Query psy15261
Match_columns 292
No_of_seqs 281 out of 2379
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:28:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 3E-43 1E-47 317.9 13.4 198 2-239 72-269 (271)
2 1z3i_X Similar to RAD54-like; 100.0 2.4E-37 8.3E-42 309.7 14.9 216 2-242 353-576 (644)
3 3mwy_W Chromo domain-containin 100.0 1.4E-37 4.8E-42 318.2 10.0 213 2-240 513-736 (800)
4 1z63_A Helicase of the SNF2/RA 100.0 1.5E-35 5.2E-40 287.0 10.7 198 2-239 301-498 (500)
5 3hgt_A HDA1 complex subunit 3; 100.0 2E-30 7E-35 237.2 13.7 168 2-205 73-248 (328)
6 1wp9_A ATP-dependent RNA helic 99.9 1.3E-23 4.3E-28 198.9 8.7 146 38-212 340-493 (494)
7 3dmq_A RNA polymerase-associat 99.9 9E-22 3.1E-26 204.9 13.7 150 35-212 483-633 (968)
8 2hjv_A ATP-dependent RNA helic 99.8 6.3E-21 2.2E-25 158.5 11.5 126 37-194 17-142 (163)
9 1t5i_A C_terminal domain of A 99.8 1.7E-20 5.8E-25 157.5 13.4 121 37-187 13-133 (172)
10 2jgn_A DBX, DDX3, ATP-dependen 99.8 7.9E-21 2.7E-25 161.5 10.2 127 37-194 27-153 (185)
11 2fwr_A DNA repair protein RAD2 99.8 4.1E-21 1.4E-25 184.3 6.0 139 38-211 332-471 (472)
12 1fuk_A Eukaryotic initiation f 99.8 1E-19 3.4E-24 151.4 12.2 123 42-196 17-139 (165)
13 4a2p_A RIG-I, retinoic acid in 99.8 3.5E-20 1.2E-24 180.1 10.6 162 39-231 370-540 (556)
14 2p6n_A ATP-dependent RNA helic 99.8 5.4E-20 1.9E-24 157.2 10.3 125 37-194 37-161 (191)
15 2rb4_A ATP-dependent RNA helic 99.8 9.3E-19 3.2E-23 146.9 12.4 123 41-195 20-148 (175)
16 3tbk_A RIG-I helicase domain; 99.8 2.3E-19 7.9E-24 173.8 9.8 151 39-216 369-528 (555)
17 4a2q_A RIG-I, retinoic acid in 99.8 2.7E-19 9.2E-24 182.8 10.8 161 39-230 611-780 (797)
18 3eaq_A Heat resistant RNA depe 99.8 1.1E-18 3.7E-23 151.3 12.5 125 38-194 14-138 (212)
19 2yjt_D ATP-dependent RNA helic 99.6 1.7E-20 5.9E-25 156.9 0.0 119 40-188 15-133 (170)
20 4a2w_A RIG-I, retinoic acid in 99.8 5.1E-19 1.7E-23 183.7 10.4 151 39-216 611-770 (936)
21 3i32_A Heat resistant RNA depe 99.7 2.7E-17 9.2E-22 150.1 12.6 126 38-195 11-136 (300)
22 1xti_A Probable ATP-dependent 99.7 1.6E-16 5.6E-21 147.5 12.7 122 37-188 232-353 (391)
23 2db3_A ATP-dependent RNA helic 99.7 3.9E-16 1.3E-20 148.8 13.2 123 37-192 283-405 (434)
24 2j0s_A ATP-dependent RNA helic 99.7 2.6E-16 8.8E-21 147.6 11.1 122 42-195 263-384 (410)
25 1s2m_A Putative ATP-dependent 99.7 3.3E-16 1.1E-20 146.2 11.7 127 37-195 240-366 (400)
26 1hv8_A Putative ATP-dependent 99.7 2E-16 6.9E-21 145.1 9.9 111 79-196 237-347 (367)
27 2i4i_A ATP-dependent RNA helic 99.7 2.7E-16 9.4E-21 147.4 10.8 127 37-194 257-383 (417)
28 4gl2_A Interferon-induced heli 99.7 1.2E-16 4.2E-21 160.2 8.5 151 39-216 379-541 (699)
29 2z0m_A 337AA long hypothetical 99.6 1.9E-16 6.4E-21 143.9 8.4 117 79-205 219-335 (337)
30 3pey_A ATP-dependent RNA helic 99.6 1.3E-15 4.4E-20 141.1 11.3 105 79-188 242-352 (395)
31 2ykg_A Probable ATP-dependent 99.6 4.9E-16 1.7E-20 155.7 8.8 135 39-199 378-521 (696)
32 3eiq_A Eukaryotic initiation f 99.6 8.4E-16 2.9E-20 143.7 8.2 122 41-194 266-387 (414)
33 2oca_A DAR protein, ATP-depend 99.6 1.8E-15 6.1E-20 146.4 10.1 133 40-199 330-463 (510)
34 3fht_A ATP-dependent RNA helic 99.6 6.1E-15 2.1E-19 137.6 13.4 118 40-187 251-374 (412)
35 1oyw_A RECQ helicase, ATP-depe 99.6 1.9E-14 6.6E-19 140.5 13.6 105 79-188 235-339 (523)
36 3sqw_A ATP-dependent RNA helic 99.5 4E-14 1.4E-18 139.5 14.2 109 78-188 286-394 (579)
37 3i5x_A ATP-dependent RNA helic 99.5 4.4E-14 1.5E-18 138.2 14.2 113 78-194 337-449 (563)
38 1fuu_A Yeast initiation factor 99.5 4.9E-16 1.7E-20 144.3 0.0 109 79-194 258-366 (394)
39 2v1x_A ATP-dependent DNA helic 99.5 3.7E-14 1.3E-18 140.5 12.0 105 79-188 266-370 (591)
40 3h1t_A Type I site-specific re 99.5 4.7E-14 1.6E-18 139.1 9.6 112 79-191 438-558 (590)
41 3oiy_A Reverse gyrase helicase 99.5 2.7E-13 9.3E-18 127.6 13.8 117 39-191 237-362 (414)
42 3fmp_B ATP-dependent RNA helic 99.4 2.2E-14 7.6E-19 137.7 0.0 104 79-187 332-441 (479)
43 1c4o_A DNA nucleotide excision 99.4 3.2E-12 1.1E-16 128.2 13.8 110 78-195 437-551 (664)
44 3fho_A ATP-dependent RNA helic 99.4 1.4E-13 4.8E-18 133.7 2.3 105 79-188 356-466 (508)
45 2xgj_A ATP-dependent RNA helic 99.3 9E-12 3.1E-16 130.1 13.4 115 79-195 342-500 (1010)
46 2d7d_A Uvrabc system protein B 99.3 6.7E-12 2.3E-16 125.8 12.0 110 78-195 443-557 (661)
47 1tf5_A Preprotein translocase 99.3 4E-12 1.4E-16 128.7 8.8 120 39-188 414-541 (844)
48 2eyq_A TRCF, transcription-rep 99.3 7.6E-12 2.6E-16 132.3 11.1 112 78-194 810-922 (1151)
49 3jux_A Protein translocase sub 99.3 1.3E-11 4.3E-16 123.2 10.2 120 39-188 456-583 (822)
50 2va8_A SSO2462, SKI2-type heli 99.2 4E-11 1.4E-15 120.8 13.1 116 78-195 250-409 (715)
51 3l9o_A ATP-dependent RNA helic 99.2 2E-11 6.7E-16 128.6 10.3 120 79-200 440-603 (1108)
52 2zj8_A DNA helicase, putative 99.2 5.6E-11 1.9E-15 119.9 11.6 119 79-199 236-392 (720)
53 2fsf_A Preprotein translocase 99.2 3.5E-11 1.2E-15 121.7 9.3 121 38-188 422-579 (853)
54 2p6r_A Afuhel308 helicase; pro 99.2 3E-11 1E-15 121.6 8.4 118 79-198 241-392 (702)
55 3rc3_A ATP-dependent RNA helic 99.2 4.8E-11 1.7E-15 119.6 9.6 108 81-193 321-444 (677)
56 4a4z_A Antiviral helicase SKI2 99.1 1.8E-10 6.2E-15 120.2 12.4 120 79-201 335-499 (997)
57 1gku_B Reverse gyrase, TOP-RG; 99.1 1.4E-10 4.9E-15 121.7 11.2 74 80-163 275-352 (1054)
58 1nkt_A Preprotein translocase 99.1 1.2E-10 4.1E-15 118.2 9.1 120 39-188 442-613 (922)
59 2jlq_A Serine protease subunit 99.1 1.6E-10 5.4E-15 110.7 9.3 97 80-186 188-305 (451)
60 1yks_A Genome polyprotein [con 99.1 4.8E-11 1.7E-15 114.0 5.7 99 79-187 176-294 (440)
61 1gm5_A RECG; helicase, replica 99.1 2.1E-11 7.3E-16 124.0 3.4 109 78-188 576-693 (780)
62 2z83_A Helicase/nucleoside tri 99.1 5.7E-11 1.9E-15 114.0 5.0 104 80-194 190-313 (459)
63 4ddu_A Reverse gyrase; topoiso 99.1 2.3E-10 7.8E-15 120.5 9.3 89 40-164 295-388 (1104)
64 2wv9_A Flavivirin protease NS2 99.1 2.3E-10 7.9E-15 114.8 8.9 99 79-187 409-528 (673)
65 2xau_A PRE-mRNA-splicing facto 99.0 2.1E-10 7.2E-15 116.8 7.4 114 79-196 302-445 (773)
66 2v6i_A RNA helicase; membrane, 99.0 5.4E-10 1.8E-14 106.4 7.5 99 80-188 171-287 (431)
67 2whx_A Serine protease/ntpase/ 99.0 5.9E-10 2E-14 110.8 7.1 103 79-192 354-476 (618)
68 3o8b_A HCV NS3 protease/helica 98.9 2E-09 6.7E-14 107.4 7.8 102 78-196 394-516 (666)
69 4f92_B U5 small nuclear ribonu 98.3 1.1E-06 3.7E-11 96.2 8.1 116 79-196 316-475 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.2 4.3E-06 1.5E-10 87.4 11.2 111 79-192 536-707 (1038)
71 4f92_B U5 small nuclear ribonu 98.2 2.1E-06 7E-11 94.1 8.8 114 78-193 1153-1307(1724)
72 2vl7_A XPD; helicase, unknown 97.1 0.0015 5.2E-08 63.5 9.2 79 79-167 383-466 (540)
73 2ipc_A Preprotein translocase 96.3 0.0063 2.2E-07 62.3 7.5 33 156-188 662-694 (997)
74 4a15_A XPD helicase, ATP-depen 94.4 0.19 6.5E-06 49.6 10.3 78 80-165 448-528 (620)
75 1gm5_A RECG; helicase, replica 85.1 2.4 8.1E-05 42.9 8.4 84 79-163 416-500 (780)
76 3oiy_A Reverse gyrase helicase 80.7 4.8 0.00017 36.6 8.1 84 78-162 62-148 (414)
77 3crv_A XPD/RAD3 related DNA he 78.0 12 0.00042 35.8 10.3 78 79-167 392-476 (551)
78 4ddu_A Reverse gyrase; topoiso 75.2 7.4 0.00025 40.9 8.3 104 35-162 99-205 (1104)
79 2l82_A Designed protein OR32; 73.6 12 0.0004 28.2 6.8 52 82-137 4-55 (162)
80 2eyq_A TRCF, transcription-rep 71.6 18 0.00062 38.1 10.3 84 78-162 650-734 (1151)
81 3ipz_A Monothiol glutaredoxin- 67.6 15 0.00051 26.9 6.5 59 79-141 16-80 (109)
82 3zyw_A Glutaredoxin-3; metal b 65.3 16 0.00055 27.0 6.2 59 79-141 14-78 (111)
83 2oxc_A Probable ATP-dependent 63.3 49 0.0017 27.0 9.7 99 35-160 67-173 (230)
84 3iuy_A Probable ATP-dependent 61.8 17 0.00058 29.8 6.4 78 79-161 93-175 (228)
85 3gx8_A Monothiol glutaredoxin- 60.2 20 0.00069 26.9 6.0 59 79-141 14-81 (121)
86 3sxu_A DNA polymerase III subu 58.8 33 0.0011 27.0 7.3 83 42-164 24-106 (150)
87 1wp9_A ATP-dependent RNA helic 58.5 25 0.00086 31.6 7.5 103 33-163 27-135 (494)
88 2wul_A Glutaredoxin related pr 57.9 40 0.0014 25.4 7.3 63 81-146 20-89 (118)
89 2wem_A Glutaredoxin-related pr 57.3 43 0.0015 25.0 7.4 59 80-142 19-84 (118)
90 1u6t_A SH3 domain-binding glut 57.3 15 0.0005 28.1 4.7 45 83-130 2-53 (121)
91 1t6n_A Probable ATP-dependent 56.1 66 0.0023 25.8 9.2 80 80-163 82-168 (220)
92 1gku_B Reverse gyrase, TOP-RG; 53.2 32 0.0011 35.8 8.0 99 35-159 77-181 (1054)
93 3h5i_A Response regulator/sens 52.2 64 0.0022 23.6 7.8 20 81-100 6-25 (140)
94 2yan_A Glutaredoxin-3; oxidore 49.2 36 0.0012 24.3 5.7 58 80-141 16-79 (105)
95 3ber_A Probable ATP-dependent 47.4 1.1E+02 0.0037 25.4 9.3 79 79-162 110-195 (249)
96 3i42_A Response regulator rece 47.0 19 0.00063 26.0 3.8 92 81-181 28-124 (127)
97 1wik_A Thioredoxin-like protei 46.7 44 0.0015 24.1 5.9 59 79-141 13-77 (109)
98 2lqo_A Putative glutaredoxin R 46.4 50 0.0017 23.5 5.9 57 81-140 4-61 (92)
99 1xti_A Probable ATP-dependent 46.3 97 0.0033 27.0 9.2 79 79-161 75-160 (391)
100 1qde_A EIF4A, translation init 45.6 73 0.0025 25.6 7.7 102 34-162 56-164 (224)
101 2wci_A Glutaredoxin-4; redox-a 45.1 47 0.0016 25.5 6.0 58 80-141 34-97 (135)
102 3g5j_A Putative ATP/GTP bindin 44.0 14 0.00047 27.5 2.7 37 79-118 87-125 (134)
103 2j48_A Two-component sensor ki 43.2 22 0.00074 24.8 3.6 28 81-111 2-29 (119)
104 2q5c_A NTRC family transcripti 42.7 38 0.0013 27.7 5.4 93 80-182 4-96 (196)
105 3gk5_A Uncharacterized rhodane 42.5 24 0.00081 25.6 3.8 37 78-117 53-89 (108)
106 2yv2_A Succinyl-COA synthetase 41.3 1.2E+02 0.0042 26.3 8.9 92 78-190 149-242 (297)
107 1oi7_A Succinyl-COA synthetase 41.2 99 0.0034 26.8 8.2 68 78-146 142-211 (288)
108 3foj_A Uncharacterized protein 40.2 27 0.00094 24.7 3.7 37 78-117 54-90 (100)
109 2qvg_A Two component response 39.9 94 0.0032 22.4 7.0 24 79-102 6-29 (143)
110 2csu_A 457AA long hypothetical 39.5 84 0.0029 29.3 7.9 88 81-190 150-237 (457)
111 2gxq_A Heat resistant RNA depe 39.0 1.4E+02 0.0047 23.4 10.1 105 34-162 43-153 (207)
112 1k68_A Phytochrome response re 38.6 39 0.0013 24.3 4.5 56 80-144 2-65 (140)
113 3fe2_A Probable ATP-dependent 38.6 83 0.0028 25.8 7.1 79 79-162 101-185 (242)
114 3eqz_A Response regulator; str 38.3 1E+02 0.0036 21.8 8.3 22 80-101 3-24 (135)
115 3lte_A Response regulator; str 37.9 46 0.0016 23.9 4.8 57 78-144 4-60 (132)
116 2nu8_A Succinyl-COA ligase [AD 37.7 1.2E+02 0.0041 26.2 8.2 91 78-190 142-234 (288)
117 2pl3_A Probable ATP-dependent 36.0 1.1E+02 0.0038 24.8 7.4 77 79-161 96-179 (236)
118 3eme_A Rhodanese-like domain p 35.9 29 0.00099 24.7 3.2 37 78-117 54-90 (103)
119 3iwh_A Rhodanese-like domain p 35.6 24 0.00083 25.6 2.8 37 78-117 54-90 (103)
120 2yv1_A Succinyl-COA ligase [AD 35.4 1.2E+02 0.0043 26.3 7.9 68 78-146 148-217 (294)
121 3nhm_A Response regulator; pro 34.7 1.2E+02 0.0041 21.5 7.4 90 81-179 28-122 (133)
122 4dad_A Putative pilus assembly 34.6 1.3E+02 0.0045 21.8 8.2 24 78-101 18-41 (146)
123 1t1v_A SH3BGRL3, SH3 domain-bi 34.6 65 0.0022 22.3 5.0 57 82-141 3-67 (93)
124 2ct6_A SH3 domain-binding glut 34.6 84 0.0029 22.8 5.8 48 79-129 6-60 (111)
125 3cnb_A DNA-binding response re 34.2 91 0.0031 22.4 6.1 30 78-109 6-35 (143)
126 2gkg_A Response regulator homo 34.0 1E+02 0.0036 21.4 6.2 19 82-100 7-25 (127)
127 3a10_A Response regulator; pho 33.6 1.2E+02 0.004 20.9 6.6 18 160-177 98-115 (116)
128 1vec_A ATP-dependent RNA helic 33.2 1.7E+02 0.0059 22.8 8.6 79 79-162 70-155 (206)
129 1k66_A Phytochrome response re 32.9 64 0.0022 23.5 5.0 24 79-102 5-28 (149)
130 3mwd_B ATP-citrate synthase; A 32.2 2.2E+02 0.0074 25.4 9.0 68 78-146 166-235 (334)
131 3grc_A Sensor protein, kinase; 31.9 1.4E+02 0.0048 21.4 7.5 19 160-178 108-126 (140)
132 2fp4_A Succinyl-COA ligase [GD 31.0 1.5E+02 0.0052 25.9 7.8 68 78-146 150-219 (305)
133 1wrb_A DJVLGB; RNA helicase, D 29.9 1.9E+02 0.0065 23.6 8.0 79 79-162 99-183 (253)
134 1oyw_A RECQ helicase, ATP-depe 29.9 79 0.0027 29.8 6.1 62 80-145 65-126 (523)
135 3qmx_A Glutaredoxin A, glutare 29.3 1.2E+02 0.0041 21.4 5.7 61 78-141 13-74 (99)
136 2v1x_A ATP-dependent DNA helic 28.5 74 0.0025 30.7 5.7 62 80-144 84-146 (591)
137 1fuu_A Yeast initiation factor 27.8 2.9E+02 0.01 23.8 9.7 101 34-161 63-170 (394)
138 1wv9_A Rhodanese homolog TT165 27.8 33 0.0011 24.0 2.3 37 78-118 52-88 (94)
139 3nhv_A BH2092 protein; alpha-b 27.8 38 0.0013 26.0 2.8 38 77-117 69-108 (144)
140 1uar_A Rhodanese; sulfurtransf 27.0 97 0.0033 26.3 5.7 38 78-117 231-269 (285)
141 3f6p_A Transcriptional regulat 25.9 1.4E+02 0.0047 20.9 5.6 34 108-141 47-80 (120)
142 3heb_A Response regulator rece 25.9 84 0.0029 23.2 4.6 16 163-178 119-134 (152)
143 3ilh_A Two component response 25.6 1.3E+02 0.0046 21.5 5.6 23 79-101 8-30 (146)
144 3hix_A ALR3790 protein; rhodan 25.4 33 0.0011 24.7 1.9 37 78-117 50-87 (106)
145 3b6e_A Interferon-induced heli 25.1 40 0.0014 26.8 2.6 62 79-145 81-143 (216)
146 3cg4_A Response regulator rece 25.1 1.9E+02 0.0065 20.6 9.3 56 79-144 6-61 (142)
147 2jtq_A Phage shock protein E; 25.0 1E+02 0.0036 20.7 4.6 37 78-117 39-75 (85)
148 3hdv_A Response regulator; PSI 24.7 1.1E+02 0.0039 21.8 5.0 21 80-100 7-27 (136)
149 3ly5_A ATP-dependent RNA helic 24.7 3E+02 0.01 22.8 8.8 78 79-161 125-209 (262)
150 3flh_A Uncharacterized protein 24.4 39 0.0013 25.1 2.2 37 78-117 69-107 (124)
151 2z0m_A 337AA long hypothetical 23.9 2.8E+02 0.0096 23.2 8.2 97 33-161 35-137 (337)
152 1q0u_A Bstdead; DEAD protein, 22.8 93 0.0032 25.0 4.5 99 35-159 47-156 (219)
153 2k0z_A Uncharacterized protein 22.5 65 0.0022 23.2 3.2 38 78-118 54-91 (110)
154 2qxy_A Response regulator; reg 22.3 1.6E+02 0.0055 21.1 5.5 54 79-142 3-56 (142)
155 1hmj_A RPB5, protein (subunit 22.2 86 0.003 21.9 3.5 64 114-195 12-77 (78)
156 1s2m_A Putative ATP-dependent 22.0 3.9E+02 0.013 23.1 10.1 79 79-162 88-172 (400)
157 3kht_A Response regulator; PSI 22.0 1.5E+02 0.005 21.5 5.2 58 79-144 4-61 (144)
158 2fsx_A RV0390, COG0607: rhodan 21.4 41 0.0014 25.7 1.9 38 78-118 78-116 (148)
159 3h5i_A Response regulator/sens 21.0 85 0.0029 22.8 3.7 93 80-178 29-123 (140)
160 1gmx_A GLPE protein; transfera 20.9 66 0.0023 22.9 2.9 38 78-118 56-94 (108)
161 1tq1_A AT5G66040, senescence-a 20.2 40 0.0014 25.2 1.5 38 78-118 80-118 (129)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3e-43 Score=317.94 Aligned_cols=198 Identities=30% Similarity=0.451 Sum_probs=167.1
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
|+.||++||||+|+.+.. ..+..|+|+.+|.++|.++. ..++
T Consensus 72 l~~Lrq~~~hP~l~~~~~---------------~~~~~s~K~~~L~~ll~~~~-----------------------~~~~ 113 (271)
T 1z5z_A 72 LLKLKQIVDHPALLKGGE---------------QSVRRSGKMIRTMEIIEEAL-----------------------DEGD 113 (271)
T ss_dssp HHHHHHHTTCTHHHHCSC---------------CCSTTCHHHHHHHHHHHHHH-----------------------HTTC
T ss_pred HHHHHHHcCCHHHhcCCc---------------cccccCHHHHHHHHHHHHHH-----------------------hCCC
Confidence 689999999999986321 23567899999999999872 4689
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeC
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 161 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d 161 (292)
|+||||++..+++.|...|... .|+.+..++|+++..+|++++++|+.++.++|+|++|+++|+|+||+.|++||+||
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~~--~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d 191 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 191 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHHH--HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECS
T ss_pred eEEEEeccHHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEEC
Confidence 9999999999999999999431 27889999999999999999999998778889999999999999999999999999
Q ss_pred CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhccCCC
Q psy15261 162 HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ 239 (292)
Q Consensus 162 ~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~~~~~ 239 (292)
+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..+++.++++++.....++.+++.+||.++.+
T Consensus 192 ~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 192 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 269 (271)
T ss_dssp CCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHSCCCT
T ss_pred CCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchhhhcCCHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999988888889999999999998754
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-37 Score=309.66 Aligned_cols=216 Identities=29% Similarity=0.499 Sum_probs=181.4
Q ss_pred HHHHHhhcCCCcCcCCCCh---hhHHHhhc----CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSH---AQYEALVS----RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPP 74 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~---~~~~~~~~----~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 74 (292)
++.||++||||.++..... +.+..... ...........|+|+..|..++..+.
T Consensus 353 l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~-------------------- 412 (644)
T 1z3i_X 353 ITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR-------------------- 412 (644)
T ss_dssp HHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh--------------------
Confidence 6889999999999753110 00000000 00011123457999999999998762
Q ss_pred CCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCC
Q psy15261 75 PSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTG 153 (292)
Q Consensus 75 ~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~ 153 (292)
...++|+||||++..+++.|+..|.. .|+.+.++||+++..+|++++++|++++. ..++|+++++||+||||++
T Consensus 413 --~~~~~k~lIFs~~~~~~~~l~~~l~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 413 --TTTSDKVVLVSNYTQTLDLFEKLCRN---RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp --HHCCCEEEEEESCHHHHHHHHHHHHH---HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred --hcCCCEEEEEEccHHHHHHHHHHHHH---CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 12579999999999999999999944 58999999999999999999999997554 3589999999999999999
Q ss_pred CCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHh
Q psy15261 154 ADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDL 233 (292)
Q Consensus 154 a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dl 233 (292)
|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..+++.+++.+......++.+++.+|
T Consensus 488 a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~L 567 (644)
T 1z3i_X 488 ANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELREL 567 (644)
T ss_dssp EEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHH
T ss_pred CCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877889999999999
Q ss_pred hccCCCCcc
Q psy15261 234 FCLDGQDSR 242 (292)
Q Consensus 234 f~~~~~~~~ 242 (292)
|.++.+...
T Consensus 568 f~~~~~~~~ 576 (644)
T 1z3i_X 568 FSLNEKTLS 576 (644)
T ss_dssp TCCCSSCSC
T ss_pred hCCCCCccc
Confidence 999876533
No 3
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=318.22 Aligned_cols=213 Identities=36% Similarity=0.544 Sum_probs=172.2
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCC--C--CCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRP--G--LNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~--~--~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (292)
++.||++|+||+|+............... . ..-..+..|+|+..|.++|..+.
T Consensus 513 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~----------------------- 569 (800)
T 3mwy_W 513 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK----------------------- 569 (800)
T ss_dssp HHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh-----------------------
Confidence 67899999999998643211110000000 0 00123567999999999999984
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCCCCCE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
..++|+||||++..++++|+.+|. ..|+.+.+++|+++..+|++++++|+.++ ...|+|++|++||+||||+.|++
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~---~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~ 646 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLS---IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADT 646 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHH---HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCE
T ss_pred hCCCeEEEEechHHHHHHHHHHHH---hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccce
Confidence 578999999999999999999994 45899999999999999999999999743 45589999999999999999999
Q ss_pred EEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccc------cccCChHHH
Q psy15261 157 VIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRN------LDTMATGKI 230 (292)
Q Consensus 157 vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~------~~~~~~~el 230 (292)
||+||++|||..+.||+||+||+||+++|+||+|++++|+|++|++++..|..+.+++++.+... ...++.+++
T Consensus 647 VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el 726 (800)
T 3mwy_W 647 VVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGEL 726 (800)
T ss_dssp EEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHH
T ss_pred EEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988754322 246788999
Q ss_pred HHhhccCCCC
Q psy15261 231 LDLFCLDGQD 240 (292)
Q Consensus 231 ~dlf~~~~~~ 240 (292)
.+|+.++...
T Consensus 727 ~~ll~~g~~~ 736 (800)
T 3mwy_W 727 SAILKFGAGN 736 (800)
T ss_dssp HHHHSSCSSS
T ss_pred HHHHHcchHh
Confidence 9999887754
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-35 Score=287.00 Aligned_cols=198 Identities=30% Similarity=0.451 Sum_probs=175.6
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
++.||++|+||.++.... ..+..++|+..|.++|.++. ..++
T Consensus 301 l~~lr~~~~~p~l~~~~~---------------~~~~~s~K~~~l~~~l~~~~-----------------------~~~~ 342 (500)
T 1z63_A 301 LLKLKQIVDHPALLKGGE---------------QSVRRSGKMIRTMEIIEEAL-----------------------DEGD 342 (500)
T ss_dssp HHHHHHHTTCTHHHHCSC---------------CCSTTCHHHHHHHHHHHHHH-----------------------TTTC
T ss_pred HHHHHHHhCCHHHhcCcc---------------chhhcchhHHHHHHHHHHHH-----------------------ccCC
Confidence 578999999999876321 23567899999999999873 5789
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeC
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 161 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d 161 (292)
|+||||++..+++.+...|... .++.+..++|+++..+|++++++|++++.+.++|++++++++|+|++.|++||++|
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH--HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred cEEEEEehHHHHHHHHHHHHHh--hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 9999999999999999999432 26788999999999999999999998767888999999999999999999999999
Q ss_pred CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhccCCC
Q psy15261 162 HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ 239 (292)
Q Consensus 162 ~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~~~~~ 239 (292)
++|||..+.||+||+||+||+++|+||+|++++|+|++|++++..|..+++.++++++.....++.+++.+||.++.+
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999998888899999999999998654
No 5
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=2e-30 Score=237.17 Aligned_cols=168 Identities=19% Similarity=0.197 Sum_probs=126.2
Q ss_pred HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH 81 (292)
Q Consensus 2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (292)
++.||||||||+|+.+.-.|... ......-+.++.|+|+..|.+||..+. ..++
T Consensus 73 i~qLRkicnHP~L~~d~~~p~~~---~~~~~~~~l~~~SGKf~~L~~LL~~l~-----------------------~~~~ 126 (328)
T 3hgt_A 73 CLNGSLVATHPYLLIDHYMPKSL---ITRDVPAHLAENSGKFSVLRDLINLVQ-----------------------EYET 126 (328)
T ss_dssp HHHHHHHHHCGGGTCCTTCCSCS---CSTTHHHHHHHTCHHHHHHHHHHHHHT-----------------------TSCE
T ss_pred HHHHHHHcCChhhhccccCCccc---cccchhhHHHHcCccHHHHHHHHHHHH-----------------------hCCC
Confidence 67899999999999632111000 000001135778999999999999984 6789
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccC-----CCCCCE
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN-----LTGADT 156 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gln-----L~~a~~ 156 (292)
|||||||+..++|+|+.+| ...++.|++++|+....+ .+. ...++.++|+ +.+||.|+| ++.|+.
T Consensus 127 kVLIfsq~t~~LDilE~~l---~~~~~~y~RlDG~~~~~~-~k~-----~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~ 196 (328)
T 3hgt_A 127 ETAIVCRPGRTMDLLEALL---LGNKVHIKRYDGHSIKSA-AAA-----NDFSCTVHLF-SSEGINFTKYPIKSKARFDM 196 (328)
T ss_dssp EEEEEECSTHHHHHHHHHH---TTSSCEEEESSSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSE
T ss_pred EEEEEECChhHHHHHHHHH---hcCCCceEeCCCCchhhh-hhc-----ccCCceEEEE-ECCCCCCcCcccccCCCCCE
Confidence 9999999999999999999 667999999999965432 221 1345777776 567777776 899999
Q ss_pred EEEeCCCCChhhH-HHHhHhhhhc--CCcceEEEEEEEeCCCHHHHHHHHHH
Q psy15261 157 VIFVDHDWSPMKD-LQAMDRAHRI--GQKKVVNVYRLITKNTLEEKIMNLQK 205 (292)
Q Consensus 157 vI~~d~~wnp~~~-~Qa~gR~~Ri--GQ~~~V~Vy~lv~~~TvEe~i~~~~~ 205 (292)
||.||++|||..+ .||+.|+||+ ||++.|.||||++.+|+|+.++..-+
T Consensus 197 VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 197 LICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred EEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 9999999999998 9999999999 68899999999999999999998744
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=1.3e-23 Score=198.90 Aligned_cols=146 Identities=23% Similarity=0.301 Sum_probs=122.1
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEEC--
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG-- 115 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G-- 115 (292)
..++|+..|.++|.+... ...++|+||||++..+++.+.+.|.. .++.+..+||
T Consensus 340 ~~~~k~~~l~~~l~~~~~---------------------~~~~~k~lVF~~~~~~~~~l~~~L~~---~~~~~~~~~g~~ 395 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQ---------------------RKQNSKIIVFTNYRETAKKIVNELVK---DGIKAKRFVGQA 395 (494)
T ss_dssp CSCHHHHHHHHHHHHHHH---------------------HCTTCCEEEECSCHHHHHHHHHHHHH---TTCCEEEECCSS
T ss_pred CCChHHHHHHHHHHHHhc---------------------cCCCCeEEEEEccHHHHHHHHHHHHH---cCCCcEEEeccc
Confidence 578899999999988510 03578999999999999999999954 4899999999
Q ss_pred ------CCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 116 ------SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 116 ------~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
+++..+|.+++++|++ +.+.| |++|+++++|+|++.|++||++|++|||..+.||+||+||.|| +.+|+
T Consensus 396 ~~~~~~~~~~~~r~~~~~~F~~-~~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~ 470 (494)
T 1wp9_A 396 SKENDRGLSQREQKLILDEFAR-GEFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVII 470 (494)
T ss_dssp CC-------CCHHHHHHHHHHH-TSCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEE
T ss_pred cccccccCCHHHHHHHHHHHhc-CCceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEE
Confidence 8999999999999995 44666 5577999999999999999999999999999999999999998 89999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHH
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTAN 212 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~ 212 (292)
|++++|+|++++.++..|..+++
T Consensus 471 l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 471 LMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp EEETTSHHHHHHHHCC-------
T ss_pred EEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999998887653
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=9e-22 Score=204.90 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=134.7
Q ss_pred ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEE
Q psy15261 35 SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114 (292)
Q Consensus 35 ~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~ 114 (292)
..+..++|+.+|.+++... .+.|+||||++..+++.+...|.. ..|+++..+|
T Consensus 483 ~~~~~~~K~~~L~~ll~~~-------------------------~~~k~iVF~~~~~~~~~l~~~L~~--~~g~~~~~lh 535 (968)
T 3dmq_A 483 TWWNFDPRVEWLMGYLTSH-------------------------RSQKVLVICAKAATALQLEQVLRE--REGIRAAVFH 535 (968)
T ss_dssp CTTTTSHHHHHHHHHHHHT-------------------------SSSCCCEECSSTHHHHHHHHHHHT--TTCCCEEEEC
T ss_pred cccCccHHHHHHHHHHHhC-------------------------CCCCEEEEeCcHHHHHHHHHHHHH--HcCCcEEEEe
Confidence 3466788999999999883 578999999999999999999942 3489999999
Q ss_pred CCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 115 GSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 115 G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
|+++..+|.+++++|+.+. .++|| ++|+++++|+|++.|++||+||+||||..+.|++||++|+||++.|.||+++..
T Consensus 536 G~~~~~~R~~~l~~F~~g~~~~~vL-vaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 536 EGMSIIERDRAAAWFAEEDTGAQVL-LCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp TTSCTTHHHHHHHHHHSTTSSCEEE-ECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred CCCCHHHHHHHHHHHhCCCCcccEE-EecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 9999999999999999754 35555 577999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy15261 194 NTLEEKIMNLQKFKLLTAN 212 (292)
Q Consensus 194 ~TvEe~i~~~~~~K~~~~~ 212 (292)
+|+|++|++.+..|..++.
T Consensus 615 ~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 615 KTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp TSHHHHHHHHHHHTTCCSS
T ss_pred ChHHHHHHHHHHhCCCcee
Confidence 9999999999988876543
No 8
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.84 E-value=6.3e-21 Score=158.48 Aligned_cols=126 Identities=21% Similarity=0.366 Sum_probs=109.5
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+..+.|+..|.++|... .+.|+||||++...++.+...|.. .++.+..+||+
T Consensus 17 ~~~~~K~~~L~~ll~~~-------------------------~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~hg~ 68 (163)
T 2hjv_A 17 VREENKFSLLKDVLMTE-------------------------NPDSCIIFCRTKEHVNQLTDELDD---LGYPCDKIHGG 68 (163)
T ss_dssp CCGGGHHHHHHHHHHHH-------------------------CCSSEEEECSSHHHHHHHHHHHHH---TTCCEEEECTT
T ss_pred CChHHHHHHHHHHHHhc-------------------------CCCcEEEEECCHHHHHHHHHHHHH---cCCcEEEEeCC
Confidence 44577999999999885 467999999999999999999944 48899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+++.+|..++++|+. +.++|| ++|+++++|+|++.+++||++|+||++..+.|++||++|.|+...+. .|+...
T Consensus 69 ~~~~~r~~~~~~f~~-g~~~vl-v~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~ 142 (163)
T 2hjv_A 69 MIQEDRFDVMNEFKR-GEYRYL-VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI--SFVTAF 142 (163)
T ss_dssp SCHHHHHHHHHHHHT-TSCSEE-EECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEE--EEECGG
T ss_pred CCHHHHHHHHHHHHc-CCCeEE-EECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEE--EEecHH
Confidence 999999999999995 556665 47799999999999999999999999999999999999999876554 445543
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=1.7e-20 Score=157.48 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=107.2
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+..+.|+..|.++|... .+.|+||||++...++.+...|.. .++.+..+||+
T Consensus 13 ~~~~~K~~~L~~ll~~~-------------------------~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~hg~ 64 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL-------------------------EFNQVVIFVKSVQRCIALAQLLVE---QNFPAIAIHRG 64 (172)
T ss_dssp CCGGGHHHHHHHHHHHS-------------------------CCSSEEEECSSHHHHHHHHHHHHH---TTCCEEEECTT
T ss_pred CChHHHHHHHHHHHHhC-------------------------CCCcEEEEECCHHHHHHHHHHHHh---cCCCEEEEECC
Confidence 34567999999999885 467999999999999999999944 48899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEE
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+++.+|..++++|++ +.+.||+ +|+++++|+|++.+++||+||+||++..+.|++||++|.|+...+.+
T Consensus 65 ~~~~~r~~~~~~f~~-g~~~vLv-aT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 65 MPQEERLSRYQQFKD-FQRRILV-ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp SCHHHHHHHHHHHHT-TSCSEEE-ESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred CCHHHHHHHHHHHHC-CCCcEEE-ECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 999999999999994 5666655 67999999999999999999999999999999999999998765544
No 10
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.83 E-value=7.9e-21 Score=161.51 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=96.2
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+..+.|+..|.++|... ..+.|+||||++...++.+...|.. .++.+..+||+
T Consensus 27 v~~~~K~~~L~~ll~~~------------------------~~~~k~lVF~~~~~~~~~l~~~L~~---~g~~~~~lhg~ 79 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNAT------------------------GKDSLTLVFVETKKGADSLEDFLYH---EGYACTSIHGD 79 (185)
T ss_dssp CCGGGHHHHHHHHHHHC-------------------------CCSCEEEEESCHHHHHHHHHHHHH---TTCCEEEEC--
T ss_pred eCcHHHHHHHHHHHHhc------------------------CCCCeEEEEECCHHHHHHHHHHHHH---cCCceEEEeCC
Confidence 45678999999999885 2578999999999999999999944 58899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+++.+|..++++|+. +.++||+ +|+++++|+|++.+++||++|+||++..+.||+||++|.|++..+ +.|++..
T Consensus 80 ~~~~~r~~~~~~f~~-g~~~vLv-aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 153 (185)
T 2jgn_A 80 RSQRDREEALHQFRS-GKSPILV-ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 153 (185)
T ss_dssp ------CHHHHHHHH-TSSSEEE-EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEEECGG
T ss_pred CCHHHHHHHHHHHHc-CCCeEEE-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEEEchh
Confidence 999999999999994 5566654 779999999999999999999999999999999999999987554 4455543
No 11
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.82 E-value=4.1e-21 Score=184.34 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=112.3
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..++|+..|.++|... .++|+||||++...++.+.+.| . +..++|++
T Consensus 332 ~~~~k~~~l~~~l~~~-------------------------~~~k~lvF~~~~~~~~~l~~~l---~-----~~~~~g~~ 378 (472)
T 2fwr_A 332 NSKNKIRKLREILERH-------------------------RKDKIIIFTRHNELVYRISKVF---L-----IPAITHRT 378 (472)
T ss_dssp SCSHHHHHHHHHHHHT-------------------------SSSCBCCBCSCHHHHHHHHHHT---T-----CCBCCSSS
T ss_pred cChHHHHHHHHHHHhC-------------------------CCCcEEEEECCHHHHHHHHHHh---C-----cceeeCCC
Confidence 4567999999999873 5789999999999999999988 2 34689999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCc-ceEEEEEEEeCCCH
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK-KVVNVYRLITKNTL 196 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~~~Tv 196 (292)
+..+|++++++|++ +.++|| ++|+++++|+|++.+++||+++++|||..+.|++||++|.||. +.|.+|.|++++|+
T Consensus 379 ~~~~R~~~~~~F~~-g~~~vL-v~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ 456 (472)
T 2fwr_A 379 SREEREEILEGFRT-GRFRAI-VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTG 456 (472)
T ss_dssp CSHHHHTHHHHHHH-SSCSBC-BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC
T ss_pred CHHHHHHHHHHHhC-CCCCEE-EEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCc
Confidence 99999999999995 566665 5779999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy15261 197 EEKIMNLQKFKLLTA 211 (292)
Q Consensus 197 Ee~i~~~~~~K~~~~ 211 (292)
|+++.++++.|...+
T Consensus 457 ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 457 EVNTARRRKNAAKGA 471 (472)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHhhccC
Confidence 999999988777654
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=1e-19 Score=151.40 Aligned_cols=123 Identities=21% Similarity=0.334 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHH
Q psy15261 42 KLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTA 121 (292)
Q Consensus 42 Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~ 121 (292)
|+.+|.+++... .+.|+||||++...++.+...|.. .++.+..+||++++.+
T Consensus 17 K~~~l~~ll~~~-------------------------~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 17 KYECLTDLYDSI-------------------------SVTQAVIFCNTRRKVEELTTKLRN---DKFTVSAIYSDLPQQE 68 (165)
T ss_dssp HHHHHHHHHHHT-------------------------TCSCEEEEESSHHHHHHHHHHHHH---TTCCEEEECTTSCHHH
T ss_pred HHHHHHHHHHhC-------------------------CCCCEEEEECCHHHHHHHHHHHHH---cCCCEEEEECCCCHHH
Confidence 999999999884 467999999999999999999944 5889999999999999
Q ss_pred HHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 122 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 122 R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
|..+++.|+. +.++||+ +|+++++|+|++.+++||++|+||++..+.||+||++|.|+...+ |.|+.....
T Consensus 69 r~~~~~~f~~-g~~~vlv-~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 69 RDTIMKEFRS-GSSRILI-STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp HHHHHHHHHT-TSCSEEE-EEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred HHHHHHHHHc-CCCEEEE-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 9999999994 5566655 779999999999999999999999999999999999999977654 556676654
No 13
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.81 E-value=3.5e-20 Score=180.05 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=90.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc---------CCCCce
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC---------EMPGVT 109 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~---------~~~~~~ 109 (292)
.++|+..|.++|.+... ...++|+||||++..+++.|...|... ...|..
T Consensus 370 ~~~K~~~L~~~l~~~~~---------------------~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~ 428 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYR---------------------YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 428 (556)
T ss_dssp CCHHHHHHHHHHHHHHH---------------------HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-----
T ss_pred CChHHHHHHHHHHHHhc---------------------CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccC
Confidence 48899999999976410 135789999999999999999999442 112556
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
+..+||++++.+|.+++++|+.++.++|| ++|+++++|+|++.+++||+||+||||..+.||+|| |+.+++.+|.
T Consensus 429 ~~~~~~~~~~~~R~~~~~~F~~~g~~~vL-vaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~ 503 (556)
T 4a2p_A 429 RRDQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCIL 503 (556)
T ss_dssp -------------------------CCEE-EEEC-----------CEEEEETCCSCHHHHHHC------------CCEEE
T ss_pred CcccccccCHHHHHHHHHHhcccCceEEE-EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEE
Confidence 66777889999999999999965777765 577999999999999999999999999999999888 5557889999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHH
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKIL 231 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~ 231 (292)
|++.++++++ +.....|..+...++.. +..|+.+++.
T Consensus 504 l~~~~~~~~~-~~~~~~k~~~~~~~i~~----i~~~~~~~~~ 540 (556)
T 4a2p_A 504 VTSKTEVVEN-EKCNRYKEEMMNKAVEK----IQKWDEETFA 540 (556)
T ss_dssp EESCHHHHHH-HHHHHHHHHHHHHHHHH----HHTSCHHHHH
T ss_pred EEeCcchHHH-HHhhHHHHHHHHHHHHH----hhcCChHHHH
Confidence 9999999999 66777787777776652 3444555543
No 14
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=157.23 Aligned_cols=125 Identities=23% Similarity=0.316 Sum_probs=104.8
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+..+.|+..|.++|... +.|+||||++...++.+...|.. .++.+..+||+
T Consensus 37 ~~~~~K~~~L~~~l~~~--------------------------~~~~lVF~~~~~~~~~l~~~L~~---~g~~~~~lhg~ 87 (191)
T 2p6n_A 37 VKEEAKMVYLLECLQKT--------------------------PPPVLIFAEKKADVDAIHEYLLL---KGVEAVAIHGG 87 (191)
T ss_dssp CCGGGHHHHHHHHHTTS--------------------------CSCEEEECSCHHHHHHHHHHHHH---HTCCEEEECTT
T ss_pred cChHHHHHHHHHHHHhC--------------------------CCCEEEEECCHHHHHHHHHHHHH---cCCcEEEEeCC
Confidence 44578999999988653 35899999999999999999944 48899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+++.+|..++++|+. +.++|| ++|+++++|+|++.+++||+||+||++..+.||+||++|.|++..+ +.|++..
T Consensus 88 ~~~~~R~~~l~~F~~-g~~~vL-vaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 88 KDQEERTKAIEAFRE-GKKDVL-VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp SCHHHHHHHHHHHHH-TSCSEE-EECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CCHHHHHHHHHHHhc-CCCEEE-EEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999995 456665 5779999999999999999999999999999999999999997654 4456554
No 15
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=146.88 Aligned_cols=123 Identities=24% Similarity=0.329 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
.|+.+|.+++... .+.|+||||++...++.+...| ...++.+..+||++++.
T Consensus 20 ~K~~~L~~ll~~~-------------------------~~~~~lVF~~~~~~~~~l~~~L---~~~~~~~~~~~g~~~~~ 71 (175)
T 2rb4_A 20 DKYQALCNIYGSI-------------------------TIGQAIIFCQTRRNAKWLTVEM---IQDGHQVSLLSGELTVE 71 (175)
T ss_dssp HHHHHHHHHHTTS-------------------------CCSEEEEECSCHHHHHHHHHHH---HTTTCCEEEECSSCCHH
T ss_pred hHHHHHHHHHHhC-------------------------CCCCEEEEECCHHHHHHHHHHH---HHcCCcEEEEeCCCCHH
Confidence 3899999988764 4679999999999999999999 44588999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCC------CChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 121 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD------WSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 121 ~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~------wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+|..+++.|++ +.++|| ++|+++++|+|++.+++||+||+| |++..+.||+||++|.|+. ..+|.|+..+
T Consensus 72 ~R~~~~~~f~~-g~~~vL-vaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~ 147 (175)
T 2rb4_A 72 QRASIIQRFRD-GKEKVL-ITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVD 147 (175)
T ss_dssp HHHHHHHHHHT-TSCSEE-EECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGG
T ss_pred HHHHHHHHHHc-CCCeEE-EEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccc
Confidence 99999999994 566665 477999999999999999999999 6678899999999999965 4556667665
Q ss_pred C
Q psy15261 195 T 195 (292)
Q Consensus 195 T 195 (292)
.
T Consensus 148 ~ 148 (175)
T 2rb4_A 148 E 148 (175)
T ss_dssp G
T ss_pred h
Confidence 4
No 16
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.78 E-value=2.3e-19 Score=173.85 Aligned_cols=151 Identities=18% Similarity=0.257 Sum_probs=101.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccC---------CCCce
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCE---------MPGVT 109 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~---------~~~~~ 109 (292)
.++|+..|.++|.+.. ....+.|+||||++..+++.|...|.... ..|..
T Consensus 369 ~~~k~~~l~~~l~~~~---------------------~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~ 427 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEY---------------------HLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRG 427 (555)
T ss_dssp CCHHHHHHHHHHHHHH---------------------HHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--
T ss_pred CCHHHHHHHHHHHHHh---------------------ccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecC
Confidence 4789999999998752 01256899999999999999999995431 22556
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
+..+||++++.+|.+++++|++++.++||| +|+++++|+|++.+++||+||+||||..+.||+|| |+.+.+.+|.
T Consensus 428 ~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~ 502 (555)
T 3tbk_A 428 RTNRATGMTLPAQKCVLEAFRASGDNNILI-ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFL 502 (555)
T ss_dssp ------------------------CCSEEE-ECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEE
T ss_pred CcccccccCHHHHHHHHHHHhcCCCeeEEE-EcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEE
Confidence 667778999999999999999657777755 78999999999999999999999999999998888 6668899999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhc
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVIN 216 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~ 216 (292)
|++.++.++. ..+...|..+.+..+.
T Consensus 503 l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 503 LTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp EESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 9999999888 4555556655555543
No 17
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.78 E-value=2.7e-19 Score=182.82 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=95.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc---------CCCCce
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC---------EMPGVT 109 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~---------~~~~~~ 109 (292)
.++|+..|.++|.+... ...++|+||||+++.+++.|...|... ...|..
T Consensus 611 ~~~K~~~L~~lL~~~~~---------------------~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~ 669 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYR---------------------YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 669 (797)
T ss_dssp CCHHHHHHHHHHHHHHH---------------------HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----
T ss_pred CChHHHHHHHHHHHHhc---------------------cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecC
Confidence 58899999999986310 135789999999999999999999542 113566
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
+..+||++++.+|.+++++|+.++.++|| ++|+++++|||++.|++||+||+||||..+.||+|| ||.+++.+|.
T Consensus 670 ~~~~hg~~~~~eR~~~l~~F~~~g~~~vL-VaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~ 744 (797)
T 4a2q_A 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCIL 744 (797)
T ss_dssp ------------------------CCSEE-EEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEE
T ss_pred CcccCCCCCHHHHHHHHHHhhccCCceEE-EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEE
Confidence 77788999999999999999975677765 578999999999999999999999999999999988 4557889999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHH
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKI 230 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el 230 (292)
|++.++++++ +.....|..+...++.. +..|+..++
T Consensus 745 l~~~~~~ee~-~~~~~~ke~~~~~~i~~----l~~~~~~~~ 780 (797)
T 4a2q_A 745 VTSKTEVVEN-EKCNRYKEEMMNKAVEK----IQKWDEETF 780 (797)
T ss_dssp EECCHHHHHH-HHHHHHHHHHHHHHHHH----HHTSCHHHH
T ss_pred EEeCCcHHHH-HHHHHHHHHHHHHHHHH----HhcCCHHHH
Confidence 9999999999 77777787777776643 344455444
No 18
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.78 E-value=1.1e-18 Score=151.31 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=107.4
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..+.|+.+|.+++... .+.++||||++...++.+...|.. .++.+..+||++
T Consensus 14 ~~~~k~~~l~~ll~~~-------------------------~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~lhg~~ 65 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-------------------------SPDRAMVFTRTKAETEEIAQGLLR---LGHPAQALHGDL 65 (212)
T ss_dssp CTTSHHHHHHHHHHHH-------------------------CCSCEEEECSSHHHHHHHHHHHHH---HTCCEEEECSSS
T ss_pred CHHHHHHHHHHHHHhC-------------------------CCCeEEEEeCCHHHHHHHHHHHHH---cCCCEEEEECCC
Confidence 3567999999999874 468999999999999999999944 488999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
++.+|..++++|+. +.++|| ++|+++++|+|++++++||++++||++..+.||+||++|.|+.. .+|.|++..
T Consensus 66 ~~~~r~~~~~~f~~-g~~~vl-vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 66 SQGERERVLGAFRQ-GEVRVL-VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp CHHHHHHHHHHHHS-SSCCEE-EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred CHHHHHHHHHHHHC-CCCeEE-EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 99999999999995 556664 57799999999999999999999999999999999999999775 445556554
No 19
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.64 E-value=1.7e-20 Score=156.91 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
+.|+..|.+++... .+.|+||||++...++.+...| ...++.+..+||++++
T Consensus 15 ~~k~~~l~~ll~~~-------------------------~~~~~iVF~~~~~~~~~l~~~L---~~~~~~~~~~~g~~~~ 66 (170)
T 2yjt_D 15 EHKTALLVHLLKQP-------------------------EATRSIVFVRKRERVHELANWL---REAGINNCYLEGEMVQ 66 (170)
Confidence 56888898888763 4689999999999999999999 5558899999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.+|..++++|+. +.++| |++|+++++|+|++.+++||++|+||++..+.|++||++|.|++..+.++
T Consensus 67 ~~r~~~~~~f~~-g~~~v-LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 67 GKRNEAIKRLTE-GRVNV-LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 999999999994 45555 55779999999999999999999999999999999999999987765443
No 20
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.77 E-value=5.1e-19 Score=183.70 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=90.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccC---------CCCce
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCE---------MPGVT 109 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~---------~~~~~ 109 (292)
.++|+..|.++|.+... ...++|+||||+++.+++.|...|.... ..|..
T Consensus 611 ~~~K~~~L~~lL~~~~~---------------------~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~ 669 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYR---------------------YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 669 (936)
T ss_dssp CCHHHHHHHHHHHHTTT---------------------SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----
T ss_pred CCHHHHHHHHHHHHHhc---------------------cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCC
Confidence 58899999999988520 1357999999999999999999995421 12556
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
+..+||++++.+|.+++++|+.++.++| |++|+++++|||++.+++||+||+||||..+.||+|| ||.+++.+|.
T Consensus 670 ~~~~hg~m~~~eR~~il~~Fr~~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~ 744 (936)
T 4a2w_A 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCIL 744 (936)
T ss_dssp ------------------------CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEE
T ss_pred CcccCCCCCHHHHHHHHHHhhccCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEE
Confidence 6677888999999999999996566776 4588999999999999999999999999999999888 5557888999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhc
Q psy15261 190 LITKNTLEEKIMNLQKFKLLTANTVIN 216 (292)
Q Consensus 190 lv~~~TvEe~i~~~~~~K~~~~~~vv~ 216 (292)
|++.+|++++.+ ....|..+...++.
T Consensus 745 Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 745 VTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp EESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999866 66666666666554
No 21
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=2.7e-17 Score=150.08 Aligned_cols=126 Identities=21% Similarity=0.281 Sum_probs=105.1
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..+.|+.+|.+++... .+.++||||+....++.+...| ...++.+..+||++
T Consensus 11 ~~~~K~~~L~~ll~~~-------------------------~~~~~LVF~~t~~~~~~l~~~L---~~~g~~~~~lhg~l 62 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA-------------------------SPDRAMVFTRTKAETEEIAQGL---LRLGHPAQALHGDM 62 (300)
T ss_dssp CSSSHHHHHHHHHHHH-------------------------CCSSEEEECSSHHHHHHHHHHH---HTTTCCEEEECSCC
T ss_pred CHHHHHHHHHHHHHhc-------------------------CCCCEEEEECCHHHHHHHHHHH---HhCCCCEEEEeCCC
Confidence 4567999999999875 4789999999999999999999 44589999999999
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
++.+|..+++.|+. +.++|+ ++|+++++|+|++++++||++++||++..+.|++||++|.|+.. .+|.|++...
T Consensus 63 ~~~~r~~~~~~f~~-g~~~vL-VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 63 SQGERERVMGAFRQ-GEVRVL-VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp CTHHHHHHHHHHHH-TSCCEE-EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred CHHHHHHHHHHhhc-CCceEE-EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 99999999999995 456665 57799999999999999999999999999999999999999774 4555565543
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.68 E-value=1.6e-16 Score=147.49 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=106.4
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
.....|...|.+++... .++|+||||++...++.+...|.. .++.+..+||+
T Consensus 232 ~~~~~~~~~l~~~l~~~-------------------------~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~ 283 (391)
T 1xti_A 232 LKDNEKNRKLFDLLDVL-------------------------EFNQVVIFVKSVQRCIALAQLLVE---QNFPAIAIHRG 283 (391)
T ss_dssp CCGGGHHHHHHHHHHHS-------------------------CCSEEEEECSCHHHHHHHHHHHHH---TTCCEEEECTT
T ss_pred cCchhHHHHHHHHHHhc-------------------------CCCcEEEEeCcHHHHHHHHHHHHh---CCCcEEEEeCC
Confidence 34567888899988774 568999999999999999999944 48899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++..+|..+++.|++ +.+.| |++|+++++|+|++++++||++++||++..+.||+||++|.|+...+.++
T Consensus 284 ~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 284 MPQEERLSRYQQFKD-FQRRI-LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp SCHHHHHHHHHHHHT-TCCSE-EEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred CCHHHHHHHHHHHhc-CCCcE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999994 45555 45779999999999999999999999999999999999999987665544
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.66 E-value=3.9e-16 Score=148.76 Aligned_cols=123 Identities=18% Similarity=0.300 Sum_probs=106.0
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|...|.++|.... .++||||+....++.+...|.. .++.+..+||+
T Consensus 283 ~~~~~k~~~l~~~l~~~~--------------------------~~~lVF~~t~~~a~~l~~~L~~---~~~~~~~lhg~ 333 (434)
T 2db3_A 283 VNKYAKRSKLIEILSEQA--------------------------DGTIVFVETKRGADFLASFLSE---KEFPTTSIHGD 333 (434)
T ss_dssp CCGGGHHHHHHHHHHHCC--------------------------TTEEEECSSHHHHHHHHHHHHH---TTCCEEEESTT
T ss_pred eCcHHHHHHHHHHHHhCC--------------------------CCEEEEEeCcHHHHHHHHHHHh---CCCCEEEEeCC
Confidence 345678899999998742 3499999999999999999944 58899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEe
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 192 (292)
+++.+|..++++|++ +.+.| |++|+++++|+|++++++||+||+||++..|.||+||++|.|++..+.+| +.
T Consensus 334 ~~~~~R~~~l~~F~~-g~~~v-LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~--~~ 405 (434)
T 2db3_A 334 RLQSQREQALRDFKN-GSMKV-LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF--FD 405 (434)
T ss_dssp SCHHHHHHHHHHHHT-SSCSE-EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE--EC
T ss_pred CCHHHHHHHHHHHHc-CCCcE-EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE--Ee
Confidence 999999999999995 55665 55889999999999999999999999999999999999999987655444 55
No 24
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.66 E-value=2.6e-16 Score=147.58 Aligned_cols=122 Identities=23% Similarity=0.356 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHH
Q psy15261 42 KLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTA 121 (292)
Q Consensus 42 Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~ 121 (292)
|+..|.+++... ...++||||+....++.+...|.. .++.+..+||+++..+
T Consensus 263 k~~~l~~~~~~~-------------------------~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~ 314 (410)
T 2j0s_A 263 KFDTLCDLYDTL-------------------------TITQAVIFCNTKRKVDWLTEKMRE---ANFTVSSMHGDMPQKE 314 (410)
T ss_dssp HHHHHHHHHHHH-------------------------TSSEEEEECSSHHHHHHHHHHHHH---TTCCCEEECTTSCHHH
T ss_pred HHHHHHHHHHhc-------------------------CCCcEEEEEcCHHHHHHHHHHHHh---CCCceEEeeCCCCHHH
Confidence 888899988875 356999999999999999999944 4788999999999999
Q ss_pred HHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 122 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 122 R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
|..++++|++ +.++| |++|+++++|+|++.+++||++++||++..+.||+||++|.|++..+ +.|+....
T Consensus 315 r~~~~~~f~~-g~~~v-lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~~ 384 (410)
T 2j0s_A 315 RESIMKEFRS-GASRV-LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA--INFVKNDD 384 (410)
T ss_dssp HHHHHHHHHH-TSSCE-EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE--EEEEEGGG
T ss_pred HHHHHHHHHC-CCCCE-EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEE--EEEecHHH
Confidence 9999999995 45555 45889999999999999999999999999999999999999987544 44555543
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.66 E-value=3.3e-16 Score=146.24 Aligned_cols=127 Identities=18% Similarity=0.335 Sum_probs=108.4
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|+..|..++... .+.++||||++...++.+...|.. .++.+..+||+
T Consensus 240 ~~~~~k~~~l~~~~~~~-------------------------~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~~~~~ 291 (400)
T 1s2m_A 240 VEERQKLHCLNTLFSKL-------------------------QINQAIIFCNSTNRVELLAKKITD---LGYSCYYSHAR 291 (400)
T ss_dssp CCGGGHHHHHHHHHHHS-------------------------CCSEEEEECSSHHHHHHHHHHHHH---HTCCEEEECTT
T ss_pred echhhHHHHHHHHHhhc-------------------------CCCcEEEEEecHHHHHHHHHHHHh---cCCCeEEecCC
Confidence 34567888999988774 467999999999999999999954 47889999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
++..+|..+++.|++ +.++|| ++|+++++|+|++.+++||++++||++..+.||+||++|.|+... +|.|+....
T Consensus 292 ~~~~~r~~~~~~f~~-g~~~vL-v~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~~ 366 (400)
T 1s2m_A 292 MKQQERNKVFHEFRQ-GKVRTL-VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWND 366 (400)
T ss_dssp SCHHHHHHHHHHHHT-TSSSEE-EESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGGG
T ss_pred CCHHHHHHHHHHHhc-CCCcEE-EEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccch
Confidence 999999999999984 455654 577999999999999999999999999999999999999997654 445566553
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.66 E-value=2e-16 Score=145.10 Aligned_cols=111 Identities=19% Similarity=0.331 Sum_probs=96.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||++...++.+.+.|.. .++.+..+||+++..+|..+++.|++ +.+.|++ +|+++++|+|++++++||
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv-~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRD---IGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRILI-ATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH---TTCCEEEECSSSCHHHHHHHHHHHHT-TSSSEEE-ECTTHHHHCCCSCCSEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh---cCCCeEEeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChhhcCCCcccCCEEE
Confidence 467999999999999999999944 48899999999999999999999994 4556655 779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
++++||++..+.||+||++|.|+...+.+ ++.....
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~ 347 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRREY 347 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTSH
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEE--EEcHHHH
Confidence 99999999999999999999998775544 4555433
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=147.39 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=106.3
Q ss_pred ccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC
Q psy15261 37 IRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116 (292)
Q Consensus 37 ~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~ 116 (292)
+....|...|.+++... ..+.++||||+....++.+...|.. .++.+..+||+
T Consensus 257 ~~~~~~~~~l~~~l~~~------------------------~~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~~h~~ 309 (417)
T 2i4i_A 257 VEESDKRSFLLDLLNAT------------------------GKDSLTLVFVETKKGADSLEDFLYH---EGYACTSIHGD 309 (417)
T ss_dssp CCGGGHHHHHHHHHHTC------------------------CTTCEEEEECSSHHHHHHHHHHHHH---TTCCEEEECTT
T ss_pred eccHhHHHHHHHHHHhc------------------------CCCCeEEEEECCHHHHHHHHHHHHH---CCCCeeEecCC
Confidence 34467888899988774 3678999999999999999999944 58899999999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 117 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 117 ~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
++..+|..++++|+. +.++| |++|+++++|+|++++++||++++||++..+.||+||++|.|+...+ |.|+...
T Consensus 310 ~~~~~r~~~~~~f~~-g~~~v-lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 383 (417)
T 2i4i_A 310 RSQRDREEALHQFRS-GKSPI-LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 383 (417)
T ss_dssp SCHHHHHHHHHHHHH-TSSCE-EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEE--EEEECGG
T ss_pred CCHHHHHHHHHHHHc-CCCCE-EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceE--EEEEccc
Confidence 999999999999985 45555 55789999999999999999999999999999999999999976544 4445543
No 28
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=160.16 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=108.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCC-CCeEEEEeccHHHHHHHHHHHhcc---CCCCceEEEEE
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILT-QHRALIFCQLRAMLDIVENDLFKC---EMPGVTYLRLD 114 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~KvlIFsq~~~~l~~l~~~L~~~---~~~~~~~~~i~ 114 (292)
.++|+..|.++|.+... ..+ +.++||||++..+++.|...|... ...|+.+..+|
T Consensus 379 ~~~k~~~L~~~L~~~~~---------------------~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lh 437 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYT---------------------RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLI 437 (699)
T ss_dssp ---CSSCSHHHHHHHHH---------------------HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECC
T ss_pred CCHHHHHHHHHHHHHHh---------------------cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEE
Confidence 56788888888876310 012 789999999999999999999432 11278999999
Q ss_pred CC--------CCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEE
Q psy15261 115 GS--------VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVN 186 (292)
Q Consensus 115 G~--------~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~ 186 (292)
|+ +++.+|.+++++|+. +.++| |++|.++++|||++.+++||+||+|||+..+.||+||++|.| ..
T Consensus 438 g~~~~~~~~~~~~~eR~~~~~~F~~-g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~ 511 (699)
T 4gl2_A 438 GAGHSSEFKPMTQNEQKEVISKFRT-GKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----ST 511 (699)
T ss_dssp CSCCCTTCCCCCHHHHHHHHHHHCC----CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CE
T ss_pred CCCCccCCCCCCHHHHHHHHHHHhc-CCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ce
Confidence 99 999999999999995 55665 558899999999999999999999999999999999976555 44
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q psy15261 187 VYRLITKNTLEEKIMNLQKFKLLTANTVIN 216 (292)
Q Consensus 187 Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~ 216 (292)
++.+...++.+.........+..+....+.
T Consensus 512 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 512 YVLVAHSGSGVIERETVNDFREKMMYKAIH 541 (699)
T ss_dssp EEEEEESSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHHHHHH
Confidence 444566666555544444445554444443
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.65 E-value=1.9e-16 Score=143.87 Aligned_cols=117 Identities=20% Similarity=0.336 Sum_probs=99.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||++...++.+...| . .+..+||+++..+|.+++++|++ +.++|| ++|+++++|+|++.+++||
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l---~----~~~~~~~~~~~~~r~~~~~~f~~-~~~~vl-v~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLF---D----NAIELRGDLPQSVRNRNIDAFRE-GEYDML-ITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTC---T----TEEEECTTSCHHHHHHHHHHHHT-TSCSEE-EECHHHHTTCCCCCBSEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHh---h----hhhhhcCCCCHHHHHHHHHHHHc-CCCcEE-EEcCccccCCCccCCCEEE
Confidence 5789999999999999999887 2 57889999999999999999995 556664 5789999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHH
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQK 205 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~ 205 (292)
++++||++..+.|++||++|.|+...+.+|.. .+..+.+.+.+...
T Consensus 290 ~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 290 NFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp ESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred EecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999988888876 55556666655443
No 30
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.62 E-value=1.3e-15 Score=141.08 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=93.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.+...|.. .++.+..+||+++..+|..++++|+. +.++| |++|+++++|+|++++++||
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKS---EGHEVSILHGDLQTQERDRLIDDFRE-GRSKV-LITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHH---TTCCCEEECTTSCHHHHHHHHHHHHT-TSCCE-EEECGGGSSSCCCTTEEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHHHHC-CCCCE-EEECChhhcCCCcccCCEEE
Confidence 568999999999999999999944 47889999999999999999999995 45565 55789999999999999999
Q ss_pred EeCCCC------ChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHDW------SPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~w------np~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++++|| ++..+.|++||++|.|+...+.++
T Consensus 317 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 317 NYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp ESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred EcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 999999 999999999999999987655443
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.62 E-value=4.9e-16 Score=155.69 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=81.3
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccC-CCCceEEEEE---
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCE-MPGVTYLRLD--- 114 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~-~~~~~~~~i~--- 114 (292)
.++|+..|.++|.+..- ..++.++||||++...++.|...|.... ..++.+..++
T Consensus 378 ~~~k~~~L~~ll~~~~~---------------------~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~ 436 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYH---------------------LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 436 (696)
T ss_dssp CCHHHHHHHHHHHHHHT---------------------TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----
T ss_pred CCHHHHHHHHHHHHHhc---------------------cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccC
Confidence 57899999999987520 1357899999999999999999995431 1227788885
Q ss_pred -----CCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEE
Q psy15261 115 -----GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYR 189 (292)
Q Consensus 115 -----G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~ 189 (292)
|++++.+|.+++++|+.++.++| |++|+++++|||++++++||+||+|||+..+.||+|| +|. +...+|.
T Consensus 437 ~~~~h~~~~~~eR~~v~~~F~~~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~ 511 (696)
T 2ykg_A 437 KTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFL 511 (696)
T ss_dssp ------------------------CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEE
T ss_pred CCccccCCCHHHHHHHHHHHHhcCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEE
Confidence 59999999999999996466666 5688999999999999999999999999999999999 775 5678899
Q ss_pred EEeCCCHHHH
Q psy15261 190 LITKNTLEEK 199 (292)
Q Consensus 190 lv~~~TvEe~ 199 (292)
|++.+++++.
T Consensus 512 l~~~~~~~~~ 521 (696)
T 2ykg_A 512 LTSNAGVIEK 521 (696)
T ss_dssp EESCHHHHHH
T ss_pred EecCCCHHHH
Confidence 9998887654
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=143.75 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHH
Q psy15261 41 AKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST 120 (292)
Q Consensus 41 ~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~ 120 (292)
.|+..|.+++... .+.++||||+....++.+.+.| ...++.+..+||+++..
T Consensus 266 ~~~~~l~~~~~~~-------------------------~~~~~lvf~~~~~~~~~l~~~l---~~~~~~~~~~h~~~~~~ 317 (414)
T 3eiq_A 266 WKLDTLCDLYETL-------------------------TITQAVIFINTRRKVDWLTEKM---HARDFTVSAMHGDMDQK 317 (414)
T ss_dssp THHHHHHHHHHSS-------------------------CCSSCEEECSCHHHHHHHHHHH---HTTTCCCEEC---CHHH
T ss_pred hHHHHHHHHHHhC-------------------------CCCcEEEEeCCHHHHHHHHHHH---HhcCCeEEEecCCCCHH
Confidence 4788888888764 4579999999999999999999 44588999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 121 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 121 ~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+|..+++.|++ +.++| |++|+++++|+|++++++||+++++|++..+.||+||++|.|+... +|.|+...
T Consensus 318 ~r~~~~~~f~~-g~~~v-lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 318 ERDVIMREFRS-GSSRV-LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp HHHHHHHHHSC-C---C-EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred HHHHHHHHHHc-CCCcE-EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 99999999985 44555 5688999999999999999999999999999999999999997754 44556655
No 33
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.60 E-value=1.8e-15 Score=146.40 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|...+.+++.... ...+.++|||+. ...++.|.+.|.. .+.++..+||+++.
T Consensus 330 ~~~~~~l~~~l~~~~----------------------~~~~~~~ivf~~-~~~~~~l~~~L~~---~~~~v~~~~g~~~~ 383 (510)
T 2oca_A 330 SKRNKWIAKLAIKLA----------------------QKDENAFVMFKH-VSHGKAIFDLIKN---EYDKVYYVSGEVDT 383 (510)
T ss_dssp HHHHHHHHHHHHHHH----------------------TTTCEEEEEESS-HHHHHHHHHHHHT---TCSSEEEESSSTTH
T ss_pred HHHHHHHHHHHHHHH----------------------hcCCCeEEEEec-HHHHHHHHHHHHH---cCCCeEEEECCCCH
Confidence 346666777777652 124677888888 7778889999943 35689999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCcc-eEEEEEEEeCCCHHH
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKK-VVNVYRLITKNTLEE 198 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy~lv~~~TvEe 198 (292)
.+|++++++|+ ++.++|||++..++++|+|++.+++||+++++|++..+.|++||++|.|+.+ .|.||.++...++.+
T Consensus 384 ~~r~~i~~~f~-~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~ 462 (510)
T 2oca_A 384 ETRNIMKTLAE-NGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKP 462 (510)
T ss_dssp HHHHHHHHHHH-HCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCC
T ss_pred HHHHHHHHHHh-CCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhh
Confidence 99999999999 4566777655599999999999999999999999999999999999999986 799999998766443
Q ss_pred H
Q psy15261 199 K 199 (292)
Q Consensus 199 ~ 199 (292)
+
T Consensus 463 ~ 463 (510)
T 2oca_A 463 K 463 (510)
T ss_dssp S
T ss_pred h
Confidence 3
No 34
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.60 E-value=6.1e-15 Score=137.62 Aligned_cols=118 Identities=26% Similarity=0.366 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS 119 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~ 119 (292)
..|+..|.+++... .+.++||||+....++.+...|.. .++.+..+||+++.
T Consensus 251 ~~~~~~l~~~~~~~-------------------------~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~ 302 (412)
T 3fht_A 251 DEKFQALCNLYGAI-------------------------TIAQAMIFCHTRKTASWLAAELSK---EGHQVALLSGEMMV 302 (412)
T ss_dssp HHHHHHHHHHHHHH-------------------------SSSEEEEECSSHHHHHHHHHHHHH---TTCCCEEECTTSCH
T ss_pred HHHHHHHHHHHhhc-------------------------CCCCEEEEeCCHHHHHHHHHHHHh---CCCeEEEecCCCCH
Confidence 45788888888775 467999999999999999999944 47889999999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCCh------hhHHHHhHhhhhcCCcceEEE
Q psy15261 120 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP------MKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 120 ~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp------~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
.+|..++++|++ +.++| |++|+++++|+|++++++||++++||++ ..+.||+||++|.|+...+.+
T Consensus 303 ~~r~~~~~~f~~-g~~~v-lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 374 (412)
T 3fht_A 303 EQRAAVIERFRE-GKEKV-LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 374 (412)
T ss_dssp HHHHHHHHHHHT-TSCSE-EEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred HHHHHHHHHHHC-CCCcE-EEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEE
Confidence 999999999994 55565 5578999999999999999999999876 689999999999997654433
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.56 E-value=1.9e-14 Score=140.48 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=94.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.+...|.. .++.+..+||+++..+|..+.+.|.. +.++|+ ++|.+.++|+|++++++||
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vl-VaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQS---KGISAAAYHAGLENNVRADVQEKFQR-DDLQIV-VATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH---TTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEE-EECTTSCTTTCCTTCCEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHH---CCCCEEEecCCCCHHHHHHHHHHHHc-CCCeEE-EEechhhCCCCccCccEEE
Confidence 578999999999999999999944 48899999999999999999999995 456665 4779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++++|+++..+.|++||++|.|+...+.++
T Consensus 310 ~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp ESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 999999999999999999999987665553
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=4e-14 Score=139.50 Aligned_cols=109 Identities=17% Similarity=0.291 Sum_probs=95.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.++||||.....++.+...|......++.+..+||.+++.+|..++++|.. +.+.| |++|+++++|+|++++++|
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~-g~~~v-LVaT~~~~~GiDip~v~~V 363 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 363 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-CCCeE-EEEcchhhcCCCcccCCEE
Confidence 357899999999999999999996543348899999999999999999999995 45555 5578999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
|++++|+++..+.|++||++|.|+...+.++
T Consensus 364 I~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 364 LQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 9999999999999999999999987655544
No 37
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.54 E-value=4.4e-14 Score=138.20 Aligned_cols=113 Identities=18% Similarity=0.298 Sum_probs=96.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.++||||+....++.+...|......++.+..+||++++.+|..+++.|.. +.+.| |++|+++++|+|++++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-CCCCE-EEEcchhhcCCCcccCCEE
Confidence 367899999999999999999996543348899999999999999999999995 45555 5578999999999999999
Q ss_pred EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
|++++|+++..+.|++||++|.|+...+.+ ++...
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~ 449 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD 449 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG
T ss_pred EEECCCCchhhhhhhcCccccCCCCceEEE--EEchh
Confidence 999999999999999999999997654444 45443
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.54 E-value=4.9e-16 Score=144.26 Aligned_cols=109 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||++...++.+...| ...++.+..+||+++..+|..+++.|++ +..+| |++|+++++|+|++.+++||
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L---~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKL---RNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHH---HHcCCeEEEeeCCCCHHHHHHHHHHHHC-CCCcE-EEECChhhcCCCcccCCEEE
Confidence 4679999999999999999999 5558899999999999999999999984 45555 55889999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
++++||++..+.|++||++|.|+...+.+ ++...
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ------------------------------------
T ss_pred EeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 99999999999999999999998765544 44444
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.52 E-value=3.7e-14 Score=140.49 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=94.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||.....++.+...|.. .|+.+..+||++++.+|..++++|.. +.++|| ++|.++++|+|++++++||
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~---~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~Vl-VAT~a~~~GID~p~V~~VI 340 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQN---LGIHAGAYHANLEPEDKTTVHRKWSA-NEIQVV-VATVAFGMGIDKPDVRFVI 340 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH---TTCCEEEECTTSCHHHHHHHHHHHHT-TSSSEE-EECTTSCTTCCCSCEEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHH---CCCCEEEecCCCCHHHHHHHHHHHHc-CCCeEE-EEechhhcCCCcccccEEE
Confidence 678999999999999999999944 58899999999999999999999995 556665 5779999999999999999
Q ss_pred EeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++++|+++..|.|++||++|.|+...+.++
T Consensus 341 ~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 341 HHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp ESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999999987665554
No 40
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.49 E-value=4.7e-14 Score=139.14 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=94.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccC-----CCCceEEEEECCCCHHHHHHHHHHhcCCC-CeeEEEecccccccccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCE-----MPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~-----~~~~~~~~i~G~~~~~~R~~~v~~F~~~~-~~~vlLlst~~~~~GlnL~ 152 (292)
.+.|+||||++...++.+...|.... ..+..+..++|.++ ++|++++++|++.. ...++|++++++++|+|++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 56899999999999999999995431 11223778999875 37999999999643 3677899999999999999
Q ss_pred CCCEEEEeCCCCChhhHHHHhHhhhhcCC---cceEEEEEEE
Q psy15261 153 GADTVIFVDHDWSPMKDLQAMDRAHRIGQ---KKVVNVYRLI 191 (292)
Q Consensus 153 ~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ---~~~V~Vy~lv 191 (292)
.+++||+++++|++..+.|++||++|.|+ +..+.||.++
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999999999999999999995 5678888776
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.48 E-value=2.7e-13 Score=127.55 Aligned_cols=117 Identities=18% Similarity=0.062 Sum_probs=99.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEE-EEECCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYL-RLDGSV 117 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~-~i~G~~ 117 (292)
...|...|.++|... +.++||||+....++.+...|.. .++.+. .+||.
T Consensus 237 ~~~~~~~l~~~l~~~--------------------------~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~- 286 (414)
T 3oiy_A 237 SSRSKEKLVELLEIF--------------------------RDGILIFAQTEEEGKELYEYLKR---FKFNVGETWSEF- 286 (414)
T ss_dssp SSCCHHHHHHHHHHH--------------------------CSSEEEEESSHHHHHHHHHHHHH---TTCCEEESSSCH-
T ss_pred ccCHHHHHHHHHHHc--------------------------CCCEEEEECCHHHHHHHHHHHHH---cCCceehhhcCc-
Confidence 346888888888774 37899999999999999999944 478887 88884
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEec---ccccccccCCCC-CCEEEEeCCC--CChhhHHHHhHhhhhcCCc--ceEEEEE
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG-ADTVIFVDHD--WSPMKDLQAMDRAHRIGQK--KVVNVYR 189 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLls---t~~~~~GlnL~~-a~~vI~~d~~--wnp~~~~Qa~gR~~RiGQ~--~~V~Vy~ 189 (292)
+|. +++|+ .+.++||+++ |+++++|+|+++ +++||+|++| +++..|.|++||++|.|+. +...++.
T Consensus 287 ---~r~--~~~f~-~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~ 360 (414)
T 3oiy_A 287 ---EKN--FEDFK-VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVI 360 (414)
T ss_dssp ---HHH--HHHHH-TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEE
T ss_pred ---chH--HHHHh-CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEE
Confidence 444 99999 4677888875 899999999999 9999999999 9999999999999999975 4566666
Q ss_pred EE
Q psy15261 190 LI 191 (292)
Q Consensus 190 lv 191 (292)
|+
T Consensus 361 ~~ 362 (414)
T 3oiy_A 361 FE 362 (414)
T ss_dssp EC
T ss_pred EE
Confidence 66
No 42
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.40 E-value=2.2e-14 Score=137.73 Aligned_cols=104 Identities=25% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.+...| ...++.+..+||++++.+|..+++.|+. +.++| |++|+++++|+|++++++||
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L---~~~~~~v~~lh~~~~~~~R~~~~~~f~~-g~~~i-Lv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAEL---SKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHH---HhCCccEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEEccccccCCccccCCEEE
Confidence 4578999999999999999999 4458899999999999999999999994 55555 55889999999999999999
Q ss_pred EeCCCCCh------hhHHHHhHhhhhcCCcceEEE
Q psy15261 159 FVDHDWSP------MKDLQAMDRAHRIGQKKVVNV 187 (292)
Q Consensus 159 ~~d~~wnp------~~~~Qa~gR~~RiGQ~~~V~V 187 (292)
+||+||++ ..+.||+||++|.|+...+.+
T Consensus 407 ~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp -----------------------------------
T ss_pred EecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 99999876 689999999999997655444
No 43
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.38 E-value=3.2e-12 Score=128.18 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=94.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.++||||.....++.|...|.. .|+.+..+||++++.+|..++++|.. +.+.|+ ++|+++++|+|++.+++|
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~---~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~VL-vaT~~l~~GlDip~v~lV 511 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVE---HGIRARYLHHELDAFKRQALIRDLRL-GHYDCL-VGINLLREGLDIPEVSLV 511 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHH---TTCCEEEECTTCCHHHHHHHHHHHHT-TSCSEE-EESCCCCTTCCCTTEEEE
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHh---cCCCceeecCCCCHHHHHHHHHHhhc-CCceEE-EccChhhcCccCCCCCEE
Confidence 4678999999999999999999944 47889999999999999999999984 566654 577999999999999999
Q ss_pred EEeCC-----CCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 158 IFVDH-----DWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 158 I~~d~-----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
|++|. |+++..+.|++||++|.|. -.++.++...+
T Consensus 512 I~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 512 AILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp EETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred EEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99998 8999999999999999863 23555666554
No 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.35 E-value=1.4e-13 Score=133.69 Aligned_cols=105 Identities=26% Similarity=0.387 Sum_probs=73.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.+...| ...++.+..+||+++..+|..++++|+. +.++| |++|+++++|+|++++++||
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L---~~~~~~v~~~hg~~~~~~R~~il~~f~~-g~~~V-LVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRM---TADGHTVACLTGNLEGAQRDAIMDSFRV-GTSKV-LVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHH---TTTTCCCCEEC-----CTTGGGTHHHHS-SSCCC-CEECC-----CCCTTCCEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHH---HhCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeE-EEeCChhhcCCCccCCCEEE
Confidence 4679999999999999999999 5568899999999999999999999984 45555 55789999999999999999
Q ss_pred EeCCC------CChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 159 FVDHD------WSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 159 ~~d~~------wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
++++| +++..+.|++||++|.|+...+.++
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 99999 7899999999999999977665554
No 45
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.32 E-value=9e-12 Score=130.11 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=97.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCC------------------------------------ceEEEEECCCCHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPG------------------------------------VTYLRLDGSVVSTAR 122 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~------------------------------------~~~~~i~G~~~~~~R 122 (292)
.+.++||||..+..++.+...|....... ..+..+||++++.+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 35689999999999999998884422111 127889999999999
Q ss_pred HHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE----eCC----CCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 123 HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VDH----DWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 123 ~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d~----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
..+.+.|.. +.++||+ +|.++++|+|++.++.||. ||. ||++..+.|++||++|.|+....++|.++..+
T Consensus 422 ~~ve~~F~~-G~ikVLV-AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 422 EVIEILFQE-GFLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHHHHHHHT-TCCSEEE-EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HHHHHHHhc-CCCcEEE-EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999999994 6677655 7799999999999999999 999 99999999999999999998888999888866
Q ss_pred C
Q psy15261 195 T 195 (292)
Q Consensus 195 T 195 (292)
.
T Consensus 500 ~ 500 (1010)
T 2xgj_A 500 M 500 (1010)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.32 E-value=6.7e-12 Score=125.77 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=94.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.++||||.....++.|...|.. .|+++..+||.+++.+|.+++++|.. +.+.| |++|++.++|++++.+++|
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~---~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~V-LVaT~~l~~GlDip~v~lV 517 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKE---IGIKVNYLHSEIKTLERIEIIRDLRL-GKYDV-LVGINLLREGLDIPEVSLV 517 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHH---TTCCEEEECTTCCHHHHHHHHHHHHH-TSCSE-EEESCCCSTTCCCTTEEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHh---cCCCeEEEeCCCCHHHHHHHHHHHhc-CCeEE-EEecchhhCCcccCCCCEE
Confidence 4678999999999999999999944 47889999999999999999999984 55665 5577999999999999999
Q ss_pred EEeCC-----CCChhhHHHHhHhhhhcCCcceEEEEEEEeCCC
Q psy15261 158 IFVDH-----DWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195 (292)
Q Consensus 158 I~~d~-----~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~T 195 (292)
|++|. |+++..+.|++||++|.+ .-.++.|+...+
T Consensus 518 i~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 518 AILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp EETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred EEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 99998 899999999999999972 334555666655
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.29 E-value=4e-12 Score=128.69 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=99.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..+|.+++.++. ..+.++||||.+....+.|...| ...|+++..+||...
T Consensus 414 ~~~K~~al~~~i~~~~-----------------------~~~~pvLVft~s~~~se~Ls~~L---~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRY-----------------------MTGQPVLVGTVAVETSELISKLL---KNKGIPHQVLNAKNH 467 (844)
T ss_dssp HHHHHHHHHHHHHHHH-----------------------HHTCCEEEEESCHHHHHHHHHHH---HTTTCCCEEECSSCH
T ss_pred HHHHHHHHHHHHHHHH-----------------------hcCCcEEEEECCHHHHHHHHHHH---HHCCCCEEEeeCCcc
Confidence 4568999999887752 35788999999999999999999 556899999999987
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC--------CCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------GADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~--------~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
..+|.-+...|+. + .| +++|+++|+|+|+. +..+||++|.|-++..|.|++||++|.|.......|
T Consensus 468 ~rEr~ii~~ag~~-g--~V-lIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 468 EREAQIIEEAGQK-G--AV-TIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp HHHHHHHTTTTST-T--CE-EEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHHHHHHHHcCCC-C--eE-EEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 7777645555543 2 34 66889999999998 788999999999999999999999999987654433
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.29 E-value=7.6e-12 Score=132.30 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=95.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.+++|||+....++.+...|.. ..+++.+..+||.++..+|++++++|. ++.++||+ +|.++++|+|++++++|
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~-~~p~~~v~~lhg~~~~~eR~~il~~F~-~g~~~VLV-aT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAE-LVPEARIAIGHGQMRERELERVMNDFH-HQRFNVLV-CTTIIETGIDIPTANTI 886 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHH-HCTTSCEEECCSSCCHHHHHHHHHHHH-TTSCCEEE-ESSTTGGGSCCTTEEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHH-hCCCCeEEEEeCCCCHHHHHHHHHHHH-cCCCcEEE-ECCcceeeecccCCcEE
Confidence 4678999999999999999999865 356889999999999999999999999 45667655 77899999999999999
Q ss_pred EEeCC-CCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 158 IFVDH-DWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 158 I~~d~-~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
|+++. +|++..+.|++||++|.|++.. +|.++...
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~--~~ll~~~~ 922 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAY--AWLLTPHP 922 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEE--EEEEECCG
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceE--EEEEECCc
Confidence 99988 5899999999999999996544 45555543
No 49
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.26 E-value=1.3e-11 Score=123.22 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=97.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..+|.+.+.++. ..+.++||||.+....+.|...| ...|+++..+||...
T Consensus 456 ~~eK~~al~~~I~~~~-----------------------~~gqpVLVFt~S~e~sE~Ls~~L---~~~Gi~~~vLhgkq~ 509 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRY-----------------------KKGQPVLVGTTSIEKSELLSSML---KKKGIPHQVLNAKYH 509 (822)
T ss_dssp HHHHHHHHHHHHHHHH-----------------------HHTCCEEEEESSHHHHHHHHHHH---HTTTCCCEEECSCHH
T ss_pred HHHHHHHHHHHHHHHh-----------------------hCCCCEEEEECCHHHHHHHHHHH---HHCCCCEEEeeCCch
Confidence 4469999999998762 35789999999999999999999 556899999999855
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCC--------CCCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------GADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~--------~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
..+|.-+...|.. + . ++++|+++|+|+|+. +..+||++++|-++..|.|++||++|.|.......|
T Consensus 510 ~rE~~ii~~ag~~-g--~-VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 510 EKEAEIVAKAGQK-G--M-VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp HHHHHHHHHHHST-T--C-EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred HHHHHHHHhCCCC-C--e-EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 4444444455553 2 3 466889999999997 677999999999999999999999999988665443
No 50
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.24 E-value=4e-11 Score=120.76 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=93.8
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCC---------------------------------CceEEEEECCCCHHHHHH
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMP---------------------------------GVTYLRLDGSVVSTARHA 124 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~---------------------------------~~~~~~i~G~~~~~~R~~ 124 (292)
..++++|||++....++.+...|...... ...+..+||+++..+|..
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 35689999999999999988888542111 124788999999999999
Q ss_pred HHHHhcCCCCeeEEEecccccccccCCCCCCEEEE----eC-------CCCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VD-------HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 125 ~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d-------~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
+.+.|.. +.++|+ ++|.++++|+|+++.++||. || .|+++..+.|++||++|.|+.+...+|.++..
T Consensus 330 v~~~f~~-g~~~vl-vaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 330 IEEGFRQ-RKIKVI-VATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHT-TCSCEE-EECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHc-CCCeEE-EEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 9999994 566665 57799999999999999998 88 78999999999999999999888899999877
Q ss_pred CC
Q psy15261 194 NT 195 (292)
Q Consensus 194 ~T 195 (292)
..
T Consensus 408 ~~ 409 (715)
T 2va8_A 408 KE 409 (715)
T ss_dssp GG
T ss_pred ch
Confidence 65
No 51
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2e-11 Score=128.63 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=95.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCC------------------------------------ceEEEEECCCCHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPG------------------------------------VTYLRLDGSVVSTAR 122 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~------------------------------------~~~~~i~G~~~~~~R 122 (292)
.+.++||||.....++.+...|....... ..+..+||++++.+|
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 46799999999999999998883311100 117889999999999
Q ss_pred HHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChh--------hHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 123 HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPM--------KDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 123 ~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~--------~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
..+...|.. +.++||+ +|.++++|+|++++++||.++.+|++. .|.|++||++|.|+....++|.++...
T Consensus 520 ~~v~~~F~~-G~ikVLV-AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 520 EVIEILFQE-GFLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHHHHH-TCCCEEE-EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHHHHHHhC-CCCeEEE-ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999994 5666655 779999999999999999888877665 499999999999998889999888877
Q ss_pred CHHHHH
Q psy15261 195 TLEEKI 200 (292)
Q Consensus 195 TvEe~i 200 (292)
..+..+
T Consensus 598 ~~~~~~ 603 (1108)
T 3l9o_A 598 MEPQVA 603 (1108)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 544433
No 52
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.20 E-value=5.6e-11 Score=119.94 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=99.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCC------------------------------CceEEEEECCCCHHHHHHHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMP------------------------------GVTYLRLDGSVVSTARHAIVTK 128 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~------------------------------~~~~~~i~G~~~~~~R~~~v~~ 128 (292)
.++++||||+.+..++.+...|...... ...+..+||++++.+|..+.+.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4689999999999988888877431000 1248889999999999999999
Q ss_pred hcCCCCeeEEEecccccccccCCCCCCEEEE----eC----CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHH
Q psy15261 129 FNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VD----HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199 (292)
Q Consensus 129 F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d----~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~ 199 (292)
|.. +.++|++ +|.+++.|+|+++.++||. || .|+++..+.|++||++|.|+.+...+|.++.....+..
T Consensus 316 f~~-g~~~vlv-aT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 392 (720)
T 2zj8_A 316 FRK-GIIKAVV-ATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV 392 (720)
T ss_dssp HHT-TSSCEEE-ECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHH
T ss_pred HHC-CCCeEEE-ECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHH
Confidence 994 5666655 7799999999999999998 77 58899999999999999999888999999988886543
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.19 E-value=3.5e-11 Score=121.75 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=101.1
Q ss_pred cccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 38 ~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
....|..+|.+++.++. ..+.+|||||.+....+.|...| ...|+++..+||..
T Consensus 422 ~~~~K~~al~~~i~~~~-----------------------~~gqpvLVft~sie~se~Ls~~L---~~~gi~~~vLnak~ 475 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERT-----------------------AKGQPVLVGTISIEKSELVSNEL---TKAGIKHNVLNAKF 475 (853)
T ss_dssp SHHHHHHHHHHHHHHHH-----------------------TTTCCEEEEESSHHHHHHHHHHH---HHTTCCCEECCTTC
T ss_pred CHHHHHHHHHHHHHHHh-----------------------cCCCCEEEEECcHHHHHHHHHHH---HHCCCCEEEecCCh
Confidence 34569999999998763 46789999999999999999999 44589999999998
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCC-------------------------------------CEEEEe
Q psy15261 118 VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA-------------------------------------DTVIFV 160 (292)
Q Consensus 118 ~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a-------------------------------------~~vI~~ 160 (292)
...+|.-+...|+.. . ++++|+.+|+|+|+... .|||.+
T Consensus 476 ~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~t 551 (853)
T 2fsf_A 476 HANEAAIVAQAGYPA---A-VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGT 551 (853)
T ss_dssp HHHHHHHHHTTTSTT---C-EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEES
T ss_pred hHHHHHHHHhcCCCC---e-EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEc
Confidence 777776667777742 3 56688999999999763 599999
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
|.|-++..|.|++||++|.|.......|
T Consensus 552 e~pes~riy~qr~GRTGRqGd~G~s~~f 579 (853)
T 2fsf_A 552 ERHESRRIDNQLRGRSGRQGDAGSSRFY 579 (853)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred cCCCCHHHHHhhccccccCCCCeeEEEE
Confidence 9999999999999999999987654444
No 54
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.18 E-value=3e-11 Score=121.58 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=97.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCC---------------------------CceEEEEECCCCHHHHHHHHHHhcC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMP---------------------------GVTYLRLDGSVVSTARHAIVTKFNS 131 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~---------------------------~~~~~~i~G~~~~~~R~~~v~~F~~ 131 (292)
.++++||||+....++.+...|...... +..+..+||++++.+|..+.+.|.+
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 5689999999999988888777431000 1246679999999999999999994
Q ss_pred CCCeeEEEecccccccccCCCCCCEEEE----eC---CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHH
Q psy15261 132 DPTIDVLLLTTQVGGLGLNLTGADTVIF----VD---HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198 (292)
Q Consensus 132 ~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d---~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe 198 (292)
+.++|+ ++|.+++.|+|+++.++||. || .|+++..+.|++||++|.|+.+...+|.++.....+.
T Consensus 321 -g~~~vl-vaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 321 -GNIKVV-VATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp -TSCCEE-EECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred -CCCeEE-EECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 566665 47799999999999999998 66 6889999999999999999988899999998877554
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.17 E-value=4.8e-11 Score=119.65 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=92.0
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
...+|||.....++.+...|.. .++.+..+||++++.+|..+.+.|+. ++.++| |++|+++++|+|+ .+++||+
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~---~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEI---RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIF 395 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHH---TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHh---cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEE
Confidence 4457889889999999999954 47899999999999999999999996 244555 5577999999999 9999999
Q ss_pred eCC--------------CCChhhHHHHhHhhhhcCCc-ceEEEEEEEeC
Q psy15261 160 VDH--------------DWSPMKDLQAMDRAHRIGQK-KVVNVYRLITK 193 (292)
Q Consensus 160 ~d~--------------~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv~~ 193 (292)
++. |+++..+.|++||++|.|+. ....||.+...
T Consensus 396 ~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 396 YSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp SCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999 88999999999999999987 45677776544
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.14 E-value=1.8e-10 Score=120.21 Aligned_cols=120 Identities=21% Similarity=0.178 Sum_probs=95.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCC------------------------------------CceEEEEECCCCHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMP------------------------------------GVTYLRLDGSVVSTAR 122 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~------------------------------------~~~~~~i~G~~~~~~R 122 (292)
...++||||..+..++.+...|...... ...+..+||++++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 4679999999999999999888432111 1147889999999999
Q ss_pred HHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC---------ChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 123 HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW---------SPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 123 ~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w---------np~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
..+.+.|.. +.++|| ++|.++++|+|+++ .+||+++.++ ++..|.|++||++|.|+.....+|.+...
T Consensus 415 ~~v~~~F~~-G~~kVL-vAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 415 ELIEILFSK-GFIKVL-FATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp HHHHHHHHT-TCCSEE-EECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred HHHHHHHHC-CCCcEE-EEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCC
Confidence 999999994 556665 47799999999999 7777766554 89999999999999999888888888865
Q ss_pred CCHHHHHH
Q psy15261 194 NTLEEKIM 201 (292)
Q Consensus 194 ~TvEe~i~ 201 (292)
+..+...+
T Consensus 492 ~~~~~~~~ 499 (997)
T 4a4z_A 492 SPLSIATF 499 (997)
T ss_dssp SCCCHHHH
T ss_pred CcchHHHH
Confidence 55444443
No 57
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.13 E-value=1.4e-10 Score=121.69 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec---ccccccccCCCCC-C
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTGA-D 155 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls---t~~~~~GlnL~~a-~ 155 (292)
+.++||||+....++.+...|.. . +.+..+||.+. .++++|. .+.++||+++ |+++++|||++++ +
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~---~-~~v~~lhg~~~-----~~l~~F~-~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKN---K-FRIGIVTATKK-----GDYEKFV-EGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTT---S-SCEEECTTSSS-----HHHHHHH-HTSCSEEEEECC------CCSCCTTTCC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhh---c-cCeeEEeccHH-----HHHHHHH-cCCCcEEEEecCCCCeeEeccccCCccc
Confidence 46899999999999999999933 3 88999999873 6889999 4667888875 8999999999996 9
Q ss_pred EEEEeCCC
Q psy15261 156 TVIFVDHD 163 (292)
Q Consensus 156 ~vI~~d~~ 163 (292)
+||+++.|
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99999999
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.11 E-value=1.2e-10 Score=118.24 Aligned_cols=120 Identities=16% Similarity=0.071 Sum_probs=98.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 39 HAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 39 ~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
...|..+|.+.+.++. ..+.++||||.+....+.|...| ...|+++..+||...
T Consensus 442 ~~~K~~al~~~i~~~~-----------------------~~gqpvLVft~Sie~sE~Ls~~L---~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERY-----------------------AKGQPVLIGTTSVERSEYLSRQF---TKRRIPHNVLNAKYH 495 (922)
T ss_dssp HHHHHHHHHHHHHHHH-----------------------HTTCCEEEEESCHHHHHHHHHHH---HHTTCCCEEECSSCH
T ss_pred HHHHHHHHHHHHHHHH-----------------------hcCCcEEEEECCHHHHHHHHHHH---HHCCCCEEEecCChh
Confidence 3459999999888762 46789999999999999999999 445899999999986
Q ss_pred HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCC--------------------------------------------
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA-------------------------------------------- 154 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a-------------------------------------------- 154 (292)
..+|.-+...|+. + .| +++|+.+|+|+|+...
T Consensus 496 ~rEa~iia~agr~-G--~V-tIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 496 EQEATIIAVAGRR-G--GV-TVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp HHHHHHHHTTTST-T--CE-EEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhcCCC-C--eE-EEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 6666556667763 2 34 6688999999999753
Q ss_pred --------CEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 155 --------DTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 155 --------~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
.|||.+|.|-++..|.|++||++|.|.......|
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ff 613 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFY 613 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEE
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEE
Confidence 4999999999999999999999999987654443
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.11 E-value=1.6e-10 Score=110.66 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=82.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
+.++||||+....++.+...| ...++.+..+||.+ ++++++.|.+ +.++|| ++|+++++|+|++. ++||+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L---~~~g~~~~~lh~~~----~~~~~~~f~~-g~~~vL-VaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCL---RKSGKRVIQLSRKT----FDTEYPKTKL-TDWDFV-VTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHH---HTTTCCEEEECTTT----HHHHGGGGGS-SCCSEE-EECGGGGSSCCCCC-SEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHH---HHcCCeEEECCHHH----HHHHHHhhcc-CCceEE-EECCHHHhCcCCCC-CEEEE
Confidence 568999999999999999999 44588999999975 3578999984 556664 57899999999999 99999
Q ss_pred eC--------------------CCCChhhHHHHhHhhhhcCC-cceEE
Q psy15261 160 VD--------------------HDWSPMKDLQAMDRAHRIGQ-KKVVN 186 (292)
Q Consensus 160 ~d--------------------~~wnp~~~~Qa~gR~~RiGQ-~~~V~ 186 (292)
++ .|.++..+.|++||++|.|. ...+.
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~ 305 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 305 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEE
Confidence 88 88999999999999999997 44443
No 60
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.11 E-value=4.8e-11 Score=113.96 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.+...|.. .++.+..+|| ++|.++++.|.+ +.++|| ++|++.++|+|++ +++||
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~---~~~~v~~lhg----~~R~~~~~~F~~-g~~~vL-VaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRK---AGKSVVVLNR----KTFEREYPTIKQ-KKPDFI-LATDIAEMGANLC-VERVL 245 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHH---TTCCEEECCS----SSCC---------CCCSEE-EESSSTTCCTTCC-CSEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHH---cCCCEEEecc----hhHHHHHhhhcC-CCceEE-EECChhheeeccC-ceEEE
Confidence 367999999999999999999954 4789999999 468889999994 566665 5779999999999 99998
Q ss_pred E-------------------eCCCCChhhHHHHhHhhhhcC-CcceEEE
Q psy15261 159 F-------------------VDHDWSPMKDLQAMDRAHRIG-QKKVVNV 187 (292)
Q Consensus 159 ~-------------------~d~~wnp~~~~Qa~gR~~RiG-Q~~~V~V 187 (292)
+ ++.|.++..+.|++||++|.| +...+.+
T Consensus 246 ~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~ 294 (440)
T 1yks_A 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 294 (440)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred eCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEE
Confidence 5 889999999999999999985 4444433
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.11 E-value=2.1e-11 Score=124.01 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=86.2
Q ss_pred CCCCeEEEEeccHH--------HHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccccc
Q psy15261 78 LTQHRALIFCQLRA--------MLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL 149 (292)
Q Consensus 78 ~~~~KvlIFsq~~~--------~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl 149 (292)
..+++++|||+... .+..+...|.....+++.+..+||++++.+|..++++|++ +.++| |++|.++++|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~-G~~~I-LVaT~vie~GI 653 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE-GRYDI-LVSTTVIEVGI 653 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT-TSSSB-CCCSSCCCSCS
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeE-EEECCCCCccc
Confidence 56889999998543 3566667774312367899999999999999999999994 55666 55889999999
Q ss_pred CCCCCCEEEEeCCCC-ChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 150 NLTGADTVIFVDHDW-SPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 150 nL~~a~~vI~~d~~w-np~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
|++++++||++++++ +...+.|++||++|.|+...|.++
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 999999999999994 788889999999999987655443
No 62
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.08 E-value=5.7e-11 Score=114.03 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=83.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
+.++||||+....++.+...|.. .++.+..+||. +|..+++.|.. +.++|| ++|+++++|+|+++ ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~---~g~~v~~lh~~----~R~~~~~~f~~-g~~~iL-VaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQR---AGKKVIQLNRK----SYDTEYPKCKN-GDWDFV-ITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH---TTCCEEEESTT----CCCCCGGGSSS-CCCSEE-EESSCC---CCCSC-SEEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHh---cCCcEEecCHH----HHHHHHhhccC-CCceEE-EECChHHhCeecCC-CEEEE
Confidence 57999999999999999999944 48899999995 67788999984 556664 57899999999998 99998
Q ss_pred --------------------eCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 160 --------------------VDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 160 --------------------~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
||.|.++..+.||+||++|.|.. +-.+|.|+...
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 78999999999999999999962 22334455554
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.07 E-value=2.3e-10 Score=120.52 Aligned_cols=89 Identities=18% Similarity=0.093 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEE-EEECCCC
Q psy15261 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYL-RLDGSVV 118 (292)
Q Consensus 40 S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~-~i~G~~~ 118 (292)
..|...|.++|... +.++||||+....++.+...|.. .++.+. .+||
T Consensus 295 ~~k~~~L~~ll~~~--------------------------~~~~LVF~~s~~~a~~l~~~L~~---~g~~~~~~lhg--- 342 (1104)
T 4ddu_A 295 SRSKEKLVELLEIF--------------------------RDGILIFAQTEEEGKELYEYLKR---FKFNVGETWSE--- 342 (1104)
T ss_dssp CCCHHHHHHHHHHH--------------------------CSSEEEEESSSHHHHHHHHHHHH---TTCCEEESSSS---
T ss_pred cCHHHHHHHHHHhc--------------------------CCCEEEEECcHHHHHHHHHHHHh---CCCCeeeEecC---
Confidence 36888898888874 37899999999999999999944 478887 8888
Q ss_pred HHHHHHHHHHhcCCCCeeEEEec---ccccccccCCCC-CCEEEEeCCCC
Q psy15261 119 STARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG-ADTVIFVDHDW 164 (292)
Q Consensus 119 ~~~R~~~v~~F~~~~~~~vlLls---t~~~~~GlnL~~-a~~vI~~d~~w 164 (292)
+|.+ +++|.+ +.++||+++ |+++++|+|+++ +++||+||+|-
T Consensus 343 --~rr~-l~~F~~-G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 343 --FEKN-FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp --HHHH-HHHHHH-TSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred --cHHH-HHHHHC-CCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 2555 999994 667887764 899999999999 99999999997
No 64
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.07 E-value=2.3e-10 Score=114.76 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 158 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI 158 (292)
.+.++||||+....++.+...|. ..++.+..+||. +|.++++.|.+ +.++|| ++|+++++|+|++ +++||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~---~~g~~v~~lHg~----eR~~v~~~F~~-g~~~VL-VaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQ---RAGKRVIQLNRK----SYDTEYPKCKN-GDWDFV-ITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHH---TTTCCEEEECSS----SHHHHGGGGGT-CCCSEE-EECGGGGTTCCCC-CSEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHH---hCCCeEEEeChH----HHHHHHHHHHC-CCceEE-EECchhhcceeeC-CcEEE
Confidence 47899999999999999999994 448899999994 78899999994 556665 4779999999999 99999
Q ss_pred E--------------------eCCCCChhhHHHHhHhhhhc-CCcceEEE
Q psy15261 159 F--------------------VDHDWSPMKDLQAMDRAHRI-GQKKVVNV 187 (292)
Q Consensus 159 ~--------------------~d~~wnp~~~~Qa~gR~~Ri-GQ~~~V~V 187 (292)
+ |+.|.++..+.|++||++|. |+...+.+
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~ 528 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYH 528 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEE
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEE
Confidence 7 56888899999999999999 55544433
No 65
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.04 E-value=2.1e-10 Score=116.81 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc--------cCCCCceEEEEECCCCHHHHHHHHHHhcC----CCCeeEEEecccccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK--------CEMPGVTYLRLDGSVVSTARHAIVTKFNS----DPTIDVLLLTTQVGG 146 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~--------~~~~~~~~~~i~G~~~~~~R~~~v~~F~~----~~~~~vlLlst~~~~ 146 (292)
.+.++|||++....++.+...|.. ....++.+..+||++++.+|.++++.|.. .+..+ +|++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHHH
Confidence 468999999999999999888842 12368899999999999999999999971 23444 466889999
Q ss_pred cccCCCCCCEEEEeCC------------------CCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 147 LGLNLTGADTVIFVDH------------------DWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 147 ~GlnL~~a~~vI~~d~------------------~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
+|+|+.+.++||.++. |.+...+.||+||++|. ++-.+|+|+++...
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999766 78999999999999998 45578888865444
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.99 E-value=5.4e-10 Score=106.38 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE---
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT--- 156 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~--- 156 (292)
+.+++|||+....++.+...|.. .++.+..+||. +|.+++++|.+ +.++|| ++|.+.++|+|++ ..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~---~~~~v~~lhg~----~r~~~~~~f~~-g~~~vL-VaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQK---AGKKVLYLNRK----TFESEYPKCKS-EKWDFV-ITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHH---TTCCEEEESTT----THHHHTTHHHH-SCCSEE-EECGGGGTSCCCC-CSEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH---cCCeEEEeCCc----cHHHHHHhhcC-CCCeEE-EECchHHcCcccC-CcEEEe
Confidence 56899999999999999999954 37899999997 57789999985 456665 5789999999998 555
Q ss_pred --------------EEEeCCCCChhhHHHHhHhhhhcCCcc-eEEEE
Q psy15261 157 --------------VIFVDHDWSPMKDLQAMDRAHRIGQKK-VVNVY 188 (292)
Q Consensus 157 --------------vI~~d~~wnp~~~~Qa~gR~~RiGQ~~-~V~Vy 188 (292)
||+++.|.++..+.|++||++|.|... .+.+|
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577889999999999999999999653 44444
No 67
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.96 E-value=5.9e-10 Score=110.83 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=84.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE-
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV- 157 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v- 157 (292)
.+.++||||+....++.+...|.. .++.+..+||. +|.+++++|.+ +.++| |++|+++++|+|+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~----~R~~~l~~F~~-g~~~V-LVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRK---SGKRVIQLSRK----TFDTEYPKTKL-TDWDF-VVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH---TTCCEEEECTT----THHHHTTHHHH-SCCSE-EEECGGGGTTCCCC-CSEEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHH---cCCcEEEEChH----HHHHHHHhhcC-CCcEE-EEECcHHHcCcccC-ceEEE
Confidence 357999999999999999999944 48899999984 68889999984 45566 55789999999996 8888
Q ss_pred -------------------EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEe
Q psy15261 158 -------------------IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192 (292)
Q Consensus 158 -------------------I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~ 192 (292)
|+++.|-++..+.||+||++|.|..+. .+|.|++
T Consensus 424 d~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 424 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred ECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 777778899999999999999986432 2455565
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.89 E-value=2e-09 Score=107.44 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
..+.++|||++.+..++.+.+.| ...++.+..+||++++.+ |... .. -+|++|+++++|||+. +++|
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L---~~~g~~v~~lHG~l~q~e-------r~~~-~~-~VLVATdVaerGIDId-V~~V 460 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKL---SGLGINAVAYYRGLDVSV-------IPTI-GD-VVVVATDALMTGYTGD-FDSV 460 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHH---HTTTCCEEEECTTSCGGG-------SCSS-SC-EEEEECTTHHHHCCCC-BSEE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHH---HhCCCcEEEecCCCCHHH-------HHhC-CC-cEEEECChHHccCCCC-CcEE
Confidence 35789999999999999999999 445899999999998754 4433 33 4566889999999986 9988
Q ss_pred E----------EeC-----------CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCH
Q psy15261 158 I----------FVD-----------HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196 (292)
Q Consensus 158 I----------~~d-----------~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~Tv 196 (292)
| +|| .|-++..+.||+||++| |.... |.|+.....
T Consensus 461 I~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~ 516 (666)
T 3o8b_A 461 IDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGER 516 (666)
T ss_dssp EECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCB
T ss_pred EecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchh
Confidence 8 566 77888999999999999 76543 778876543
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.27 E-value=1.1e-06 Score=96.23 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=84.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc----cCC------------------------------CCceEEEEECCCCHHHHHH
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK----CEM------------------------------PGVTYLRLDGSVVSTARHA 124 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~----~~~------------------------------~~~~~~~i~G~~~~~~R~~ 124 (292)
.++++||||..+.....+.+.|.. ... -...+...||++++.+|..
T Consensus 316 ~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~ 395 (1724)
T 4f92_B 316 GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTL 395 (1724)
T ss_dssp SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHH
Confidence 567899999987655544444421 000 0123677899999999999
Q ss_pred HHHHhcCCCCeeEEEecccccccccCCCCCCEEEE----eCCC------CChhhHHHHhHhhhhcCCcceEEEEEEEeCC
Q psy15261 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VDHD------WSPMKDLQAMDRAHRIGQKKVVNVYRLITKN 194 (292)
Q Consensus 125 ~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d~~------wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~ 194 (292)
+-+.|. .+.++||+ +|.+.+.|+||+..+.||. |++. .++..+.|++||+||.|....-.++.+...+
T Consensus 396 vE~~F~-~G~i~vlv-aTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~ 473 (1724)
T 4f92_B 396 VEDLFA-DKHIQVLV-STATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 473 (1724)
T ss_dssp HHHHHH-TTCCCEEE-ECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST
T ss_pred HHHHHH-CCCCeEEE-EcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecch
Confidence 999999 56777755 6789999999987776663 5543 4788999999999999987666666666655
Q ss_pred CH
Q psy15261 195 TL 196 (292)
Q Consensus 195 Tv 196 (292)
..
T Consensus 474 ~~ 475 (1724)
T 4f92_B 474 EL 475 (1724)
T ss_dssp TC
T ss_pred hH
Confidence 43
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.23 E-value=4.3e-06 Score=87.44 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=84.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccC---------CCCceE-EEEECC----------C----------CH---------
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCE---------MPGVTY-LRLDGS----------V----------VS--------- 119 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~---------~~~~~~-~~i~G~----------~----------~~--------- 119 (292)
.+.+++|||.....+..+...|.... ..++.+ +.++|. + ++
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 46799999999999998888885432 123444 455543 1 21
Q ss_pred --------------------HHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhc
Q psy15261 120 --------------------TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRI 179 (292)
Q Consensus 120 --------------------~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~Ri 179 (292)
..|..++++|.+ +.+++|+ .++...+|+|.+.+ +++++|.|.....+.||+||+.|.
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~-g~i~ILI-vvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN-QDIDLLI-VVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT-TSSSEEE-ESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHc-CCCeEEE-EcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 147889999994 5677766 56888999999999 788999999999999999999999
Q ss_pred CCc--ceEEEEEEEe
Q psy15261 180 GQK--KVVNVYRLIT 192 (292)
Q Consensus 180 GQ~--~~V~Vy~lv~ 192 (292)
+.. ....|+.|+.
T Consensus 693 ~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 693 YDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTCCSEEEEESSC
T ss_pred CCCCCCcEEEEEccc
Confidence 874 3466766663
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.22 E-value=2.1e-06 Score=94.07 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhcc----CC---------------------------CCceEEEEECCCCHHHHHHHH
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKC----EM---------------------------PGVTYLRLDGSVVSTARHAIV 126 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~----~~---------------------------~~~~~~~i~G~~~~~~R~~~v 126 (292)
..++++||||..+.....+...|... .. -...+...||++++.+|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 35789999999987766555443210 00 012477899999999999999
Q ss_pred HHhcCCCCeeEEEecccccccccCCCCCCEEEE----eCC------CCChhhHHHHhHhhhhcCCcceEEEEEEEeC
Q psy15261 127 TKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VDH------DWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193 (292)
Q Consensus 127 ~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~----~d~------~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~ 193 (292)
+.|.. +.++||+ +|.+.+.|+|++....||. ||. +.++..+.|++||++|.|....-.++.+...
T Consensus 1233 ~lF~~-G~i~VLv-aT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1233 QLFSS-GAIQVVV-ASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp HHHHH-TSBCEEE-EEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG
T ss_pred HHHHC-CCCeEEE-EChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc
Confidence 99994 6778766 6688899999987665552 222 4578899999999999998766666655544
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.0015 Score=63.47 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=48.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEe-cccccccccCCCC----
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL-TTQVGGLGLNLTG---- 153 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLl-st~~~~~GlnL~~---- 153 (292)
.+.++|||+.+...++.+...|. .++ +.++|.. ..|.+++++|..++ .|+++ .+....+|+|+.+
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~-----~~~-~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLS-----GIP-VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCT-----TSC-EEESTTT--CCHHHHHHHHHTSC--CEEEEEC---------------C
T ss_pred CCCCEEEEeCCHHHHHHHHHHhc-----cCc-eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCccc
Confidence 46789999999999999888772 233 3456654 46889999998633 34443 6799999999987
Q ss_pred CCEEEEeCCCCChh
Q psy15261 154 ADTVIFVDHDWSPM 167 (292)
Q Consensus 154 a~~vI~~d~~wnp~ 167 (292)
+..||++.+|+-+.
T Consensus 453 ~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 453 FESLVLAGLPYPNV 466 (540)
T ss_dssp EEEEEEESCCCCCT
T ss_pred ccEEEEECCCCCCC
Confidence 78899999997444
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.35 E-value=0.0063 Score=62.31 Aligned_cols=33 Identities=27% Similarity=0.168 Sum_probs=29.9
Q ss_pred EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEE
Q psy15261 156 TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188 (292)
Q Consensus 156 ~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy 188 (292)
|||--+.+-+...+.|.-||++|.|.......|
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 899999999999999999999999998776655
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.39 E-value=0.19 Score=49.56 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec-ccccccccCCCC--CCE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT-TQVGGLGLNLTG--ADT 156 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls-t~~~~~GlnL~~--a~~ 156 (292)
+..+|||..+-..++.+...|. .+... ..-+++..+|..++++|. + .-.||+.. .....+|+|+.+ +..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-----~~~~~-~~q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~ 519 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-----FEHMK-EYRGIDQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEM 519 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-----SCCEE-CCTTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-----hcchh-ccCCCChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEE
Confidence 4568888888888888877762 12222 333334567999999999 3 33455543 358899999965 789
Q ss_pred EEEeCCCCC
Q psy15261 157 VIFVDHDWS 165 (292)
Q Consensus 157 vI~~d~~wn 165 (292)
||+.-+|+-
T Consensus 520 viI~~lPfp 528 (620)
T 4a15_A 520 IILAGLPFP 528 (620)
T ss_dssp EEESSCCCC
T ss_pred EEEEcCCCC
Confidence 999988863
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=85.14 E-value=2.4 Score=42.95 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=61.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 157 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v 157 (292)
.+.+++|.+.....+.-..+.+.+. ...++++..++|+++..+|...+..... +.+.|++.+.......+.+.....|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhhhhhccCCceE
Confidence 5689999999877655444433221 3447899999999999999988888874 5578888887766666777777777
Q ss_pred EEeCCC
Q psy15261 158 IFVDHD 163 (292)
Q Consensus 158 I~~d~~ 163 (292)
|+=|-+
T Consensus 495 VIDEaH 500 (780)
T 1gm5_A 495 IIDEQH 500 (780)
T ss_dssp EEESCC
T ss_pred Eecccc
Confidence 765544
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=80.72 E-value=4.8 Score=36.57 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccc---ccCCCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGL---GLNLTGA 154 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~---GlnL~~a 154 (292)
..+.++||.++....+.-+.+.+......++.+..++|+.+..+|......+.. +.++|+++++..... -+++...
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH-TCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc-CCCCEEEECHHHHHHHHHHhccccc
Confidence 357899999999888777776664422268899999999999888888887774 336788888766421 1455667
Q ss_pred CEEEEeCC
Q psy15261 155 DTVIFVDH 162 (292)
Q Consensus 155 ~~vI~~d~ 162 (292)
+.||+=|-
T Consensus 141 ~~iViDEa 148 (414)
T 3oiy_A 141 DFVFVDDV 148 (414)
T ss_dssp SEEEESCH
T ss_pred cEEEEeCh
Confidence 77766444
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=78.05 E-value=12 Score=35.77 Aligned_cols=78 Identities=10% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECC-CCHHHHHHHHHHhcCCCCeeEEEec-ccccccccCCC---C
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS-VVSTARHAIVTKFNSDPTIDVLLLT-TQVGGLGLNLT---G 153 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~-~~~~~R~~~v~~F~~~~~~~vlLls-t~~~~~GlnL~---~ 153 (292)
.+..+|||..+-..++.+... .+.++. +.+. ++ +..+++.|...++ .||+.. .....+|+|++ +
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~------~~~~v~-~q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR------ISLPKY-VESEDSS---VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT------CCSSEE-ECCSSCC---HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTE
T ss_pred CCCCEEEEecCHHHHHHHHHh------cCCcEE-EcCCCCC---HHHHHHHHHhcCC-eEEEEEecceecccccccccCC
Confidence 355788888877777776652 244433 3443 33 4567888864443 455543 36889999999 3
Q ss_pred --CCEEEEeCCCCChh
Q psy15261 154 --ADTVIFVDHDWSPM 167 (292)
Q Consensus 154 --a~~vI~~d~~wnp~ 167 (292)
+..||+.-+|+-+.
T Consensus 461 ~~l~~viI~~lPfp~~ 476 (551)
T 3crv_A 461 SLISDVVIVGIPYPPP 476 (551)
T ss_dssp ESEEEEEEESCCCCCC
T ss_pred cceeEEEEEcCCCCCC
Confidence 78899998887433
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=75.17 E-value=7.4 Score=40.91 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=74.3
Q ss_pred ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEE
Q psy15261 35 SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114 (292)
Q Consensus 35 ~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~ 114 (292)
..-..|||-.+..-.+... ...+.++||.+..+..+.-+.+.+......++.+..++
T Consensus 99 ~ApTGSGKTl~~l~~il~~-----------------------~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~ 155 (1104)
T 4ddu_A 99 VAPTGVGKTTFGMMTALWL-----------------------ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY 155 (1104)
T ss_dssp CCSTTCCHHHHHHHHHHHH-----------------------HTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEEC
T ss_pred EeCCCCcHHHHHHHHHHHH-----------------------HhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4456788887655554443 13678999999999998888888855334678999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCeeEEEecccccccc---cCCCCCCEEEEeCC
Q psy15261 115 GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG---LNLTGADTVIFVDH 162 (292)
Q Consensus 115 G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~G---lnL~~a~~vI~~d~ 162 (292)
|+.+..+|......+.. +.++|+++++...-.- +++.....+|+=|-
T Consensus 156 Gg~~~~er~~~~~~l~~-g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 156 SSMKKEEKEKFEKSFEE-DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp TTCCTTHHHHHHHHHHT-SCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CCCCHHHHHHHHHHHhC-CCCCEEEECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 99998888888888874 4467888887654221 34566777776444
No 79
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=73.56 E-value=12 Score=28.24 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=43.3
Q ss_pred eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeE
Q psy15261 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV 137 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~v 137 (292)
-.+||+.-+..+..|.+.+ +..|++++.+......+.|.+.++.|.. .++.|
T Consensus 4 ifvvfssdpeilkeivrei---krqgvrvvllysdqdekrrrerleefek-qgvdv 55 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREI---KRQGVRVVLLYSDQDEKRRRERLEEFEK-QGVDV 55 (162)
T ss_dssp EEEEEESCHHHHHHHHHHH---HHTTCEEEEEECCSCHHHHHHHHHHHHT-TTCEE
T ss_pred EEEEecCCHHHHHHHHHHH---HhCCeEEEEEecCchHHHHHHHHHHHHH-cCCce
Confidence 4689999999888888877 6679999999999999999999999985 34444
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=71.63 E-value=18 Score=38.10 Aligned_cols=84 Identities=8% Similarity=0.070 Sum_probs=61.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhc-cCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCE
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFK-CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 156 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~-~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~ 156 (292)
..+.+++|.+.....+.-..+.+.+ ....++.+..++|..+..++...+.... .+.++|++++.......+.+.....
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~-~g~~dIvV~T~~ll~~~~~~~~l~l 728 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA-EGKIDILIGTHKLLQSDVKFKDLGL 728 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH-TTCCSEEEECTHHHHSCCCCSSEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEECHHHHhCCccccccce
Confidence 3577999999988766555544432 1334678899999999999888888887 4567888888777776777777666
Q ss_pred EEEeCC
Q psy15261 157 VIFVDH 162 (292)
Q Consensus 157 vI~~d~ 162 (292)
||+=+-
T Consensus 729 vIiDEa 734 (1151)
T 2eyq_A 729 LIVDEE 734 (1151)
T ss_dssp EEEESG
T ss_pred EEEech
Confidence 665443
No 81
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=67.59 E-value=15 Score=26.92 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=38.8
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..++|+||+. +-.......++|.. .++.|..++=...+..+..+..... ...+.++++.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~---~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~ifi~ 80 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKN---LNVPFEDVNILENEMLRQGLKEYSN-WPTFPQLYIG 80 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHH---TTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEEEET
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHH---cCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeEEEC
Confidence 5679999997 46778888888844 4677777765555566655554443 3445555554
No 82
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=65.35 E-value=16 Score=27.00 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..++|+||+. +-.......+.|.. .++.|..++=...+..|..+...-. ...+.++++.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~---~gi~y~~~di~~d~~~~~~l~~~~g-~~tvP~ifi~ 78 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHK---HNIQFSSFDIFSDEEVRQGLKAYSS-WPTYPQLYVS 78 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHH---TTCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHH---cCCCeEEEECcCCHHHHHHHHHHHC-CCCCCEEEEC
Confidence 5689999994 55667788888844 4777777776656666665544333 3445555554
No 83
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=63.33 E-value=49 Score=27.04 Aligned_cols=99 Identities=11% Similarity=-0.014 Sum_probs=61.6
Q ss_pred ccccccCCHHH-HHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccC--CCCceEE
Q psy15261 35 SDIRHAAKLPA-LKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCE--MPGVTYL 111 (292)
Q Consensus 35 ~~~~~S~Kl~~-L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~--~~~~~~~ 111 (292)
..-..|||-.+ +.-++..+.. ...+.++||.+.....+.-+.+.+.... .+++.+.
T Consensus 67 ~a~TGsGKT~~~~l~~l~~l~~---------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 67 QAKSGTGKTCVFSTIALDSLVL---------------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125 (230)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCT---------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred ECCCCCcHHHHHHHHHHHHHHh---------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEE
Confidence 44567889866 4555555420 1245799999999887776666664322 2478899
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCCCCEEEEe
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTGADTVIFV 160 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~a~~vI~~ 160 (292)
.++|+.+..++... +. ++.|+++++...- ..+++...+.+|+=
T Consensus 126 ~~~g~~~~~~~~~~---~~---~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 126 VFIGGTPLSQDKTR---LK---KCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp EECTTSCHHHHHHH---TT---SCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred EEeCCCCHHHHHHh---cc---CCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 99999887654433 22 4577887765432 23455556666553
No 84
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.85 E-value=17 Score=29.79 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=48.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTG 153 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~ 153 (292)
.+.++||.+.....+.-+.+.+......++.+..+.|+.+...+.. .+.. ++.|+++++.... ..+++..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK--GVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS--CCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC--CCCEEEECHHHHHHHHHcCCcCccc
Confidence 5788999999998887777777655556888999999876544322 2332 3567777764432 2455666
Q ss_pred CCEEEEeC
Q psy15261 154 ADTVIFVD 161 (292)
Q Consensus 154 a~~vI~~d 161 (292)
.+.+|+=|
T Consensus 168 ~~~lViDE 175 (228)
T 3iuy_A 168 ITYLVIDE 175 (228)
T ss_dssp CCEEEECC
T ss_pred ceEEEEEC
Confidence 77766643
No 85
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=60.20 E-value=20 Score=26.91 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=37.6
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCce---EEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVT---YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~---~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..++|+||+. +-.......+.|... ++. |..++=...+..|..+..... ...+.++++.
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~---gv~~~~~~~~dv~~~~~~~~~l~~~sg-~~tvP~vfI~ 81 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ---GVDPAKFAAYNVLEDPELREGIKEFSE-WPTIPQLYVN 81 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHH---TBCGGGEEEEECTTCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHc---CCCcceEEEEEecCCHHHHHHHHHHhC-CCCCCeEEEC
Confidence 4578999988 456677777777443 566 777776666666665555443 3445455544
No 86
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=58.83 E-value=33 Score=27.02 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHH
Q psy15261 42 KLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTA 121 (292)
Q Consensus 42 Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~ 121 (292)
++....+|+.+.. ..|.||+|+|.....++.|-+.|-......+-.-.+.|.-.
T Consensus 24 ~~~~aCrL~~ka~-----------------------~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~--- 77 (150)
T 3sxu_A 24 VEQLVCEIAAERW-----------------------RSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP--- 77 (150)
T ss_dssp HHHHHHHHHHHHH-----------------------HTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---
T ss_pred HHHHHHHHHHHHH-----------------------HcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---
Confidence 6677888888873 68999999999999999999999553333322222333321
Q ss_pred HHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeCCCC
Q psy15261 122 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 164 (292)
Q Consensus 122 R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d~~w 164 (292)
.....|+|...... .-..++.+|+++..+
T Consensus 78 ----------~~~~PV~L~~~~~~----~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 78 ----------RGGAPVEIAWPQKR----SSSRRDILISLRTSF 106 (150)
T ss_dssp ----------TTCCSEEEECTTSC----CCSCCSEEEECCSSC
T ss_pred ----------CCCCCEEEeCCCCC----CCCcCCEEEECCCCC
Confidence 12335666432211 123467888888876
No 87
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=58.55 E-value=25 Score=31.61 Aligned_cols=103 Identities=11% Similarity=0.066 Sum_probs=66.6
Q ss_pred CcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEE
Q psy15261 33 NLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYL 111 (292)
Q Consensus 33 ~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~ 111 (292)
.+..-..+||-.....++.... ...+.++||.+.....+.-..+.+.+. ..+...+.
T Consensus 27 ll~~~tG~GKT~~~~~~~~~~~----------------------~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 27 LIVLPTGLGKTLIAMMIAEYRL----------------------TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH----------------------HHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHH----------------------hcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheE
Confidence 3455567889877766665541 024679999999987776666555432 33555899
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccc-----ccCCCCCCEEEEeCCC
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGL-----GLNLTGADTVIFVDHD 163 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~-----GlnL~~a~~vI~~d~~ 163 (292)
.++|+....++..... ...|+++++..... .+.+...+.||+=|-+
T Consensus 85 ~~~g~~~~~~~~~~~~------~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWA------RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EECSCSCHHHHHHHHH------HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EeeCCcchhhhhhhcc------CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 9999998876654432 24577777665432 3456667777775444
No 88
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=57.94 E-value=40 Score=25.43 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=35.1
Q ss_pred CeEEEEecc------HHHHHHHHHHHhccCCCCc-eEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 81 HRALIFCQL------RAMLDIVENDLFKCEMPGV-TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 81 ~KvlIFsq~------~~~l~~l~~~L~~~~~~~~-~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
++|+||+-. ..+.....+.|.. .++ .|..++=...+.-|+.+.+.-+...-++|++-.-.+||
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~---~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRL---HGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHH---TTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHH---hCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECC
Confidence 689999642 3455566666633 245 36666666666666665554443333445553333443
No 89
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=57.35 E-value=43 Score=25.02 Aligned_cols=59 Identities=22% Similarity=0.203 Sum_probs=37.7
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhccCCCCce-EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecc
Q psy15261 80 QHRALIFCQ------LRAMLDIVENDLFKCEMPGVT-YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT 142 (292)
Q Consensus 80 ~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst 142 (292)
.++|+||+. +-.......+.|.. .+++ |..++=...+..|+.+..... ...+.++++..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~---~gv~~~~~vdV~~d~~~~~~l~~~tg-~~tvP~vfI~g 84 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRL---HGVRDYAAYNVLDDPELRQGIKDYSN-WPTIPQVYLNG 84 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHH---TTCCCCEEEESSSCHHHHHHHHHHHT-CCSSCEEEETT
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHH---cCCCCCEEEEcCCCHHHHHHHHHHhC-CCCcCeEEECC
Confidence 468999998 46678888888844 3664 666765556666665544433 34455555553
No 90
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=57.30 E-value=15 Score=28.12 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=34.1
Q ss_pred EEEEeccHHH-------HHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhc
Q psy15261 83 ALIFCQLRAM-------LDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN 130 (292)
Q Consensus 83 vlIFsq~~~~-------l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~ 130 (292)
|.||+....- ...+..+| ...|+.|..++=+..+..|.+++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL---~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFL---EANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHH---HHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHH---HHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 4566654332 36777888 446899999999999999999999983
No 91
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=56.15 E-value=66 Score=25.82 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccC--CCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc-----ccccCCC
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCE--MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNLT 152 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~--~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~-----~~GlnL~ 152 (292)
+.++||.+.....+.-+.+.+.+.. .+++.+..++|+.+...+...+.. ..+.|+++++... ...+++.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH----SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc----CCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 4589999999887766665553322 247889999999887655444432 2346777776543 2235566
Q ss_pred CCCEEEEeCCC
Q psy15261 153 GADTVIFVDHD 163 (292)
Q Consensus 153 ~a~~vI~~d~~ 163 (292)
..+.+|+=|.+
T Consensus 158 ~~~~lViDEah 168 (220)
T 1t6n_A 158 HIKHFILDECD 168 (220)
T ss_dssp TCCEEEEESHH
T ss_pred cCCEEEEcCHH
Confidence 67777764433
No 92
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=53.19 E-value=32 Score=35.82 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=65.8
Q ss_pred ccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc-CCCCc----e
Q psy15261 35 SDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC-EMPGV----T 109 (292)
Q Consensus 35 ~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~----~ 109 (292)
..-..|||-..+.-++..+. ..+.++||.++....+.-+.+.+... ...++ .
T Consensus 77 ~apTGSGKTl~~lp~l~~~~-----------------------~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~ 133 (1054)
T 1gku_B 77 TAPTGVGKTSFGLAMSLFLA-----------------------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENL 133 (1054)
T ss_dssp CCCBTSCSHHHHHHHHHHHH-----------------------TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGS
T ss_pred EcCCCCCHHHHHHHHHHHHh-----------------------hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccce
Confidence 44567899865555555541 35679999999988766555555321 23366 8
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccC-CCCCCEEEE
Q psy15261 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN-LTGADTVIF 159 (292)
Q Consensus 110 ~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~Gln-L~~a~~vI~ 159 (292)
+..++|+.+...+.+..+.+.. +.|+++++...-.-+. |...+.+|+
T Consensus 134 v~~~~Gg~~~~~~~~~~~~l~~---~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 134 IGYYHGRIPKREKENFMQNLRN---FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp EEECCSSCCSHHHHHHHHSGGG---CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred EEEEeCCCChhhHHHHHhhccC---CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 8999999998888777777774 6788887755443332 445555555
No 93
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=52.20 E-value=64 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=10.0
Q ss_pred CeEEEEeccHHHHHHHHHHH
Q psy15261 81 HRALIFCQLRAMLDIVENDL 100 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L 100 (292)
.++||.-........+...|
T Consensus 6 ~~ilivdd~~~~~~~l~~~L 25 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANIL 25 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHH
Confidence 34555555555555555554
No 94
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=49.17 E-value=36 Score=24.31 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 80 QHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 80 ~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..+++||+. +-.....+..+|... ++.|..++=...+..+..+...+. ...+.++++.
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~---~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~v~i~ 79 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNST---GVEYETFDILEDEEVRQGLKAYSN-WPTYPQLYVK 79 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHH---TCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHC---CCCeEEEECCCCHHHHHHHHHHHC-CCCCCeEEEC
Confidence 457999985 445677777777443 677777777666666766666665 3445555543
No 95
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=47.44 E-value=1.1e+02 Score=25.39 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=49.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc------ccccCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG------GLGLNL 151 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~------~~GlnL 151 (292)
.+.++||.+..+..+.-+.+.+... ...++.+..+.|+.+...+...+ . .++.|+++++... ..++++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A--KKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H--TCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c--CCCCEEEECHHHHHHHHHcCCCcCc
Confidence 3568999999988766555544221 22378889999998765443332 2 2457778775543 234567
Q ss_pred CCCCEEEEeCC
Q psy15261 152 TGADTVIFVDH 162 (292)
Q Consensus 152 ~~a~~vI~~d~ 162 (292)
...+.+|+=|-
T Consensus 185 ~~~~~lViDEa 195 (249)
T 3ber_A 185 RALKYLVMDEA 195 (249)
T ss_dssp TTCCEEEECSH
T ss_pred cccCEEEEcCh
Confidence 77777776443
No 96
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=47.04 E-value=19 Score=26.00 Aligned_cols=92 Identities=10% Similarity=0.000 Sum_probs=45.7
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC---CCCeeEEEecccccccccCC--CCCC
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS---DPTIDVLLLTTQVGGLGLNL--TGAD 155 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~---~~~~~vlLlst~~~~~GlnL--~~a~ 155 (292)
..+..+......+..+.. ..+..+.++-.++...-..+++..+. .+.+.+++++......-... .+++
T Consensus 28 ~~v~~~~~~~~a~~~l~~-------~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 28 FQADYVMSGTDALHAMST-------RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp EEEEEESSHHHHHHHHHH-------SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred CCEEEECCHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 456666555555544432 13456666665544333344444443 34566766664432211111 1233
Q ss_pred EEEEeCCCCChhhHHHHhHhhhhcCC
Q psy15261 156 TVIFVDHDWSPMKDLQAMDRAHRIGQ 181 (292)
Q Consensus 156 ~vI~~d~~wnp~~~~Qa~gR~~RiGQ 181 (292)
. ++.-|+++....+++.+.++-+.
T Consensus 101 ~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 101 F--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHC----
T ss_pred H--heeCCCCHHHHHHHHHHhhccCC
Confidence 3 45567788888888887776544
No 97
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=46.65 E-value=44 Score=24.09 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 79 TQHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 79 ~~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..++++||+. +-.....+..+|.. .++.|..++=...+..+..+..... ...+.++++.
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~---~~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~ifi~ 77 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNS---TGVEYETFDILEDEEVRQGLKTFSN-WPTYPQLYVR 77 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHH---TCSCEEEEESSSCHHHHHHHHHHHS-CCSSCEEECS
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHH---cCCCeEEEECCCCHHHHHHHHHHhC-CCCCCEEEEC
Confidence 3467999987 33356677777733 4788888888777766766665554 3445555543
No 98
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=46.41 E-value=50 Score=23.50 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=38.9
Q ss_pred CeEEEEeccHH-HHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEe
Q psy15261 81 HRALIFCQLRA-MLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140 (292)
Q Consensus 81 ~KvlIFsq~~~-~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLl 140 (292)
.+|.||+.... ......++| ...|++|..++=...+..|+.+.+.-+-...+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L---~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTAL---TANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHH---HHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHH---HhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 46889986543 477778888 4458899999988888877776665432334555554
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=46.28 E-value=97 Score=27.05 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=50.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc--CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC--EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNL 151 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~--~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL 151 (292)
.+.++||.+.....+.-+.+.+.+. ..+++.+..++|+.+.......+.. +...|+++++...- ..+++
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCPHIVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH----SCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCccc
Confidence 4568999999988777665555332 2247899999999887665544432 23467777655432 23455
Q ss_pred CCCCEEEEeC
Q psy15261 152 TGADTVIFVD 161 (292)
Q Consensus 152 ~~a~~vI~~d 161 (292)
...+.||+=|
T Consensus 151 ~~~~~vViDE 160 (391)
T 1xti_A 151 KHIKHFILDE 160 (391)
T ss_dssp TTCSEEEECS
T ss_pred cccCEEEEeC
Confidence 5666666543
No 100
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=45.59 E-value=73 Score=25.60 Aligned_cols=102 Identities=8% Similarity=-0.010 Sum_probs=57.3
Q ss_pred cccccccCCHHH-HHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEE
Q psy15261 34 LSDIRHAAKLPA-LKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYL 111 (292)
Q Consensus 34 ~~~~~~S~Kl~~-L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~ 111 (292)
+..-..|||-.+ +.-++..+.. ...+.++||.+.....+.-+.+.+... ...++.+.
T Consensus 56 v~~pTGsGKT~~~~~~~l~~l~~---------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 114 (224)
T 1qde_A 56 AQAQSGTGKTGTFSIAALQRIDT---------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 114 (224)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCT---------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred EECCCCCcHHHHHHHHHHHHHhc---------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEE
Confidence 345567889876 5666665420 124579999999988766665555331 33478888
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc-----ccccCCCCCCEEEEeCC
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNLTGADTVIFVDH 162 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~-----~~GlnL~~a~~vI~~d~ 162 (292)
.++|+.+..+.. ..+. .++|+++++... ...+++...+.+|+=|.
T Consensus 115 ~~~g~~~~~~~~---~~~~---~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 115 ACIGGTSFVEDA---EGLR---DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EECC-------------CT---TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEeCCcchHHHH---hcCC---CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 899987654332 2222 257788776542 22445666677666443
No 101
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=45.14 E-value=47 Score=25.46 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=39.4
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 80 QHRALIFCQ------LRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 80 ~~KvlIFsq------~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
..+|+||+. +......+.++| ...++.|..++=...+..|..+..... ...+.++++.
T Consensus 34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L---~~~gv~y~~vdI~~d~~~~~~L~~~~G-~~tvP~VfI~ 97 (135)
T 2wci_A 34 ENPILLYMKGSPKLPSCGFSAQAVQAL---AACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVD 97 (135)
T ss_dssp HCSEEEEESBCSSSBSSHHHHHHHHHH---HTTCSCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred cCCEEEEEEecCCCCCCccHHHHHHHH---HHcCCceEEEECCCCHHHHHHHHHHHC-CCCcCEEEEC
Confidence 357999987 556788888888 445788888877666666666665554 3455555544
No 102
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=44.00 E-value=14 Score=27.53 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=25.7
Q ss_pred CC-CeEEEEec-cHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 79 TQ-HRALIFCQ-LRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 79 ~~-~KvlIFsq-~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.+ ++++|||. .-.........|.. .|+.+..++|++.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~---~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSS---LGVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHH---TTCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHH---cCCceEEEeCcHH
Confidence 45 89999994 55555566666743 3667888999864
No 103
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.19 E-value=22 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=19.6
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEE
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYL 111 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~ 111 (292)
.+++|+.........+...|.. .|+.+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~---~g~~v~ 29 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA---AGFKVI 29 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH---TTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHh---CCcEEE
Confidence 4788888888888888888843 355544
No 104
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=42.75 E-value=38 Score=27.72 Aligned_cols=93 Identities=11% Similarity=0.180 Sum_probs=62.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 159 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~ 159 (292)
..|+++++.+..+.+.+++.... .+..+..+.|... +-....++. +.+++|++. .||.+--|...-.+-.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e---~~~~i~i~~~~l~--~~v~~a~~~--~~~~dVIIS---RGgta~~lr~~~~iPV 73 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALE---KNFIPITKTASLT--RASKIAFGL--QDEVDAIIS---RGATSDYIKKSVSIPS 73 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH---HTCEEEEEECCHH--HHHHHHHHH--TTTCSEEEE---EHHHHHHHHTTCSSCE
T ss_pred CCcEEEEEccHHHHHHHHHHHhh---hCCceEEEECCHH--HHHHHHHHh--cCCCeEEEE---CChHHHHHHHhCCCCE
Confidence 46899999999999988887743 2446667778763 333444555 356777772 3444433433223556
Q ss_pred eCCCCChhhHHHHhHhhhhcCCc
Q psy15261 160 VDHDWSPMKDLQAMDRAHRIGQK 182 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~RiGQ~ 182 (292)
++.+.+.....+++-++-+++.+
T Consensus 74 V~I~~s~~Dil~al~~a~~~~~k 96 (196)
T 2q5c_A 74 ISIKVTRFDTMRAVYNAKRFGNE 96 (196)
T ss_dssp EEECCCHHHHHHHHHHHGGGCSE
T ss_pred EEEcCCHhHHHHHHHHHHhhCCc
Confidence 67788899999999999988863
No 105
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=42.53 E-value=24 Score=25.61 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=29.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..+++++|||..-.........| ...|+.+..++|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L---~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFL---SQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHH---HTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHH---HHcCCCEEEEcCcH
Confidence 46789999998877777777788 44577888999985
No 106
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=41.30 E-value=1.2e+02 Score=26.34 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=61.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC--HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD 155 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~--~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~ 155 (292)
....++=++||+-.....+..++.. .--|+.++.--|... .-.=..+++.|.+|+.++++++-...++
T Consensus 149 ~~~G~va~vSqSG~l~~~~~~~~~~-~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~--------- 218 (297)
T 2yv2_A 149 FKEGGVAVVSRSGTLTYEISYMLTR-QGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGG--------- 218 (297)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHH-TTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSS---------
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHH-cCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC---------
Confidence 3456799999999988777777744 334777777777765 2345689999999999998886655443
Q ss_pred EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEE
Q psy15261 156 TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRL 190 (292)
Q Consensus 156 ~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~l 190 (292)
++..+.-+.-|. ...+|+|.+|..
T Consensus 219 ---------~~~~~~~~~~~~--~~~~KPVv~~k~ 242 (297)
T 2yv2_A 219 ---------DMEERAAEMIKK--GEFTKPVIAYIA 242 (297)
T ss_dssp ---------SHHHHHHHHHHT--TSCCSCEEEEES
T ss_pred ---------CHHHHHHHHHHh--ccCCCCEEEEEe
Confidence 444333333332 245688888753
No 107
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=41.22 E-value=99 Score=26.82 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC--HHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~--~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
....++=++||+-.....+..++.. .--|+..+.-.|... .-.=..+++.|..|+.++++++-...++
T Consensus 142 ~~~G~va~vsqSG~l~~~~~~~~~~-~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~ 211 (288)
T 1oi7_A 142 FKRGRVGIISRSGTLTYEAAAALSQ-AGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG 211 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHH-TTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSS
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 3456799999999988777777754 334777777777665 3355679999999999998886655443
No 108
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=40.25 E-value=27 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.+.++++|||..-.........| ...|+.+..++|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L---~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYL---EQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHH---HTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHH---HHCCCCEEEecccH
Confidence 46789999999877777777788 44577888899974
No 109
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=39.95 E-value=94 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=19.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK 102 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~ 102 (292)
+..++||..........+...|..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~ 29 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHK 29 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 456899999999999999999854
No 110
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=39.54 E-value=84 Score=29.26 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEe
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 160 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~ 160 (292)
.++=|+||+-.....+..++.. .--|+.++.-.|....-.=..+++.|..|+.++++++-.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~-~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~------------------ 210 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIK-EDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYI------------------ 210 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHH-TTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEE------------------
T ss_pred CCEEEEeCCHHHHHHHHHHHHh-cCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEE------------------
Confidence 6789999999988777777744 234677777777766555668999999999988877553
Q ss_pred CCCCChhhHHHHhHhhhhcCCcceEEEEEE
Q psy15261 161 DHDWSPMKDLQAMDRAHRIGQKKVVNVYRL 190 (292)
Q Consensus 161 d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~l 190 (292)
+.--|+..+..+..|+.| +|+|.+|..
T Consensus 211 E~i~~~~~f~~~a~~~~~---~KPVv~~k~ 237 (457)
T 2csu_A 211 EGVRNGKKFMEVAKRVTK---KKPIIALKA 237 (457)
T ss_dssp SCCSCHHHHHHHHHHHHH---HSCEEEEEC
T ss_pred ecCCCHHHHHHHHHHhcC---CCCEEEEEc
Confidence 332278888888888743 688888864
No 111
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=39.01 E-value=1.4e+02 Score=23.39 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=62.5
Q ss_pred cccccccCCHHH-HHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEE
Q psy15261 34 LSDIRHAAKLPA-LKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLR 112 (292)
Q Consensus 34 ~~~~~~S~Kl~~-L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~ 112 (292)
+..-..+||-.+ +.-++..+.-. .....+.++||.+.....+.-+.+.+... ...+.+..
T Consensus 43 i~~~TGsGKT~~~~~~~~~~l~~~------------------~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~~ 103 (207)
T 2gxq_A 43 GQARTGTGKTLAFALPIAERLAPS------------------QERGRKPRALVLTPTRELALQVASELTAV-APHLKVVA 103 (207)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCCC------------------CCTTCCCSEEEECSSHHHHHHHHHHHHHH-CTTSCEEE
T ss_pred EECCCCChHHHHHHHHHHHHHhhc------------------cccCCCCcEEEEECCHHHHHHHHHHHHHH-hhcceEEE
Confidence 345567899876 45555554200 00135678999999988877777766442 23477888
Q ss_pred EECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCCCCEEEEeCC
Q psy15261 113 LDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTGADTVIFVDH 162 (292)
Q Consensus 113 i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~a~~vI~~d~ 162 (292)
++|+.+.......+. . ++.|+++++...- ..+++...+.+|+=|.
T Consensus 104 ~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 104 VYGGTGYGKQKEALL---R--GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp ECSSSCSHHHHHHHH---H--CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred EECCCChHHHHHHhh---C--CCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 899877544433322 1 3567777764321 2345666777776443
No 112
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=38.59 E-value=39 Score=24.33 Aligned_cols=56 Identities=11% Similarity=0.224 Sum_probs=34.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCc--eEEEEECCCCHHHHHHHHHHhcC------CCCeeEEEecccc
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGV--TYLRLDGSVVSTARHAIVTKFNS------DPTIDVLLLTTQV 144 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~--~~~~i~G~~~~~~R~~~v~~F~~------~~~~~vlLlst~~ 144 (292)
+.++||..........+...|.. .++ .+..... .. ..+..... ...+.++|+....
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~---~~~~~~v~~~~~---~~---~a~~~l~~~~~~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALAN---STVPHEVVTVRD---GM---EAMAYLRQEGEYANASRPDLILLXLNL 65 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHT---CSSCCEEEEECS---HH---HHHHHHTTCGGGGSCCCCSEEEECSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh---cCCCceEEEECC---HH---HHHHHHHcccccccCCCCcEEEEecCC
Confidence 46899999999999999999943 455 3333222 22 33444442 1456778876554
No 113
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=38.55 E-value=83 Score=25.85 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=50.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~ 152 (292)
.+.++||.+.....+.-+.+.+... ...++.+..++|+.+.......+.. +++|+++++.... ..+++.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER-----GVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-----CCSEEEECHHHHHHHHHHTSCCCT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-----CCCEEEECHHHHHHHHHcCCCCcc
Confidence 4678999999887766555444221 2347889999999887665444432 3567787764432 234667
Q ss_pred CCCEEEEeCC
Q psy15261 153 GADTVIFVDH 162 (292)
Q Consensus 153 ~a~~vI~~d~ 162 (292)
....+|+=|.
T Consensus 176 ~~~~lViDEa 185 (242)
T 3fe2_A 176 RTTYLVLDEA 185 (242)
T ss_dssp TCCEEEETTH
T ss_pred cccEEEEeCH
Confidence 7777766443
No 114
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=38.26 E-value=1e+02 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=16.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHh
Q psy15261 80 QHRALIFCQLRAMLDIVENDLF 101 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~ 101 (292)
..++||.-........+...|.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~ 24 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVE 24 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT
T ss_pred cceEEEEeCCHHHHHHHHHHHH
Confidence 3578888888888888888773
No 115
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.93 E-value=46 Score=23.86 Aligned_cols=57 Identities=12% Similarity=0.012 Sum_probs=33.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccc
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV 144 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~ 144 (292)
..+.++||..........+...|.. .++.+.... +..+-...+.. ..+.++|+....
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~---~g~~v~~~~---~~~~a~~~l~~----~~~dlii~d~~l 60 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKR---DHWQVEIAH---NGFDAGIKLST----FEPAIMTLDLSM 60 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHH---TTCEEEEES---SHHHHHHHHHH----TCCSEEEEESCB
T ss_pred CCCccEEEEECCHHHHHHHHHHHHH---CCcEEEEeC---CHHHHHHHHHh----cCCCEEEEecCC
Confidence 3567999999999999999999943 466554332 22222223332 234677776554
No 116
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=37.68 E-value=1.2e+02 Score=26.23 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=61.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC--HHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD 155 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~--~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~ 155 (292)
....++=+++|+-.+...+..++.. .--|+.++.-.|... .-.-..+++.|..|+.++++++-...++
T Consensus 142 ~~~G~i~~vsqSG~l~~~~~~~~~~-~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~--------- 211 (288)
T 2nu8_A 142 HKPGKVGIVSRSGTLTYEAVKQTTD-YGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG--------- 211 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHH-TTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSS---------
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHh-cCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC---------
Confidence 3456788999998887777777644 335777777677654 2345678999999999998887655544
Q ss_pred EEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEE
Q psy15261 156 TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRL 190 (292)
Q Consensus 156 ~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~l 190 (292)
++..+..+.-+. ..+|+|.+|..
T Consensus 212 ---------~~~~~~~~~~~~---~~~KPVv~~k~ 234 (288)
T 2nu8_A 212 ---------SAEEEAAAYIKE---HVTKPVVGYIA 234 (288)
T ss_dssp ---------SHHHHHHHHHHH---HCCSCEEEEEE
T ss_pred ---------CHHHHHHHHHHh---cCCCCEEEEEe
Confidence 454444433333 34688888864
No 117
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=35.97 E-value=1.1e+02 Score=24.77 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=46.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc------cccCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG------LGLNL 151 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~------~GlnL 151 (292)
.+.++||.+.....+.-+.+.+... ...++.+..++|+.+....... +. ++.|+++++...- ..+++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~~iiv~Tp~~l~~~l~~~~~~~~ 169 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---IN---NINILVCTPGRLLQHMDETVSFHA 169 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---HT---TCSEEEECHHHHHHHHHHCSSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---CC---CCCEEEECHHHHHHHHHhcCCccc
Confidence 5678999999988776666555332 2346788889998765433222 22 4578887765432 13455
Q ss_pred CCCCEEEEeC
Q psy15261 152 TGADTVIFVD 161 (292)
Q Consensus 152 ~~a~~vI~~d 161 (292)
...+.+|+=|
T Consensus 170 ~~~~~lViDE 179 (236)
T 2pl3_A 170 TDLQMLVLDE 179 (236)
T ss_dssp TTCCEEEETT
T ss_pred ccccEEEEeC
Confidence 6666666533
No 118
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=35.90 E-value=29 Score=24.73 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.+.++++|||..-.........| ...|+.+..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L---~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYL---EANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHH---HTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHH---HHCCCCeEEeCCCH
Confidence 46789999999876677777777 44577888899874
No 119
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=35.60 E-value=24 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.+.++++|||..-.........| ...|+..+.+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L---~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYL---EANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHH---HTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHH---HHcCCCEEEecChH
Confidence 46789999998776666677778 44588888888874
No 120
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=35.45 E-value=1.2e+02 Score=26.25 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=49.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC--HHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~--~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
....++=++||+-.....+..++.. .--|+.++.--|... .-.=..+++.|..|+.++++++-...++
T Consensus 148 ~~~G~va~vSqSG~l~~~~~~~~~~-~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g 217 (294)
T 2yv1_A 148 LKEGSVGMVSRSGTLTYEIAHQIKK-AGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGG 217 (294)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHH-TTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSS
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHh-CCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 3456799999999887777777644 334777777777655 3345679999999999998887655544
No 121
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=34.66 E-value=1.2e+02 Score=21.46 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=42.0
Q ss_pred CeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC---CCCeeEEEecccccccccCC--CCCC
Q psy15261 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS---DPTIDVLLLTTQVGGLGLNL--TGAD 155 (292)
Q Consensus 81 ~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~---~~~~~vlLlst~~~~~GlnL--~~a~ 155 (292)
..+..+......+..+.. ..+.++.++-.++...-..+++..+. .+.+.+++++......-... .+++
T Consensus 28 ~~v~~~~~~~~a~~~l~~-------~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 28 FDCTTAADGASGLQQALA-------HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp SEEEEESSHHHHHHHHHH-------SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred cEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 445555554444444332 13456666655543333344444432 23556666664332111111 1233
Q ss_pred EEEEeCCCCChhhHHHHhHhhhhc
Q psy15261 156 TVIFVDHDWSPMKDLQAMDRAHRI 179 (292)
Q Consensus 156 ~vI~~d~~wnp~~~~Qa~gR~~Ri 179 (292)
. ++.-|+++....+++.++-+.
T Consensus 101 ~--~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 101 A--YLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp E--EEESSCCHHHHHHHHHHHHHH
T ss_pred e--EEeccCCHHHHHHHHHHHHhh
Confidence 2 344577777777777666543
No 122
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=34.61 E-value=1.3e+02 Score=21.81 Aligned_cols=24 Identities=8% Similarity=-0.119 Sum_probs=14.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHh
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLF 101 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~ 101 (292)
..+.++||..........+...|.
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~ 41 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVG 41 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHh
Confidence 345566666666666666666663
No 123
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=34.59 E-value=65 Score=22.34 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=36.2
Q ss_pred eEEEEeccHH-HH------HHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcC-CCCeeEEEec
Q psy15261 82 RALIFCQLRA-ML------DIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLT 141 (292)
Q Consensus 82 KvlIFsq~~~-~l------~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~-~~~~~vlLls 141 (292)
+++||+.... .. ....+.|. ..++.|..++=...+..|+.+...... ...+.++++.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~---~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILD---GKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHH---HTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHH---HCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 6788875432 34 56667773 347888888888777778777776642 1244455544
No 124
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.56 E-value=84 Score=22.77 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=34.1
Q ss_pred CCCeEEEEeccHH-HHH------HHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHh
Q psy15261 79 TQHRALIFCQLRA-MLD------IVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKF 129 (292)
Q Consensus 79 ~~~KvlIFsq~~~-~l~------~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F 129 (292)
...+|+||+.... ... .+.++|. ..++.|..++=...+..|+.+...+
T Consensus 6 ~~m~V~vy~~~~C~~C~~~~~~~~ak~~L~---~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 6 SGMVIRVFIASSSGFVAIKKKQQDVVRFLE---ANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCCCEEEEECSSCSCHHHHHHHHHHHHHHH---HTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred CccEEEEEEcCCCCCcccchhHHHHHHHHH---HcCCCEEEEECCCCHHHHHHHHHHh
Confidence 4568999985432 344 5777773 3478898898888888888777776
No 125
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.19 E-value=91 Score=22.40 Aligned_cols=30 Identities=13% Similarity=0.033 Sum_probs=21.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT 109 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~ 109 (292)
....++||..........+...|... .++.
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~--~~~~ 35 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENL--FPYA 35 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHH--CTTC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhc--cCcc
Confidence 35678999999999999999998431 4666
No 126
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=34.03 E-value=1e+02 Score=21.40 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=9.1
Q ss_pred eEEEEeccHHHHHHHHHHH
Q psy15261 82 RALIFCQLRAMLDIVENDL 100 (292)
Q Consensus 82 KvlIFsq~~~~l~~l~~~L 100 (292)
+++|..........+...|
T Consensus 7 ~ilivdd~~~~~~~l~~~L 25 (127)
T 2gkg_A 7 KILIVESDTALSATLRSAL 25 (127)
T ss_dssp EEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHH
Confidence 4444444444444444444
No 127
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.63 E-value=1.2e+02 Score=20.93 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=10.7
Q ss_pred eCCCCChhhHHHHhHhhh
Q psy15261 160 VDHDWSPMKDLQAMDRAH 177 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~ 177 (292)
+.-|+++....+++.++.
T Consensus 98 l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 98 VVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EECCSSTHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHh
Confidence 345666766666665543
No 128
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=33.22 E-value=1.7e+02 Score=22.80 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc--CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC--EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNL 151 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~--~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL 151 (292)
.+.++||.+.....+.-+.+.+... ..+++.+..++|+.+..+.. ..+. ..+.|+++++...- ..+++
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--~~~~i~v~T~~~l~~~~~~~~~~~ 144 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD--DTVHVVIATPGRILDLIKKGVAKV 144 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT--SCCSEEEECHHHHHHHHHTTCSCC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC--CCCCEEEeCHHHHHHHHHcCCcCc
Confidence 4568999999988766665555332 22378889999998765432 2233 35678887765431 12356
Q ss_pred CCCCEEEEeCC
Q psy15261 152 TGADTVIFVDH 162 (292)
Q Consensus 152 ~~a~~vI~~d~ 162 (292)
...+.+|+=|.
T Consensus 145 ~~~~~lViDEa 155 (206)
T 1vec_A 145 DHVQMIVLDEA 155 (206)
T ss_dssp TTCCEEEEETH
T ss_pred ccCCEEEEECh
Confidence 66777776443
No 129
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=32.92 E-value=64 Score=23.47 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFK 102 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~ 102 (292)
.+.++||..........+...|..
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~ 28 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQR 28 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH
Confidence 567899999999999999999954
No 130
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=32.16 E-value=2.2e+02 Score=25.42 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=49.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC--CHHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV--VSTARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~--~~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
....++=++||+-.+...+..++... --|+..+.--|.. ..-.=..+++.|..|+.++++++-...+|
T Consensus 166 ~~~G~vgivSqSG~l~~~i~~~~~~~-g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g 235 (334)
T 3mwd_B 166 YRPGSVAYVSRSGGMSNELNNIISRT-TDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGG 235 (334)
T ss_dssp TSCCSEEEEESCHHHHHHHHHHHHHH-SSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSS
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHhc-CCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCC
Confidence 44568999999999877777766543 3477777777775 44455679999999999998887655544
No 131
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.89 E-value=1.4e+02 Score=21.37 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=10.1
Q ss_pred eCCCCChhhHHHHhHhhhh
Q psy15261 160 VDHDWSPMKDLQAMDRAHR 178 (292)
Q Consensus 160 ~d~~wnp~~~~Qa~gR~~R 178 (292)
+.-|.++....+++.++.+
T Consensus 108 l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 108 LEKPIDENLLILSLHRAID 126 (140)
T ss_dssp ECSSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 3445566655555555543
No 132
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=30.96 E-value=1.5e+02 Score=25.87 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=48.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC--HHHHHHHHHHhcCCCCeeEEEecccccc
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGG 146 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~--~~~R~~~v~~F~~~~~~~vlLlst~~~~ 146 (292)
....++=|+||+-.....+..++.. .--|+..+.-.|... .-.=..+++.|..|+.++++++-...+|
T Consensus 150 ~~~G~va~vSqSG~l~~~~~~~~~~-~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g 219 (305)
T 2fp4_A 150 HKKGRIGIVSRSGTLTYEAVHQTTQ-VGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGG 219 (305)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHH-TTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSS
T ss_pred CCCCCEEEEecchHHHHHHHHHHHh-cCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCC
Confidence 3456799999999887777777744 334677777777654 2344578999999999998887655544
No 133
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=29.88 E-value=1.9e+02 Score=23.61 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=49.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~ 152 (292)
.+.++||.+..+..+.-+.+.+... ...++.+..+.|+.+...... ... .++.|+++++...- ..+++.
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQ--MGCHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHS--SCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhC--CCCCEEEECHHHHHHHHHcCCCChh
Confidence 4569999999988766555554332 334678888898876544322 222 34678887765532 234666
Q ss_pred CCCEEEEeCC
Q psy15261 153 GADTVIFVDH 162 (292)
Q Consensus 153 ~a~~vI~~d~ 162 (292)
..+.+|+=|.
T Consensus 174 ~~~~lViDEa 183 (253)
T 1wrb_A 174 FCKYIVLDEA 183 (253)
T ss_dssp TCCEEEEETH
T ss_pred hCCEEEEeCH
Confidence 6777776443
No 134
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=29.86 E-value=79 Score=29.82 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=46.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
+.++||.+.....+.-..+.|.. .++.+..++|..+..++......... +.+.++++++...
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~---~gi~~~~l~~~~~~~~~~~~~~~~~~-~~~~ilv~Tpe~l 126 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQA---NGVAAACLNSTQTREQQLEVMTGCRT-GQIRLLYIAPERL 126 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH---TTCCEEEECTTSCHHHHHHHHHHHHH-TCCSEEEECHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHH
Confidence 35789999999888777777743 48899999999998887777777663 4466777776543
No 135
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=29.26 E-value=1.2e+02 Score=21.39 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=38.4
Q ss_pred CCCCeEEEEecc-HHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 78 LTQHRALIFCQL-RAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 78 ~~~~KvlIFsq~-~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
....+|+||+.. -.....+..+|.. .++.|..++=...+..++.+.........+.++++.
T Consensus 13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~---~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~ 74 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCMRALALLKR---KGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFID 74 (99)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHHH---HTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEET
T ss_pred cCCCCEEEEEcCCChhHHHHHHHHHH---CCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEEC
Confidence 467899999754 3456777777744 367788888777766666655544123445555554
No 136
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=28.49 E-value=74 Score=30.66 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=47.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhc-CCCCeeEEEecccc
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVLLLTTQV 144 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~-~~~~~~vlLlst~~ 144 (292)
+.++||.++....+.-..+.|... |+.+..++|+.+..++..+..... ..+.+.++++++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~ 146 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEK 146 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhH
Confidence 468999999998877777777443 889999999999988888777774 24567788877753
No 137
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=27.82 E-value=2.9e+02 Score=23.76 Aligned_cols=101 Identities=8% Similarity=-0.035 Sum_probs=60.0
Q ss_pred cccccccCCHHH-HHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEE
Q psy15261 34 LSDIRHAAKLPA-LKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYL 111 (292)
Q Consensus 34 ~~~~~~S~Kl~~-L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~ 111 (292)
+..-..+||-.+ +.-++..+.- ...+.++||.+.....+.-+.+.+.+. ...++.+.
T Consensus 63 v~~~TGsGKT~~~~~~~~~~l~~---------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (394)
T 1fuu_A 63 AQAQSGTGKTGTFSIAALQRIDT---------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 121 (394)
T ss_dssp ECCCSSHHHHHHHHHHHHHHCCT---------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred EECCCCChHHHHHHHHHHHHhhc---------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 345567888866 4445554420 124679999999988776665555331 33578899
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCCCCEEEEeC
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTGADTVIFVD 161 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~a~~vI~~d 161 (292)
.++|+.+..+....+. ...|+++++...- ..+.+...+.||+=|
T Consensus 122 ~~~g~~~~~~~~~~~~------~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 122 ACIGGTSFVEDAEGLR------DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp EECSSCCHHHHHHHHH------HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEeCCCchHHHHhhcC------CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 9999988765544333 2356666654421 123445556666544
No 138
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=27.79 E-value=33 Score=23.95 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=26.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.+ ++++|||+.-.........|... |+.+..++|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~---G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAE---GYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHH---TCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHc---CCcEEEEcccHH
Confidence 35 88999999877666677777443 566777888753
No 139
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.78 E-value=38 Score=26.05 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=27.8
Q ss_pred CCCCCeEEEEeccH--HHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 77 ILTQHRALIFCQLR--AMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 77 ~~~~~KvlIFsq~~--~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
+..+.++||||..- .........|.. .|+.+..++|++
T Consensus 69 l~~~~~ivvyC~~g~~~rs~~aa~~L~~---~G~~v~~l~GG~ 108 (144)
T 3nhv_A 69 LSKEKVIITYCWGPACNGATKAAAKFAQ---LGFRVKELIGGI 108 (144)
T ss_dssp CCTTSEEEEECSCTTCCHHHHHHHHHHH---TTCEEEEEESHH
T ss_pred CCCCCeEEEEECCCCccHHHHHHHHHHH---CCCeEEEeCCcH
Confidence 34678999999976 355566666733 477889999985
No 140
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=27.02 E-value=97 Score=26.26 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~ 117 (292)
..+++++|||..-.........|. ...|+ .+..++|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~--~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLK--YLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHH--TTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHH--HHcCCCCcceeCchH
Confidence 457899999998776666667773 03466 577889985
No 141
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.93 E-value=1.4e+02 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=15.3
Q ss_pred ceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEec
Q psy15261 108 VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141 (292)
Q Consensus 108 ~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLls 141 (292)
+..+.++-.++...-.++++..+....+.+++++
T Consensus 47 ~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 47 PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3455555555443333444444433334444444
No 142
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=25.87 E-value=84 Score=23.19 Aligned_cols=16 Identities=6% Similarity=-0.213 Sum_probs=7.8
Q ss_pred CCChhhHHHHhHhhhh
Q psy15261 163 DWSPMKDLQAMDRAHR 178 (292)
Q Consensus 163 ~wnp~~~~Qa~gR~~R 178 (292)
|+++....+++.++.|
T Consensus 119 P~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 119 PVNYENFANAIRQLGL 134 (152)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555554444443
No 143
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.58 E-value=1.3e+02 Score=21.53 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=18.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHh
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLF 101 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~ 101 (292)
...++||.-........+...|.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~ 30 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIR 30 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHH
Confidence 45678888888888888888883
No 144
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=25.44 E-value=33 Score=24.70 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~ 117 (292)
...++++|||..-.........|.. .|+. +..++|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~---~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRS---AGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHH---TTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHH---cCCcCEEEecCCH
Confidence 3567899999987777777777744 3553 67788875
No 145
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=25.13 E-value=40 Score=26.83 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=33.4
Q ss_pred CCCeEEEEeccHHHHHH-HHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc
Q psy15261 79 TQHRALIFCQLRAMLDI-VENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG 145 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~-l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~ 145 (292)
.+.++||.+.....++- +.+.+......++.+..++|+.....+...+. . ...|+++++...
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~---~~~i~v~T~~~l 143 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV--K---SCDIIISTAQIL 143 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH--H---HCSEEEEEHHHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc--c---CCCEEEECHHHH
Confidence 36789999998776554 44444332333678888888754322211111 1 245777766543
No 146
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.12 E-value=1.9e+02 Score=20.63 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV 144 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~ 144 (292)
...++||..........+...|.. .|+.+.... +.. ..+..... ..+.++|+....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~---~g~~v~~~~---~~~---~a~~~l~~-~~~dlii~d~~l 61 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSD---AGFHIISAD---SGG---QCIDLLKK-GFSGVVLLDIMM 61 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH---TTCEEEEES---SHH---HHHHHHHT-CCCEEEEEESCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH---CCeEEEEeC---CHH---HHHHHHHh-cCCCEEEEeCCC
Confidence 467899999999999999999844 355543322 122 23333332 235666665443
No 147
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.02 E-value=1e+02 Score=20.67 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=23.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
.++.+++|||..-.........|....... +..+ |+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~--v~~l-GG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTH--VENA-GGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSS--EEEE-EET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCC--EEec-cCH
Confidence 356889999998766667777775443332 3344 654
No 148
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=24.71 E-value=1.1e+02 Score=21.78 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=12.7
Q ss_pred CCeEEEEeccHHHHHHHHHHH
Q psy15261 80 QHRALIFCQLRAMLDIVENDL 100 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L 100 (292)
..++||..........+...|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L 27 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYL 27 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHH
Confidence 455666666666666666666
No 149
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=24.70 E-value=3e+02 Score=22.78 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc------ccccCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG------GLGLNL 151 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~------~~GlnL 151 (292)
.+.++||.+..+..+.-+.+.+.+. ...++.+..+.|+.........+ .. +++|+++++... ..++.+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~~Iiv~Tp~~l~~~~~~~~~~~~ 199 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN--GINIIVATPGRLLDHMQNTPGFMY 199 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH--CCSEEEECHHHHHHHHHHCTTCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC--CCCEEEEcHHHHHHHHHccCCccc
Confidence 4678999999988766555555332 34577888899988765443332 22 256777764322 234667
Q ss_pred CCCCEEEEeC
Q psy15261 152 TGADTVIFVD 161 (292)
Q Consensus 152 ~~a~~vI~~d 161 (292)
.....+|+=|
T Consensus 200 ~~l~~lViDE 209 (262)
T 3ly5_A 200 KNLQCLVIDE 209 (262)
T ss_dssp TTCCEEEECS
T ss_pred ccCCEEEEcC
Confidence 7777776643
No 150
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=24.36 E-value=39 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=26.7
Q ss_pred CCCCeEEEEeccHHH--HHHHHHHHhccCCCCceEEEEECCC
Q psy15261 78 LTQHRALIFCQLRAM--LDIVENDLFKCEMPGVTYLRLDGSV 117 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~--l~~l~~~L~~~~~~~~~~~~i~G~~ 117 (292)
..+++++|||..-.. .......|.. .|+.+..+.|++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~---~G~~v~~l~GG~ 107 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLS---AGFEAYELAGAL 107 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHH---HTCEEEEETTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHH---cCCeEEEeCCcH
Confidence 457899999987655 5566666743 367788888985
No 151
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=23.90 E-value=2.8e+02 Score=23.19 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=59.5
Q ss_pred CcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEE
Q psy15261 33 NLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYL 111 (292)
Q Consensus 33 ~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~ 111 (292)
.+..-..+||-.+....+.. .+.++||.++....+.-+.+.+.+. ...+..+.
T Consensus 35 lv~~~TGsGKT~~~~~~~~~--------------------------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~ 88 (337)
T 2z0m_A 35 VVRAKTGSGKTAAYAIPILE--------------------------LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVA 88 (337)
T ss_dssp EEECCTTSSHHHHHHHHHHH--------------------------HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred EEEcCCCCcHHHHHHHHHHh--------------------------hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEE
Confidence 34455678898766555544 2568999999988776666666332 34567888
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCeeEEEecccccc-----cccCCCCCCEEEEeC
Q psy15261 112 RLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-----LGLNLTGADTVIFVD 161 (292)
Q Consensus 112 ~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~-----~GlnL~~a~~vI~~d 161 (292)
.++|+.+...... .+. +..|+++++.... ..+++...+.||+=|
T Consensus 89 ~~~~~~~~~~~~~---~~~---~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 137 (337)
T 2z0m_A 89 EVYGGMPYKAQIN---RVR---NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDE 137 (337)
T ss_dssp EECTTSCHHHHHH---HHT---TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEES
T ss_pred EEECCcchHHHHh---hcC---CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEC
Confidence 9999887654432 233 2467777755422 123455566666543
No 152
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=22.83 E-value=93 Score=24.97 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=55.1
Q ss_pred ccccccCCHHH-HHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEeccHHHHHHHHHHHhcc-CCC----Cc
Q psy15261 35 SDIRHAAKLPA-LKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKC-EMP----GV 108 (292)
Q Consensus 35 ~~~~~S~Kl~~-L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvlIFsq~~~~l~~l~~~L~~~-~~~----~~ 108 (292)
..-..|||-.+ +.-++..+.- ...+.++||.+.....+.-+.+.+... ... ++
T Consensus 47 ~a~TGsGKT~~~~~~~l~~l~~---------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 47 QSQTGTGKTHAYLLPIMEKIKP---------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp ECCSSHHHHHHHHHHHHHHCCT---------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred ECCCCChHHHHHHHHHHHHHHh---------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 44567888876 4445555420 124578999999888766555544221 111 67
Q ss_pred eEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccccc-----ccCCCCCCEEEE
Q psy15261 109 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGL-----GLNLTGADTVIF 159 (292)
Q Consensus 109 ~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~-----GlnL~~a~~vI~ 159 (292)
.+..+.|+.+..+. .+.+. .++.|+++++...-. .+++...+.+|+
T Consensus 106 ~~~~~~g~~~~~~~---~~~~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 106 VARCLIGGTDKQKA---LEKLN--VQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CEEEECCCSHHHHT---TCCCS--SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEEEEeCCCCHHHH---HHHcC--CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 88888888754321 11222 245677777543221 234555565555
No 153
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=22.48 E-value=65 Score=23.18 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=27.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~ 118 (292)
.++++++|||..-.........|... |+.-..++|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~---G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHEL---GYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHT---TCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHC---CCCEEEecCCHH
Confidence 46788999998877766777777544 443377889853
No 154
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.29 E-value=1.6e+02 Score=21.12 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT 142 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst 142 (292)
...++||..........+...|.. .|+.+..... .. ..+..... ..+.++|+..
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~---~g~~v~~~~~---~~---~a~~~l~~-~~~dlvi~d~ 56 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEK---DGFNVIWAKN---EQ---EAFTFLRR-EKIDLVFVDV 56 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGG---GTCEEEEESS---HH---HHHHHHTT-SCCSEEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh---CCCEEEEECC---HH---HHHHHHhc-cCCCEEEEeC
Confidence 356899999999999999999843 4665543221 11 23444442 3456677665
No 155
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=22.23 E-value=86 Score=21.92 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=41.9
Q ss_pred ECCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCCCCEEEEeCCCCChhhHHHHhHhhhhcCCc-ceEEEEEEE
Q psy15261 114 DGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK-KVVNVYRLI 191 (292)
Q Consensus 114 ~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~-~~V~Vy~lv 191 (292)
|--++.++.++++++|+-... ..- +..++-..+.+.+...+.| ++-|-+.+ ..-..||++
T Consensus 12 H~iLs~eEk~~lL~~y~i~~~qLPr-I~~~DPvar~~G~k~GdVv-----------------kI~R~S~taG~~v~YR~V 73 (78)
T 1hmj_A 12 HEIVPKEEVEEILKRYNIKIQQLPK-IYEDDPVIQEIGAKEGDVV-----------------RVIRKSPTAGVSIAYRLV 73 (78)
T ss_pred eEECCHHHHHHHHHHcCCCHHHCCe-eeCcCHhhHHhCCCCCCEE-----------------EEEECCCCCCCcEEEEEE
Confidence 334678899999999984322 222 3456777777777666655 44555555 456778888
Q ss_pred eCCC
Q psy15261 192 TKNT 195 (292)
Q Consensus 192 ~~~T 195 (292)
..+.
T Consensus 74 v~~~ 77 (78)
T 1hmj_A 74 IKRI 77 (78)
T ss_pred Eecc
Confidence 7654
No 156
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.05 E-value=3.9e+02 Score=23.14 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=47.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhcc-CCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEeccccc-----ccccCCC
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNLT 152 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~-~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~-----~~GlnL~ 152 (292)
.+.++||.+.....+.-+.+.+... ...++.+..++|+....... .... ....|+++++... ....++.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--~~~~Ivv~T~~~l~~~~~~~~~~~~ 162 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI---LRLN--ETVHILVGTPGRVLDLASRKVADLS 162 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHH---HHTT--SCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---HHhc--CCCCEEEEchHHHHHHHHhCCcccc
Confidence 4568999999988766665555332 33478888999988754322 2222 3456777765432 1224455
Q ss_pred CCCEEEEeCC
Q psy15261 153 GADTVIFVDH 162 (292)
Q Consensus 153 ~a~~vI~~d~ 162 (292)
..+.||+=|.
T Consensus 163 ~~~~vIiDEa 172 (400)
T 1s2m_A 163 DCSLFIMDEA 172 (400)
T ss_dssp TCCEEEEESH
T ss_pred cCCEEEEeCc
Confidence 5666666443
No 157
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=21.96 E-value=1.5e+02 Score=21.47 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=35.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccc
Q psy15261 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV 144 (292)
Q Consensus 79 ~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~ 144 (292)
...++||..........+...|.. .++.+....-.. .. +.++... ...+.++|+....
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~---~~~~~~v~~~~~-~~---~a~~~l~-~~~~dlii~D~~l 61 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDR---KDIHCQLEFVDN-GA---KALYQVQ-QAKYDLIILDIGL 61 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHH---TTCCEEEEEESS-HH---HHHHHHT-TCCCSEEEECTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh---cCCCeeEEEECC-HH---HHHHHhh-cCCCCEEEEeCCC
Confidence 357899999999999999999944 355533322222 12 3344444 2446777776554
No 158
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=21.41 E-value=41 Score=25.73 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=25.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~~ 118 (292)
...+++||||..-.........|.. .|+ .+..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~---~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATE---AGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHH---TTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHH---cCCcceEEEcCChh
Confidence 4568899999876656666667743 366 4788889863
No 159
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=21.04 E-value=85 Score=22.82 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=45.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCH-HHHHHHHHHhcCCCCeeEEEeccccccccc-CCCCCCEE
Q psy15261 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVS-TARHAIVTKFNSDPTIDVLLLTTQVGGLGL-NLTGADTV 157 (292)
Q Consensus 80 ~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~-~~R~~~v~~F~~~~~~~vlLlst~~~~~Gl-nL~~a~~v 157 (292)
|..+..+......+..+.. ...+..+.++-.++. ..-..+++..+..+.+.+++++......-. ....+...
T Consensus 29 g~~v~~~~~~~~a~~~l~~------~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 102 (140)
T 3h5i_A 29 GYTVEIALTGEAAVEKVSG------GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAY 102 (140)
T ss_dssp TCEEEEESSHHHHHHHHHT------TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEE
T ss_pred CCEEEEecChHHHHHHHhc------CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCc
Confidence 5566666655555544432 123556677655432 122223333332245667776644322111 11223334
Q ss_pred EEeCCCCChhhHHHHhHhhhh
Q psy15261 158 IFVDHDWSPMKDLQAMDRAHR 178 (292)
Q Consensus 158 I~~d~~wnp~~~~Qa~gR~~R 178 (292)
-++.-|+++....+++.++.+
T Consensus 103 ~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 103 GYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EEEETTCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 455567777777777666654
No 160
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=20.95 E-value=66 Score=22.92 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=27.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCc-eEEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~-~~~~i~G~~~ 118 (292)
..+++++|||..-.........|... |+ .+..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~---G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQ---GYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHH---TCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHc---CCceEEEecCCHH
Confidence 35688999999866666667777443 55 3678888853
No 161
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=20.17 E-value=40 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=26.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHhccCCCCce-EEEEECCCC
Q psy15261 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVT-YLRLDGSVV 118 (292)
Q Consensus 78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~-~~~i~G~~~ 118 (292)
..+++++|||..-.........|... |+. +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~---G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHA---GFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHH---HCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHc---CCCCeEEeCCcHH
Confidence 45789999999866666666667443 443 677899863
Done!