120 TAR-HAIVTKFNSDPTIDVLLLTTQVGGLGLNL 151 (292)
Q Consensus 120 ~~R-~~~v~~F~~~~~~~vlLlst~~~~~GlnL 151 (292)
.++ ..++.+=- ....+.++|..+|+|.|+
T Consensus 461 ~~~EA~IIA~AG---~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 461 VRRESEIVAQAG---RKGSITIATNMAGRGTDI 490 (870)
T ss_pred chhHHHHHHhcC---CCCcEEEeccccCCCcCe
Confidence 223 34554422 223456688999999664
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.55 E-value=0.02 Score=60.18 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=56.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCC--C
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA--D 155 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a--~ 155 (292)
.+.++|||+.+..+++.+...|... ...++.+.. .| .. ..|.+++++|... ...|| +.+.+..+|+|+.+. .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~-q~-~~-~~r~~ll~~F~~~-~~~iL-lgt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA-QG-IN-GSRAKIKKRFNNG-EKAIL-LGTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe-cC-CC-ccHHHHHHHHHhC-CCeEE-EEcceeecccccCCCceE
Confidence 4568999999999999999888431 113444332 33 22 4788999999863 33454 467999999999874 4
Q ss_pred EEEEeCCCC
Q psy15261 156 TVIFVDHDW 164 (292)
Q Consensus 156 ~vI~~d~~w 164 (292)
.||+.-+|+
T Consensus 748 ~viI~~LPf 756 (850)
T TIGR01407 748 CLVIPRLPF 756 (850)
T ss_pred EEEEeCCCC
Confidence 677777776
No 135
>KOG0922|consensus
Probab=96.52 E-value=0.01 Score=59.21 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=84.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccC--CC-Cc--eEEEEECCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCE--MP-GV--TYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~--~~-~~--~~~~i~G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~ 152 (292)
+..=+|||-...+.++.....|.... .+ +. -++.++|+++.++..++ |...+ +++-++++|..+-+.++..
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 34578999999988888777774421 11 11 35779999999776544 66543 7888899999999999999
Q ss_pred CCCEEEEeC----CCCCh-----------hhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 153 GADTVIFVD----HDWSP-----------MKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 153 ~a~~vI~~d----~~wnp-----------~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
+..+||=-. ..||| ..-.||.-|+||.|.+.+..+|||+++.-.
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 988876211 12343 345678888888899999999999998765
No 136
>KOG4150|consensus
Probab=96.26 E-value=0.019 Score=56.62 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=91.1
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHH----hccCCC-CceEE
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDL----FKCEMP-GVTYL 111 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L----~~~~~~-~~~~~ 111 (292)
-+.+.|+.....++.++ +..+-|++-||..+...+.+.... ...... --.+.
T Consensus 505 ~~~~~~i~E~s~~~~~~-----------------------i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~ 561 (1034)
T KOG4150|consen 505 SEKSSKVVEVSHLFAEM-----------------------VQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAIT 561 (1034)
T ss_pred hhhhhHHHHHHHHHHHH-----------------------HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44567788778888776 467899999999998877655332 111100 01345
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCc
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK 182 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~ 182 (292)
.+.|+...++|.++-...- .++..- +++|.+...||++..-+.|+.+..|.+.+...|-.||++|-...
T Consensus 562 SYRGGY~A~DRRKIE~~~F-~G~L~g-iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLF-GGKLCG-IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred hhcCccchhhHHHHHHHhh-CCeeeE-EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 6789999999988877655 455544 55889999999999999999999999999999999999986543
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=96.12 E-value=0.028 Score=58.07 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=80.2
Q ss_pred CCCCCeEEEEeccHH-----------HHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEeccc
Q psy15261 77 ILTQHRALIFCQLRA-----------MLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQ 143 (292)
Q Consensus 77 ~~~~~KvlIFsq~~~-----------~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLlst~ 143 (292)
-++-+|++-||.... +++.....|.+. .--.+.+--++|.+...+|.+....-+. .++.+-+|-..+
T Consensus 457 ~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaR 536 (1518)
T COG4889 457 TAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNAR 536 (1518)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccch
Confidence 355678888885443 333333333221 1124556678999999999766654433 345555677899
Q ss_pred ccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcce-EEEEEEE
Q psy15261 144 VGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV-VNVYRLI 191 (292)
Q Consensus 144 ~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~-V~Vy~lv 191 (292)
+.++|++.+.-+.||||+|--+.....|++||+-|-.-.|. -+|.--|
T Consensus 537 cLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 537 CLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred hhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999888889999999999876543 4444333
No 138
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.046 Score=56.96 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=82.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCC-CCceEEEEECCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCCCCE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEM-PGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~-~~~~~~~i~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~a~~ 156 (292)
...-+|||-.-...++.....|.+... +.+.++.++|.++.++..+ -|+..+. .+-++++|.++-++|++.+..+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 467799999999988888888855223 5789999999999988766 4665433 3557889999999999999988
Q ss_pred EEEeCC----CCChhhH-----------HHHhHhhhhcCCcceEEEEEEEeCCCHH
Q psy15261 157 VIFVDH----DWSPMKD-----------LQAMDRAHRIGQKKVVNVYRLITKNTLE 197 (292)
Q Consensus 157 vI~~d~----~wnp~~~-----------~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvE 197 (292)
||=-.. -|||..- ..|.=|.+|.|.+.+-.+|||++++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 874221 2333221 1233355555666788999999985554
No 139
>KOG0950|consensus
Probab=95.86 E-value=0.022 Score=59.01 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCCCCCCCCeEEEEeccHHHHHHHHHHHhc------------------------cCCC-----------CceEEEEECC
Q psy15261 72 APPPSILTQHRALIFCQLRAMLDIVENDLFK------------------------CEMP-----------GVTYLRLDGS 116 (292)
Q Consensus 72 ~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~------------------------~~~~-----------~~~~~~i~G~ 116 (292)
+....+..+.++||||+.+.-.+.+...+.+ +..+ ...+...|.+
T Consensus 452 L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaG 531 (1008)
T KOG0950|consen 452 LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAG 531 (1008)
T ss_pred ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccc
Confidence 3455677888999999877543333211110 0001 1245566778
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCC-----CChhhHHHHhHhhhhcCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD-----WSPMKDLQAMDRAHRIGQ 181 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~-----wnp~~~~Qa~gR~~RiGQ 181 (292)
.+.++|+-+=..|+ .+.++|+..+ ...+.|.||+. .+||+=-|. -.-..|.|.+||++|.|=
T Consensus 532 LT~eER~~iE~afr-~g~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 532 LTSEEREIIEAAFR-EGNIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cccchHHHHHHHHH-hcCeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 88889976666777 5677776654 55788999974 555554333 245678999999999984
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.86 E-value=0.079 Score=53.95 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC--CC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG--AD 155 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~--a~ 155 (292)
.+.++|||+.+-.++..+...+... .. -.+...|..+ +..++++|...+.. .+++.+....+|+|+.+ +.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~---~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDE---RSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhc---CccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCee
Confidence 3448888888888888888888332 22 2455566544 44889999975543 56777899999999976 68
Q ss_pred EEEEeCCCCC
Q psy15261 156 TVIFVDHDWS 165 (292)
Q Consensus 156 ~vI~~d~~wn 165 (292)
.||+.-.|+-
T Consensus 551 ~vvI~~lPfp 560 (654)
T COG1199 551 LVVIVGLPFP 560 (654)
T ss_pred EEEEEecCCC
Confidence 8999888874
No 141
>KOG0952|consensus
Probab=95.68 E-value=0.041 Score=57.64 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccC-CCC-------------------ceEEEEECCCCHHHHHHHHHHhcCCCCeeE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCE-MPG-------------------VTYLRLDGSVVSTARHAIVTKFNSDPTIDV 137 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~-~~~-------------------~~~~~i~G~~~~~~R~~~v~~F~~~~~~~v 137 (292)
..|+.|+||++.+...-..++.|.... ..| .....-|.++..++|.-.-+.|. ++.+.|
T Consensus 347 ~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~-~G~i~v 425 (1230)
T KOG0952|consen 347 QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK-EGHIKV 425 (1230)
T ss_pred HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh-cCCceE
Confidence 579999999998876555555442211 111 12333466777888887778888 566666
Q ss_pred EEecccccccccCCCCCCEEEEeCCCCChhh----------HHHHhHhhhhcCCcceEEEEEEEeCCCHH
Q psy15261 138 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMK----------DLQAMDRAHRIGQKKVVNVYRLITKNTLE 197 (292)
Q Consensus 138 lLlst~~~~~GlnL~~a~~vI~~d~~wnp~~----------~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvE 197 (292)
+ ++|...+.|.||++-..+|--...|++.. ..|-+||+||.+=.+.-..+.+-+.+.++
T Consensus 426 L-~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 426 L-CCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred E-EecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 4 56788899999987666665566677654 57999999999755544444444444433
No 142
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.68 E-value=0.15 Score=49.44 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=83.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccc-cccccCCCCCCEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV-GGLGLNLTGADTV 157 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~-~~~GlnL~~a~~v 157 (292)
...++|||.++=-..-.|..+| ...++.++.++--++.++-.++...|.. +...+||.|-+. -=+=..+.++.+|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~l---k~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~v 374 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYL---KKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHV 374 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHH---HhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEE
Confidence 5678999997766666788888 5679999999999999999999999994 567888877443 1123456789999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCC----cceEEEEEEEeC
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQ----KKVVNVYRLITK 193 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ----~~~V~Vy~lv~~ 193 (292)
|||.+|-+|.-|..-+.-+..-.+ .....|..|+++
T Consensus 375 iFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 375 IFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 999999999999887765554443 233445445544
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.66 E-value=0.091 Score=55.84 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=55.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCC-CCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC--CC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEM-PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG--AD 155 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~-~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~--a~ 155 (292)
.+.++|||..+..++..+...|..... .++.. ...|. +...|.+++++|+..++ .|| +.+....+|+|+++ ..
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~l-l~Qg~-~~~~r~~l~~~F~~~~~-~iL-lG~~sFwEGVD~pg~~l~ 826 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVL-LAQGV-SSGSRARLTKQFQQFDK-AIL-LGTSSFWEGIDIPGDELS 826 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceE-EecCC-CCCCHHHHHHHHHhcCC-eEE-EecCcccCccccCCCceE
Confidence 445777777777888888888743211 22332 23342 22457889999986433 344 45688999999987 48
Q ss_pred EEEEeCCCC-Chh
Q psy15261 156 TVIFVDHDW-SPM 167 (292)
Q Consensus 156 ~vI~~d~~w-np~ 167 (292)
.||+.-+|+ +|.
T Consensus 827 ~viI~kLPF~~p~ 839 (928)
T PRK08074 827 CLVIVRLPFAPPD 839 (928)
T ss_pred EEEEecCCCCCCC
Confidence 899988887 443
No 144
>KOG0951|consensus
Probab=95.47 E-value=0.046 Score=58.32 Aligned_cols=71 Identities=31% Similarity=0.452 Sum_probs=56.3
Q ss_pred ceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE-----eCCC---C---ChhhHHHHhHhh
Q psy15261 108 VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF-----VDHD---W---SPMKDLQAMDRA 176 (292)
Q Consensus 108 ~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~-----~d~~---w---np~~~~Qa~gR~ 176 (292)
+.+..-|.+++..+|...-+-|. ++.++|++ +|...+.|+||+ |++||+ |+|. | .|....|+.||+
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~-~g~iqvlv-statlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFA-DGHIQVLV-STATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHh-cCceeEEE-eehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 45777889999999988888887 67788765 889999999998 455665 4443 4 577889999999
Q ss_pred hhcCC
Q psy15261 177 HRIGQ 181 (292)
Q Consensus 177 ~RiGQ 181 (292)
+|.+-
T Consensus 685 grp~~ 689 (1674)
T KOG0951|consen 685 GRPQY 689 (1674)
T ss_pred CCCcc
Confidence 99873
No 145
>KOG1513|consensus
Probab=95.44 E-value=0.028 Score=57.33 Aligned_cols=89 Identities=19% Similarity=0.283 Sum_probs=66.1
Q ss_pred HHHHhcCCCCeeEEEecccccccccCCCCCCEE--------EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV--------IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 125 ~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v--------I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
-.++|.. +.-.|-|+| .+++-||.|+.-.+| |.+++||+...-+|-+||.||-.|-..-....||++---
T Consensus 849 EKqrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAG 926 (1300)
T KOG1513|consen 849 EKQRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAG 926 (1300)
T ss_pred HHhhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhcc
Confidence 3568884 444566666 788889999865443 458999999999999999999999877666668887777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15261 197 EEKIMNLQKFKLLTANTVI 215 (292)
Q Consensus 197 Ee~i~~~~~~K~~~~~~vv 215 (292)
|.+......++.....++-
T Consensus 927 ErRFAS~VAKRLESLGALT 945 (1300)
T KOG1513|consen 927 ERRFASIVAKRLESLGALT 945 (1300)
T ss_pred chHHHHHHHHHHHhhcccc
Confidence 7777766665555444443
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.96 E-value=0.21 Score=51.50 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=52.1
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCC---CCeeEEEecccccccccCCCC--CC
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD---PTIDVLLLTTQVGGLGLNLTG--AD 155 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~---~~~~vlLlst~~~~~GlnL~~--a~ 155 (292)
.+++||..+-.+++.+...|... .+.. +...|. ..|.+++++|... +...||+ .+....+|+|+.+ +.
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~--~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRD--LRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-GLQSFAEGLDLPGDYLT 607 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHh--cCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-EeccccccccCCCCceE
Confidence 34677777777788888877421 1233 445664 2467888777642 2233544 5588899999976 78
Q ss_pred EEEEeCCCCC
Q psy15261 156 TVIFVDHDWS 165 (292)
Q Consensus 156 ~vI~~d~~wn 165 (292)
.||+.-+|+-
T Consensus 608 ~vII~kLPF~ 617 (697)
T PRK11747 608 QVIITKIPFA 617 (697)
T ss_pred EEEEEcCCCC
Confidence 9999988873
No 147
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.85 E-value=0.28 Score=50.56 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=54.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCC----CCceEEEEECCCCHHHHHHHHHHhcCC---CCeeEEEecc--ccccccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEM----PGVTYLRLDGSVVSTARHAIVTKFNSD---PTIDVLLLTT--QVGGLGL 149 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~----~~~~~~~i~G~~~~~~R~~~v~~F~~~---~~~~vlLlst--~~~~~Gl 149 (292)
.+..+|||..+-..++.+...+..... .....+.+.+... .++..++++|... +...||+ +. ...++|+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~gavL~-av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGAVLL-SVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCceEEE-EecCCcccCcc
Confidence 356778877777777777666532110 0112334444322 5788999999742 2223444 44 5688999
Q ss_pred CCCC--CCEEEEeCCCC-Ch
Q psy15261 150 NLTG--ADTVIFVDHDW-SP 166 (292)
Q Consensus 150 nL~~--a~~vI~~d~~w-np 166 (292)
|+.+ +..||++..|+ +|
T Consensus 599 Df~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred ccCCCCCcEEEEEccCCCCC
Confidence 9976 89999999887 44
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=94.75 E-value=0.22 Score=52.08 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC-C
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV-V 118 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~-~ 118 (292)
..|..++.+-+.++. ..|+.|||-|.+....+.|...| ...|+++-+++..- .
T Consensus 422 ~~K~~Ai~~ei~~~~-----------------------~~GrPVLIgT~SVe~SE~ls~~L---~~~gi~h~vLNAk~~~ 475 (939)
T PRK12902 422 IAKWRAVANETAEMH-----------------------KQGRPVLVGTTSVEKSELLSALL---QEQGIPHNLLNAKPEN 475 (939)
T ss_pred HHHHHHHHHHHHHHH-----------------------hCCCCEEEeeCCHHHHHHHHHHH---HHcCCchheeeCCCcc
Confidence 468888888887774 68999999999999999999999 55689999999862 2
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNL 151 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL 151 (292)
..+=..++.+=- ...-+-++|..+|+|-|+
T Consensus 476 ~~~EA~IIa~AG---~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 476 VEREAEIVAQAG---RKGAVTIATNMAGRGTDI 505 (939)
T ss_pred hHhHHHHHHhcC---CCCcEEEeccCCCCCcCE
Confidence 222234555432 223345688899999654
No 149
>KOG0949|consensus
Probab=94.72 E-value=0.061 Score=56.15 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=55.6
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC-CCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH-DWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~-~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+-|.+++...|.-+---|+ .+...|++ +|...+.|+|++.-..|+..|. ..||..|.|+.||++|-|=..--+|
T Consensus 967 ~HHaglNr~yR~~VEvLFR-~g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV 1041 (1330)
T KOG0949|consen 967 VHHAGLNRKYRSLVEVLFR-QGHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNV 1041 (1330)
T ss_pred ccccccchHHHHHHHHHhh-cCceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccce
Confidence 3577888888887767787 56676655 7899999999985444444544 4799999999999999996543333
No 150
>KOG0924|consensus
Probab=94.40 E-value=0.11 Score=52.35 Aligned_cols=120 Identities=21% Similarity=0.345 Sum_probs=85.6
Q ss_pred CCCeEEEEeccHH----HHHHHHHHHhcc-CCC--CceEEEEECCCCHHHHHHHHHHhc-CCCCeeEEEecccccccccC
Q psy15261 79 TQHRALIFCQLRA----MLDIVENDLFKC-EMP--GVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVLLLTTQVGGLGLN 150 (292)
Q Consensus 79 ~~~KvlIFsq~~~----~l~~l~~~L~~~-~~~--~~~~~~i~G~~~~~~R~~~v~~F~-~~~~~~vlLlst~~~~~Gln 150 (292)
...-+|||..-.+ +.+.|...|.+. ..+ ++.+..|...+|..-..++ |. ..++++-+|++|.++-+.|+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLT 638 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLT 638 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhcee
Confidence 3456888886544 456666666432 223 7889999999998765544 55 35678888889999999999
Q ss_pred CCCCCEEEEeCC----CCC-----------hhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHH
Q psy15261 151 LTGADTVIFVDH----DWS-----------PMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201 (292)
Q Consensus 151 L~~a~~vI~~d~----~wn-----------p~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~ 201 (292)
+.+..+||=... .+| |..-.+|.-|++|.|.+.+-.+||++++.+....++
T Consensus 639 i~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 639 IPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 999988874322 133 333345666777778888999999999988776665
No 151
>KOG0923|consensus
Probab=94.35 E-value=0.22 Score=50.22 Aligned_cols=109 Identities=22% Similarity=0.318 Sum_probs=73.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc------cCCCCceEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEecccccccccCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK------CEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNL 151 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~------~~~~~~~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLlst~~~~~GlnL 151 (292)
+..-+|||-...+.++.....|.. .....+-++.|+...|......+ |.. .++++-++++|..+-+.|++
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceee
Confidence 456788998777665555544422 12346778999999998776555 554 44567778899999999999
Q ss_pred CCCCEEEEeCCCC------Chh--------------hHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 152 TGADTVIFVDHDW------SPM--------------KDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 152 ~~a~~vI~~d~~w------np~--------------~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
.+..+|| ||.+ ||. .-.||.||+|| +.+-.+|||++.-+
T Consensus 549 dgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGR---tgPGKCfRLYt~~a 607 (902)
T KOG0923|consen 549 DGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGR---TGPGKCFRLYTAWA 607 (902)
T ss_pred cCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCC---CCCCceEEeechhh
Confidence 8887775 4433 332 23465555555 55677899998544
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.22 E-value=0.55 Score=49.30 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=52.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC--CCE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG--ADT 156 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~--a~~ 156 (292)
.+.+++|+..+..++..+...|.. ..++. ...|... .|.+++++|+..++ .| |+.+....+|+|+++ +..
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~---~~~~~-l~Qg~~~--~~~~l~~~F~~~~~-~v-LlG~~sFwEGVD~p~~~~~~ 717 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQ---WQVSH-LAQEKNG--TAYNIKKRFDRGEQ-QI-LLGLGSFWEGVDFVQADRMI 717 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhh---cCCcE-EEeCCCc--cHHHHHHHHHcCCC-eE-EEecchhhCCCCCCCCCeEE
Confidence 456788877778888888888832 23443 5566433 35678999986433 35 456688999999963 556
Q ss_pred EEEeCCCC
Q psy15261 157 VIFVDHDW 164 (292)
Q Consensus 157 vI~~d~~w 164 (292)
||+.-+|+
T Consensus 718 viI~kLPF 725 (820)
T PRK07246 718 EVITRLPF 725 (820)
T ss_pred EEEecCCC
Confidence 67777664
No 153
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.18 E-value=0.39 Score=39.25 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=36.5
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC--CCEEEEeCCCC
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG--ADTVIFVDHDW 164 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~--a~~vI~~d~~w 164 (292)
.+.+.|. ...+...+++.|.......| |+++...++|+|+++ +..||+.-.|+
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~~~~~i-L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEACENAI-LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHcCCCEE-EEEccceecceecCCCCeeEEEEEecCC
Confidence 3444453 34467889999986432234 555555999999976 67888988776
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.30 E-value=0.93 Score=46.99 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC--CC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG--AD 155 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~--a~ 155 (292)
..|+++-|||....+.++++++.. .....+..+++..+..+ ++. -.+.+|++ -|.+...|+++.. -+
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~---~~~~~Vl~l~s~~~~~d----v~~---W~~~~Vvi-YT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCA---RFTKKVLVLNSTDKLED----VES---WKKYDVVI-YTPVITVGLSFEEKHFD 348 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHH---hcCCeEEEEcCCCCccc----ccc---ccceeEEE-EeceEEEEeccchhhce
Confidence 589999999999999999999983 34778888888766542 233 34667766 4466677888743 55
Q ss_pred EEEEeCCC--CChhh--HHHHhHhhhhcCCcceEEEE
Q psy15261 156 TVIFVDHD--WSPMK--DLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 156 ~vI~~d~~--wnp~~--~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.|+.|=.+ ..|.. ..|.+||+..+.. +++.||
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 56666333 33443 5899999988875 445555
No 155
>KOG0926|consensus
Probab=93.01 E-value=0.057 Score=55.29 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=54.2
Q ss_pred eEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEecccccccccCCCCCCEEEEe-----------------CCCC-ChhhH
Q psy15261 109 TYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADTVIFV-----------------DHDW-SPMKD 169 (292)
Q Consensus 109 ~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLlst~~~~~GlnL~~a~~vI~~-----------------d~~w-np~~~ 169 (292)
-++.++.=.+..+..++ |.. ..+++..+++|.++-+.|++++..+||=. +-.| +-+.-
T Consensus 606 yvLPLYSLLs~~~Q~RV---F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASa 682 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRV---FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASA 682 (1172)
T ss_pred EEeehhhhcCHHHhhhh---ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeecccc
Confidence 34555555666554444 543 34678889999999999999999999843 2234 33344
Q ss_pred HHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 170 LQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 170 ~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
.||.||+||+| +-|+|||++.
T Consensus 683 dQRAGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 683 DQRAGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred chhccccCCCC---CCceeehhhh
Confidence 58777777665 5789999864
No 156
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.01 E-value=0.31 Score=50.55 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=85.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|..++.+-+.++. ..|.+|||-+.+...-+.+.+.| ...|++..+++....
T Consensus 412 ~~K~~Aiv~~I~~~~-----------------------~~gqPvLvgT~sie~SE~ls~~L---~~~~i~h~VLNAk~h- 464 (822)
T COG0653 412 EEKFKAIVEDIKERH-----------------------EKGQPVLVGTVSIEKSELLSKLL---RKAGIPHNVLNAKNH- 464 (822)
T ss_pred HHHHHHHHHHHHHHH-----------------------hcCCCEEEcCcceecchhHHHHH---HhcCCCceeeccccH-
Confidence 458888888888885 68999999999999999999999 455888888888765
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCC-CC----------EEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG-AD----------TVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~-a~----------~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
.|+.-+-.+. +....+-++|..+|+|-++.- .+ +||=-+..-+...+.|-=||++|.|-..
T Consensus 465 -~~EA~Iia~A--G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG 536 (822)
T COG0653 465 -AREAEIIAQA--GQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPG 536 (822)
T ss_pred -HHHHHHHhhc--CCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcc
Confidence 3444444443 222234558899999999843 33 5666777777777889999999999543
No 157
>KOG0947|consensus
Probab=92.76 E-value=0.46 Score=49.79 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=65.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCC------------------------------------ceEEEEECCCCHHHHH
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPG------------------------------------VTYLRLDGSVVSTARH 123 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~------------------------------------~~~~~i~G~~~~~~R~ 123 (292)
--.+||||=++.-+|...++|....... -.+.+-||+.=+--++
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 3468999988877777777763322110 0123334444332222
Q ss_pred HHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC---------CCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 124 AIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH---------DWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 124 ~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~---------~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
-+---|. .+=+.| |.+|...+.|+|++ |.+|||-.. ..+|..|.|..||++|-|-..+-+|.
T Consensus 647 ~VE~LFq-rGlVKV-LFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVi 717 (1248)
T KOG0947|consen 647 VVELLFQ-RGLVKV-LFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVI 717 (1248)
T ss_pred HHHHHHh-cCceEE-EeehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEE
Confidence 2222344 344555 55889999999997 455665433 34799999999999999976554443
No 158
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.66 E-value=0.66 Score=47.85 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=70.9
Q ss_pred HHHHHHHhccCCCCceEEEEECCCCHHH--HHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC--C----
Q psy15261 94 DIVENDLFKCEMPGVTYLRLDGSVVSTA--RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW--S---- 165 (292)
Q Consensus 94 ~~l~~~L~~~~~~~~~~~~i~G~~~~~~--R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w--n---- 165 (292)
+.+++.|.+ .+|+.++.++++.+...+ -+.++..|.. +..++|| -|...+.|+|+++..-|.+++.+- +
T Consensus 494 erieeeL~~-~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 494 ERIEEELKR-LFPGARIIRIDSDTTRRKGALEDLLDQFAN-GEADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHH-HCCCCcEEEEccccccchhhHHHHHHHHhC-CCCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCc
Confidence 455555543 468999999999987643 4678999994 5666655 668888999999999888876652 2
Q ss_pred ------hhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 166 ------PMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 166 ------p~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
...+.|..||++|-+-...|.|=.+....
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 12456999999999877777665555443
No 159
>KOG0920|consensus
Probab=92.50 E-value=0.58 Score=49.22 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=92.0
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc----CCCCceEEE
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC----EMPGVTYLR 112 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~----~~~~~~~~~ 112 (292)
+...-....+.+++..+.- ......+|||-.....+..+...|... ...++-+..
T Consensus 391 ~~~~id~~Li~~li~~I~~---------------------~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilp 449 (924)
T KOG0920|consen 391 WEPEIDYDLIEDLIEYIDE---------------------REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILP 449 (924)
T ss_pred ccccccHHHHHHHHHhccc---------------------CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEe
Confidence 3344567777777766531 134678999999999888888877421 112477889
Q ss_pred EECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE--------eCCC---------C-ChhhHHHHhH
Q psy15261 113 LDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF--------VDHD---------W-SPMKDLQAMD 174 (292)
Q Consensus 113 i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~--------~d~~---------w-np~~~~Qa~g 174 (292)
+|++++..+.+.+..+. .++++-+|++|..+..+|+..++-+||- ||+. | +.+.-.||.|
T Consensus 450 lHs~~~s~eQ~~VF~~p--p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~G 527 (924)
T KOG0920|consen 450 LHSSIPSEEQQAVFKRP--PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRG 527 (924)
T ss_pred ccccCChHHHHHhcCCC--CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcc
Confidence 99999987776653333 3456778889999999999988777764 3332 2 2223347666
Q ss_pred hhhhcCCcceEEEEEEEeCCCHHH
Q psy15261 175 RAHRIGQKKVVNVYRLITKNTLEE 198 (292)
Q Consensus 175 R~~RiGQ~~~V~Vy~lv~~~TvEe 198 (292)
|+|| -.+-.+|+|++..-.+.
T Consensus 528 RAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 528 RAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred cccC---ccCCeeEEeechhhhhh
Confidence 6655 47788999998755443
No 160
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.27 E-value=0.7 Score=37.78 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=34.3
Q ss_pred EEEECCCCHHHHHHHHHHhcCCCC-eeEEEecccc--cccccCCCC--CCEEEEeCCCC
Q psy15261 111 LRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQV--GGLGLNLTG--ADTVIFVDHDW 164 (292)
Q Consensus 111 ~~i~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~--~~~GlnL~~--a~~vI~~d~~w 164 (292)
+.+.+..+ .+...++++|+.... ...+|+++.. .++|+|+++ +..||++..|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44455433 345789999986322 0123444444 799999976 78899988886
No 161
>KOG0391|consensus
Probab=90.92 E-value=0.11 Score=55.27 Aligned_cols=16 Identities=50% Similarity=0.812 Sum_probs=14.4
Q ss_pred HHHHHhhcCCCcCcCC
Q psy15261 2 LRYLQSVCNHPKLVLG 17 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~ 17 (292)
||.||||||||.||-.
T Consensus 892 lmqLrKvCNHPnLfEp 907 (1958)
T KOG0391|consen 892 LMQLRKVCNHPNLFEP 907 (1958)
T ss_pred HHHHHHHcCCCCcCCC
Confidence 7999999999999863
No 162
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.96 E-value=1.9 Score=44.29 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=59.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
..|.+++|.++....+.-....+.+. ...++++..++|+++..+|..++.... .+.+.|++.+.......+.+.....
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~-~g~~~IvVgT~~ll~~~v~~~~l~l 386 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA-SGEADIVIGTHALIQDDVEFHNLGL 386 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh-CCCCCEEEchHHHhcccchhcccce
Confidence 46789999999887765544444221 334789999999999999999999887 4567788877655555666666666
Q ss_pred EEEeCC
Q psy15261 157 VIFVDH 162 (292)
Q Consensus 157 vI~~d~ 162 (292)
||+=+-
T Consensus 387 vVIDE~ 392 (681)
T PRK10917 387 VIIDEQ 392 (681)
T ss_pred EEEech
Confidence 665433
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.01 E-value=2.9 Score=41.50 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=68.2
Q ss_pred cccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC
Q psy15261 36 DIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115 (292)
Q Consensus 36 ~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G 115 (292)
-...|||-.....++... +..|.++||.+.......-+.+.|.. ..+..+..+||
T Consensus 4 g~TGsGKT~v~l~~i~~~-----------------------l~~g~~vLvlvP~i~L~~Q~~~~l~~--~f~~~v~vlhs 58 (505)
T TIGR00595 4 GVTGSGKTEVYLQAIEKV-----------------------LALGKSVLVLVPEIALTPQMIQRFKY--RFGSQVAVLHS 58 (505)
T ss_pred CCCCCCHHHHHHHHHHHH-----------------------HHcCCeEEEEeCcHHHHHHHHHHHHH--HhCCcEEEEEC
Confidence 345789999888887765 25688999999998877766666633 23567889999
Q ss_pred CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeC
Q psy15261 116 SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 161 (292)
Q Consensus 116 ~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d 161 (292)
.++..+|.+...+-.. +...|++.+..+. =+.+.....||+-|
T Consensus 59 ~~~~~er~~~~~~~~~-g~~~IVVGTrsal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 59 GLSDSEKLQAWRKVKN-GEILVVIGTRSAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred CCCHHHHHHHHHHHHc-CCCCEEECChHHH--cCcccCCCEEEEEC
Confidence 9999998887776653 4456666553332 23455666666655
No 164
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.60 E-value=2.5 Score=44.88 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=59.7
Q ss_pred CeEEEEecc---HHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec---ccccccccCCCC-
Q psy15261 81 HRALIFCQL---RAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG- 153 (292)
Q Consensus 81 ~KvlIFsq~---~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls---t~~~~~GlnL~~- 153 (292)
.=.|||.+- .+.++.|..+| ...|+++..++.. ..+.++.|. .+.+++|+.. ..+.-+||||+.
T Consensus 336 ~GgLIfV~~d~G~e~aeel~e~L---r~~Gi~a~~~~a~-----~~~~le~F~-~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 336 DGGLIFVPIDYGREKAEELAEYL---RSHGINAELIHAE-----KEEALEDFE-EGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred CCeEEEEEcHHhHHHHHHHHHHH---HhcCceEEEeecc-----chhhhhhhc-cCceeEEEEecccccceeecCCchhh
Confidence 346999998 88899999999 5668998888863 257899999 5778888764 344669999964
Q ss_pred CCEEEEeCCC
Q psy15261 154 ADTVIFVDHD 163 (292)
Q Consensus 154 a~~vI~~d~~ 163 (292)
..++||+..|
T Consensus 407 irYaIF~GvP 416 (1187)
T COG1110 407 IRYAVFYGVP 416 (1187)
T ss_pred eeEEEEecCC
Confidence 9999999988
No 165
>PRK05580 primosome assembly protein PriA; Validated
Probab=87.61 E-value=3.8 Score=42.16 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=69.9
Q ss_pred ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEE
Q psy15261 35 SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114 (292)
Q Consensus 35 ~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~ 114 (292)
.....|+|-.....++... +..|.++||.+.....+.-+.+.|.+. .+..+..+|
T Consensus 168 ~~~TGSGKT~v~l~~i~~~-----------------------l~~g~~vLvLvPt~~L~~Q~~~~l~~~--fg~~v~~~~ 222 (679)
T PRK05580 168 DGVTGSGKTEVYLQAIAEV-----------------------LAQGKQALVLVPEIALTPQMLARFRAR--FGAPVAVLH 222 (679)
T ss_pred ECCCCChHHHHHHHHHHHH-----------------------HHcCCeEEEEeCcHHHHHHHHHHHHHH--hCCCEEEEE
Confidence 3455688888887776664 245789999999988877777766431 267899999
Q ss_pred CCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC
Q psy15261 115 GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 162 (292)
Q Consensus 115 G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~ 162 (292)
|+++..+|.+...+... +.++|++.+..+. =+.+.....||+-|-
T Consensus 223 s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal--~~p~~~l~liVvDEe 267 (679)
T PRK05580 223 SGLSDGERLDEWRKAKR-GEAKVVIGARSAL--FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCCCHHHHHHHHHHHHc-CCCCEEEeccHHh--cccccCCCEEEEECC
Confidence 99999998888777763 4466777554332 244566666766553
No 166
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=87.26 E-value=5.6 Score=40.61 Aligned_cols=86 Identities=7% Similarity=0.031 Sum_probs=54.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCC--CCeeEEEecccccccccCC----
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD--PTIDVLLLTTQVGGLGLNL---- 151 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~--~~~~vlLlst~~~~~GlnL---- 151 (292)
..|+-.+.|+.+..+ ..+...|.. .. .+ .+.+.|..+ .|..++++|... .+..-+|+.|....+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~-~~~~~~l~~-~l-~~-~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~ 542 (636)
T TIGR03117 469 AQGGTLVLTTAFSHI-SAIGQLVEL-GI-PA-EIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKP 542 (636)
T ss_pred cCCCEEEEechHHHH-HHHHHHHHh-hc-CC-CEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCcc
Confidence 356666777776654 445545522 11 22 355667543 456799999864 1223356678999999999
Q ss_pred ----C--CCCEEEEeCCCCChhhH
Q psy15261 152 ----T--GADTVIFVDHDWSPMKD 169 (292)
Q Consensus 152 ----~--~a~~vI~~d~~wnp~~~ 169 (292)
. ....||+.-+|+-|...
T Consensus 543 ~~p~~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 543 VSPDKDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred CCCCCCCcccEEEEEeCCCCcCCh
Confidence 2 38899999999876433
No 167
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=87.19 E-value=3.5 Score=41.99 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
..|.+++|-+.....+.-+.+.+.+. ...++++..++|+++..+|..+..... .+.+.+++.+.......+.+.....
T Consensus 282 ~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~-~g~~~IiVgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 282 EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA-SGQIHLVVGTHALIQEKVEFKRLAL 360 (630)
T ss_pred HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh-CCCCCEEEecHHHHhccccccccce
Confidence 35778999999877766555444221 334799999999999999988888887 4566787777665555566666666
Q ss_pred EEEeCC
Q psy15261 157 VIFVDH 162 (292)
Q Consensus 157 vI~~d~ 162 (292)
||+=|-
T Consensus 361 vVIDEa 366 (630)
T TIGR00643 361 VIIDEQ 366 (630)
T ss_pred EEEech
Confidence 665443
No 168
>KOG0388|consensus
Probab=85.66 E-value=0.26 Score=50.13 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.3
Q ss_pred CHHHHHhhcCCCcCcCCC
Q psy15261 1 SLRYLQSVCNHPKLVLGP 18 (292)
Q Consensus 1 al~~Lrk~c~hP~lv~~~ 18 (292)
+++.|||+||||.|+...
T Consensus 840 ~vmQlrKVCNHPdLFer~ 857 (1185)
T KOG0388|consen 840 LVMQLRKVCNHPDLFERL 857 (1185)
T ss_pred HHHHHHHhcCChHHHhhc
Confidence 478999999999998644
No 169
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=85.01 E-value=1.7 Score=44.96 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=67.4
Q ss_pred CCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceE
Q psy15261 31 GLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTY 110 (292)
Q Consensus 31 ~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~ 110 (292)
...+.-+..|+|.+...+++.+. +..|+.+||...-.....-+...|. ...|.++
T Consensus 219 ~~Ll~GvTGSGKTEvYl~~i~~~-----------------------L~~GkqvLvLVPEI~Ltpq~~~rf~--~rFg~~v 273 (730)
T COG1198 219 PFLLDGVTGSGKTEVYLEAIAKV-----------------------LAQGKQVLVLVPEIALTPQLLARFK--ARFGAKV 273 (730)
T ss_pred ceeEeCCCCCcHHHHHHHHHHHH-----------------------HHcCCEEEEEeccccchHHHHHHHH--HHhCCCh
Confidence 34567788999999999999997 4789999999987665554444442 2236889
Q ss_pred EEEECCCCHHHHHHHHHHhcCCCCeeEEEecc
Q psy15261 111 LRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT 142 (292)
Q Consensus 111 ~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst 142 (292)
..+|+++++.+|.....+.. .+..+|++.+-
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~-~G~~~vVIGtR 304 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRAR-RGEARVVIGTR 304 (730)
T ss_pred hhhcccCChHHHHHHHHHHh-cCCceEEEEec
Confidence 99999999999999999998 46677877553
No 170
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.72 E-value=4.7 Score=41.44 Aligned_cols=78 Identities=13% Similarity=-0.022 Sum_probs=61.8
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.|+|-+...+++..+ +..|+.+||...-......+...|.. .+.+..++.+|+..+
T Consensus 170 GSGKTevyl~~i~~~-----------------------l~~Gk~vLvLvPEi~lt~q~~~rl~~-~f~~~~v~~lhS~l~ 225 (665)
T PRK14873 170 GEDWARRLAAAAAAT-----------------------LRAGRGALVVVPDQRDVDRLEAALRA-LLGAGDVAVLSAGLG 225 (665)
T ss_pred CCcHHHHHHHHHHHH-----------------------HHcCCeEEEEecchhhHHHHHHHHHH-HcCCCcEEEECCCCC
Confidence 689999999999887 36789999999988887777777743 222367999999999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEec
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLls 141 (292)
+.+|.+...+.. .+..+|+|.+
T Consensus 226 ~~~R~~~w~~~~-~G~~~IViGt 247 (665)
T PRK14873 226 PADRYRRWLAVL-RGQARVVVGT 247 (665)
T ss_pred HHHHHHHHHHHh-CCCCcEEEEc
Confidence 999998888877 4556776654
No 171
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=83.69 E-value=7.9 Score=41.62 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=59.1
Q ss_pred EEEeccHHHHHHHHHHHhccCC--CCceEEEEECCCCHHHHHHHHHH---------------------hcCC---CCeeE
Q psy15261 84 LIFCQLRAMLDIVENDLFKCEM--PGVTYLRLDGSVVSTARHAIVTK---------------------FNSD---PTIDV 137 (292)
Q Consensus 84 lIFsq~~~~l~~l~~~L~~~~~--~~~~~~~i~G~~~~~~R~~~v~~---------------------F~~~---~~~~v 137 (292)
|.+++-...++.-...+..... ..+.++.+|+..+...|..+=++ +-.. .+..+
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 5566555555544444422122 34679999999876655442211 1111 23557
Q ss_pred EEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 138 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 138 lLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
++++|.+.-.|+|+. .+.+| .|+. ......|+.||+.|-|+..
T Consensus 841 i~v~Tqv~E~g~D~d-fd~~~-~~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 841 IVLATPVEEVGRDHD-YDWAI-ADPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred EEEEeeeEEEEeccc-CCeee-eccC-cHHHHHHHhhcccccccCC
Confidence 888999999999974 44433 3332 3445789999999999863
No 172
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=81.22 E-value=10 Score=40.46 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=61.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
..+.+++|.+.....+.-....+.+. ...++++..++|..+..++.+++..... +.+.+++.++......+.+.....
T Consensus 498 ~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVIGTp~ll~~~v~f~~L~l 576 (926)
T TIGR00580 498 LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILIGTHKLLQKDVKFKDLGL 576 (926)
T ss_pred HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEEchHHHhhCCCCcccCCE
Confidence 35689999999988776665554321 2336788899999999899899988884 567888888766666677777777
Q ss_pred EEEeCC
Q psy15261 157 VIFVDH 162 (292)
Q Consensus 157 vI~~d~ 162 (292)
+|+=+-
T Consensus 577 lVIDEa 582 (926)
T TIGR00580 577 LIIDEE 582 (926)
T ss_pred EEeecc
Confidence 666443
No 173
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=80.84 E-value=9.3 Score=31.07 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=55.6
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeC
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 161 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d 161 (292)
.|=+++|+-.+...+...+... --++.+..-.|....-.-.++++.|..++.++++++. +|
T Consensus 3 ~valisQSG~~~~~~~~~~~~~-g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E 63 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDR-GIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LE 63 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHT-T-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES
T ss_pred CEEEEECCHHHHHHHHHHHHHc-CCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------cc
Confidence 4678999999988887777442 2466677777776655667899999999999887754 34
Q ss_pred CCCChhhHHHHhHhhhhcCCcceEEEEEEE
Q psy15261 162 HDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191 (292)
Q Consensus 162 ~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv 191 (292)
.--+|..+..+..|+.|. |+|-+|+-=
T Consensus 64 ~~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 64 GIGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp --S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 444788888888777654 888887543
No 174
>PRK13766 Hef nuclease; Provisional
Probab=80.75 E-value=75 Score=33.07 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=72.1
Q ss_pred cCCCcCcCCCChh-hHHHhhc----CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q psy15261 9 CNHPKLVLGPSHA-QYEALVS----RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRA 83 (292)
Q Consensus 9 c~hP~lv~~~~~~-~~~~~~~----~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kv 83 (292)
..||.+-.....+ .|+.... ..+..+..-..+||-..-.-++.... ...+.++
T Consensus 4 ~~~~~~~~~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l----------------------~~~~~~v 61 (773)
T PRK13766 4 IEHPLIKPNTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERL----------------------HKKGGKV 61 (773)
T ss_pred ccCCccCcCcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHH----------------------HhCCCeE
Confidence 4688875544322 2332211 22444556677889863332322220 0246799
Q ss_pred EEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCCCCEE
Q psy15261 84 LIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTGADTV 157 (292)
Q Consensus 84 lIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~a~~v 157 (292)
||.+.....+.-....+... ..++..+..++|..+..+|..+.. +..|+++++.... .-+++...+.+
T Consensus 62 Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~------~~~iiv~T~~~l~~~l~~~~~~~~~~~li 135 (773)
T PRK13766 62 LILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE------KAKVIVATPQVIENDLIAGRISLEDVSLL 135 (773)
T ss_pred EEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh------CCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 99999877664444443221 334457888999999887765443 2357777765442 23455667777
Q ss_pred EEeCCC
Q psy15261 158 IFVDHD 163 (292)
Q Consensus 158 I~~d~~ 163 (292)
|+-+.+
T Consensus 136 VvDEaH 141 (773)
T PRK13766 136 IFDEAH 141 (773)
T ss_pred EEECCc
Confidence 776655
No 175
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=79.65 E-value=3.7 Score=43.93 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=55.3
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC---------CCChhhHHHHhHhhhhcCCc
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH---------DWSPMKDLQAMDRAHRIGQK 182 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~---------~wnp~~~~Qa~gR~~RiGQ~ 182 (292)
.-|+++=+.-|..+-.-|.. +=+.| ++.|.+.+.|+|++ |.+|++... +-+|..|.|--||++|-|+.
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~-GLvkv-vFaTeT~s~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD 525 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQE-GLVKV-VFATETFAIGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD 525 (1041)
T ss_pred hhccccchHHHHHHHHHHhc-cceeE-EeehhhhhhhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhhhcccccc
Confidence 45677777777777777874 44555 55789999999997 455555533 23789999999999999998
Q ss_pred ceEEEEEE
Q psy15261 183 KVVNVYRL 190 (292)
Q Consensus 183 ~~V~Vy~l 190 (292)
...+|...
T Consensus 526 ~~G~vI~~ 533 (1041)
T COG4581 526 VLGTVIVI 533 (1041)
T ss_pred ccceEEEe
Confidence 66555444
No 176
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=76.72 E-value=27 Score=29.25 Aligned_cols=62 Identities=16% Similarity=0.322 Sum_probs=48.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEE-EEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYL-RLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~-~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..+.++-++-.....++.+...|.. ..|++.++ ..+|..+..+.+++++.-+. .+.+++++.
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~-~yP~l~ivg~~~g~f~~~~~~~i~~~I~~-~~pdiv~vg 108 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRR-RYPGLRIVGYHHGYFDEEEEEAIINRINA-SGPDIVFVG 108 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHH-HCCCeEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEE
Confidence 4568999999999999999999865 67888887 45676777888899998884 455666654
No 177
>PRK10689 transcription-repair coupling factor; Provisional
Probab=76.32 E-value=18 Score=39.65 Aligned_cols=82 Identities=10% Similarity=0.048 Sum_probs=58.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhc-cCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFK-CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~-~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
..+.+++|.+.....+.-+...+.+ ....++.+..++|..+.+++..++.... .+.+.|++.++......+.+.....
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~-~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA-EGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH-hCCCCEEEECHHHHhCCCCHhhCCE
Confidence 3578999999998876655555532 1223577888999999999988888877 4567888888766655566666666
Q ss_pred EEEe
Q psy15261 157 VIFV 160 (292)
Q Consensus 157 vI~~ 160 (292)
+|+=
T Consensus 726 LVID 729 (1147)
T PRK10689 726 LIVD 729 (1147)
T ss_pred EEEe
Confidence 6553
No 178
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=73.45 E-value=37 Score=30.21 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCC--CeeEEEecccccccccCCCCCCEEEEeCCCCC
Q psy15261 88 QLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP--TIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 165 (292)
Q Consensus 88 q~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~--~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wn 165 (292)
.|.+..+.|...+ .. ++.+..++++.+... -.|...+ +..++++.....++|++|.+-....+.-.+-+
T Consensus 95 s~~ei~~~l~~~~---~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~ 165 (239)
T PF10593_consen 95 SWEEIKPELPKAI---SD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQ 165 (239)
T ss_pred CHHHHHHHHHHHH---hc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCch
Confidence 5666777777777 33 689999997655432 3444332 24788889999999999999887777766667
Q ss_pred hhhHHHHhHhhhhcCCcce-EEEEEEEeCCCHHHHHHHH
Q psy15261 166 PMKDLQAMDRAHRIGQKKV-VNVYRLITKNTLEEKIMNL 203 (292)
Q Consensus 166 p~~~~Qa~gR~~RiGQ~~~-V~Vy~lv~~~TvEe~i~~~ 203 (292)
...+.| +||.. |=++. -.+.|+.....+.+.....
T Consensus 166 ~DTL~Q-mgRwF--GYR~gY~dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 166 YDTLMQ-MGRWF--GYRPGYEDLCRIYMPEELYDWFRHI 201 (239)
T ss_pred HHHHHH-Hhhcc--cCCcccccceEEecCHHHHHHHHHH
Confidence 777777 46653 44332 3344445555444444333
No 179
>KOG0948|consensus
Probab=73.19 E-value=6.4 Score=40.71 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCC------------------------------------ceEEEEECCCCHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPG------------------------------------VTYLRLDGSVVSTAR 122 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~------------------------------------~~~~~i~G~~~~~~R 122 (292)
....|+|||-++..++.++-.+.+..+.. -.+..-|++.=+--+
T Consensus 382 ~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlK 461 (1041)
T KOG0948|consen 382 NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILK 461 (1041)
T ss_pred cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHH
Confidence 46789999988887777776553322110 012223444433333
Q ss_pred HHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCC-C-------C-ChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 123 HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH-D-------W-SPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 123 ~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~-~-------w-np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
+.+---|+ .+=++| |.+|...+.|||++. .+|+|-.. - | +...|+|.-||+||-|-...-.|. ++..
T Consensus 462 E~IEILFq-EGLvKv-LFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivI-lmiD 537 (1041)
T KOG0948|consen 462 EVIEILFQ-EGLVKV-LFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVI-LMID 537 (1041)
T ss_pred HHHHHHHh-ccHHHH-HHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEE-EEec
Confidence 33333455 344455 457899999999984 55555322 1 3 567889999999999976444333 3334
Q ss_pred CCHHHH
Q psy15261 194 NTLEEK 199 (292)
Q Consensus 194 ~TvEe~ 199 (292)
..++..
T Consensus 538 ekm~~~ 543 (1041)
T KOG0948|consen 538 EKMEPQ 543 (1041)
T ss_pred CcCCHH
Confidence 444443
No 180
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=72.49 E-value=18 Score=29.19 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHH
Q psy15261 43 LPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTAR 122 (292)
Q Consensus 43 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R 122 (292)
...+.+|+.+.. ..|+|++|+|.....+..|.+.|-......+-.-.+.|.-.
T Consensus 15 ~~~~c~L~~k~~-----------------------~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---- 67 (137)
T PF04364_consen 15 ERFACRLAEKAY-----------------------RQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPP---- 67 (137)
T ss_dssp HHHHHHHHHHHH-----------------------HTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SS----
T ss_pred HHHHHHHHHHHH-----------------------HcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCC----
Confidence 588899998873 78999999999999999999999543322222212222211
Q ss_pred HHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC
Q psy15261 123 HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 164 (292)
Q Consensus 123 ~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w 164 (292)
.....|+|...... -....++.+|+++..+
T Consensus 68 ---------~~~~PV~i~~~~~~---~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 68 ---------AARQPVLITWDQEA---NPNNHADVLINLSGEV 97 (137)
T ss_dssp ---------TT--SEEEE-TTS-------S--SEEEE--SS-
T ss_pred ---------CCCCeEEEecCccc---CCCCCCCEEEECCCCC
Confidence 12235666442211 1334589999998887
No 181
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=71.62 E-value=19 Score=27.16 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=36.6
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEE
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlL 139 (292)
..++|+||+. +-.....+.+.|.. .+++|..++=...+..|..+........-+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~---~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA---CGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH---cCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 4589999964 34556677777733 4677877776556667777666655333334443
No 182
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=70.35 E-value=22 Score=26.27 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..++|+||+. +-.....+.+.|.. .++.|..++=...+..|..+.+.-. ...+.++++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~---~~i~y~~idv~~~~~~~~~l~~~~g-~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ---LGVDFGTFDILEDEEVRQGLKEYSN-WPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH---cCCCeEEEEcCCCHHHHHHHHHHhC-CCCCCEEEEC
Confidence 5689999986 45567777788844 4677777775555555555554433 3344444444
No 183
>KOG0925|consensus
Probab=69.60 E-value=4 Score=40.16 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=46.3
Q ss_pred eEEEecccccccccCCCCCCEEEEeCCCC------C-----------hhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHH
Q psy15261 136 DVLLLTTQVGGLGLNLTGADTVIFVDHDW------S-----------PMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198 (292)
Q Consensus 136 ~vlLlst~~~~~GlnL~~a~~vI~~d~~w------n-----------p~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe 198 (292)
+-+++||..+-..+.+.+.-+|| |+.+ | |..-.||.-|.+|.|.+++-.+|+|+++..++.
T Consensus 314 RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 34677999998888877665554 5543 3 455569999999999999999999999765543
No 184
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=68.78 E-value=39 Score=28.62 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=48.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..+.++-++-....+++.+.+.|.. ..|++.++..+|-.++.+.+.++++-+. .+.+++++.
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~-~yP~l~i~g~~g~f~~~~~~~i~~~I~~-s~~dil~Vg 107 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIK-EYPKLKIVGAFGPLEPEERKAALAKIAR-SGAGIVFVG 107 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHH-HCCCCEEEEECCCCChHHHHHHHHHHHH-cCCCEEEEE
Confidence 4567999999999999999999966 5789988878999988777777877774 445666644
No 185
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=67.75 E-value=8.1 Score=32.10 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=38.2
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhc
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFK 102 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~ 102 (292)
+..++|+..+.+|+.++. ..|.|++|.|.....+..|-+.|-.
T Consensus 9 L~~~~~~~~acrL~~Ka~-----------------------~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 9 TSDELLLKSILLLIEKCY-----------------------YSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred eCCChHHHHHHHHHHHHH-----------------------HcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 467889999999999984 7899999999999999999999943
No 186
>PRK10824 glutaredoxin-4; Provisional
Probab=65.82 E-value=26 Score=27.54 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCC-CCeeEEEecccccc
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD-PTIDVLLLTTQVGG 146 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~-~~~~vlLlst~~~~ 146 (292)
..++|+||+. +-.......+.|... ++.|..++=......|.. +.++... .-++|++-...+||
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~---~i~~~~idi~~d~~~~~~-l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC---GERFAYVDILQNPDIRAE-LPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc---CCCceEEEecCCHHHHHH-HHHHhCCCCCCeEEECCEEEcC
Confidence 4589999987 455677777777443 555554444334455554 4444433 33556664555554
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=64.35 E-value=43 Score=23.10 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=37.7
Q ss_pred eEEEEec-cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecc
Q psy15261 82 RALIFCQ-LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT 142 (292)
Q Consensus 82 KvlIFsq-~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst 142 (292)
|+.||+. +-.......++| ...+++|..++-...+..++++.+.......+.++++..
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L---~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALL---DKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred CEEEEeCCCChHHHHHHHHH---HHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 3567764 334567777777 345788888888777777777776666432555666553
No 188
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.63 E-value=91 Score=26.01 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=48.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEE-EECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLR-LDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~-i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..+.|+-++-.....++.+.+.|.+ ..|++.++- .+|.....+...+++..+. .+.+++++.
T Consensus 44 ~~~~~v~llG~~~~~~~~~~~~l~~-~yp~l~i~g~~~g~~~~~~~~~i~~~I~~-~~pdiv~vg 106 (171)
T cd06533 44 QKGLRVFLLGAKPEVLEKAAERLRA-RYPGLKIVGYHHGYFGPEEEEEIIERINA-SGADILFVG 106 (171)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHH-HCCCcEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEE
Confidence 4578999999999999999888866 678999877 6888887777778888874 445666654
No 189
>KOG2340|consensus
Probab=62.25 E-value=29 Score=34.69 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccc-cccccCCCCCCEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV-GGLGLNLTGADTVI 158 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~-~~~GlnL~~a~~vI 158 (292)
..-+|||...=-..-.+..++ +...+.++.++.-++..+-.++-+-|.. +...|||.+-++ .=+-..+.+...||
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~---K~e~i~F~~i~EYssk~~vsRAR~lF~q-gr~~vlLyTER~hffrR~~ikGVk~vV 627 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYM---KKEEISFVMINEYSSKSKVSRARELFFQ-GRKSVLLYTERAHFFRRYHIKGVKNVV 627 (698)
T ss_pred cCceEEEecchhhHHHHHHHh---hhhhcchHHHhhhhhHhhhhHHHHHHHh-cCceEEEEehhhhhhhhheecceeeEE
Confidence 445688886655555677788 5557888888887777777777777874 566788877554 22445678899999
Q ss_pred EeCCCCChhhHHHHh---HhhhhcCCc--ceEEEEEEEeC
Q psy15261 159 FVDHDWSPMKDLQAM---DRAHRIGQK--KVVNVYRLITK 193 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~---gR~~RiGQ~--~~V~Vy~lv~~ 193 (292)
+|.||-||.-|.--+ +|.--.|.+ ..-.|-.|+++
T Consensus 628 fYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 628 FYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred EecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 999999998776433 344444432 22334444443
No 190
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=62.02 E-value=85 Score=25.46 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=55.2
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..++++..+.+|+.+.. ..|+|++|+|.....+..|-+.|-..... .++. ||-.
T Consensus 10 ~~~~~~~~~c~L~~ka~-----------------------~~g~rv~I~~~d~~~a~~lD~~LW~~~~~--sFlP-H~~~ 63 (142)
T PRK05728 10 TLSALEALLCELAEKAL-----------------------RAGWRVLVQCEDEEQAEALDEALWTFRDE--SFLP-HGLA 63 (142)
T ss_pred CchhHHHHHHHHHHHHH-----------------------HCCCEEEEEcCCHHHHHHHHHHhcCCCCC--cCCC-CCcC
Confidence 34568899999999873 78999999999999999999999543211 1111 2211
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 164 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w 164 (292)
... ......|+|.. ...-+...++.+|+++..+
T Consensus 64 ~~~----------~~~~~PV~l~~----~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 64 GEG----------PAAGQPVLLTW----PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred CCC----------CCCCCCEEEEc----CCCCCCCCCcEEEECCCCC
Confidence 100 01234566631 1123556678888888764
No 191
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.01 E-value=64 Score=31.51 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccccc-------CCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL-------NLT 152 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl-------nL~ 152 (292)
+..+||.++....+.-....| ...++.+..++|..+..++..+..... .+.++++++++....... .+.
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l---~~~gi~~~~l~~~~~~~~~~~i~~~~~-~~~~~il~~TPe~l~~~~~~~~~l~~~~ 126 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQL---KASGIPATFLNSSQSKEQQKNVLTDLK-DGKIKLLYVTPEKCSASNRLLQTLEERK 126 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHH---HHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEECHHHHcCchhHHHHHHhcC
Confidence 456899999888766555556 345889999999999888888888775 456788888876543322 334
Q ss_pred CCCEEEEeCCC
Q psy15261 153 GADTVIFVDHD 163 (292)
Q Consensus 153 ~a~~vI~~d~~ 163 (292)
....+|+=|-+
T Consensus 127 ~i~~iViDEaH 137 (470)
T TIGR00614 127 GITLIAVDEAH 137 (470)
T ss_pred CcCEEEEeCCc
Confidence 55666664433
No 192
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=52.34 E-value=76 Score=33.16 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccccc---------
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL--------- 149 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl--------- 149 (292)
++-++|+.+..++.+.-+...|......++.+..++|.++..+|..+.+ ++.+++.+++..-.++
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~------~~~IivtTPd~L~~~~L~~~~~~~~ 153 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE------HARYVLTNPDMLHRGILPSHARWAR 153 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc------CCCEEEEChHHHHHhhccchhHHHH
Confidence 3568999999998877666666443445788999999999877744322 2467777775543332
Q ss_pred CCCCCCEEEEeCCC
Q psy15261 150 NLTGADTVIFVDHD 163 (292)
Q Consensus 150 nL~~a~~vI~~d~~ 163 (292)
.|....+||+=|.+
T Consensus 154 ~l~~l~~vViDEah 167 (742)
T TIGR03817 154 FLRRLRYVVIDECH 167 (742)
T ss_pred HHhcCCEEEEeChh
Confidence 14566777775544
No 193
>KOG0347|consensus
Probab=50.87 E-value=47 Score=33.48 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=46.1
Q ss_pred CCCCe--EEEEeccHHHHHHHHHHHhc-cCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecc
Q psy15261 78 LTQHR--ALIFCQLRAMLDIVENDLFK-CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT 142 (292)
Q Consensus 78 ~~~~K--vlIFsq~~~~l~~l~~~L~~-~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst 142 (292)
+..-| .|||+..+..+.-+.+.|.. +..+++.++.|.|+++....++++++ .+.|++.++
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-----~p~IVVATP 321 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-----RPDIVVATP 321 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-----CCCEEEecc
Confidence 34555 89999999988888877733 35689999999999999999999887 234555553
No 194
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=50.37 E-value=30 Score=27.17 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=25.2
Q ss_pred CCCCeEEEEecc-HHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 78 LTQHRALIFCQL-RAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~-~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.+.++++|||+. -.........| ...|+.+..++|++.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L---~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLL---ESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHH---HHcCCceeEeCCcHH
Confidence 567899999973 33333444555 334777889999874
No 195
>PTZ00062 glutaredoxin; Provisional
Probab=49.20 E-value=1e+02 Score=26.75 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=40.2
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccc
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ 143 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~ 143 (292)
..++|+||+. +-.....+...|. ..++.|..++=......|+.+. ++...+.+..+.+...
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~---~~~i~y~~~DI~~d~~~~~~l~-~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLN---SSGVKYETYNIFEDPDLREELK-VYSNWPTYPQLYVNGE 177 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHH---HcCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCeEEECCE
Confidence 5689999987 4556777888884 3478888877766666666555 4544445455555544
No 196
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=47.97 E-value=46 Score=25.25 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~ 117 (292)
.++++++|||..-.........|.. .|+ .+..++|++
T Consensus 76 ~~~~~iv~yc~~g~~s~~~~~~l~~---~G~~~v~~l~GG~ 113 (118)
T cd01449 76 TPDKPVIVYCGSGVTACVLLLALEL---LGYKNVRLYDGSW 113 (118)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHH---cCCCCeeeeCChH
Confidence 4678899999986556666666733 355 366778875
No 197
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=46.60 E-value=1.5e+02 Score=30.63 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=56.0
Q ss_pred CCCCeEEEEeccH----HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCC
Q psy15261 78 LTQHRALIFCQLR----AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 153 (292)
Q Consensus 78 ~~~~KvlIFsq~~----~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~ 153 (292)
..|.++.+-+..- +..+-+.++| ...|+++..++|++..++|.++..+-. ++.+.+++.+....-..+.+++
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l---~~~~i~V~lLtG~~kgk~r~~~l~~l~-~G~~~ivVGTHALiQd~V~F~~ 384 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWL---EPLGIRVALLTGSLKGKARKEILEQLA-SGEIDIVVGTHALIQDKVEFHN 384 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHh---hhcCCeEEEeecccchhHHHHHHHHHh-CCCCCEEEEcchhhhcceeecc
Confidence 5677777777542 2344555666 444899999999999999999999998 5667888876655666666666
Q ss_pred CCEEEE
Q psy15261 154 ADTVIF 159 (292)
Q Consensus 154 a~~vI~ 159 (292)
.-.||.
T Consensus 385 LgLVIi 390 (677)
T COG1200 385 LGLVII 390 (677)
T ss_pred eeEEEE
Confidence 555544
No 198
>PRK14701 reverse gyrase; Provisional
Probab=46.55 E-value=99 Score=35.44 Aligned_cols=66 Identities=9% Similarity=0.135 Sum_probs=47.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccC---CCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCE---MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~---~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
.+.++||.+.....+.-+...|.... ..++.+..++|+++..++....+++.. +.+.+++.++.-.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~-g~~dILV~TPgrL 189 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN-GDFDILVTTAQFL 189 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECCchh
Confidence 56799999999887666665553311 135778899999999988888888873 4567888776543
No 199
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=46.12 E-value=26 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
..++++++||............|. ..|+.+..++|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~---~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILT---QNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHH---HCCCCEEEecCCHH
Confidence 356789999987555666666773 34567888999863
No 200
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=45.84 E-value=74 Score=34.43 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCCCeEEEEeccHHH----HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 78 LTQHRALIFCQLRAM----LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~----l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
..|+|++|....... .+.|..+-.+.....+.++ +||.++.++++.++++|.+ ++.+|++.++.-..
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~-gdfdIlitTs~FL~ 193 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIES-GDFDILITTSQFLS 193 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhc-CCccEEEEeHHHHH
Confidence 457888877776544 4555555444332344555 9999999999999999994 56688887765544
No 201
>PRK14873 primosome assembly protein PriA; Provisional
Probab=44.43 E-value=42 Score=34.61 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=48.5
Q ss_pred HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecc----cccccccCCCCCCEEEEeCC------
Q psy15261 93 LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT----QVGGLGLNLTGADTVIFVDH------ 162 (292)
Q Consensus 93 l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst----~~~~~GlnL~~a~~vI~~d~------ 162 (292)
.+.+++.|.+ .+|+.++.++++. .+++.|.. ..++++.+. .+.| | ...|+++|.
T Consensus 440 ter~eeeL~~-~FP~~~V~r~d~d-------~~l~~~~~--~~~IlVGTqgaepm~~g-~-----~~lV~ildaD~~L~~ 503 (665)
T PRK14873 440 ARRTAEELGR-AFPGVPVVTSGGD-------QVVDTVDA--GPALVVATPGAEPRVEG-G-----YGAALLLDAWALLGR 503 (665)
T ss_pred HHHHHHHHHH-HCCCCCEEEEChH-------HHHHhhcc--CCCEEEECCCCcccccC-C-----ceEEEEEcchhhhcC
Confidence 3455555543 4578888888764 47888963 567777654 2332 3 344444443
Q ss_pred -CCC-----hhhHHHHhHhhhhcCCcceEEEE
Q psy15261 163 -DWS-----PMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 163 -~wn-----p~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++. .....|+.||++|-+....|.|-
T Consensus 504 pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 504 QDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred CCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 332 22346999999997766666664
No 202
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=44.23 E-value=56 Score=26.78 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=28.6
Q ss_pred ceEEEEEEEeC-----CCHHHHHHHHHHHHHHHHHHHhc
Q psy15261 183 KVVNVYRLITK-----NTLEEKIMNLQKFKLLTANTVIN 216 (292)
Q Consensus 183 ~~V~Vy~lv~~-----~TvEe~i~~~~~~K~~~~~~vv~ 216 (292)
+-|.||..+++ -|||+.+++..+.|..-+..+..
T Consensus 9 RYVNVhFIiAr~~ng~~sVDedlldiIk~Kskef~qLf~ 47 (148)
T PF08469_consen 9 RYVNVHFIIARLSNGRPSVDEDLLDIIKDKSKEFNQLFK 47 (148)
T ss_pred eEEEEEEEEEEcCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66999999983 47999999999999988776653
No 203
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=43.87 E-value=98 Score=25.41 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=34.3
Q ss_pred eEEEEecc-------HHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhc
Q psy15261 82 RALIFCQL-------RAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN 130 (292)
Q Consensus 82 KvlIFsq~-------~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~ 130 (292)
||+||+.+ -.....+..+| ...++.|..++=++....++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL---~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAIL---ESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHH---HHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 57788876 44567777888 445889999998888888888776654
No 204
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=43.56 E-value=2e+02 Score=28.08 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
...++-++||+-.+...+..++... .-|+.++.-.|....-.-...++.|..|+.++++++...
T Consensus 149 ~~G~valvsqSG~~~~~~~~~~~~~-g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E--------------- 212 (447)
T TIGR02717 149 KKGGIAFISQSGALLTALLDWAEKN-GVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLE--------------- 212 (447)
T ss_pred CCCCEEEEechHHHHHHHHHHHHhc-CCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEec---------------
Confidence 3567999999999887777776442 246777777776554455678999998898888776533
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRL 190 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~l 190 (292)
.--++..+..+..|+.| .|+|-+|+.
T Consensus 213 ---~~~~~~~f~~aa~~a~~---~KPVv~~k~ 238 (447)
T TIGR02717 213 ---GIKDGRKFLKTAREISK---KKPIVVLKS 238 (447)
T ss_pred ---CCCCHHHHHHHHHHHcC---CCCEEEEec
Confidence 22367778787777765 588888754
No 205
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=42.72 E-value=86 Score=34.64 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCce---EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccC-CC-
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVT---YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN-LT- 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~---~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gln-L~- 152 (292)
.+.++||.++.+..+.-+...+... ...++. +..++|+++..++.....++.. +++.|++.++.....-+. +.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~-~~~dIlV~Tp~rL~~~~~~l~~ 198 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN-GDFDILITTTMFLSKNYDELGP 198 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHHHHHHHhcC
Confidence 4679999999988766665555331 112333 3458999999998888888874 456788877654432221 12
Q ss_pred CCCEEEEeC
Q psy15261 153 GADTVIFVD 161 (292)
Q Consensus 153 ~a~~vI~~d 161 (292)
..+.+|+=|
T Consensus 199 ~~~~iVvDE 207 (1171)
T TIGR01054 199 KFDFIFVDD 207 (1171)
T ss_pred CCCEEEEeC
Confidence 455555543
No 206
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=41.03 E-value=2.5 Score=43.98 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=34.9
Q ss_pred cccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCc
Q psy15261 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK 182 (292)
Q Consensus 141 st~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~ 182 (292)
....+..|.++..++..+.++++|+| ..|++++.|++++.
T Consensus 485 kn~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 485 KNDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred hhhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 45667788888888888899999999 69999999999995
No 207
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=39.84 E-value=35 Score=25.24 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
..+++++|+|..-.........|. ..|+.+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~---~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLA---ERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHH---HcCceeEEeCCcHH
Confidence 456889999998666667777773 34777778888763
No 208
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=39.07 E-value=1.5e+02 Score=27.86 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=35.1
Q ss_pred cccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEE
Q psy15261 36 DIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRL 113 (292)
Q Consensus 36 ~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i 113 (292)
++.+++-....+.++.++. ..|+.|+|.+.-...+..|-+.. |+.+..+
T Consensus 6 Di~~p~hvhfFk~~I~eL~-----------------------~~GheV~it~R~~~~~~~LL~~y------g~~y~~i 54 (335)
T PF04007_consen 6 DITHPAHVHFFKNIIRELE-----------------------KRGHEVLITARDKDETEELLDLY------GIDYIVI 54 (335)
T ss_pred ECCCchHHHHHHHHHHHHH-----------------------hCCCEEEEEEeccchHHHHHHHc------CCCeEEE
Confidence 5667777888889999884 67899999998665544444333 6666665
No 209
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=38.48 E-value=78 Score=25.36 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEecc---HHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 44 PALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQL---RAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 44 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~---~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
..+.+++..+| +.+..+|||||.. ....-.+.-.|...+.+ .+..++|+.+
T Consensus 81 ~~~~~~~~~~G----------------------I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~--~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKG----------------------IDLDKHLIATDGDDLGGFTACHIALAARLCGHP--DVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcC----------------------CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCC--CeEEeCCCHH
Confidence 46778888876 3467899999964 22222222223111333 3667888753
No 210
>KOG1133|consensus
Probab=37.91 E-value=1.9e+02 Score=30.10 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=46.0
Q ss_pred CeEEEEeccHHHHHHHHHHHhccC----CCCceEEEEECCCCHHHHHHHHHHhcC--CCCeeEEEec--ccccccccCCC
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCE----MPGVTYLRLDGSVVSTARHAIVTKFNS--DPTIDVLLLT--TQVGGLGLNLT 152 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~----~~~~~~~~i~G~~~~~~R~~~v~~F~~--~~~~~vlLls--t~~~~~GlnL~ 152 (292)
.=||+|..+-+.+..+.+...+.+ ..+.+-+.+....+ -+.+++.|.. +.+.-.+|++ ..-.++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 557888887777777777663211 11112122222222 2456777753 1111234444 33356999997
Q ss_pred C--CCEEEEeCCCCC
Q psy15261 153 G--ADTVIFVDHDWS 165 (292)
Q Consensus 153 ~--a~~vI~~d~~wn 165 (292)
+ +..||.+..|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 6 899999999874
No 211
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=36.89 E-value=1.3e+02 Score=31.95 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=40.9
Q ss_pred CeEEEEeccHHH----HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 81 HRALIFCQLRAM----LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 81 ~KvlIFsq~~~~----l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
.++|+++..+.. ++.+.+++..... ++.+.++||.+++.+|..++. ..++|||.+++..
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~-~v~~~~y~Gdt~~~~r~~~~~-----~pp~IllTNpdML 178 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPG-KVTFGRYTGDTPPEERRAIIR-----NPPDILLTNPDML 178 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCC-cceeeeecCCCChHHHHHHHh-----CCCCEEEeCHHHH
Confidence 478999988764 5566666643222 699999999999999875543 2346777666553
No 212
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=36.56 E-value=2.1e+02 Score=27.61 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=50.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhcc--CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKC--EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLT 152 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~--~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~ 152 (292)
..++||.+.....+.-+.+.+... ..+++.+..++|+.+....... +. .++.|+++++...- ..+++.
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~--~~~~IvV~Tp~rl~~~l~~~~~~l~ 146 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LE--HGAHIIVGTPGRILDHLRKGTLDLD 146 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hc--CCCCEEEEChHHHHHHHHcCCccHH
Confidence 347999999998877766655322 2347889999999887554332 32 34567777654321 345667
Q ss_pred CCCEEEEeCC
Q psy15261 153 GADTVIFVDH 162 (292)
Q Consensus 153 ~a~~vI~~d~ 162 (292)
....+|+=|-
T Consensus 147 ~l~~lViDEa 156 (460)
T PRK11776 147 ALNTLVLDEA 156 (460)
T ss_pred HCCEEEEECH
Confidence 7777776443
No 213
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=36.46 E-value=1.6e+02 Score=27.15 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=50.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC--CHHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV--VSTARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~--~~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
...++=++||+-.+...+..++... .-|+.++.-.|.. ..-.-...++.|..|+.++++++-...+|
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~-giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G 217 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAV-GLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGG 217 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHc-CCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCC
Confidence 4567889999998877777776443 3477777778876 55556678999988999999887766554
No 214
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=36.16 E-value=1.3e+02 Score=29.80 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=49.8
Q ss_pred EEEEeccHHHHHHHHHHHhccCC-C-CceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccc----ccccc-cCCCCCC
Q psy15261 83 ALIFCQLRAMLDIVENDLFKCEM-P-GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ----VGGLG-LNLTGAD 155 (292)
Q Consensus 83 vlIFsq~~~~l~~l~~~L~~~~~-~-~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~----~~~~G-lnL~~a~ 155 (292)
+||++..+..+.-+.+.+..... . ++.++.+.|+++...+...+++ ++++++.++. ....| +++....
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-----~~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-----GVDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-----CCCEEEECccHHHHHHHcCCcchhhcC
Confidence 99999999887777766644322 2 6889999999987665544443 3677777654 22333 6777777
Q ss_pred EEEEe
Q psy15261 156 TVIFV 160 (292)
Q Consensus 156 ~vI~~ 160 (292)
++|+=
T Consensus 177 ~lVlD 181 (513)
T COG0513 177 TLVLD 181 (513)
T ss_pred EEEec
Confidence 77763
No 215
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=35.84 E-value=96 Score=21.96 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=35.6
Q ss_pred EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHH
Q psy15261 156 TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNL 203 (292)
Q Consensus 156 ~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~ 203 (292)
+|..++-.++|....||+..+.. |.+=++=|++-..+-|.|+++-..
T Consensus 16 rvy~l~e~~Dp~d~~~A~~~a~e-~d~iplGIfY~~~~ptfee~~~~~ 62 (67)
T PF12367_consen 16 RVYKLDEDHDPSDREAAMEKARE-GDKIPLGIFYRNERPTFEERLPEL 62 (67)
T ss_pred heEECCCCCCchhHHHHHHHHHh-cCCceEEEEEeCCCCCHHHHhhhh
Confidence 56666778999999999998877 655555555555588999988654
No 216
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=35.56 E-value=44 Score=23.80 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=27.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~~ 118 (292)
..+.++||||........+...|.. .|+. +..++|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~---~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRE---LGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHH---cCCCceEEecCCHH
Confidence 5678999999876667777777744 3554 778888863
No 217
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=35.32 E-value=1.9e+02 Score=28.87 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=71.0
Q ss_pred CeEEEEeccHHH----HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc-----ccccCC
Q psy15261 81 HRALIFCQLRAM----LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNL 151 (292)
Q Consensus 81 ~KvlIFsq~~~~----l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~-----~~GlnL 151 (292)
.|+|+.+..+.. ...+.+.+ ..|.-.++.++|.+++++|... |+ .-+|++.++.+. +-=+|+
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~---~ip~~~i~~ltGev~p~~R~~~---w~---~~kVfvaTPQvveNDl~~Grid~ 129 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVT---GIPEDEIAALTGEVRPEEREEL---WA---KKKVFVATPQVVENDLKAGRIDL 129 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHh---CCChhheeeecCCCChHHHHHH---Hh---hCCEEEeccHHHHhHHhcCccCh
Confidence 389998887764 34455555 6677788999999999999765 43 235777777762 223688
Q ss_pred CCCCEEEEeCCCCChhh--HHHHhHhhhhcCCcceEEEEEEE-eCCCHHHHHHHHHH
Q psy15261 152 TGADTVIFVDHDWSPMK--DLQAMDRAHRIGQKKVVNVYRLI-TKNTLEEKIMNLQK 205 (292)
Q Consensus 152 ~~a~~vI~~d~~wnp~~--~~Qa~gR~~RiGQ~~~V~Vy~lv-~~~TvEe~i~~~~~ 205 (292)
.+..++||=+-+-.-.. |.+-.-...|. .+..+|.-|- ++|+-.++|.+.++
T Consensus 130 ~dv~~lifDEAHRAvGnyAYv~Va~~y~~~--~k~~~ilgLTASPGs~~ekI~eV~~ 184 (542)
T COG1111 130 DDVSLLIFDEAHRAVGNYAYVFVAKEYLRS--AKNPLILGLTASPGSDLEKIQEVVE 184 (542)
T ss_pred HHceEEEechhhhccCcchHHHHHHHHHHh--ccCceEEEEecCCCCCHHHHHHHHH
Confidence 88888888665532222 22322233332 2344444443 46777777776654
No 218
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=34.73 E-value=66 Score=34.73 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=47.3
Q ss_pred HHHHHHHh-cCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCc--ceEEEEEEE
Q psy15261 122 RHAIVTKF-NSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK--KVVNVYRLI 191 (292)
Q Consensus 122 R~~~v~~F-~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~--~~V~Vy~lv 191 (292)
+.....+| ..+..+++||+. +..=+|.+-+..++ +++|-+.-.....||+.|+.|+=-. ....|..++
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEE-ccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 34455565 555667777766 56667888776665 5778888888999999999998544 345554444
No 219
>PHA03371 circ protein; Provisional
Probab=34.35 E-value=35 Score=30.17 Aligned_cols=44 Identities=30% Similarity=0.492 Sum_probs=31.5
Q ss_pred cccccCCCCCCEE-EEeCCCC-------------ChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 145 GGLGLNLTGADTV-IFVDHDW-------------SPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 145 ~~~GlnL~~a~~v-I~~d~~w-------------np~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
+|+=+||++.+.+ |+.|..- +...+.|.|||++-+|..+.-.||
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iy 87 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIY 87 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEE
Confidence 4556677776666 5554443 344567999999999999888877
No 220
>KOG0923|consensus
Probab=34.17 E-value=68 Score=33.12 Aligned_cols=44 Identities=20% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlL 139 (292)
-+|||+-++- -+.-| ..+|+.|+.=-|-. . .+.|+...+..-++
T Consensus 532 aRKVVLATNI------AETSl---TIdgI~yViDpGf~-K------~nsynprtGmesL~ 575 (902)
T KOG0923|consen 532 ARKVVLATNI------AETSL---TIDGIKYVIDPGFV-K------QNSYNPRTGMESLL 575 (902)
T ss_pred ceeEEEeecc------hhhce---eecCeEEEecCccc-c------ccCcCCCcCceeEE
Confidence 3566666553 23344 66788876544432 2 45677655544333
No 221
>KOG0352|consensus
Probab=33.82 E-value=61 Score=31.72 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=48.6
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEecccccc
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGG 146 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLlst~~~~ 146 (292)
.=.|||+.....+.-=-+.| ...++++-.++..++..+|.+++..... .+++.+|.+++..++
T Consensus 62 gITIV~SPLiALIkDQiDHL---~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AA 125 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHL---KRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAA 125 (641)
T ss_pred CeEEEehHHHHHHHHHHHHH---HhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhh
Confidence 37889998776654444445 4457899999999999999999998874 567888888877655
No 222
>PF12622 NpwBP: mRNA biogenesis factor
Probab=33.59 E-value=21 Score=23.59 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=9.8
Q ss_pred EEEEeCCCCChh
Q psy15261 156 TVIFVDHDWSPM 167 (292)
Q Consensus 156 ~vI~~d~~wnp~ 167 (292)
.-|+||+.|||.
T Consensus 3 kSiyydP~~NP~ 14 (48)
T PF12622_consen 3 KSIYYDPELNPL 14 (48)
T ss_pred cceecCCccCCC
Confidence 358999999985
No 223
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=31.75 E-value=2.5e+02 Score=22.24 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=45.8
Q ss_pred CeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHH-HHHHHHHHhcCCCCeeEEEeccccccc-----ccCCCC
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVST-ARHAIVTKFNSDPTIDVLLLTTQVGGL-----GLNLTG 153 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~-~R~~~v~~F~~~~~~~vlLlst~~~~~-----GlnL~~ 153 (292)
.+++|.++....++-....+... ...++.+..++|+.+.. +....+ ...+.++++++...-. .+++..
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ilv~T~~~l~~~~~~~~~~~~~ 119 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL-----SNQADILVTTPEQLLDLISNGKINISR 119 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH-----HTTSSEEEEEHHHHHHHHHTTSSTGTT
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc-----cccccccccCcchhhcccccccccccc
Confidence 49999999998776666555332 23567899999988754 222222 2245678877665332 234555
Q ss_pred CCEEEE
Q psy15261 154 ADTVIF 159 (292)
Q Consensus 154 a~~vI~ 159 (292)
.+.+|+
T Consensus 120 ~~~iVi 125 (169)
T PF00270_consen 120 LSLIVI 125 (169)
T ss_dssp ESEEEE
T ss_pred ceeecc
Confidence 555554
No 224
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=31.48 E-value=1e+02 Score=22.61 Aligned_cols=61 Identities=10% Similarity=0.198 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCc-ceEEEEEEEe
Q psy15261 115 GSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK-KVVNVYRLIT 192 (292)
Q Consensus 115 G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~ 192 (292)
--++.++.+.++++|+-... ..- +..++.....+.+...+.| ++-|-+.+ .....||++.
T Consensus 16 ~iLs~eE~~~lL~~y~i~~~qLP~-I~~~DPv~r~~g~k~GdVv-----------------kI~R~S~taG~~v~YR~Vv 77 (79)
T PRK09570 16 EILSEEEAKKLLKEYGIKPEQLPK-IKASDPVVKAIGAKPGDVI-----------------KIVRKSPTAGEAVYYRLVV 77 (79)
T ss_pred EECCHHHHHHHHHHcCCCHHHCCc-eeccChhhhhcCCCCCCEE-----------------EEEECCCCCCccEEEEEEe
Confidence 34678899999999985332 222 3456777778888777766 55566666 5567888886
Q ss_pred C
Q psy15261 193 K 193 (292)
Q Consensus 193 ~ 193 (292)
+
T Consensus 78 ~ 78 (79)
T PRK09570 78 E 78 (79)
T ss_pred C
Confidence 5
No 225
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=30.75 E-value=1.1e+02 Score=23.41 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=24.3
Q ss_pred CCCCeEEEEeccH-HHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 78 LTQHRALIFCQLR-AMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~-~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
.++..+++||... .........|.. .|+. +..++|++
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~---~G~~~v~~l~GG~ 115 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRY---FGHENVRVLDGGL 115 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHH---cCCCCEEEecCCH
Confidence 4678999999883 555555556633 3443 66778876
No 226
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.31 E-value=3.4e+02 Score=26.20 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
.|-..+|.+.+..+ +.+..++.|+.--..+..+.-.| -.+|-.++..+.-...
T Consensus 62 nPT~~~lE~~~a~L------------------------Eg~~~~~afsSGmaAI~~~~l~l---l~~GD~vl~~~~~YG~ 114 (396)
T COG0626 62 NPTRDALEEALAEL------------------------EGGEDAFAFSSGMAAISTALLAL---LKAGDHVLLPDDLYGG 114 (396)
T ss_pred CccHHHHHHHHHHh------------------------hCCCcEEEecCcHHHHHHHHHHh---cCCCCEEEecCCccch
Confidence 56778888888876 46778888888777666644444 3345444443332221
Q ss_pred HHHHHHHHHhcCCCCeeEEEeccccccccc-CCC-CCCEEEEeCCCCChhhHHHHhHhhhhcC
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGL-NLT-GADTVIFVDHDWSPMKDLQAMDRAHRIG 180 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl-nL~-~a~~vI~~d~~wnp~~~~Qa~gR~~RiG 180 (292)
.. +.++.+-..-++.+....+.....++ .+. .-..+||+|.|-||....+=+.++-|+.
T Consensus 115 t~--~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 115 TY--RLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred HH--HHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHH
Confidence 11 34444443456677666555554444 233 2567999999999987665555544443
No 227
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.26 E-value=66 Score=24.31 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=25.7
Q ss_pred CCCCeEEEEeccHH--HHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRA--MLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~--~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
..+.+++|||+... ........|. ..|+.+..++|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~---~~G~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLA---ELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH---HcCCeEEEecCCHH
Confidence 46789999998642 4455555663 33666778898863
No 228
>PRK13556 azoreductase; Provisional
Probab=29.87 E-value=36 Score=29.29 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=24.9
Q ss_pred CCCCCEEEEeCCCCC---hhhHHHHhHhhhhcC
Q psy15261 151 LTGADTVIFVDHDWS---PMKDLQAMDRAHRIG 180 (292)
Q Consensus 151 L~~a~~vI~~d~~wn---p~~~~Qa~gR~~RiG 180 (292)
+..|+.||+.-|-|| |......++|+.|.|
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g 119 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAG 119 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCC
Confidence 457899999999887 667778899999986
No 229
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=29.10 E-value=64 Score=23.56 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.+.++++||+.-.........| ...|+.+..++|++
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L---~~~G~~v~~l~GG~ 90 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWL---AQMGWEVYVLEGGL 90 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHH---HHcCCEEEEecCcH
Confidence 3578999998755545555566 33467777788886
No 230
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.99 E-value=90 Score=25.78 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=63.4
Q ss_pred ccCCHH-HHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 39 HAAKLP-ALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 39 ~S~Kl~-~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.++|-. .|-+++.++ +..+.|+||....+.+++.+.++| + +.+ .+++-..
T Consensus 14 GaGKTr~vlp~~~~~~-----------------------i~~~~rvLvL~PTRvva~em~~aL---~--~~~-~~~~t~~ 64 (148)
T PF07652_consen 14 GAGKTRRVLPEIVREA-----------------------IKRRLRVLVLAPTRVVAEEMYEAL---K--GLP-VRFHTNA 64 (148)
T ss_dssp TSSTTTTHHHHHHHHH-----------------------HHTT--EEEEESSHHHHHHHHHHT---T--TSS-EEEESTT
T ss_pred CCCCcccccHHHHHHH-----------------------HHccCeEEEecccHHHHHHHHHHH---h--cCC-cccCcee
Confidence 467777 488888887 478999999999999999999999 3 333 3334332
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccc---cccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQV---GGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~---~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
-. + ..|. ...+.| .++.-. ...|..+.+.+.+|+=|..|.=..-+=+.|.++...-...+.+
T Consensus 65 ~~--~----~~~g-~~~i~v-Mc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~ 129 (148)
T PF07652_consen 65 RM--R----THFG-SSIIDV-MCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKV 129 (148)
T ss_dssp SS----------S-SSSEEE-EEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EE
T ss_pred ee--c----cccC-CCcccc-cccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeE
Confidence 11 0 2232 222333 222111 2236667778888888888855444556666665544444444
No 231
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=28.95 E-value=2e+02 Score=19.79 Aligned_cols=59 Identities=12% Similarity=0.268 Sum_probs=36.2
Q ss_pred eEEEEecc-HHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccc
Q psy15261 82 RALIFCQL-RAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV 144 (292)
Q Consensus 82 KvlIFsq~-~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~ 144 (292)
|+.||+.. -........+| ...+++|..++=...+..+.++.+.-. ...+.++++....
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L---~~~gi~~~~~di~~~~~~~~el~~~~g-~~~vP~v~i~~~~ 61 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFL---REKGLPYVEINIDIFPERKAELEERTG-SSVVPQIFFNEKL 61 (73)
T ss_pred EEEEEecCCChhHHHHHHHH---HHCCCceEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEE
Confidence 67777765 34567777777 345788888877666655555544433 3455555655433
No 232
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=28.85 E-value=3.1e+02 Score=26.14 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=48.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHhc-cCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFK-CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTG 153 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~-~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~ 153 (292)
+.++||.+.....+.-+.+.+.. ....++.+..++|+.+...+...+ . .++.|++.++.... ..+++..
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~--~~~~IlV~Tp~rl~~~~~~~~~~~~~ 147 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---S--ENQDIVVATPGRLLQYIKEENFDCRA 147 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---c--CCCCEEEEChHHHHHHHHcCCcCccc
Confidence 46899999988876555443321 144578999999998876554433 2 24567777753321 3445666
Q ss_pred CCEEEEeC
Q psy15261 154 ADTVIFVD 161 (292)
Q Consensus 154 a~~vI~~d 161 (292)
...+|+=|
T Consensus 148 v~~lViDE 155 (434)
T PRK11192 148 VETLILDE 155 (434)
T ss_pred CCEEEEEC
Confidence 67666644
No 233
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.76 E-value=3.3e+02 Score=22.83 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=32.8
Q ss_pred CCeEEEEecc--------HHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCC
Q psy15261 80 QHRALIFCQL--------RAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD 132 (292)
Q Consensus 80 ~~KvlIFsq~--------~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~ 132 (292)
.++++|+|+. ...+..+++.| |+++.+. +...+.-..++++.|...
T Consensus 77 ~~~v~IvSNsaGs~~d~~~~~a~~~~~~l------gIpvl~h-~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 77 KDRVLIVSNSAGSSDDPDGERAEALEKAL------GIPVLRH-RAKKPGCFREILKYFKCQ 130 (168)
T ss_pred CCeEEEEECCCCcccCccHHHHHHHHHhh------CCcEEEe-CCCCCccHHHHHHHHhhc
Confidence 4589999997 45678888888 6776554 444446667888888743
No 234
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=28.68 E-value=1.1e+02 Score=29.25 Aligned_cols=70 Identities=14% Similarity=-0.020 Sum_probs=55.3
Q ss_pred CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCc
Q psy15261 29 RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGV 108 (292)
Q Consensus 29 ~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~ 108 (292)
.....++-+..++|-+.+.+-+... +..|.+|.|-+...+++-.|...|.. .+.+.
T Consensus 116 k~~~lv~AV~GaGKTEMif~~i~~a-----------------------l~~G~~vciASPRvDVclEl~~Rlk~-aF~~~ 171 (441)
T COG4098 116 KEDTLVWAVTGAGKTEMIFQGIEQA-----------------------LNQGGRVCIASPRVDVCLELYPRLKQ-AFSNC 171 (441)
T ss_pred cCcEEEEEecCCCchhhhHHHHHHH-----------------------HhcCCeEEEecCcccchHHHHHHHHH-hhccC
Confidence 3344456778899999998888775 47899999999999998888888854 56678
Q ss_pred eEEEEECCCCHHHH
Q psy15261 109 TYLRLDGSVVSTAR 122 (292)
Q Consensus 109 ~~~~i~G~~~~~~R 122 (292)
.+..++|..++.-|
T Consensus 172 ~I~~Lyg~S~~~fr 185 (441)
T COG4098 172 DIDLLYGDSDSYFR 185 (441)
T ss_pred CeeeEecCCchhcc
Confidence 89999998766544
No 235
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=28.66 E-value=90 Score=22.76 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=25.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~ 117 (292)
.++++++|||............|.. .|+ ++..++|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~---~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLA---LGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHH---cCCCCEEEeCCCH
Confidence 3567899999876665556666633 344 466778875
No 236
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=27.61 E-value=96 Score=25.48 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhc
Q psy15261 42 KLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFK 102 (292)
Q Consensus 42 Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~ 102 (292)
=+.++..|+.++ ...|.||+|-|......+.|...|-.
T Consensus 14 ~~~~~c~L~~k~-----------------------~~~G~rvlI~~~d~~q~e~LD~~LWt 51 (144)
T COG2927 14 LLAAACRLAEKA-----------------------WRSGWRVLIQCEDEAQAEALDEHLWT 51 (144)
T ss_pred HHHHHHHHHHHH-----------------------HHcCCeEEEEeCCHHHHHHHHHhhhc
Confidence 344889999887 37899999999999999999999944
No 237
>KOG0442|consensus
Probab=27.57 E-value=1.2e+02 Score=31.94 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=37.6
Q ss_pred CCEEEEeCCCCChhhHHHHhHhhhhcCCc---ceEEEEEEEeCCCHHHHHHHHHHHHH-HHHHHHhcCC
Q psy15261 154 ADTVIFVDHDWSPMKDLQAMDRAHRIGQK---KVVNVYRLITKNTLEEKIMNLQKFKL-LTANTVINSE 218 (292)
Q Consensus 154 a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~---~~V~Vy~lv~~~TvEe~i~~~~~~K~-~~~~~vv~~~ 218 (292)
-.+||+|+++-++.+ ++-+++-+ +..+||.++..+|+||.-|.-.-++. ..+..+++..
T Consensus 545 P~yvi~y~~~~~~vR------qiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre~ 607 (892)
T KOG0442|consen 545 PRYVIMYESDLTFVR------QIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIREK 607 (892)
T ss_pred CceEEEEcCCCCcee------eeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhhc
Confidence 456888988865543 34444443 45779999999999987765444333 3345555443
No 238
>PRK09401 reverse gyrase; Reviewed
Probab=27.14 E-value=2.8e+02 Score=30.78 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=49.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEEC--CCCHHHHHHHHHHhcCCCCeeEEEeccccccc---ccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDG--SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGL---GLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G--~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~---GlnL~ 152 (292)
.+.++||.++....+.-+.+.+... ...++.+..+.| +++.+++.+....+.. +...|++.++.-... .+.+.
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~-~~~~IlV~Tp~rL~~~~~~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE-GDFDILVTTSQFLSKNFDELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhc-CCCCEEEECHHHHHHHHHhcccc
Confidence 4789999999988777666665332 223455555544 4456777777787773 446788877644332 23334
Q ss_pred CCCEEEEe
Q psy15261 153 GADTVIFV 160 (292)
Q Consensus 153 ~a~~vI~~ 160 (292)
..+.+|+=
T Consensus 201 ~~~~lVvD 208 (1176)
T PRK09401 201 KFDFVFVD 208 (1176)
T ss_pred ccCEEEEE
Confidence 46666553
No 239
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=26.89 E-value=1.4e+02 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=48.1
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
.-+||.+.....+..=.+.| ...|+.+..+++..+..+|..++.+.. .+.+++|.+++.-.
T Consensus 58 G~TLVVSPLiSLM~DQV~~l---~~~Gi~A~~lnS~l~~~e~~~v~~~l~-~g~~klLyisPErl 118 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQL---EAAGIRAAYLNSTLSREERQQVLNQLK-SGQLKLLYISPERL 118 (590)
T ss_pred CCEEEECchHHHHHHHHHHH---HHcCceeehhhcccCHHHHHHHHHHHh-cCceeEEEECchhh
Confidence 36788888777655444555 556899999999999999999999998 46688888887653
No 240
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=26.22 E-value=52 Score=24.13 Aligned_cols=38 Identities=11% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 77 ILTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 77 ~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
+....+++|||+.-.........|.. .|+. +..++|++
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~---~G~~~v~~l~Gg~ 96 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQD---MGLKPVYNIEGGF 96 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHH---cChHHhEeecCcH
Confidence 35678999999875555566666633 3554 66788875
No 241
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=26.05 E-value=2.9e+02 Score=27.84 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc------cccCCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG------LGLNLT 152 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~------~GlnL~ 152 (292)
+.++||.+.+...+.-+.+.+... ...++.+..++|+.+.......+. .++.|+|.++...- ..+++.
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~-----~~~dIiV~TP~rL~~~l~~~~~~~l~ 158 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ-----QGVDVIIATPGRLIDYVKQHKVVSLH 158 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh-----CCCCEEEECHHHHHHHHHhccccchh
Confidence 468999999988876555544221 335788999999988765544442 24567777754321 135566
Q ss_pred CCCEEEEeC
Q psy15261 153 GADTVIFVD 161 (292)
Q Consensus 153 ~a~~vI~~d 161 (292)
.+..+|+=|
T Consensus 159 ~v~~lViDE 167 (572)
T PRK04537 159 ACEICVLDE 167 (572)
T ss_pred heeeeEecC
Confidence 666666543
No 242
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=25.62 E-value=2.5e+02 Score=31.96 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc-------------cCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK-------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~-------------~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
.+-++|+.+..+....-+.+.|.. ....++.+...+|.++..+|.+++++ .+.|||.++...
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~-----ppdILVTTPEsL 110 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN-----PPDILITTPESL 110 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC-----CCCEEEecHHHH
Confidence 457899999999887666655421 01247899999999999888765541 235666665542
Q ss_pred c-----cc-cCCCCCCEEEEeCC
Q psy15261 146 G-----LG-LNLTGADTVIFVDH 162 (292)
Q Consensus 146 ~-----~G-lnL~~a~~vI~~d~ 162 (292)
- .+ .+|.+..+||+=|.
T Consensus 111 ~~LLtsk~r~~L~~Vr~VIVDE~ 133 (1490)
T PRK09751 111 YLMLTSRARETLRGVETVIIDEV 133 (1490)
T ss_pred HHHHhhhhhhhhccCCEEEEecH
Confidence 1 11 24667777777543
No 243
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=25.39 E-value=3.2e+02 Score=21.03 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=52.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC-CHHHHHHHHHHhcC-CCCeeEEEecccccccccCC---CC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV-VSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNL---TG 153 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~-~~~~R~~~v~~F~~-~~~~~vlLlst~~~~~GlnL---~~ 153 (292)
.+..++.-.++.+.+..+. ..+.+.++.++=.. .......+++..+. +.++.|+|++......-++. ..
T Consensus 16 ~~~~vv~~~~~dd~~~~i~------~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~~~~l~~ 89 (115)
T PF03709_consen 16 RGREVVDADSTDDALAIIE------SFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLPAEVLGE 89 (115)
T ss_dssp TTTEEEEESSHHHHHHHHH------CTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCCHHHHCC
T ss_pred CCCEEEEeCChHHHHHHHH------hCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCCHHHHhh
Confidence 5667766666666665555 44688888888550 01223344444442 56789999987666666663 45
Q ss_pred CCEEEEeCCCCChhhHHHHhH
Q psy15261 154 ADTVIFVDHDWSPMKDLQAMD 174 (292)
Q Consensus 154 a~~vI~~d~~wnp~~~~Qa~g 174 (292)
.+.+|.+. .-+|.-+.-++.
T Consensus 90 v~~~i~l~-~~t~~fia~rI~ 109 (115)
T PF03709_consen 90 VDGFIWLF-EDTAEFIARRIE 109 (115)
T ss_dssp ESEEEETT-TTTHHHHHHHHH
T ss_pred ccEEEEec-CCCHHHHHHHHH
Confidence 66666663 335555544443
No 244
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=25.35 E-value=1.4e+02 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=26.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
..++++++||+.-.....+...|. ..|+. +..++|+.
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~---~~G~~~v~~y~Gs~ 266 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALA---TLDVPNVKLYDGAW 266 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHH---HcCCCCceeeCCCH
Confidence 456789999998777777777773 33553 67788885
No 245
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.29 E-value=1.8e+02 Score=27.25 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=47.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhc-----CCCCeeEEEec
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN-----SDPTIDVLLLT 141 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~-----~~~~~~vlLls 141 (292)
.+.+|||...-..+..-.+..| +.-|+++.++-|..-.+.-+.+...|+ .-+++.+++++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~L---ks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENAL---KSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CCceEEEECCCCcCChhHHHHH---HhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 5789999999999999999999 556999999999887777777777775 22445666665
No 246
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=25.01 E-value=1.6e+02 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCce--EEEEECCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVT--YLRLDGSVV 118 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~--~~~i~G~~~ 118 (292)
.+.+++|||+.-.........|. ..|+. +..+.|+++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~---~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLI---NAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHH---HCCCCcceeEecCCHH
Confidence 46789999987655444556663 34663 677888864
No 247
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=25.00 E-value=3e+02 Score=20.55 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC----CCCeeEEEecccccc
Q psy15261 91 AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS----DPTIDVLLLTTQVGG 146 (292)
Q Consensus 91 ~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~----~~~~~vlLlst~~~~ 146 (292)
.....+...| ...++.|..++=++++..|+.+.++-.. ..-++||+-..-+||
T Consensus 17 ~~~~~v~~lL---~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg 73 (92)
T cd03030 17 KRQQEVLGFL---EAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGD 73 (92)
T ss_pred HHHHHHHHHH---HHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeC
Confidence 3455666777 4568999999999999999988877642 222445554444444
No 248
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=24.82 E-value=7.2e+02 Score=24.95 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=44.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
+..++|.+.....+.--...| ...|+.+..+++..+..++..+...... +.+.++++++...
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l---~~~gi~~~~~~s~~~~~~~~~~~~~l~~-~~~~il~~tpe~l 114 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQL---RAAGVAAAYLNSTLSAKEQQDIEKALVN-GELKLLYVAPERL 114 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHH---HHcCCcEEEEeCCCCHHHHHHHHHHHhC-CCCCEEEEChhHh
Confidence 346788888887765555555 3348899999999999888888777763 4567777665543
No 249
>PF13245 AAA_19: Part of AAA domain
Probab=24.71 E-value=1.2e+02 Score=21.60 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=31.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHH
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDL 100 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L 100 (292)
.|+|-..+.+++..+-- ..... +++++|.+.....++.|.+.|
T Consensus 20 GtGKT~~~~~~i~~l~~------------------~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 20 GTGKTTTLAARIAELLA------------------ARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCHHHHHHHHHHHHHH------------------HhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 67899888888777620 00012 789999999999999998877
No 250
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=24.05 E-value=77 Score=23.38 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
++++++|||+.-.........|.. .|+. +..++|++
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~---~G~~~v~~l~GG~ 96 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKE---RGFKNVYQLKGGI 96 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHH---hCCcceeeechhH
Confidence 567899999875554455556633 3663 67788875
No 251
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.92 E-value=5.5e+02 Score=23.53 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=45.6
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
+|.|.-+..-|.|+.-+++ +..+ ..+ -.++|++.+.+. ....
T Consensus 139 IQfisaviHePeLlILDEP--FSGL--------DPV----N~elLk~~I~~l------------------------k~~G 180 (300)
T COG4152 139 IQFISAVIHEPELLILDEP--FSGL--------DPV----NVELLKDAIFEL------------------------KEEG 180 (300)
T ss_pred HHHHHHHhcCCCEEEecCC--ccCC--------Chh----hHHHHHHHHHHH------------------------HhcC
Confidence 4667777788888654431 1111 111 256788888876 3556
Q ss_pred eEEEEeccHH-HHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 82 RALIFCQLRA-MLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 82 KvlIFsq~~~-~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.++|||.+.- .++.|.+.+ -.-.-.-.+++|.+.
T Consensus 181 atIifSsH~Me~vEeLCD~l---lmL~kG~~V~~G~v~ 215 (300)
T COG4152 181 ATIIFSSHRMEHVEELCDRL---LMLKKGQTVLYGTVE 215 (300)
T ss_pred CEEEEecchHHHHHHHhhhh---heecCCceEEeccHH
Confidence 7888887753 366777666 333334456788763
No 252
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=23.84 E-value=5.4e+02 Score=23.19 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=48.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEE-CCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD-GSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~-G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
.++.+|-++---+.+++..+..|.+ ..|+..++..| |-.++.+.+.++++-+ ..+.++|++.
T Consensus 106 ~~~~~vfllGgkp~V~~~a~~~l~~-~~p~l~ivg~h~GYf~~~e~~~i~~~I~-~s~pdil~Vg 168 (253)
T COG1922 106 EEGKRVFLLGGKPGVAEQAAAKLRA-KYPGLKIVGSHDGYFDPEEEEAIVERIA-ASGPDILLVG 168 (253)
T ss_pred ccCceEEEecCCHHHHHHHHHHHHH-HCCCceEEEecCCCCChhhHHHHHHHHH-hcCCCEEEEe
Confidence 4568888999999999988888865 67888888877 8788877788888887 4556666643
No 253
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=23.52 E-value=4.2e+02 Score=21.83 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=47.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc-----ccccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~-----~~GlnL~ 152 (292)
.+.+++|.+.....+.-....+... ...++.+..++|+.+..++... +. .++.|+++++... ..-.++.
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~iiv~T~~~l~~~l~~~~~~~~ 142 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LK--RGPHIVVATPGRLLDLLERGKLDLS 142 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hc--CCCCEEEEChHHHHHHHHcCCCChh
Confidence 4678999999877655444333221 3357888899999877554333 32 3557788775421 1124556
Q ss_pred CCCEEEEeCCC
Q psy15261 153 GADTVIFVDHD 163 (292)
Q Consensus 153 ~a~~vI~~d~~ 163 (292)
..+.+|+=|.+
T Consensus 143 ~l~~lIvDE~h 153 (203)
T cd00268 143 KVKYLVLDEAD 153 (203)
T ss_pred hCCEEEEeChH
Confidence 66776654444
No 254
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=23.20 E-value=2.3e+02 Score=18.56 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=34.2
Q ss_pred EEEEeccH-HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEE
Q psy15261 83 ALIFCQLR-AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139 (292)
Q Consensus 83 vlIFsq~~-~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlL 139 (292)
|++|+... .......++| ...+++|..++=....+.|+.+.+.... ....+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L---~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~ 54 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL---DEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVF 54 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH---HHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEE
T ss_pred cEEEEcCCCcCHHHHHHHH---HHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEE
Confidence 45666543 3466777777 4458999998888877777777766543 3334444
No 255
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=23.15 E-value=4.8e+02 Score=25.20 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc-----ccccCCCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNLTG 153 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~-----~~GlnL~~ 153 (292)
+.++||.+.....+.-+...+... ...++....+.|+.+...... .+. ..+.|+++++... ...+++..
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~--~~~~IiV~TP~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR--GGVDVLVATPGRLLDLEHQNAVKLDQ 149 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc--CCCcEEEEChHHHHHHHHcCCccccc
Confidence 458999999998766555554321 345678888999987654322 233 3557888776432 23456666
Q ss_pred CCEEEEeC
Q psy15261 154 ADTVIFVD 161 (292)
Q Consensus 154 a~~vI~~d 161 (292)
.+.+|+=|
T Consensus 150 v~~lViDE 157 (456)
T PRK10590 150 VEILVLDE 157 (456)
T ss_pred ceEEEeec
Confidence 77666643
No 256
>PHA03050 glutaredoxin; Provisional
Probab=23.13 E-value=3.5e+02 Score=20.70 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=33.7
Q ss_pred CCCeEEEEeccHH-HHHHHHHHHhccCCC--CceEEEEECC-CCHHHHHHHHHHhcCCCCeeEEEeccc
Q psy15261 79 TQHRALIFCQLRA-MLDIVENDLFKCEMP--GVTYLRLDGS-VVSTARHAIVTKFNSDPTIDVLLLTTQ 143 (292)
Q Consensus 79 ~~~KvlIFsq~~~-~l~~l~~~L~~~~~~--~~~~~~i~G~-~~~~~R~~~v~~F~~~~~~~vlLlst~ 143 (292)
..++|+||+.... ......++|...... .+.+.-++-. .....|..+.+.-.. ..+..+++...
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~ 78 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKT 78 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCE
Confidence 4578999996554 467777777544332 2334444431 233445555555443 34444444433
No 257
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.05 E-value=3.9e+02 Score=25.44 Aligned_cols=79 Identities=20% Similarity=0.166 Sum_probs=50.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc-cCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK-CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~-~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~ 152 (292)
.+.++||.+.....+.-+.+.+.. ....++.+..+.|+.+...... ... .++.|+++++.... ..+++.
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~--~~~~IlV~TP~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLE--SGVDILIGTTGRLIDYAKQNHINLG 156 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc--CCCCEEEECHHHHHHHHHcCCcccc
Confidence 356899999999886655443322 1345788889999877544332 233 24678887775432 245677
Q ss_pred CCCEEEEeCC
Q psy15261 153 GADTVIFVDH 162 (292)
Q Consensus 153 ~a~~vI~~d~ 162 (292)
....+|+=|-
T Consensus 157 ~v~~lViDEa 166 (423)
T PRK04837 157 AIQVVVLDEA 166 (423)
T ss_pred cccEEEEecH
Confidence 7777776443
No 258
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=22.98 E-value=1.8e+02 Score=26.87 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
..++++++||+.-...-.+.-.|. ..|+. +..++|+.
T Consensus 267 ~~~~~iv~yC~sG~~A~~~~~~L~---~~G~~~v~~YdGs~ 304 (320)
T PLN02723 267 SLDSPIVASCGTGVTACILALGLH---RLGKTDVPVYDGSW 304 (320)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHH---HcCCCCeeEeCCCH
Confidence 467889999998665555555553 33553 66789985
No 259
>KOG0389|consensus
Probab=22.78 E-value=4.1e+02 Score=28.26 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=47.6
Q ss_pred EEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCC-CCeeEEEeccccccccc------CCCCCCE
Q psy15261 84 LIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD-PTIDVLLLTTQVGGLGL------NLTGADT 156 (292)
Q Consensus 84 lIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~-~~~~vlLlst~~~~~Gl------nL~~a~~ 156 (292)
||.+.....=.|+.+ +.+ =.|.+.+..++|+. .+|.++-.+++.+ +...|||.+...++.-- --..-++
T Consensus 452 LVVvPsSTleNWlrE-f~k-wCPsl~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~ 527 (941)
T KOG0389|consen 452 LVVVPSSTLENWLRE-FAK-WCPSLKVEPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNY 527 (941)
T ss_pred EEEecchhHHHHHHH-HHH-hCCceEEEeccCcH--HHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccE
Confidence 444443333334443 322 24789999999985 8999999999863 46788888877665221 1134566
Q ss_pred EEEeCCCC
Q psy15261 157 VIFVDHDW 164 (292)
Q Consensus 157 vI~~d~~w 164 (292)
||+=+-+.
T Consensus 528 viyDEgHm 535 (941)
T KOG0389|consen 528 VIYDEGHM 535 (941)
T ss_pred EEecchhh
Confidence 66655543
No 260
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=22.47 E-value=2.8e+02 Score=19.43 Aligned_cols=62 Identities=6% Similarity=0.090 Sum_probs=35.7
Q ss_pred CCCCCeEEEEeccH-HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccc
Q psy15261 77 ILTQHRALIFCQLR-AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ 143 (292)
Q Consensus 77 ~~~~~KvlIFsq~~-~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~ 143 (292)
+...++|.||+... .......+.|. ..|+.|..++=..... ...+... .....+.++++...
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~---~~gi~y~~idi~~~~~-~~~~~~~-~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLK---EKGYDFEEIPLGNDAR-GRSLRAV-TGATTVPQVFIGGK 66 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHH---HcCCCcEEEECCCChH-HHHHHHH-HCCCCcCeEEECCE
Confidence 35678899998654 34777777773 3478887777543322 2233332 22345556665433
No 261
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=22.41 E-value=1.2e+02 Score=22.14 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
...++++++|..-.........|.+.... .+..++|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~--~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAG--EAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCc--cEEEeeCCH
Confidence 45689999999866666666677443222 567788885
No 262
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.23 E-value=3.5e+02 Score=21.88 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHH
Q psy15261 43 LPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTAR 122 (292)
Q Consensus 43 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R 122 (292)
..++.++|...++. -.|++++|+........-+...|. ..+..+...|..+..
T Consensus 12 ~~a~~~ll~~~~~~---------------------~~gk~v~VvGrs~~vG~pla~lL~---~~gatV~~~~~~t~~--- 64 (140)
T cd05212 12 AKAVKELLNKEGVR---------------------LDGKKVLVVGRSGIVGAPLQCLLQ---RDGATVYSCDWKTIQ--- 64 (140)
T ss_pred HHHHHHHHHHcCCC---------------------CCCCEEEEECCCchHHHHHHHHHH---HCCCEEEEeCCCCcC---
Confidence 45678888876532 478999999999999999999994 357888888865532
Q ss_pred HHHHHHhcCCCCeeEEEeccccccccc---CCCCCCEEEEeCCCC
Q psy15261 123 HAIVTKFNSDPTIDVLLLTTQVGGLGL---NLTGADTVIFVDHDW 164 (292)
Q Consensus 123 ~~~v~~F~~~~~~~vlLlst~~~~~Gl---nL~~a~~vI~~d~~w 164 (292)
++..- ...++++..+.... -+ .+....+||-+.+..
T Consensus 65 ---l~~~v--~~ADIVvsAtg~~~-~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 65 ---LQSKV--HDADVVVVGSPKPE-KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred ---HHHHH--hhCCEEEEecCCCC-ccCHHHcCCCCEEEEcCCCc
Confidence 11111 13345555444331 12 234455666565554
No 263
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.20 E-value=72 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=27.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCc--eEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGV--TYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~--~~~~i~G~~~ 118 (292)
...++++|||+.-.........|.. .|+ .+..++|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~---~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKE---LGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHH---cCCccceeeecchHH
Confidence 4578899999886666667777743 466 5788899863
No 264
>PRK13555 azoreductase; Provisional
Probab=22.05 E-value=64 Score=28.01 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.5
Q ss_pred CCCCCEEEEeCCCCC---hhhHHHHhHhhhhcC
Q psy15261 151 LTGADTVIFVDHDWS---PMKDLQAMDRAHRIG 180 (292)
Q Consensus 151 L~~a~~vI~~d~~wn---p~~~~Qa~gR~~RiG 180 (292)
+..|+++|+.-|-|| |......++|+.|.|
T Consensus 87 ~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G 119 (208)
T PRK13555 87 FLEADKVVFAFPLWNFTVPAPLITYISYLSQAG 119 (208)
T ss_pred HHHcCEEEEEcCcccccchHHHHHHHHHHhcCC
Confidence 356889999999997 667778899999875
No 265
>PRK10638 glutaredoxin 3; Provisional
Probab=21.89 E-value=3e+02 Score=19.46 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=34.3
Q ss_pred eEEEEeccH-HHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 82 RALIFCQLR-AMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 82 KvlIFsq~~-~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
++.||+... .....+..+| ...++.|..++=......+..+.+ ......+.++++.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L---~~~gi~y~~~dv~~~~~~~~~l~~-~~g~~~vP~i~~~ 59 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALL---NSKGVSFQEIPIDGDAAKREEMIK-RSGRTTVPQIFID 59 (83)
T ss_pred cEEEEECCCChhHHHHHHHH---HHcCCCcEEEECCCCHHHHHHHHH-HhCCCCcCEEEEC
Confidence 577888443 4577788888 445788888776666555555443 3333445555544
No 266
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=21.72 E-value=3.8e+02 Score=22.04 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCC----ceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccc
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPG----VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ 143 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~----~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~ 143 (292)
...+.|.|.|......|.+.|......+ +.+.. ++.|+ +...+++|+++-
T Consensus 112 ~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~T-------------vd~~Q-G~E~diVi~s~v 165 (200)
T PF13087_consen 112 PSSIGIITPYRAQVALIRKALRSRYPSSPIKDIKVST-------------VDSFQ-GQEADIVIVSLV 165 (200)
T ss_dssp -GGEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEE-------------HHHHT-T--EEEEEEEE-
T ss_pred cCCceEEcCchHHHHHHHHHHhhhccccccceEEEec-------------HHHhc-cccceEEEEEec
Confidence 4689999999999999999996533332 44433 77888 445566666533
No 267
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=21.60 E-value=1.2e+02 Score=32.34 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=37.7
Q ss_pred CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc
Q psy15261 104 EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK 183 (292)
Q Consensus 104 ~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~ 183 (292)
..+|+.|+. |++... +.+|+...++.-|... +-+-+.-.||.||++|.+-..
T Consensus 328 TI~gIr~VI-DsG~ak------~~~y~~~~g~~~L~~~---------------------~ISqAsA~QRaGRAGR~~pGi 379 (845)
T COG1643 328 TIPGIRYVI-DSGLAK------EKRYDPRTGLTRLETE---------------------PISKASADQRAGRAGRTGPGI 379 (845)
T ss_pred eeCCeEEEe-cCCccc------ccccccccCceeeeEE---------------------EechhhhhhhccccccCCCce
Confidence 778988754 555543 4556654444333322 113445689999999999988
Q ss_pred eEEEEE
Q psy15261 184 VVNVYR 189 (292)
Q Consensus 184 ~V~Vy~ 189 (292)
..+.|.
T Consensus 380 cyRLys 385 (845)
T COG1643 380 CYRLYS 385 (845)
T ss_pred EEEecC
Confidence 888886
No 268
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=21.36 E-value=3e+02 Score=22.91 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhc
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFK 102 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~ 102 (292)
.+||-..+..++..+.-... ......+.++||-++....++.+...|.+
T Consensus 27 GTGKT~~l~~~i~~~~~~~~---------------~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 27 GTGKTTTLASIIAQLLQRFK---------------SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp TSSHHHHHHHHHHHH----------------------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHhccchh---------------hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56899999999888710000 00125789999999999999988888743
No 269
>KOG0701|consensus
Probab=21.19 E-value=82 Score=35.77 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=62.6
Q ss_pred EEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH-----------HHHHHHHHHhcCCCCeeEEEecccccccccCC
Q psy15261 83 ALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS-----------TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNL 151 (292)
Q Consensus 83 vlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~-----------~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL 151 (292)
.++|+......-.+...+....... +..++|.+.+ -.+...+.+|.. +.+.+ |+.+.+.-+|++.
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~-~~ln~-L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSND--PLFVTGASGANLWKSFKNELELRQAEVLRRFHF-HELNL-LIATSVLEEGVDV 370 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccC--cceeeccccCccchhhHHHHHhhhHHHHHHHhh-hhhhH-HHHHHHHHhhcch
Confidence 4677777666544444442222222 2225664432 124567777774 44555 4577888899999
Q ss_pred CCCCEEEEeCCCCChhhHHHHhHhhhhcC
Q psy15261 152 TGADTVIFVDHDWSPMKDLQAMDRAHRIG 180 (292)
Q Consensus 152 ~~a~~vI~~d~~wnp~~~~Qa~gR~~RiG 180 (292)
..|+-++.++.+-+...+.|+.||.-+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999887665
No 270
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=20.72 E-value=1.4e+02 Score=21.87 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=24.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
...+.+++||..-.........|.. .|+. +..++|++
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~---~G~~~v~~~~Gg~ 101 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARS---LGYENVGNYPGSW 101 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHH---cCCccceecCCcH
Confidence 3578899999886666666666733 3553 55567765
No 271
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=20.63 E-value=2.2e+02 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=26.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSV 117 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~ 117 (292)
...++||+|............|.. .|+ ++..++|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~---~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAA---LTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHH---cCCcCeEEecCcH
Confidence 457899999887666667767743 344 688899986
No 272
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=20.24 E-value=1.3e+02 Score=22.15 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSVV 118 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~~ 118 (292)
.+++++|||+.-.........|.+ .|+ .+..++|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~---~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLR---QGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHH---cCCccEEEecCCHH
Confidence 467899999886555566666643 355 4678888864
No 273
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=20.00 E-value=1.5e+02 Score=20.54 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=26.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.++.+++|+|............|...+ ...+..+.|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G--~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAG--GTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhC--cccEEEecCCh
Confidence 577899999988666777777774432 23455777775
Done!