Your job contains 1 sequence.
>psy15261
SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG
MSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVST
ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIG
QKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD
SRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLNPMPSSTE
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15261
(292 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 698 8.0e-69 1
ZFIN|ZDB-GENE-021025-1 - symbol:btaf1 "BTAF1 RNA polymera... 711 9.0e-69 1
FB|FBgn0022787 - symbol:Hel89B "Helicase 89B" species:722... 710 1.2e-68 1
UNIPROTKB|I3LD21 - symbol:I3LD21 "Uncharacterized protein... 700 1.3e-67 1
UNIPROTKB|F1SCA0 - symbol:BTAF1 "Uncharacterized protein"... 700 1.3e-67 1
UNIPROTKB|I3LTQ1 - symbol:I3LTQ1 "Uncharacterized protein... 700 1.3e-67 1
UNIPROTKB|E2QWL4 - symbol:BTAF1 "Uncharacterized protein"... 699 1.7e-67 1
UNIPROTKB|F1NHJ5 - symbol:BTAF1 "Uncharacterized protein"... 698 2.2e-67 1
UNIPROTKB|O14981 - symbol:BTAF1 "TATA-binding protein-ass... 698 2.2e-67 1
RGD|1564130 - symbol:Btaf1 "BTAF1 RNA polymerase II, B-TF... 693 7.4e-67 1
UNIPROTKB|F1N507 - symbol:Bt.112326 "Uncharacterized prot... 686 4.1e-66 1
DICTYBASE|DDB_G0286219 - symbol:DDB_G0286219 "putative TB... 645 8.5e-63 2
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 652 1.8e-62 1
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 623 2.4e-59 1
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 604 2.4e-57 1
ASPGD|ASPL0000018137 - symbol:AN4187 species:162425 "Emer... 600 6.3e-57 1
WB|WBGene00000274 - symbol:btf-1 species:6239 "Caenorhabd... 454 1.8e-41 1
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 273 1.4e-26 3
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 268 4.2e-25 2
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 268 1.1e-24 2
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 252 3.0e-24 2
UNIPROTKB|Q9NW36 - symbol:HELLS "cDNA FLJ10339 fis, clone... 247 1.0e-23 2
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 274 1.3e-23 2
UNIPROTKB|F5H493 - symbol:ERCC6 "DNA excision repair prot... 261 2.9e-23 2
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 264 3.6e-23 2
RGD|1309820 - symbol:Hells "helicase, lymphoid specific" ... 254 5.8e-23 2
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 269 6.7e-23 2
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 265 6.9e-23 2
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 263 8.3e-23 2
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 270 8.8e-23 2
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 262 1.1e-22 2
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 261 1.4e-22 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 246 1.4e-22 2
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 266 2.0e-22 2
UNIPROTKB|E1BFL2 - symbol:ERCC6 "Uncharacterized protein"... 259 2.2e-22 2
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 253 2.4e-22 2
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 250 2.4e-22 2
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 253 2.7e-22 2
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 253 2.7e-22 2
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 258 2.8e-22 2
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 257 3.0e-22 2
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 257 3.0e-22 2
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 256 3.1e-22 2
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 262 3.2e-22 2
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 262 3.2e-22 2
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 262 3.2e-22 2
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 262 3.2e-22 2
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 262 3.2e-22 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 262 3.2e-22 2
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 262 3.2e-22 2
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 253 5.3e-22 3
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 244 6.4e-22 2
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 253 6.7e-22 2
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 253 6.9e-22 2
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 253 7.1e-22 2
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 251 8.4e-22 2
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 245 1.3e-21 2
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 253 1.4e-21 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 255 1.5e-21 2
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 251 1.5e-21 2
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 251 1.6e-21 2
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 251 1.6e-21 3
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 248 1.7e-21 2
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 244 1.7e-21 2
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 262 1.8e-21 2
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 245 1.9e-21 2
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 247 1.9e-21 2
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 245 2.0e-21 2
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 245 2.0e-21 2
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 245 2.0e-21 2
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 245 2.0e-21 2
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 245 2.0e-21 2
CGD|CAL0001763 - symbol:orf19.1871 species:5476 "Candida ... 251 2.0e-21 2
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 245 2.1e-21 2
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 243 2.1e-21 2
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 249 2.1e-21 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 247 2.1e-21 2
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 245 2.2e-21 2
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 254 2.2e-21 2
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 253 2.2e-21 2
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 253 2.3e-21 2
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 261 2.4e-21 1
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 244 2.5e-21 2
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 250 2.5e-21 2
MGI|MGI:106209 - symbol:Hells "helicase, lymphoid specifi... 248 2.5e-21 2
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 253 2.8e-21 2
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 257 2.8e-21 2
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 253 2.8e-21 2
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 253 3.0e-21 2
WB|WBGene00000482 - symbol:chd-3 species:6239 "Caenorhabd... 252 3.2e-21 2
UNIPROTKB|Q22516 - symbol:chd-3 "Chromodomain-helicase-DN... 252 3.2e-21 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 245 3.3e-21 2
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 253 3.7e-21 2
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 239 3.8e-21 2
FB|FBgn0262519 - symbol:Mi-2 species:7227 "Drosophila mel... 238 4.1e-21 2
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 244 4.4e-21 2
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 248 4.7e-21 2
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 245 4.9e-21 2
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 257 5.3e-21 1
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 243 5.6e-21 2
WARNING: Descriptions of 416 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 143/287 (49%), Positives = 189/287 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H +++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 399 ALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 457
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG S++ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 458 NGSTSESGTE--------SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 509
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 510 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 569
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 570 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 629
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + +K +L+ L NF+ SL
Sbjct: 630 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 676
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 711 (255.3 bits), Expect = 9.0e-69, P = 9.0e-69
Identities = 145/267 (54%), Positives = 189/267 (70%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEAL---VSRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H +Y+ + +S +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1581 ALQYLRKLCNHPALVLTPQHPEYKHITEQLSTQHSSLRDIQHAPKLSALKQLLLDCGLG- 1639
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
S G S SG +++ QHR LIFCQL++MLDIVE DL K ++PGVTYLRLDGSV
Sbjct: 1640 SAGASDSGTE--------AVVAQHRVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSV 1691
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
+ RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1692 QAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1751
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++L+LF LD
Sbjct: 1752 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENASLQSMGTEQLLNLFTLD 1811
Query: 238 GQDSRQEAGSSGTNPG--GLKGLLDTL 262
D ++ S ++ G +K +LD L
Sbjct: 1812 KDDKAEKCDGSSSSSGKSSMKSVLDGL 1838
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 710 (255.0 bits), Expect = 1.2e-68, P = 1.2e-68
Identities = 159/292 (54%), Positives = 192/292 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLN---LSDIRHAAKLPALKQLLMDCGIGA 57
+LRYLQ+VCNHPKLVL S + + S+ L+ L DI H+AKLPALKQLL+DCGIG
Sbjct: 1649 ALRYLQNVCNHPKLVLRQSE-ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGV 1707
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
++QHRALIFCQL+AMLDIVE DL + +P VTYLRLDGSV
Sbjct: 1708 QT----------------ESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSV 1751
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
++ R IV FNSDP+IDV ADTVIFV+HDW+PMKDLQAMDRAH
Sbjct: 1752 PASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAH 1811
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQKKVVNVYRLIT+N+LEEKIM LQKFK+LTANTV+++EN +L TM T +I DLF
Sbjct: 1812 RIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQIFDLFN-G 1870
Query: 238 GQDSRQEAGSS---GTNPGGLK--GLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
G+D E+GSS GT GG+ +++ LP NFVQ+L
Sbjct: 1871 GKDKGAESGSSAVQGTASGGMSMNTIIENLPELWSEHQYEEEYDLGNFVQAL 1922
>UNIPROTKB|I3LD21 [details] [associations]
symbol:I3LD21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754
Ensembl:ENSSSCT00000029375 Uniprot:I3LD21
Length = 1845
Score = 700 (251.5 bits), Expect = 1.3e-67, P = 1.3e-67
Identities = 144/287 (50%), Positives = 190/287 (66%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H ++++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1567 ALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 1625
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG SI+ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1626 NGSTSESGTE--------SIVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1677
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1678 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1737
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1738 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1797
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + +K +L+ L NF+ SL
Sbjct: 1798 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 1844
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 700 (251.5 bits), Expect = 1.3e-67, P = 1.3e-67
Identities = 144/287 (50%), Positives = 190/287 (66%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H ++++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1572 ALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 1630
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG SI+ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1631 NGSTSESGTE--------SIVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1682
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1683 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1742
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1743 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1802
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + +K +L+ L NF+ SL
Sbjct: 1803 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 1849
>UNIPROTKB|I3LTQ1 [details] [associations]
symbol:I3LTQ1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754
Ensembl:ENSSSCT00000027675 OMA:ISESSME Uniprot:I3LTQ1
Length = 1850
Score = 700 (251.5 bits), Expect = 1.3e-67, P = 1.3e-67
Identities = 144/287 (50%), Positives = 190/287 (66%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H ++++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1572 ALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 1630
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG SI+ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1631 NGSTSESGTE--------SIVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1682
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1683 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1742
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1743 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1802
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + +K +L+ L NF+ SL
Sbjct: 1803 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 1849
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 699 (251.1 bits), Expect = 1.7e-67, P = 1.7e-67
Identities = 143/287 (49%), Positives = 190/287 (66%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H ++++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1571 ALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 1629
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG S++ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1630 NGSTSESGTE--------SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1681
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1682 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1741
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1742 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1801
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + +K +L+ L NF+ SL
Sbjct: 1802 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 1848
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 698 (250.8 bits), Expect = 2.2e-67, P = 2.2e-67
Identities = 144/289 (49%), Positives = 193/289 (66%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLN---LSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL H +Y+ + + + L DI+HA KL ALKQLL+DCG+G
Sbjct: 1565 ALQYLRKLCNHPALVLTTQHPEYKRITEQLAAHNSSLRDIQHAPKLSALKQLLLDCGLG- 1623
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ G S SG +++ QHR LIFCQL++MLDIVE+DL + ++P VTYLRLDGS+
Sbjct: 1624 NGGSSESGTE--------AVVAQHRILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSI 1675
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
+ RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1676 PAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1735
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1736 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENASLQSMGTEQLLDLFTLD 1795
Query: 238 GQDSRQEAGSSGTNPG--GLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
+D + E + T+ G +K +L+ L NF+ SL
Sbjct: 1796 KKDGKTEKPDTSTSSGKASMKSVLENLGELWDQEQYDTEYSLENFMHSL 1844
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 698 (250.8 bits), Expect = 2.2e-67, P = 2.2e-67
Identities = 143/287 (49%), Positives = 189/287 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H +++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1571 ALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 1629
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG S++ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1630 NGSTSESGTE--------SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1681
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1682 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1741
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1742 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1801
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + +K +L+ L NF+ SL
Sbjct: 1802 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 1848
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 693 (249.0 bits), Expect = 7.4e-67, P = 7.4e-67
Identities = 142/287 (49%), Positives = 189/287 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H +++ + + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1570 ALQYLRKLCNHPALVLTPQHPEFKNTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 1628
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+G + G S++ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1629 ------NGTSSESGTE--SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1680
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1681 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1740
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1741 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1800
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A SS + +K +L+ L F++SL
Sbjct: 1801 KDGKAEKADSSTSGKASMKSVLENLSDLWDAEQYDSEYNLETFMRSL 1847
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 686 (246.5 bits), Expect = 4.1e-66, P = 4.1e-66
Identities = 142/287 (49%), Positives = 187/287 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSR---PGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +CNHP LVL P H +++ + +L DI+HA KL ALKQLL+DCG+G
Sbjct: 1567 ALQYLRKLCNHPALVLTPQHPEFKNTTEKLAAQNSSLHDIQHAPKLSALKQLLLDCGLG- 1625
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
+ S SG S++ QHR LIFCQL++MLDIVE+DL K +P VTYLRLDGS+
Sbjct: 1626 NGSTSESGTE--------SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 1677
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
RH+IV++FN+DP+IDV ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct: 1678 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 1737
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQ KVVNVYRLIT+ TLEEKIM LQKFK+ ANTVI+ EN +L +M T ++LDLF LD
Sbjct: 1738 RIGQVKVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1797
Query: 238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
++A +S + ++ +L+ L NF+ SL
Sbjct: 1798 KDGKAEKADTSTSGKTSMRSILENLSDLWDQEQYDSEYSLENFMHSL 1844
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 645 (232.1 bits), Expect = 8.5e-63, Sum P(2) = 8.5e-63
Identities = 136/262 (51%), Positives = 171/262 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
+L+YL+ +C HP VL P H QY +++ L ++ DI H+ KL +LK+LL++CGIG
Sbjct: 1689 ALQYLRKLCGHPSFVLNPEHPQYPSIMKEFKLQPNDILDIAHSPKLVSLKELLLECGIGL 1748
Query: 58 SPGMSGSGPHYDPGAPPPSILT--------QHRALIFCQLRAMLDIVENDLFKCEMPGVT 109
S A + QHR LIF Q+++MLDIVEN+LFK +P VT
Sbjct: 1749 SNVQQQQHQQQSKAAIAAATANETINESTNQHRVLIFAQMKSMLDIVENELFKKHLPSVT 1808
Query: 110 YLRLDGSVVSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKD 169
YLR+DGSV + RH+IV +FNSDPTIDV ADTVIF++HDW+PMKD
Sbjct: 1809 YLRMDGSVETMKRHSIVNQFNSDPTIDVLLLTTHVGGLGLNLTGADTVIFLEHDWNPMKD 1868
Query: 170 LQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGK 229
LQAMDRAHRIGQKKVVNVYRLIT TLEEKIM LQKFKL ANTVIN +N +L TM+T +
Sbjct: 1869 LQAMDRAHRIGQKKVVNVYRLITSGTLEEKIMGLQKFKLNIANTVINHDNSSLQTMSTNE 1928
Query: 230 ILDLFCLDGQDSRQEAGSSGTN 251
+L+LF D D ++ S TN
Sbjct: 1929 LLNLF--DYSDDQKSQQSKSTN 1948
Score = 43 (20.2 bits), Expect = 8.5e-63, Sum P(2) = 8.5e-63
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 240 DSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSLN 285
D+ + +S + G LK +LD+L +NF+ L+
Sbjct: 1960 DTGEVTNNSNASGGKLKNILDSLGELWDESQYTEEFNLNNFMNQLS 2005
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 652 (234.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 135/263 (51%), Positives = 172/263 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSH---AQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+Y++ +CNHP LVL P+H AQ + + + GL+L DI +A KL AL+ LL +CGIG
Sbjct: 1566 ALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECGIGE 1625
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
D P ++++QHRALIFCQL+ MLD+VENDLFK MP VTY+RLDGS+
Sbjct: 1626 ED--IDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSI 1683
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
R +V KFN DP+ID ADTVIFV+HDW+PM DLQAMDRAH
Sbjct: 1684 DPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAH 1743
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQKKVVNVYR+ITK TLEEKIM LQKFK+ A+TV+N +N L +M T ++LDLF D
Sbjct: 1744 RIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLDLFDPD 1803
Query: 238 GQDSRQEAGSSGTNPGGLKGLLD 260
S+ + + KG+ D
Sbjct: 1804 NVTSQDNEEKNNGDSQAAKGMED 1826
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 623 (224.4 bits), Expect = 2.4e-59, P = 2.4e-59
Identities = 135/274 (49%), Positives = 178/274 (64%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALV---SRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+Y++ +CNHP L+L H + A+V ++ L D++HA KL AL QLL DCG+G
Sbjct: 1659 ALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGN 1718
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
S ++ +G D + +++HR LIFCQL+ MLD+VE DL + MP VTY+RLDGSV
Sbjct: 1719 S-SVNSNG--IDSALT--NAVSEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSV 1773
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
T R VTKFN+DP+IDV ADTVIFV+HDW+PM+DLQAMDRAH
Sbjct: 1774 EPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAH 1833
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC-- 235
RIGQKKVVNVYRLIT+ LEEKIM LQ+FK+ A+TV+N +N L ++ T +ILDLF
Sbjct: 1834 RIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTT 1893
Query: 236 ---------LDGQDSRQEAGS--SGTNPGGLKGL 258
+D ++S AG SGT+ L+GL
Sbjct: 1894 ADEQQTVQNIDKEESEDAAGRGLSGTSKKALEGL 1927
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 604 (217.7 bits), Expect = 2.4e-57, P = 2.4e-57
Identities = 131/272 (48%), Positives = 174/272 (63%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQY----EALVSRPGLNLSDIRHAAKLPALKQLLMDCGIG 56
+L+Y++ +CNHP LV+ H +Y + L+SR +L +I HA KL +LK LL++CGIG
Sbjct: 1595 ALQYMRKLCNHPALVMSEQHPKYAEINQFLISR-NTDLRNIEHAPKLLSLKNLLLECGIG 1653
Query: 57 A---------SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPG 107
+ S S ++++HRALIFCQL+ MLDIVEN+L + +P
Sbjct: 1654 SQDSEYNNNVSKKKSLQQQQQQQLISADGVISEHRALIFCQLKDMLDIVENELLRKYLPS 1713
Query: 108 VTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPM 167
VT++RLDGS R +IV KFN DP+IDV ADTVIFV+HDW+PM
Sbjct: 1714 VTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLTGADTVIFVEHDWNPM 1773
Query: 168 KDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMAT 227
DLQAMDRAHR+GQKKVVNVYRLITK+TLEEKIM LQKFK+ A+T++N +N L +M T
Sbjct: 1774 NDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGLQKFKMNIASTIVNQQNAGLQSMDT 1833
Query: 228 GKILDLFCLD--GQDSRQEAG---SSGTNPGG 254
++LDLF +D G ++ E + TN GG
Sbjct: 1834 NQLLDLFDVDDTGNGAKVEEPVKEETDTNGGG 1865
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 600 (216.3 bits), Expect = 6.3e-57, P = 6.3e-57
Identities = 127/257 (49%), Positives = 168/257 (65%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEAL---VSRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
+L+Y++ +CN P LV+ H QY + + L D+ HA KL ALK LL+DCGIG
Sbjct: 1610 ALQYMRRLCNSPALVVKEGHKQYNEVQQYLQEKKSYLRDVSHAPKLSALKDLLLDCGIGV 1669
Query: 58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
P G GA S ++ HRAL+FCQ++ MLDIV++++ + +P V +LRLDG+V
Sbjct: 1670 EPTEGNLGA----GA---SYVSPHRALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAV 1722
Query: 118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
+T R IV +FNSDP+ DV ADTVIFV+HDW+P KD+QAMDRAH
Sbjct: 1723 EATRRQDIVNRFNSDPSYDVLLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAH 1782
Query: 178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
RIGQKKVVNVYRLIT+ TLEEKI+NLQ+FK+ A+TV+N +N L+TM T ++LDLF L
Sbjct: 1783 RIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVNQQNAGLNTMDTDQLLDLFNL- 1841
Query: 238 GQDSRQEAGSSGTNPGG 254
G+ + E T GG
Sbjct: 1842 GETA--ENAEKPTEIGG 1856
>WB|WBGene00000274 [details] [associations]
symbol:btf-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15192 InterPro:IPR022707
Pfam:PF12054 EMBL:Z80344 EMBL:Z82081 GeneTree:ENSGT00630000089754
EMBL:Z82079 RefSeq:NP_496802.2 ProteinModelPortal:G5EF07 SMR:G5EF07
EnsemblMetazoa:F15D4.1 GeneID:174965 KEGG:cel:CELE_F15D4.1
CTD:174965 WormBase:F15D4.1 OMA:ENDAMAS NextBio:886220
Uniprot:G5EF07
Length = 1649
Score = 454 (164.9 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 110/260 (42%), Positives = 152/260 (58%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHA--AKLPALKQLLMDCGIGASPGMS 62
L+ + +H KLV H A + P LS A K+ ALKQLL++C I +P
Sbjct: 1372 LRKLTDHTKLV----HDTL-AKIGAPQYILSKALAAKSGKMEALKQLLIECEICKNPDEE 1426
Query: 63 GSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGV-TYLRLDGSVVSTA 121
P D G + + HRALIFCQ + +V + L E V ++L LDGSV +
Sbjct: 1427 VEQPE-DLGG---LVASGHRALIFCQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGD 1482
Query: 122 RHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQ 181
R +V +FN D TIDV ADTVIF+DHDW+PMKDLQA+DRAHR+GQ
Sbjct: 1483 RMKMVNRFNEDKTIDVLILTTHVGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQ 1542
Query: 182 KKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDS 241
+ VNVYRLIT+ T+EEK+M+L KFKL TA +I ++N ++ TM TG+++++F LDG ++
Sbjct: 1543 TRNVNVYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTMETGELMNMFTLDGDEA 1602
Query: 242 RQEAGSSGTNPGGLKGLLDT 261
+++ G G P K T
Sbjct: 1603 KKKPG--GGEPAAKKSKKST 1620
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 273 (101.2 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 62/163 (38%), Positives = 85/163 (52%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVX 138
T H+ L+F Q R MLDI+E F + G Y R+DG+ R +V +FN DP + V
Sbjct: 751 TGHKTLLFAQHRIMLDILEK--FVKSLSGFNYRRMDGTTPIQHRQTMVDEFNKDPDLHVF 808
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
AD VI D DW+P D+QA +RA R+GQK+ V +YRL+T T+EE
Sbjct: 809 LLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTIYRLMTAGTIEE 868
Query: 199 KIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCL--DGQ 239
KI + Q FK N ++ + T + DLF L +GQ
Sbjct: 869 KIYHRQIFKQFLTNKILKDPKQR-QTFQLSDLYDLFALGEEGQ 910
Score = 46 (21.3 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 239 QDSRQEAGSSGTN 251
Q ++QE+G SGTN
Sbjct: 971 QQAKQESGESGTN 983
Score = 44 (20.5 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ +CNHP L ++ L ++P N + + K+ ++ LL
Sbjct: 708 LRKICNHPDL------QNHKLLYAKP--NYGNPTKSGKMQVVRSLL 745
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 268 (99.4 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 68/168 (40%), Positives = 86/168 (51%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q R MLDI+E L K ++P V Y R+DGS R +V FN + DV
Sbjct: 642 HRTLLFSQTRQMLDILEIGL-K-DLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLL 699
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P D QA +RA R+GQKK V VYRL+T T+EEKI
Sbjct: 700 TTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKI 759
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCL-DGQDSRQEAGS 247
+ Q FK N ++ + T + DLF L D + E GS
Sbjct: 760 YHRQIFKQFLTNKILKDPKQRRFFKMTD-LHDLFTLGDNKTEGTETGS 806
Score = 56 (24.8 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ +CNHP LV E L+ + N D + KL ++ LL
Sbjct: 595 LRKICNHPDLVTR------EYLLHKEDYNYGDPEKSGKLKVIRALL 634
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 268 (99.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 60/163 (36%), Positives = 84/163 (51%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPG---VTYLRLDGSVVSTARHAIVTKFNSDPTIDV 137
H+ L+FCQ R MLDI+E + + YLR+DGS + R +V FN DP + V
Sbjct: 630 HKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPISKRQMLVDAFNQDPDMHV 689
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
AD VI D DW+P D+QA +RA R+GQK+ + +YRL+T ++E
Sbjct: 690 FLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQARERAWRLGQKRDITIYRLMTTGSIE 749
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
EKI + Q FK N ++ + A + DLF L QD
Sbjct: 750 EKIYHRQIFKTFLTNKILKDPKQRRFFKAND-LHDLFTLGDQD 791
Score = 53 (23.7 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ +CNHP LV + L+ R N D + K+ LK LL
Sbjct: 585 LRKICNHPDLVYR------DTLMKRK--NYGDPAKSGKMQVLKNLL 622
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 252 (93.8 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 54/137 (39%), Positives = 78/137 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR L+F Q+ ML+++E+ L E G Y R+DGS+ R + +FN DP + V
Sbjct: 603 HRVLLFSQMTKMLNVLEHFL---EGEGYQYDRIDGSIKGDLRQKAIDRFN-DPVSEHFVF 658
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADTVI D DW+P D+QA RAHR+GQKK V +YR +T N++EE
Sbjct: 659 LLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEE 718
Query: 199 KIMNLQKFKLLTANTVI 215
+IM + K K++ + V+
Sbjct: 719 RIMQVAKHKMMLTHLVV 735
Score = 63 (27.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL-NLSDIRHAA-KLPALKQLL 50
L+ CNHP L PS A+ EA +S GL +S + A+ KL L ++L
Sbjct: 551 LRKCCNHPYLF--PSAAE-EATISPSGLYEMSSLTKASGKLDLLSKML 595
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 247 (92.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 52/139 (37%), Positives = 75/139 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ +MLDI+ + C + + RLDGS+ + R + FN+DP + +
Sbjct: 53 HKVLLFSQMTSMLDILMD---YCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLV 109
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 110 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 169
Query: 201 MNLQKFKLLTANTVINSEN 219
+ K +I+ +
Sbjct: 170 VERAAAKRKLEKLIIHKNH 188
Score = 40 (19.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP L+ P
Sbjct: 4 LRKCCNHPYLIEYP 17
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 274 (101.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 60/154 (38%), Positives = 86/154 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HRALIF Q+ MLD++E + + G TY+RLDGS R ++ +FN++P I +
Sbjct: 1092 HRALIFTQMTKMLDVLEAFI---NLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFIL 1148
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QA DR HRIGQ + V++YRLI+++T+EE I
Sbjct: 1149 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1208
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + N VI + N + ++LF
Sbjct: 1209 LKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELF 1242
Score = 44 (20.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ VCNHP L G
Sbjct: 815 LRKVCNHPDLFEG 827
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 261 (96.9 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 62/172 (36%), Positives = 88/172 (51%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q R MLDI+E +F TYL++DG+ +R ++T++N D +I V
Sbjct: 227 RVLLFSQSRQMLDILE--VF-LRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLT 283
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ V+ D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 284 TRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 343
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L D+ Q +S G
Sbjct: 344 HRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLTSPDASQSTETSAIFAG 394
Score = 44 (20.5 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 172 LRKICNHPDLFSG 184
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 264 (98.0 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 61/168 (36%), Positives = 85/168 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ +LDI+E L + G YLRLDG+ R + +FN+D I V
Sbjct: 1008 HRVLIFTQMTKVLDILEQFL---NIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFIL 1064
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QA DR+HRIGQ + V++YRLI++ T+E +
Sbjct: 1065 STRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNM 1124
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSS 248
+ K + VI + +LDLF LD + ++ S
Sbjct: 1125 LRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLDDESLKKVKADS 1172
Score = 45 (20.9 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP L
Sbjct: 733 LMQLRKVCNHPNL 745
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 254 (94.5 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 53/139 (38%), Positives = 76/139 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ +MLDI+ + C + T+ RLDGS+ + R + FN+DP + +
Sbjct: 272 HKVLVFSQMTSMLDILMD---YCHLRNFTFSRLDGSMSYSEREKNIYSFNTDPEVFLFLV 328
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 329 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 388
Query: 201 MNLQKFKLLTANTVINSEN 219
+ K +I+ +
Sbjct: 389 VERAAAKRKLEKLIIHKNH 407
Score = 38 (18.4 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP ++ P
Sbjct: 223 LRKCCNHPYMIEYP 236
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 269 (99.8 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 67/176 (38%), Positives = 94/176 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E ++ + Y+RLDGS +AR +V F + I V
Sbjct: 1173 HRVLIYSQMTKMIDLLEEYMWHRKH---RYMRLDGSSKISARRDMVADFQTRADIFVFLL 1229
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1230 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1289
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDS----RQEAGSSGTNP 252
+ + K VI+ N DT+ +++ L LD ++ RQEA ++P
Sbjct: 1290 LQRAREKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEEIEMKYRQEAKLQSSSP 1344
Score = 40 (19.1 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 831 RKVCNHPEL 839
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 265 (98.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 62/172 (36%), Positives = 87/172 (50%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
+ L+FCQ R MLDIVE + + YLR+DG+ R +V +FN DP++ +
Sbjct: 1131 KVLLFCQTRQMLDIVEQ--YIRDSTQFNYLRMDGTTSIRQRQCLVEQFNIDPSLFIFLLT 1188
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ VI D DW+P D+QA +R +RIGQKK V +YRLIT T+EEKI
Sbjct: 1189 TKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAVTIYRLITLGTIEEKIY 1248
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGS--SGTN 251
+ Q +K N ++ + R + DLF E G SG+N
Sbjct: 1249 HRQIYKQFLTNKILK-DPRQKRFFKSKHFKDLFTYTKNKKGSETGDIFSGSN 1299
Score = 44 (20.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ +CNHP ++ A E RP + +I +AKL ++ +L
Sbjct: 1083 LKKICNHPDIL--HMDASDE---DRPH-DYGNIERSAKLKVVETIL 1122
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 263 (97.6 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
Identities = 68/173 (39%), Positives = 96/173 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVX 138
T HR L+F Q+ +M++I E+ L TYLRLDGS R ++T+FN+ P D+
Sbjct: 865 TGHRILMFFQMTSMMNIFEDFL---NFRRYTYLRLDGSTKPDERGDLLTQFNA-PNSDLF 920
Query: 139 XXXXXXXXXXXXXX--XADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
ADTVI D DW+P +D+QA DRAHRIGQKK V V RLIT N++
Sbjct: 921 LFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSV 980
Query: 197 EEKIMNLQKFKLLTANTVINSENRNLDTMATG----KILD-LFCLDGQDSRQE 244
EEKI+ ++KL VI + D +TG ++L+ + DG++ +E
Sbjct: 981 EEKILAAARYKLNVDEKVIQAGK--FDQRSTGAERKQMLEQIIQADGEEEEEE 1031
Score = 44 (20.5 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 4 YLQSVCNHPKLV--LGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
+L+ +CNHP L + S Y + G +L +R A KL L ++L
Sbjct: 813 HLRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDL--MRVAGKLELLDRIL 859
Score = 40 (19.1 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 31 GLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSG 65
GL +D RHA K LKQ L A PG G
Sbjct: 51 GLQ-NDHRHA-KAVLLKQKLQSGLPDAVPGQENGG 83
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 270 (100.1 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 60/137 (43%), Positives = 74/137 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HRALIF Q+ MLDI E L + TYLRLDGS R + +FN+DP I +
Sbjct: 1396 HRALIFTQMTKMLDIFETFL---NLHAYTYLRLDGSTKIDKRQVLTERFNTDPKIFLFIL 1452
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QA DR HRIGQ + VN+YR IT++T+EE I
Sbjct: 1453 STRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHTIEENI 1512
Query: 201 MNLQKFKLLTANTVINS 217
+ K VI +
Sbjct: 1513 LKKSNQKRQLDKMVIKA 1529
Score = 44 (20.5 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP L
Sbjct: 1057 LMQLRKVCNHPDL 1069
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 262 (97.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 63/173 (36%), Positives = 87/173 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L F Q R ML I+E +F + +YLR+DG+ +R ++T++N D +I +
Sbjct: 852 HRVLFFTQSRQMLQILE--VFLRDR-NYSYLRMDGTTTIASRQPLITRYNEDKSIFIFLL 908
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 909 TTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 968
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L D Q +S G
Sbjct: 969 YHRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLSSPDVSQGTETSAIFAG 1020
Score = 44 (20.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 797 LRKICNHPDLFSG 809
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 261 (96.9 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 62/172 (36%), Positives = 88/172 (51%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q R MLDI+E +F TYL++DG+ +R ++T++N D +I V
Sbjct: 857 RVLLFSQSRQMLDILE--VF-LRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLT 913
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ V+ D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 914 TRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 973
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L D+ Q +S G
Sbjct: 974 HRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLTSPDASQSTETSAIFAG 1024
Score = 44 (20.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 802 LRKICNHPDLFSG 814
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 246 (91.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 70/187 (37%), Positives = 90/187 (48%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXXX 140
R LIF Q+ +LDI+E+ C Y R+DGS R + +N+ D V
Sbjct: 520 RVLIFSQMSRLLDILED---YCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLL 576
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD V+ D DW+P DLQAMDRAHRIGQKK V V+RL+T N++EEKI
Sbjct: 577 TTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKI 636
Query: 201 MNLQKFKLLTANTVINSENRNL---DTMATGK--ILDLFCLDGQD---SRQEAGSSGT-N 251
+ KL VI +L + A K +L + D S GS+GT
Sbjct: 637 LERATQKLRLDQLVIQQNRTSLKKKENKADSKDALLSMIQHGAADVFKSGTSTGSAGTPE 696
Query: 252 PG-GLKG 257
PG G KG
Sbjct: 697 PGSGEKG 703
Score = 56 (24.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 3 RYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRH-AAKLPALKQLLMDCGIGASPGM 61
RYL N K L + ++E L+S GL I AAK P +Q+L + G
Sbjct: 89 RYLLKDANGKKFDLEGTTKRFEHLLSLSGLFKHFIESKAAKDPKFRQVLDVLEENKANG- 147
Query: 62 SGSGPHYD 69
G G H D
Sbjct: 148 KGKGKHQD 155
Score = 38 (18.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 5 LQSVCNHPKLV----LGPSHAQYEALV 27
L+ CNHP L GP + E LV
Sbjct: 472 LRKCCNHPYLFDGAEPGPPYTTDEHLV 498
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 266 (98.7 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 64/160 (40%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F S I V
Sbjct: 1149 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQSRTDIFVFLL 1205
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1206 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1265
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1266 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1304
Score = 38 (18.4 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 6 QSVCNHPKL 14
+ VCNHP L
Sbjct: 814 RKVCNHPDL 822
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 259 (96.2 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 62/172 (36%), Positives = 88/172 (51%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q R MLDI+E +F +YL++DG+ +R ++T++N D +I V
Sbjct: 848 RVLLFSQSRQMLDILE--VF-LRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLT 904
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ VI D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 905 TRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 964
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L D+ Q +S G
Sbjct: 965 HRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLSSPDTSQSTETSAIFAG 1015
Score = 44 (20.5 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 793 LRKICNHPDLFSG 805
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 253 (94.1 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1072 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1128
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1129 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1188
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1189 EKILAAAKYKLNVDQKVIQA 1208
Score = 50 (22.7 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 47 KQLLMDCGIGASPGMSGSGPHYDPG-APPPSILTQH 81
K ++ D G+ G S PH PG PP S + QH
Sbjct: 83 KGIVEDVHCGSMKGTSMRPPH--PGMGPPQSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 1015 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1066
Score = 38 (18.4 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 250 (93.1 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 59/160 (36%), Positives = 85/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ MLDI+ + C + G + RLDGS+ + R + +FN+DP + +
Sbjct: 616 HKVLMFSQMTMMLDILMD---YCYLRGFKFSRLDGSMSYSDREENMHQFNNDPEVFLFLV 672
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 673 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 732
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K +I+ +N+ +G CLD Q+
Sbjct: 733 VERAAAKRKLEKLIIH-KNQ-FKGGKSGLAQSKSCLDPQE 770
Score = 46 (21.3 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 5 LQSVCNHPKLV---LGPSHAQY---EALVSRPGLNLSDIRHAAKLPALKQ 48
L+ CNHP L+ L P+ Q+ E LV G L R LP LK+
Sbjct: 567 LRKCCNHPYLIEYPLDPATQQFKVDEDLVKNSGKFLLLDR---MLPELKK 613
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 253 (94.1 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1070 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1126
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1127 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1186
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1187 EKILAAAKYKLNVDQKVIQA 1206
Score = 50 (22.7 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 47 KQLLMDCGIGASPGMSGSGPHYDPG-APPPSILTQH 81
K ++ D G+ G S PH PG PP S + QH
Sbjct: 83 KGIVEDVHCGSMKGTSMRPPH--PGMGPPQSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 1013 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1064
Score = 38 (18.4 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 253 (94.1 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1072 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1128
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1129 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1188
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1189 EKILAAAKYKLNVDQKVIQA 1208
Score = 50 (22.7 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 47 KQLLMDCGIGASPGMSGSGPHYDPG-APPPSILTQH 81
K ++ D G+ G S PH PG PP S + QH
Sbjct: 83 KGIVEDVHCGSMKGTSMRPPH--PGMGPPQSPMDQH 116
Score = 40 (19.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 1015 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1066
Score = 38 (18.4 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 258 (95.9 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 62/172 (36%), Positives = 88/172 (51%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q R MLDI+E +F +YL++DG+ +R ++T++N D +I V
Sbjct: 846 RVLLFSQSRQMLDILE--VF-LRAQKYSYLKMDGTTTIASRQPLITRYNEDASIFVFLLT 902
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ VI D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 903 TRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 962
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L D+ Q +S G
Sbjct: 963 HRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLTSPDTSQSTETSAIFAG 1013
Score = 44 (20.5 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 791 LRKICNHPDLFSG 803
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 257 (95.5 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 55/138 (39%), Positives = 78/138 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+E DL CE G Y R+DGS++ R + ++N+ +
Sbjct: 943 HRVLIFSQMTRMLDIME-DL--CEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFL 999
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHR+GQK V +YR +TK ++EEK
Sbjct: 1000 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEK 1059
Query: 200 IMNLQKFKLLTANTVINS 217
I ++ K K+L + V+ +
Sbjct: 1060 ITSVAKKKMLLNHLVVRA 1077
Score = 47 (21.6 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L L+ CNHP L + A+ EA + G+ + I+++ K L+++L
Sbjct: 888 LMELKKCCNHPYLFV---KAELEAPKEKNGMYEGTALIKNSGKFVLLQKML 935
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 257 (95.5 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 55/138 (39%), Positives = 78/138 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+E DL CE G Y R+DGS++ R + ++N+ +
Sbjct: 943 HRVLIFSQMTRMLDIME-DL--CEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFL 999
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHR+GQK V +YR +TK ++EEK
Sbjct: 1000 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEK 1059
Query: 200 IMNLQKFKLLTANTVINS 217
I ++ K K+L + V+ +
Sbjct: 1060 ITSVAKKKMLLNHLVVRA 1077
Score = 47 (21.6 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L L+ CNHP L + A+ EA + G+ + I+++ K L+++L
Sbjct: 888 LMELKKCCNHPYLFV---KAELEAPKEKNGMYEGTALIKNSGKFVLLQKML 935
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 256 (95.2 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 62/173 (35%), Positives = 88/173 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q R ML+I+E +F E G +YL++DG+ +R ++ +FN + I V
Sbjct: 834 HRVLLFTQSRQMLEILE--VFVKEN-GFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFIL 890
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
A+ V+ D DW+P D QA +RA RIGQK+ V VYRL+T T+EEKI
Sbjct: 891 TTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKI 950
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + I +LF L D Q +S G
Sbjct: 951 YHRQIFKQFLTNRVLKDPKQRR-FFKSNDIYELFTLSSPDGSQGTETSAIFAG 1002
Score = 45 (20.9 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 779 LRKICNHPDLFTG 791
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1115 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQTRNDIFVFLL 1171
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1172 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1231
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1232 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1270
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 809 RKVCNHPEL 817
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1118 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQNRNDIFVFLL 1174
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1175 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1234
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1235 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1273
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 813 RKVCNHPEL 821
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1121 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQTRNDIFVFLL 1177
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1178 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1237
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1238 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1276
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 815 RKVCNHPEL 823
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1122 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQNRNDIFVFLL 1178
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1179 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1238
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1239 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1277
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 816 RKVCNHPEL 824
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1126 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQNRNDIFVFLL 1182
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1183 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1242
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1243 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1281
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 818 RKVCNHPEL 826
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1128 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQTRNDIFVFLL 1184
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1185 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1244
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1245 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1283
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 822 RKVCNHPEL 830
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 262 (97.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E + + TY+RLDGS + R +V F + I V
Sbjct: 1128 HRVLIYSQMTRMIDLLEEYMVYRKH---TYMRLDGSSKISERRDMVADFQNRNDIFVFLL 1184
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ K V VYRLI K T+EE+I
Sbjct: 1185 STRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERI 1244
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
+ K K VI+ N DT+ +++ L LD ++
Sbjct: 1245 LQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEE 1283
Score = 40 (19.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 QSVCNHPKL 14
+ VCNHP+L
Sbjct: 822 RKVCNHPEL 830
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 253 (94.1 bits), Expect = 5.3e-22, Sum P(3) = 5.3e-22
Identities = 59/154 (38%), Positives = 78/154 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLD++E L G YLRLDGS R A++ +FN+D I
Sbjct: 2060 HRVLIFTQMTRMLDVLEQFL---TYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFIL 2116
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTV+F D DW+P D QA DR HRIGQ + V++YRLI++ T+EE I
Sbjct: 2117 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2176
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + I N I +LF
Sbjct: 2177 LKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 2210
Score = 45 (20.9 bits), Expect = 5.3e-22, Sum P(3) = 5.3e-22
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP L
Sbjct: 894 LMQLRKVCNHPNL 906
Score = 43 (20.2 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 22/69 (31%), Positives = 29/69 (42%)
Query: 8 VCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLP-ALKQLLMDCGIGASPGMSGSGP 66
V N+P+ LGP + PG LS +P L LM + ASP +GP
Sbjct: 1011 VVNNPRAPLGPVPVR-----PPPGPELSAQPTPGPVPQVLPASLM---VSASP----AGP 1058
Query: 67 HYDPGAPPP 75
P + PP
Sbjct: 1059 PLIPASRPP 1067
Score = 40 (19.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 45 ALKQLLMDCGIGASPGMSGSGPHYDPGAPPPS 76
+L Q L G+SP + S P PPP+
Sbjct: 250 SLNQPLTSSKAGSSPCLGSSSAASSP--PPPA 279
Score = 36 (17.7 bits), Expect = 5.3e-22, Sum P(3) = 5.3e-22
Identities = 16/58 (27%), Positives = 21/58 (36%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPP 75
P + + VS P + I LPA + I A +S SGP PP
Sbjct: 1422 PLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPP 1479
Score = 36 (17.7 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 56 GASPGMSGSGPHYDPGAPPPSILTQ 80
G G P PPPS +TQ
Sbjct: 364 GPEEGAEEEPPQVLEIKPPPSAVTQ 388
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 244 (91.0 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 59/143 (41%), Positives = 76/143 (53%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVXXX 140
R LIF Q+ +LDI+E+ C G Y RLDG R + FN + + +
Sbjct: 507 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFML 563
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT NT+EE+I
Sbjct: 564 STRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 623
Query: 201 MNLQKFKLLTANTVINSENRNLD 223
+ + KL + VI + R +D
Sbjct: 624 VERAEIKLRLDSIVIQ-QGRLID 645
Score = 47 (21.6 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 456 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 489
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 253 (94.1 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1049 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1105
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1106 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1165
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1166 EKILAAAKYKLNVDQKVIQA 1185
Score = 46 (21.3 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 47 KQLLMDCGIGASPGMSGSGPHYDPG-APPPSILTQH 81
K ++ D G+ G PH PG PP S + QH
Sbjct: 83 KGIVEDIHCGSMKGTGMRPPH--PGMGPPQSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 992 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1043
Score = 38 (18.4 bits), Expect = 4.6e-21, Sum P(2) = 4.6e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 253 (94.1 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1049 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1105
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1106 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1165
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1166 EKILAAAKYKLNVDQKVIQA 1185
Score = 46 (21.3 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 47 KQLLMDCGIGASPGMSGSGPHYDPG-APPPSILTQH 81
K ++ D G+ G PH PG PP S + QH
Sbjct: 83 KGIVEDIHCGSMKGTGMRPPH--PGMGPPQSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 992 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1043
Score = 38 (18.4 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 253 (94.1 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1065 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1182 EKILAAAKYKLNVDQKVIQA 1201
Score = 46 (21.3 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 47 KQLLMDCGIGASPGMSGSGPHYDPG-APPPSILTQH 81
K ++ D G+ G PH PG PP S + QH
Sbjct: 83 KGIVEDIHCGSMKGTGMRPPH--PGMGPPQSPMDQH 116
Score = 40 (19.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 1008 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1059
Score = 38 (18.4 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 251 (93.4 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 65/172 (37%), Positives = 90/172 (52%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDV 137
T HR L+F Q+ +++I+E+ L + G+ YLRLDGS S R ++ FN+ D
Sbjct: 871 TGHRVLMFFQMTQIMNIMEDFL---RLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFC 927
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P +DLQA DRAHRIGQK V + RLIT N++E
Sbjct: 928 FLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSVE 987
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC---LDGQDSRQEAG 246
EKI+ +FKL VI + D +T + D L+ + +AG
Sbjct: 988 EKILERAQFKLDMDGKVIQAGK--FDNKSTNEERDALLRTLLETAEGTDQAG 1037
Score = 46 (21.3 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDI--RHAAKLPALKQLL 50
L L+ +CNHP + Q E V+ PG +D+ R A K L ++L
Sbjct: 821 LMQLRKLCNHPFVF-----EQVEDQVN-PGRGTNDLIWRTAGKFELLDRIL 865
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 245 (91.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 894 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 949
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 950 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1009
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1010 EEKILAAAKYKLNVDQKVIQA 1030
Score = 49 (22.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 56 GASPGMSGSGPHYDPGAPPPSILTQH 81
G PG G GP PG PP+ H
Sbjct: 28 GPGPG-PGPGPGPGPGPAPPNYSRPH 52
Score = 40 (19.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 66 GVPPGMPGQ-P---PGGPP 80
Score = 39 (18.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 837 TIMQLRKICNHP 848
Score = 37 (18.1 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 59 PGMSGSGPHYDPGAPP 74
P +S +GP PG P
Sbjct: 22 PSVSATGPGPGPGPGP 37
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 253 (94.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 59/154 (38%), Positives = 78/154 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLD++E L G YLRLDGS R A++ +FN+D I
Sbjct: 2060 HRVLIFTQMTRMLDVLEQFL---TYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFIL 2116
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTV+F D DW+P D QA DR HRIGQ + V++YRLI++ T+EE I
Sbjct: 2117 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2176
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + I N I +LF
Sbjct: 2177 LKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 2210
Score = 50 (22.7 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 24/84 (28%), Positives = 34/84 (40%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD---IRHAAKLPALKQLLMDCGIGAS 58
L L+ VCNHP L P + PG+ S + A + L+Q + D G
Sbjct: 901 LMQLRKVCNHPNL-FDPRPVTSPFIT--PGICFSTASLVLRATDVHPLQQRI-DMGRFDL 956
Query: 59 PGMSGSGPHYDPGAPPPSILTQHR 82
G+ G Y+ + L QHR
Sbjct: 957 IGLEGRVSRYEAD----TFLPQHR 976
Score = 39 (18.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 45 ALKQLLMDCGIGASPGMSGSGPHYDPGAPPP 75
+L Q L G+SP + S P PPP
Sbjct: 250 SLNQPLASSKAGSSPCLGSSSAASSP--PPP 278
Score = 36 (17.7 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGP 66
P + + VS P + I + LPA + + I A +S SGP
Sbjct: 1430 PLASPVSSAVSVPVSSSLPISISTTLPAPASVPLTIPISAPLPVSASGP 1478
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 255 (94.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 63/152 (41%), Positives = 85/152 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T HR L+F Q+ +M+ IVE+ L + YLRLDGS R A++ KFN+ P +
Sbjct: 698 TGHRVLMFFQMTSMMTIVEDFLAGGT---IQYLRLDGSTKPDERGALLDKFNA-PNSEYF 753
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +D+QA DRAHRIGQK V V+RLIT N++
Sbjct: 754 LFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSV 813
Query: 197 EEKIMNLQKFKLLTANTVINSENRNLDTMATG 228
EEKI+ ++KL VI + D +TG
Sbjct: 814 EEKILAAARYKLNVDEKVIQAGK--FDNRSTG 843
Score = 39 (18.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 4 YLQSVCNHPKL 14
+L+ +CNHP L
Sbjct: 646 HLRKLCNHPFL 656
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 251 (93.4 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 62/172 (36%), Positives = 87/172 (50%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q R ML I+E +F +YL++DG+ +R ++TK+N D +I V
Sbjct: 851 RVLLFSQSRQMLHILE--VF-LRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLT 907
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ VI D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 908 TRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 967
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L D+ Q +S G
Sbjct: 968 HRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLTSPDASQGTETSAIFAG 1018
Score = 44 (20.5 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 796 LRKICNHPDLFSG 808
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 251 (93.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 61/172 (35%), Positives = 87/172 (50%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q R MLDI+E +F +YL++DG+ +R ++T++N D +I V
Sbjct: 852 RVLLFSQSRQMLDILE--VF-LRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLT 908
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ VI D DW+P D QA +RA RIGQKK V VYRL+T T+EEKI
Sbjct: 909 TRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 968
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPG 253
+ Q FK N V+ + + + +LF L + Q +S G
Sbjct: 969 HRQIFKQFLTNRVLKDPKQRR-FFKSNDLYELFTLTSPGASQSTETSAIFAG 1019
Score = 44 (20.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ +CNHP L G
Sbjct: 798 LRKICNHPDLFSG 810
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 251 (93.4 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 60/164 (36%), Positives = 84/164 (51%)
Query: 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV 137
L +HR LIF Q+ MLD+++ L G Y RLDG+ R A++ +FN+DP +
Sbjct: 1202 LYKHRCLIFTQMSKMLDVLQTFL---SHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFC 1258
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVIF D DW+P D QA DR HRIGQ + V++YRLI++ T+E
Sbjct: 1259 FILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIE 1318
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMA-TGKILDLFCLDGQD 240
E I+ K I+ + + I DLF DG++
Sbjct: 1319 ENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLF--DGEN 1360
Score = 38 (18.4 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 837 LRKCCNHPNL 846
Score = 36 (17.7 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 37 IRHAAKLPALKQLLMDCG 54
I A + P L+ + DCG
Sbjct: 1171 ISRALQFPELRLIEYDCG 1188
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 248 (92.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 53/139 (38%), Positives = 73/139 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ MLDI+ + C + RLDGS+ T R + FN+DP + +
Sbjct: 616 HKVLLFSQMTRMLDILMD---YCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLV 672
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 673 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 732
Query: 201 MNLQKFKLLTANTVINSEN 219
+ K +I+ +
Sbjct: 733 VERAAAKRKLEKLIIHKNH 751
Score = 40 (19.1 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP L+ P
Sbjct: 567 LRKCCNHPYLIEYP 580
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 244 (91.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 59/143 (41%), Positives = 76/143 (53%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVXXX 140
R LIF Q+ +LDI+E+ C G Y RLDG R + FN + + +
Sbjct: 507 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFML 563
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT NT+EE+I
Sbjct: 564 STRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 623
Query: 201 MNLQKFKLLTANTVINSENRNLD 223
+ + KL + VI + R +D
Sbjct: 624 VERAEIKLRLDSIVIQ-QGRLID 645
Score = 47 (21.6 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 456 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 489
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 262 (97.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 68/177 (38%), Positives = 89/177 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q M++I+E+ + YLRLDGS R +V F SDP+I
Sbjct: 1784 HRVLIYSQFTKMINILEDFMI---FRKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFLL 1840
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QA DRAHR+GQ + V VYRLITKNT+EEKI
Sbjct: 1841 STRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKI 1900
Query: 201 MNLQKFK-----LLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNP 252
+ K K ++ A S LD + + + F LD D +E + +P
Sbjct: 1901 LKRAKQKHQIQSIVIAGGKFESNPEELDQVGENEAIS-FLLD-DDELEERFKNQIDP 1955
Score = 36 (17.7 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 6 QSVCNHPK 13
+ VCNHP+
Sbjct: 1454 RKVCNHPE 1461
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 245 (91.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1087 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1142
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1143 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1202
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1203 EEKILAAAKYKLNVDQKVIQA 1223
Score = 50 (22.7 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 59 PGMSGSGPHYDPGAPPPSILTQH 81
P +S +GP PG PP+ H
Sbjct: 223 PSVSATGPGPSPGPAPPNYSRPH 245
Score = 48 (22.0 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPIPTQGPGGYPQDNMHQMHKPM--ESMHEKGMSDDPRYTQMKGMGMRSGGHAG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 259 GVPPGMPGQ-P---PGGPP 273
Score = 40 (19.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 56 GASPGMSGSGPHYDPGAPPPSI 77
G P M G P P PPPS+
Sbjct: 206 GKRP-MPGMQPQM-PALPPPSV 225
Score = 40 (19.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSIMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1030 TIMQLRKICNHP 1041
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 247 (92.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 53/146 (36%), Positives = 77/146 (52%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P + T+ H+ L+F Q+ MLDI+ + C + RLDGS+ + R + FN+DP
Sbjct: 587 PELKTRGHKVLLFSQMTRMLDILMD---YCHFRNFNFSRLDGSMSYSEREKNIHSFNTDP 643
Query: 134 TIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
+ + ADTVI D DW+P DLQA DR HRIGQ + V VYRL+T
Sbjct: 644 DVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTA 703
Query: 194 NTLEEKIMNLQKFKLLTANTVINSEN 219
NT+++KI+ K +I+ +
Sbjct: 704 NTIDQKIVERAAAKRKLEKLIIHKNH 729
Score = 40 (19.1 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP L+ P
Sbjct: 545 LRKCCNHPYLIEYP 558
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 245 (91.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 47 (21.6 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPMPTQGPGGYPQDNMHQMHKPM--ESMHEKGMPDDPRYNQMKGMGMRSGAHTG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 245 (91.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 45 (20.9 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPMPTQGPGGYPQDNMHQMHKPM--ESMHEKGMPDDPRYNQMKGMGMRSGAHTG 105
Query: 70 PGAPPPSILTQH 81
APPPS + QH
Sbjct: 106 M-APPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 245 (91.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 49 (22.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPIPTQGPGGYPQDNMHQMHKPM--ESMHEKGMSDDPRYNQMKGMGMRSGAHAG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 245 (91.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 47 (21.6 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPMPTQGPGGYPQDNMHQMHKPM--ESMHEKGMPDDPRYNQMKGMGMRSGAHTG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 245 (91.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 47 (21.6 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPMPTQGPGGYPQDNMHQMHKPM--ESMHEKGMPDDPRYNQMKGMGMRSGAHTG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 251 (93.4 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 58/153 (37%), Positives = 75/153 (49%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HRALIF Q+ +LDI+E L + G Y+RLDG+ R + KFN DP I V
Sbjct: 1383 HRALIFTQMTKVLDILEQFL---NIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFIL 1439
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D Q DR HRIGQ + V++YR +++ T+E I
Sbjct: 1440 STRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNI 1499
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
+ K N VI D + DL
Sbjct: 1500 IKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDL 1532
Score = 44 (20.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP L
Sbjct: 1126 LMQLRKVCNHPDL 1138
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 245 (91.3 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 48 (22.0 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPIPTQGPGGYPQDNMHQMHKPM--ESMHEKGMSDDPRYNQMKGMGMRSGGHAG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 243 (90.6 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 810 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 866
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 867 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 926
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 927 IIERAKKKMVLDHLVI----QRMDT--TGR 950
Score = 47 (21.6 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 760 LKKCCNHCYLIKPPEENERE---NGQEILLSLIRSSGKLILLDKLL 802
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 249 (92.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 60/172 (34%), Positives = 84/172 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HRALIF Q+ +LD++E L G Y+RLDG+ R + +FN+D I V
Sbjct: 1263 HRALIFTQMTKVLDVLEQFL---NYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFIL 1319
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D Q DR HRIGQ + V++YR ++++T+E I
Sbjct: 1320 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1379
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNP 252
+ K N VI + D + + DL G + + A S G P
Sbjct: 1380 LKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLL---GSELPENA-SGGDKP 1427
Score = 45 (20.9 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP L
Sbjct: 986 LMQLRKVCNHPNL 998
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 247 (92.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 52/139 (37%), Positives = 75/139 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ +MLDI+ + C + + RLDGS+ + R + FN+DP + +
Sbjct: 616 HKVLLFSQMTSMLDILMD---YCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLV 672
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 673 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 732
Query: 201 MNLQKFKLLTANTVINSEN 219
+ K +I+ +
Sbjct: 733 VERAAAKRKLEKLIIHKNH 751
Score = 40 (19.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP L+ P
Sbjct: 567 LRKCCNHPYLIEYP 580
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 245 (91.3 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 1095 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 1150
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQA 1231
Score = 50 (22.7 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI 77
P H Q RP + ++P L + G PG G GP PG PP+
Sbjct: 197 PDHLQMAVQGKRPMPGMQQ-----QMPTLPPPSVSA-TGPGPG-PGPGPGPGPGPAPPNY 249
Query: 78 LTQH 81
H
Sbjct: 250 SRPH 253
Score = 48 (22.0 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPIPTQGPGGYPQDNMHQMHKPM--ESMHEKGMSDDPRYNQMKGMGMRSGGHAG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 267 GVPPGMPGQ-P---PGGPP 281
Score = 40 (19.1 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSMMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1038 TIMQLRKICNHP 1049
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 254 (94.5 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 59/140 (42%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1039 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1095
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1096 FLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1155
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1156 EKILAAAKYKLNVDQKVIQA 1175
Score = 40 (19.1 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSILTQHRAL 84
G G SPG S GP PG PPS+ Q A+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSVPHQMPAM 60
Score = 40 (19.1 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 982 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1033
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 253 (94.1 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 59/154 (38%), Positives = 78/154 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLD++E L G YLRLDGS R A++ +FN+D I
Sbjct: 2048 HRVLIFTQMTRMLDVLEQFL---TYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFIL 2104
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTV+F D DW+P D QA DR HRIGQ + V++YRLI++ T+EE I
Sbjct: 2105 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2164
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + I N I +LF
Sbjct: 2165 LKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 2198
Score = 48 (22.0 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD---IRHAAKLPALKQLLMDCGIGAS 58
L L+ VCNHP L P + PG+ S + A ++ L+Q+ D G
Sbjct: 904 LMQLRKVCNHPNL-FDPRPVTSPFIT--PGICFSTASLVLRATEVHPLQQI--DMGRFDL 958
Query: 59 PGMSGSGPHYDPGAPPPSILTQHR 82
G+ G Y+ + L +HR
Sbjct: 959 IGLEGRVSRYEAD----TFLPRHR 978
Score = 39 (18.8 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 45 ALKQLLMDCGIGASPGMSGSGPHYDPGAPPP 75
+L Q L G+SP + S P PPP
Sbjct: 250 SLNQPLASSKAGSSPCLGSSSAASSP--PPP 278
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 253 (94.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 61/155 (39%), Positives = 85/155 (54%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV- 137
T+HR LIF Q+ MLDI+ L + G + RLDGS + R + FN+ + D
Sbjct: 954 TKHRVLIFSQMVRMLDILAEYL---SLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFC 1010
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P DLQAM RAHRIGQ++VVN+YR +T ++E
Sbjct: 1011 FLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 1070
Query: 198 EKIMNLQKFKLLTANTVI---NSENRNLDTMATGK 229
E+I+ K K++ + VI N+E R L+ T K
Sbjct: 1071 EEILERAKRKMVLDHLVIQKLNAEGR-LEKRETKK 1104
Score = 42 (19.8 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQ 48
+L + V N+ K V +Y +SR + ++D+ L +KQ
Sbjct: 486 NLSGFKKVLNYTKKVT--EEIRYRTALSREEIEVNDVSKEMDLDIIKQ 531
Score = 40 (19.1 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L H + L+ I + KL L +LL+
Sbjct: 904 LKKCCNHPFLFESADHGYGGDINDNSKLD-KIILSSGKLVILDKLLV 949
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 261 (96.9 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 69/177 (38%), Positives = 91/177 (51%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ LIF Q+ ++LDI+ + C + G Y RLDGS+ R + KF+SDP + +
Sbjct: 632 HKVLIFSQMTSILDILMD---YCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLL 688
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V V+RLIT NT++EKI
Sbjct: 689 STRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANTIDEKI 748
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKG 257
+ K VI+ +N+ + A K CLD D E S G +KG
Sbjct: 749 LERASAKRKLEKMVIH-KNKFKGSKAELK-QSKSCLD-VDELVELLKSRDYDGAVKG 802
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 244 (91.0 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 57/139 (41%), Positives = 77/139 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVX 138
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++T FN +
Sbjct: 1087 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLT-FNEPGSEYFI 1142
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++EE
Sbjct: 1143 LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE 1202
Query: 199 KIMNLQKFKLLTANTVINS 217
KI+ K+KL VI +
Sbjct: 1203 KILAAAKYKLNVDQKVIQA 1221
Score = 50 (22.7 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 59 PGMSGSGPHYDPGAPPPSILTQH 81
P +S +GP PG PP+ H
Sbjct: 223 PSVSATGPGPSPGPAPPNYSRPH 245
Score = 48 (22.0 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 17 GPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPG---MSG----SGPHYD 69
GP A + PG D H P + + + G+ P M G SG H
Sbjct: 48 GPPSAGHPIPTQGPGGYPQDNMHQMHKPM--ESMHEKGMSDDPRYTQMKGMGMRSGGHAG 105
Query: 70 PGAPPPSILTQH 81
G PPPS + QH
Sbjct: 106 MG-PPPSPMDQH 116
Score = 40 (19.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PGM G P PG PP
Sbjct: 259 GVPPGMPGQ-P---PGGPP 273
Score = 40 (19.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 56 GASPGMSGSGPHYDPGAPPPSI 77
G P M G P P PPPS+
Sbjct: 206 GKRP-MPGMQPQM-PALPPPSV 225
Score = 40 (19.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHSIMGPSPGPPS 51
Score = 39 (18.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 1030 TIMQLRKICNHP 1041
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 250 (93.1 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 61/151 (40%), Positives = 81/151 (53%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P + Q R LIF Q+ +LDI+E+ C G Y RLDG+ AR + FN+
Sbjct: 455 PKVQEQGSRVLIFSQMTRVLDILED---YCMWRGFEYCRLDGNTPHEAREQAIDAFNAPN 511
Query: 134 TID-VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
+ + AD VI D DW+P DLQAMDRAHRIGQ+K V V+RLIT
Sbjct: 512 SSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLIT 571
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
NT+EE+I+ + KL + VI + R +D
Sbjct: 572 DNTVEERIVERAEMKLRLDSIVIQ-QGRLID 601
Score = 39 (18.8 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 412 LMQLRKCCNHPYLFDG 427
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 248 (92.4 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 52/139 (37%), Positives = 75/139 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ +MLDI+ + C + + RLDGS+ + R + FN+DP + +
Sbjct: 599 HKVLVFSQMTSMLDILMD---YCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLV 655
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 656 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 715
Query: 201 MNLQKFKLLTANTVINSEN 219
+ K +I+ +
Sbjct: 716 VERAAAKRKLEKLIIHKNH 734
Score = 38 (18.4 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP ++ P
Sbjct: 550 LRKCCNHPYMIEYP 563
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 253 (94.1 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1047 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1103
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1104 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1163
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1164 EKILAAAKYKLNVDQKVIQA 1183
Score = 40 (19.1 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 990 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1041
Score = 38 (18.4 bits), Expect = 4.6e-21, Sum P(2) = 4.6e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
Score = 36 (17.7 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 56 GASPGMSGSGPHYDPGAPPPS 76
G P +SG P P PS
Sbjct: 246 GPGPELSGPSPPQKLPVPAPS 266
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 257 (95.5 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 59/171 (34%), Positives = 83/171 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLD++E L G YLRLDGS R ++ +FN D I
Sbjct: 1675 HRVLIFTQMTKMLDVLEAFL---NYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFIL 1731
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QA DR HRIGQ + V++YRL+++ T+E I
Sbjct: 1732 STRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNI 1791
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTN 251
+ K + ++ I N + I DLF ++ + + + N
Sbjct: 1792 LKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSEQDESSQEKSEN 1842
Score = 43 (20.2 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP +
Sbjct: 1190 LMQLRKVCNHPNM 1202
Score = 38 (18.4 bits), Expect = 9.4e-21, Sum P(2) = 9.4e-21
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 24 EALVSRPGLNLSDIRHAAKLPA-LKQLLMDCGIGASPGMSGSG 65
EA + P + + + + KLPA + QL G P + +G
Sbjct: 361 EAEIKIPAVGATPVAISTKLPAAVVQLTQQGGTPLLPCNTSAG 403
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 253 (94.1 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1049 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1105
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1106 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1165
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1166 EKILAAAKYKLNVDQKVIQA 1185
Score = 40 (19.1 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 992 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1043
Score = 38 (18.4 bits), Expect = 4.6e-21, Sum P(2) = 4.6e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 253 (94.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 58/140 (41%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R A++ KFN + +
Sbjct: 1072 TNHRVLLFCQMTSLMTIME-DYFAFR--NFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1128
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1129 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1188
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1189 EKILAAAKYKLNVDQKVIQA 1208
Score = 40 (19.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPG-LNLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G +N +++ R + K L ++L
Sbjct: 1015 TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRIL 1066
Score = 38 (18.4 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 32 GPGPSPGSVHSMMGP--SPG--PPSV 53
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 252 (93.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 53/138 (38%), Positives = 78/138 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+E+ F C++ G Y R+DGS+ R + ++N+ V
Sbjct: 957 HRVLIFSQMTMMLDILED--F-CDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFL 1013
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHR+GQK V +YR +TK ++EE+
Sbjct: 1014 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEER 1073
Query: 200 IMNLQKFKLLTANTVINS 217
I ++ K K+L + V+ +
Sbjct: 1074 ITSVAKKKMLLTHLVVRA 1091
Score = 42 (19.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD--IRHAAKLPALKQLL 50
L+ CNHP L + A EA + G+ I++A K L+++L
Sbjct: 905 LKKCCNHPYLFM---KACLEAPKLKNGMYEGSALIKNAGKFVLLQKML 949
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 252 (93.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 53/138 (38%), Positives = 78/138 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+E+ F C++ G Y R+DGS+ R + ++N+ V
Sbjct: 957 HRVLIFSQMTMMLDILED--F-CDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFL 1013
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHR+GQK V +YR +TK ++EE+
Sbjct: 1014 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEER 1073
Query: 200 IMNLQKFKLLTANTVINS 217
I ++ K K+L + V+ +
Sbjct: 1074 ITSVAKKKMLLTHLVVRA 1091
Score = 42 (19.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD--IRHAAKLPALKQLL 50
L+ CNHP L + A EA + G+ I++A K L+++L
Sbjct: 905 LKKCCNHPYLFM---KACLEAPKLKNGMYEGSALIKNAGKFVLLQKML 949
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 245 (91.3 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 59/143 (41%), Positives = 76/143 (53%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXXX 140
R LIF Q+ +LDI+E+ C G Y RLDG R + FN+ + +
Sbjct: 508 RVLIFSQMTRLLDILED---YCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFML 564
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT NT+EE+I
Sbjct: 565 STRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 624
Query: 201 MNLQKFKLLTANTVINSENRNLD 223
+ + KL + VI + R +D
Sbjct: 625 VERAEIKLRLDSIVIQ-QGRLID 646
Score = 43 (20.2 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +V G
Sbjct: 457 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVGNSG 490
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 253 (94.1 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 59/154 (38%), Positives = 78/154 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLD++E L G YLRLDGS R A++ +FN+D I
Sbjct: 2071 HRVLIFTQMTRMLDVLEQFL---TYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFIL 2127
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTV+F D DW+P D QA DR HRIGQ + V++YRLI++ T+EE I
Sbjct: 2128 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2187
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + I N I +LF
Sbjct: 2188 LKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 2221
Score = 46 (21.3 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 22/87 (25%), Positives = 33/87 (37%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD---IRHAAKLPALKQLLMDCGIGAS 58
L L+ VCNHP L P + PG+ S + A + L+++ D G
Sbjct: 902 LMQLRKVCNHPNL-FDPRPVTSPFIT--PGICFSTASLVLRATDVHPLQRI--DMGRFDL 956
Query: 59 PGMSGSGPHYDPGAPPPSILTQHRALI 85
G+ G Y+ P R L+
Sbjct: 957 IGLEGRVSRYEADTFLPQYRLSRRVLL 983
Score = 42 (19.8 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 23/69 (33%), Positives = 27/69 (39%)
Query: 8 VCNHPKLVLGPSHAQYEALVSRPGLNLS-DIRHAAKLPALKQLLMDCGIGASPGMSGSGP 66
V N P+ LGP + PG LS P L LM + ASP SGP
Sbjct: 1019 VVNSPRTPLGPVPVR-----PPPGPELSAQPTPGPTPPVLPAPLM---VSASP----SGP 1066
Query: 67 HYDPGAPPP 75
P + PP
Sbjct: 1067 PLIPASRPP 1075
Score = 39 (18.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 45 ALKQLLMDCGIGASPGMSGSGPHYDPGAPPP 75
+L Q L G+SP + S P PPP
Sbjct: 250 SLNQPLASSKAGSSPCLGSSSAASSP--PPP 278
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 239 (89.2 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 55/163 (33%), Positives = 92/163 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVT---YLRLDGSVVSTARHAIVTKFNSDPTIDV 137
++AL+F Q R MLDI+E + + P ++ YLR+DG+ R ++V +FN++ + DV
Sbjct: 668 YKALLFTQSRQMLDILE-EFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNE-SFDV 725
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
A+ +I D DW+P D+QA +RA RIGQK+ V++YRL+ ++E
Sbjct: 726 FLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIE 785
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD 240
EKI + Q FK N ++ ++ + ++ DLF L G++
Sbjct: 786 EKIYHRQIFKQFLTNRIL-TDPKQKRFFKIHELHDLFSLGGEN 827
Score = 49 (22.3 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ +CNHP L+ + R + D + + K+ +KQLL+
Sbjct: 623 LRKICNHPDLL--------DRDTKRHNPDYGDPKRSGKMQVVKQLLL 661
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 238 (88.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 51/136 (37%), Positives = 73/136 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+E D + E Y R+DG + T R + +FN+ V
Sbjct: 1069 HRVLIFSQMTKMLDILE-DFLEGEQ--YKYERIDGGITGTLRQEAIDRFNAPGAQQFVFL 1125
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+N++EE+
Sbjct: 1126 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEER 1185
Query: 200 IMNLQKFKLLTANTVI 215
+ + K K++ + V+
Sbjct: 1186 VTQVAKRKMMLTHLVV 1201
Score = 56 (24.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL-NLSDIRHAA-KLPALKQLL 50
L+ CNHP L PS A+ EA + GL ++ + AA KL L ++L
Sbjct: 1017 LKKCCNHPYLF--PSAAE-EATTAAGGLYEINSLTKAAGKLVLLSKML 1061
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 244 (91.0 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 52/139 (37%), Positives = 73/139 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
H+ L+F Q+ MLDI+ + C + RLDGS+ + R + FN+DP + +
Sbjct: 617 HKVLLFSQMTRMLDILMD---YCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLV 673
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D DW+P DLQA DR HRIGQ K V VYRL+T NT+++KI
Sbjct: 674 STRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKI 733
Query: 201 MNLQKFKLLTANTVINSEN 219
+ K +I+ +
Sbjct: 734 VERAAAKRKLEKLIIHKNH 752
Score = 40 (19.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 5 LQSVCNHPKLVLGP 18
L+ CNHP L+ P
Sbjct: 568 LRKCCNHPYLIEYP 581
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 248 (92.4 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 64/170 (37%), Positives = 88/170 (51%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q + MLDI+E+ L E +Y R+DG R A++ +FN+ + V
Sbjct: 744 HRVLLFSQTQQMLDILESFLVANEY---SYRRMDGLTPVKQRMALIDEFNNSEDMFVFVL 800
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
A+ VI D DW+P D+QA +RA RIGQKK V VYRLIT+ T+EEK+
Sbjct: 801 TTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKV 860
Query: 201 MNLQKFKLLTANTVI-NSENRNLDTMATGKILDLFCL-DGQDSRQEAGSS 248
+ Q +K N ++ N + R K DLF L D DS +S
Sbjct: 861 YHRQIYKHFLTNKILKNPQQRRFFKARDMK--DLFILKDDGDSNASTETS 908
Score = 40 (19.1 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 5 LQSVCNHPKLV 15
++ +CNHP L+
Sbjct: 699 MRKICNHPDLL 709
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 245 (91.3 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 347 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 402
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 403 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 462
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 463 EEKILAAAKYKLNVDQKVIQA 483
Score = 39 (18.8 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 290 TIMQLRKICNHP 301
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 257 (95.5 bits), Expect = 5.3e-21, P = 5.3e-21
Identities = 61/137 (44%), Positives = 78/137 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q +MLDI+E L ++ GVTY RLDGS T R IV FN+D +I
Sbjct: 605 HRVLIFSQWTSMLDILEWTL---DVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLL 661
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVI D D++P D QA DR HRIGQ K V ++RL+TK+T++E I
Sbjct: 662 STRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENI 721
Query: 201 MNLQKFKLLTANTVINS 217
+ K KL+ V+ S
Sbjct: 722 YEIAKRKLVLDAAVLES 738
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 243 (90.6 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 808 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 865 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 924
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 925 IIERAKKKMVLDHLVI----QRMDT--TGR 948
Score = 46 (21.3 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 758 LKKCCNHCYLIKPPEENERE---NGQEVLLSLIRSSGKLILLDKLL 800
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 244 (91.0 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 58/143 (40%), Positives = 76/143 (53%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXXX 140
R L+F Q+ +LDI+E+ C G Y RLDG R + FN+ + +
Sbjct: 428 RVLLFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFML 484
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT NT+EE+I
Sbjct: 485 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 544
Query: 201 MNLQKFKLLTANTVINSENRNLD 223
+ + KL + VI + R +D
Sbjct: 545 VERAEIKLRLDSIVIQ-QGRLID 566
Score = 41 (19.5 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPGLNLSDIRHAAKL 43
L L+ CNHP L GP + L++ G L + AKL
Sbjct: 377 LMQLRKCCNHPYLFDGAEPGPPYTTDTHLITNSGKMLVLDKLLAKL 422
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 250 (93.1 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 57/140 (40%), Positives = 78/140 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ +++ I+E D F YLRLDG+ S R ++ KFN + + +
Sbjct: 1067 TNHRVLLFCQMTSLMTILE-DYFGYR--NFLYLRLDGTTKSEDRAMLLKKFNEEGSQYFI 1123
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL T N++E
Sbjct: 1124 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1183
Query: 198 EKIMNLQKFKLLTANTVINS 217
EKI+ K+KL VI +
Sbjct: 1184 EKILAAAKYKLNVDQKVIQA 1203
Score = 40 (19.1 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1 SLRYLQSVCNHPKLV--LGPSHAQY----EALVSRPGLNLSDIRHAAKLPALKQLL 50
++ L+ +CNHP + + S A++ ++S P L R + K L ++L
Sbjct: 1010 TIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDL----YRASGKFELLDRIL 1061
Score = 38 (18.4 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 54 GIGASPGMSGS--GPHYDPGAPPPSI 77
G G SPG S GP PG PPS+
Sbjct: 33 GPGPSPGSVHSMMGP--SPG--PPSV 54
Score = 37 (18.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 60 GMSGSGPHYDPGAPPPSIL 78
GMS +GP G P IL
Sbjct: 10 GMSHAGPSPGAGLSPGPIL 28
>UNIPROTKB|F1N8K9 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 GeneTree:ENSGT00560000076896
EMBL:AADN02065411 EMBL:AADN02065412 EMBL:AADN02065413
IPI:IPI00592819 Ensembl:ENSGALT00000023600 ArrayExpress:F1N8K9
Uniprot:F1N8K9
Length = 559
Score = 240 (89.5 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 53 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 109
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 110 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 169
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 170 ILERAKKKMVLDHLVI----QRMDT--TGK 193
Score = 36 (17.7 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P ++ + L IR + KL L +LL+
Sbjct: 3 LKKCCNHCYLIKPPDDNEFYN--KQEALQHL-IRSSGKLILLDKLLI 46
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 244 (91.0 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 61/152 (40%), Positives = 83/152 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 808 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 865 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 924
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGKIL 231
I+ K K++ + VI + +DT TG+ +
Sbjct: 925 IIERAKKKMVLDHLVI----QRMDT--TGRTI 950
Score = 47 (21.6 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 758 LKKCCNHCYLIKPPEENERE---NGQEILLSLIRSSGKLILLDKLL 800
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 245 (91.3 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 57/141 (40%), Positives = 79/141 (56%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ +++ I+E D F G YLRLDG+ + R ++ FN +P +
Sbjct: 428 TNHKVLLFCQMTSLMTIME-DYFAYR--GFKYLRLDGTTKAEDRGMLLKTFN-EPGSEYF 483
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 484 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 543
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 544 EEKILAAAKYKLNVDQKVIQA 564
Score = 39 (18.8 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 1 SLRYLQSVCNHP 12
++ L+ +CNHP
Sbjct: 371 TIMQLRKICNHP 382
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 243 (90.6 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 797 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 853
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 854 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 913
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 914 IIERAKKKMVLDHLVI----QRMDT--TGR 937
Score = 47 (21.6 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 747 LKKCCNHCYLIKPPEENERE---NGQEILLSLIRSSGKLILLDKLL 789
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 243 (90.6 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 790 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 846
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 847 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 906
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 907 IIERAKKKMVLDHLVI----QRMDT--TGR 930
Score = 47 (21.6 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 740 LKKCCNHCHLIKPPEENERE---NGQEVLLSLIRSSGKLILLDKLL 782
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 243 (90.6 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 810 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 866
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 867 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 926
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 927 IIERAKKKMVLDHLVI----QRMDT--TGR 950
Score = 47 (21.6 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 760 LKKCCNHCYLIKPPEENERE---NGQEILLSLIRSSGKLILLDKLL 802
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 243 (90.6 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 777 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 833
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 834 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 893
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 894 IIERAKKKMVLDHLVI----QRMDT--TGR 917
Score = 46 (21.3 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 727 LKKCCNHCYLIKPPEENERE---NGQEVLLSLIRSSGKLILLDKLL 769
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 244 (91.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 62/154 (40%), Positives = 85/154 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ + L M + RLDGS+ R + FN++ + D
Sbjct: 813 NRVLIFSQMVRMLDILADYL---SMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFL 869
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE
Sbjct: 870 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEED 929
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK-ILD 232
I+ K K++ + VI + +DT TG+ +LD
Sbjct: 930 IIERAKKKMVLDHLVI----QRMDT--TGRTVLD 957
Score = 45 (20.9 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD-IRHAAKLPALKQLL 50
L+ CNH L+ P + +A P +L +R KL L +LL
Sbjct: 763 LKKCCNHAFLIKQPEDGENDA----PQEHLQSLVRGGGKLVLLDKLL 805
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 243 (90.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 811 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 867
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 868 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 927
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 928 IIERAKKKMVLDHLVI----QRMDT--TGR 951
Score = 46 (21.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 761 LKKCCNHCYLIKPPEENERE---NGQEVLLSLIRSSGKLILLDKLL 803
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 243 (90.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 815 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 871
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 872 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 931
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 932 IIERAKKKMVLDHLVI----QRMDT--TGR 955
Score = 46 (21.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P ++ E + L S IR + KL L +LL
Sbjct: 765 LKKCCNHCYLIRAPEDSERET--GQEVLQ-SLIRSSGKLILLDKLL 807
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 243 (90.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 61/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 821 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 877
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 878 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 937
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TG+
Sbjct: 938 IIERAKKKMVLDHLVI----QRMDT--TGR 961
Score = 46 (21.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + + LS IR + KL L +LL
Sbjct: 771 LKKCCNHCYLIKPPEENERE---NGQEVLLSLIRSSGKLILLDKLL 813
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 247 (92.0 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 63/154 (40%), Positives = 85/154 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L P + RLDGS+ R + FN+D + D
Sbjct: 810 NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIKGEIRKQALDHFNADGSEDFCFL 866
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK T+EE+
Sbjct: 867 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 926
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK-ILD 232
I+ K K++ + VI + +DT TG+ +LD
Sbjct: 927 IIERAKKKMVLDHLVI----QRMDT--TGRTVLD 954
Score = 41 (19.5 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNH L+ P + E + L S IR + KL L +LL
Sbjct: 760 LKKCCNHCYLIKPPEENERENGIET--LQ-SLIRSSGKLILLDKLL 802
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 249 (92.7 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 60/141 (42%), Positives = 78/141 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E L YLRLDGS + R +VT++ + P + V
Sbjct: 1446 HRVLIYFQMTRMIDLMEEYL---TFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLL 1502
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHRIGQ+K V VYR IT+ T+EE+I
Sbjct: 1503 STRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERI 1562
Query: 201 MNLQKFKLLTANTVINS-ENR 220
+ K K VI+ E R
Sbjct: 1563 VIRAKEKEEVQKVVISGGETR 1583
Score = 38 (18.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 6 QSVCNHPKL 14
+ VCNHP L
Sbjct: 1135 RKVCNHPDL 1143
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 247 (92.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 54/127 (42%), Positives = 71/127 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+ I E L Y+RLDGS +R +V + ++P I +
Sbjct: 1253 HRILIYFQMTRMMQIFEEYL---AYKSYKYIRLDGSTTIESRREMVQAWQTNPEIFIFML 1309
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHRIGQ K V V+RL+T+NT+E+KI
Sbjct: 1310 STRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKI 1369
Query: 201 MNLQKFK 207
+ K K
Sbjct: 1370 LERAKEK 1376
Score = 38 (18.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 6 QSVCNHPKL 14
+ VCNHP L
Sbjct: 966 RKVCNHPDL 974
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 232 (86.7 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 987 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1043
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1044 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1103
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1104 ITQVAKRKMMLTHLVV 1119
Score = 56 (24.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 58 SPGMSG-SGPHYDPGAPPPSIL 78
+P M G GP DPG PPP L
Sbjct: 427 APFMVGLPGPDVDPGVPPPKPL 448
Score = 40 (19.1 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 935 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML 979
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 235 (87.8 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 59/145 (40%), Positives = 76/145 (52%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHA--IVTKFNSDPTID-VX 138
R LIF Q+ +LDI+E+ C G Y RLDG R + FN+ + +
Sbjct: 517 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIF 573
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT NT+EE
Sbjct: 574 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 633
Query: 199 KIMNLQKFKLLTANTVINSENRNLD 223
+I+ + KL + VI + R +D
Sbjct: 634 RIVERAEIKLRLDSIVIQ-QGRLID 657
Score = 47 (21.6 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 466 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 499
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 243 (90.6 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 57/141 (40%), Positives = 77/141 (54%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-- 136
T H+ L+FCQ+ ++ I+E D F YLRLDG+ + R ++ FN DP+
Sbjct: 1107 TNHKVLLFCQMTTLMTIME-DYFAYR--NFKYLRLDGTTKAEDRGMLLKNFN-DPSHQYF 1162
Query: 137 VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
+ ADTVI D DW+P +DLQA DRAHRIGQ+ V V RL T N++
Sbjct: 1163 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1222
Query: 197 EEKIMNLQKFKLLTANTVINS 217
EEKI+ K+KL VI +
Sbjct: 1223 EEKILAAAKYKLNVDQKVIQA 1243
Score = 43 (20.2 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 56 GASPGMS-GSGPHYDPGAPPPSILTQH 81
G GM G H G PPPS + QH
Sbjct: 91 GQMKGMGMRQGGHSGMG-PPPSPMDQH 116
Score = 41 (19.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL-NLSDI-RHAAKLPALKQLL 50
++ L+ +CNHP + + E L G+ SD+ R + K L ++L
Sbjct: 1050 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGSDLYRASGKFELLDRIL 1101
Score = 40 (19.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPH--YDPGAPPPS 76
+G SPG S H P PPS
Sbjct: 28 LGPSPGPSPGSAHGMMGPSPGPPS 51
Score = 37 (18.1 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G + G++G GP G PP
Sbjct: 169 GGAGGVAGPGPS---GGPP 184
Score = 36 (17.7 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 55 IGASPGMSGSGPHYDPGAP 73
+G SPG SG P P
Sbjct: 43 MGPSPGPPSSGHPLPPQGP 61
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 243 (90.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 62/169 (36%), Positives = 88/169 (52%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDV 137
T HR L+FCQ+ + I+E D G YLRLDG+ + R ++ KFN+ + + V
Sbjct: 1113 TNHRVLLFCQMTQCMTIIE-DYLGWRQFG--YLRLDGTTKAEDRGELLRKFNAKGSDVFV 1169
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTV+ D DW+P +DLQA DRAHRIGQ+ V V RL+T N++E
Sbjct: 1170 FLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVE 1229
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC--LDGQDSRQE 244
E+I+ ++KL VI + D +TG F + QD +E
Sbjct: 1230 ERILAAARYKLNMDEKVIQAGM--FDQKSTGSERQQFLQTILHQDDNEE 1276
Score = 43 (20.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 65 GPHYDPGAPPPSILTQH 81
GP PG PPP +QH
Sbjct: 220 GPPGAPGGPPPG--SQH 234
Score = 37 (18.1 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 61 MSGSGPHYDPGAPPP 75
+S GP PG PPP
Sbjct: 118 VSPGGP---PGGPPP 129
Score = 36 (17.7 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 5 LQSVCNHP 12
L+ +CNHP
Sbjct: 1061 LRKLCNHP 1068
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 245 (91.3 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 64/172 (37%), Positives = 90/172 (52%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P LT H+ L+F Q+ ++ I+E+ L YLRLDGS S R +++ +FN DP
Sbjct: 1197 PKLFLTGHKTLMFFQMTQIMTIMEDYL---RSKNWKYLRLDGSTKSDDRCSLLAQFN-DP 1252
Query: 134 TIDVXXXXXXXXXXXXXXX--XADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
DV ADTVI D DW+P +DLQA DRAHRIGQ K V + RLI
Sbjct: 1253 KSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLI 1312
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINS---ENRNLDTMATGKILDLFCLDGQD 240
T+ ++EE I++ ++KL VI + +N++ + L DG D
Sbjct: 1313 TEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDD 1364
Score = 41 (19.5 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDI-RHAAKLPALKQLL 50
L+ +CNHP + E + G N+ + R A K L ++L
Sbjct: 1155 LKKICNHPFIF-----EDVERAIDPSGTNVDLLWRAAGKFELLDRIL 1196
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 232 (86.7 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 957 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1013
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1014 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1073
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1074 ITQVAKRKMMLTHLVV 1089
Score = 52 (23.4 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 58 SPGMSG-SGPHYDPGAPPPSIL 78
+P M G GP +PG PPP L
Sbjct: 398 APFMVGLPGPDVEPGVPPPKPL 419
Score = 40 (19.1 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 905 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML 949
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 232 (86.7 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 973 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1029
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1030 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1089
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1090 ITQVAKRKMMLTHLVV 1105
Score = 52 (23.4 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 58 SPGMSG-SGPHYDPGAPPPSIL 78
+P M G GP +PG PPP L
Sbjct: 414 APFMVGLPGPDVEPGVPPPKPL 435
Score = 40 (19.1 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 921 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML 965
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 232 (86.7 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 904 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 960
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 961 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1020
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1021 ITQVAKRKMMLTHLVV 1036
Score = 52 (23.4 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 58 SPGMSG-SGPHYDPGAPPPSIL 78
+P M G GP +PG PPP L
Sbjct: 345 APFMVGLPGPDVEPGVPPPKPL 366
Score = 40 (19.1 bits), Expect = 6.6e-19, Sum P(2) = 6.6e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 852 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML 896
>UNIPROTKB|J9P9W7 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00271 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 GeneTree:ENSGT00530000063427 EMBL:AAEX03004381
EMBL:AAEX03004385 EMBL:AAEX03004386 EMBL:AAEX03004382
EMBL:AAEX03004383 EMBL:AAEX03004384 EMBL:AAEX03004387
EMBL:AAEX03004388 Ensembl:ENSCAFT00000045283 OMA:PATANNS
Uniprot:J9P9W7
Length = 1470
Score = 253 (94.1 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 59/154 (38%), Positives = 78/154 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLD++E L G YLRLDGS R A++ +FN+D I
Sbjct: 303 HRVLIFTQMTRMLDVLEQFL---TYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFIL 359
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTV+F D DW+P D QA DR HRIGQ + V++YRLI++ T+EE I
Sbjct: 360 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 419
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
+ K + + I N I +LF
Sbjct: 420 LKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 453
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 238 (88.8 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 62/183 (33%), Positives = 89/183 (48%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VXX 139
R LIF Q+ +LDI+E+ C Y R+DGS R + ++N P + V
Sbjct: 508 RVLIFSQMSRLLDILED---YCYFRDFEYCRIDGSTSHEERIEAIDEYNK-PNSEKFVFL 563
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAMDRAHRIGQKK V+VYR +T+N +EEK
Sbjct: 564 LTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEK 623
Query: 200 IMNLQKFKLLTANTVINS-ENRNLDTMATGK--ILDLFCLDGQDSRQEAGSSGTNPGGLK 256
++ KL VI + ++ K +LD+ ++ ++ S T +
Sbjct: 624 VIERAAQKLRLDQLVIQQGTGKKTASLGNSKDDLLDMIQFGAKNMFEKKASKVTVDADID 683
Query: 257 GLL 259
+L
Sbjct: 684 DIL 686
Score = 40 (19.1 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 5 LQSVCNHPKLVLG----PSHAQYEALVSRPG 31
L+ CNHP L G P + E L+ G
Sbjct: 460 LRKCCNHPYLFEGAEPGPPYTTDEHLIFNSG 490
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 252 (93.8 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 56/130 (43%), Positives = 77/130 (59%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLDI+ + + E G TY RLDG++ S +R + +N+ + D
Sbjct: 773 HRVLIFSQMVKMLDILGDYM---EYRGYTYQRLDGTIPSASRRLAIEHYNAPDSSDFAFI 829
Query: 141 XXXXXXXXXXXX-XADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM RAHRIGQ K V+VYRL++K+T+EE+
Sbjct: 830 LSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTVEEE 889
Query: 200 IMNLQKFKLL 209
++ + KLL
Sbjct: 890 VIERARNKLL 899
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 240 (89.5 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 64/181 (35%), Positives = 94/181 (51%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P + HR L+F Q+ +++I+E+ L + YLRLDGS + R ++ FN DP
Sbjct: 746 PKLFRSGHRILMFFQMTQIMNIMEDYLHYRQW---RYLRLDGSTKADDRSKLLGVFN-DP 801
Query: 134 TIDVXXXXXXXXXXXXXXX--XADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
T +V ADTVI D DW+P +DLQA DRAHRIGQ K V +YRLI
Sbjct: 802 TAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLI 861
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC---LDGQDSRQEAGSS 248
T+ ++EE I+ ++KL VI + D +T + + F L+ ++ +E
Sbjct: 862 TEKSVEENILARAQYKLDIDGKVIQAGK--FDNKSTPEEREAFLRSLLENENGEEENDEK 919
Query: 249 G 249
G
Sbjct: 920 G 920
Score = 38 (18.4 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 5 LQSVCNHP 12
L+ +CNHP
Sbjct: 704 LKKICNHP 711
Score = 37 (18.1 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 4 YLQSVCNHPKLV-LGPSHAQYEA 25
YLQ+VC H + + + +AQ A
Sbjct: 271 YLQTVCAHGREINVRTKNAQARA 293
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 232 (86.7 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1039 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1095
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1096 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1155
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1156 ITQVAKRKMMLTHLVV 1171
Score = 51 (23.0 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 58 SPGMSG-SGPHYDPGAPPP 75
+P M G GP +PG PPP
Sbjct: 480 APFMVGLPGPEVEPGMPPP 498
Score = 39 (18.8 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSD-IRHAAKLPALKQLL 50
L+ CNHP L P A ++ + S ++ + KL L+++L
Sbjct: 987 LKKCCNHPYLF--PVAAVEAPMLPNGSYDGSSLVKSSGKLMLLQKML 1031
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 233 (87.1 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 214 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQDSINAYNEPN 270
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 271 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 330
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 331 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 374
Score = 39 (18.8 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 171 LMQLRKCCNHPYLFDG 186
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 251 (93.4 bits), Expect = 6.3e-20, P = 6.3e-20
Identities = 56/137 (40%), Positives = 79/137 (57%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+ + L + G+ + RLDG+V S R + FNS + D V
Sbjct: 712 HRVLIFSQMVRMLDILGDYL---SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 768
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQAM RAHRIGQK V VYRL++K+T+EE+
Sbjct: 769 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 828
Query: 200 IMNLQKFKLLTANTVIN 216
++ + K++ +I+
Sbjct: 829 VLERARKKMILEYAIIS 845
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 236 (88.1 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P + Q R LIF Q+ +LDI+E+ C Y RLDG R A + +N
Sbjct: 478 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQASINAYNEPG 534
Query: 134 TID-VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
+ V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 535 SSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 594
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 595 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQM 638
Score = 39 (18.8 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 435 LMQLRKCCNHPYLFDG 450
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 233 (87.1 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 53/144 (36%), Positives = 76/144 (52%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXXX 140
R L+F Q+ +LDI+++ C YLR+DGS R + +FN + +
Sbjct: 644 RVLLFSQMTRLLDIIDD---YCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLL 700
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D D++P D+QAMDRAHRIGQKK V VYR +T+N++EEKI
Sbjct: 701 STRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKI 760
Query: 201 MNLQKFKLLTANTVINSENRNLDT 224
+ KL + +I NL++
Sbjct: 761 VERAAKKLKLDSLIIQKGKLNLNS 784
Score = 45 (20.9 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 2 LRYLQSVCNHPKLVLG---PSHAQYEALVSRPG-LNLSDIRHAAKLPALKQ 48
L L+ CNHP L G P + + L+ G ++L D LP LK+
Sbjct: 594 LMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLD----KLLPRLKK 640
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 233 (87.1 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 53/144 (36%), Positives = 76/144 (52%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXXX 140
R L+F Q+ +LDI+++ C YLR+DGS R + +FN + +
Sbjct: 644 RVLLFSQMTRLLDIIDD---YCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLL 700
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D D++P D+QAMDRAHRIGQKK V VYR +T+N++EEKI
Sbjct: 701 STRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKI 760
Query: 201 MNLQKFKLLTANTVINSENRNLDT 224
+ KL + +I NL++
Sbjct: 761 VERAAKKLKLDSLIIQKGKLNLNS 784
Score = 45 (20.9 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 2 LRYLQSVCNHPKLVLG---PSHAQYEALVSRPG-LNLSDIRHAAKLPALKQ 48
L L+ CNHP L G P + + L+ G ++L D LP LK+
Sbjct: 594 LMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLD----KLLPRLKK 640
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 230 (86.0 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
Identities = 56/144 (38%), Positives = 78/144 (54%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV- 137
T HR LIF Q+ MLDI+ D K + RLDGS+ R + +FN+ + D
Sbjct: 1080 TGHRVLIFSQMVRMLDILA-DYLKGR--SFQFQRLDGSMSREKRSQAMDRFNAVDSPDFC 1136
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P DLQA RAHRIGQK VN+YRL++K+++E
Sbjct: 1137 FLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVE 1196
Query: 198 EKIMNLQKFKLLTANTVINSENRN 221
E I+ K K++ + VI + ++
Sbjct: 1197 EDILERAKQKMVLDHLVIQTMEKS 1220
Score = 51 (23.0 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L +A+ E + L S IR + KL L +LL+
Sbjct: 1032 LKKTCNHPYLY---QNARDECELGAKDLLDSMIRASGKLVLLDKLLI 1075
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 247 (92.0 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 60/143 (41%), Positives = 76/143 (53%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P + Q R LIF Q+ MLDI+E+ C Y RLDG R+ + +FN D
Sbjct: 441 PKLQEQGSRVLIFSQMTRMLDILED---YCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDN 497
Query: 134 TID-VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
+ + AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT
Sbjct: 498 SAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLIT 557
Query: 193 KNTLEEKIMNLQKFKLLTANTVI 215
++T+EEKI+ + KL VI
Sbjct: 558 ESTVEEKIVERAEVKLRLDKMVI 580
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 235 (87.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 57/168 (33%), Positives = 82/168 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HRALIF Q+ MLD++E L + G YLRLDG+ R + +FN+D I
Sbjct: 1390 HRALIFTQMTKMLDVLEQFL---NIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFIL 1446
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D Q DR HRIGQ + V++YR +++ T+E I
Sbjct: 1447 SSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNI 1506
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSS 248
+ K + + VI D + D+ D + + EA ++
Sbjct: 1507 LRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMIGND-EALKDEASAA 1553
Score = 44 (20.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 2 LRYLQSVCNHPKL 14
L L+ VCNHP L
Sbjct: 1113 LMQLRKVCNHPDL 1125
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 250 (93.1 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 66/182 (36%), Positives = 94/182 (51%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV- 137
T HR LIF Q+ MLD++ + L K P + RLDGS+ R + FN++ + D
Sbjct: 851 TGHRVLIFSQMVRMLDVLADYLQKRHFP---FQRLDGSIKGEMRRQALDHFNAEGSQDFC 907
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P DLQA RAHRIGQK VN+YRL+T ++E
Sbjct: 908 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVE 967
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKG 257
E+I+ K K++ + VI + +DT TG+ + LD + + S+ N L
Sbjct: 968 EQIVERAKQKMVLDHLVI----QRMDT--TGRTV----LDKSGNGHSSNSNPFNKDDLSA 1017
Query: 258 LL 259
+L
Sbjct: 1018 IL 1019
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 228 (85.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 60/157 (38%), Positives = 80/157 (50%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P L H+ LIF Q+ ++LDI+++ L G + R+DGS+ R A + +F S P
Sbjct: 843 PKLKLGNHKVLIFSQMVSVLDILDDYL---TYRGYPHERIDGSIKGNDRQAAIDRF-SKP 898
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADTVI D DW+P DLQA R HRIGQ K+V VYRL+
Sbjct: 899 DSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDKMVKVYRLV 958
Query: 192 TKNTLEE-------KIMNLQKFKLLTANTVINSENRN 221
TKNT E K + L + L N++ +S N N
Sbjct: 959 TKNTYERLMFDKASKKLGLDRAVLTKMNSLADSNNGN 995
Score = 54 (24.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIG 56
L+ CNHP L G ++ ++ + + I+ + KL + +LL +G
Sbjct: 797 LRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQASGKLVLIDKLLPKLKLG 848
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 231 (86.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 58/157 (36%), Positives = 79/157 (50%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R LIF Q+ MLDI+E+ + G Y R+DGS S R + +N P D+
Sbjct: 599 RVLIFSQMSRMLDILEDYML---YRGYKYARIDGSTESIVRENSIENYNK-PGSDLFAFL 654
Query: 142 XXXXXXXXXXX--XADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
AD VI D DW+P DLQA DRAHRIGQ K V VYR +T+N++EEK
Sbjct: 655 LTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEK 714
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCL 236
++ + KL VI + R ++ K +L +
Sbjct: 715 MVEKAEMKLQLDALVIQ-QGRLVEANKNAKPEELLAM 750
Score = 44 (20.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 5 LQSVCNHPKLVLGPSHAQY---EALVSRPG 31
L+ CNHP L G Y E L+ G
Sbjct: 552 LRKACNHPYLFDGAEEEPYTTGEHLIDNSG 581
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 234 (87.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 493 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQESINAYNEPN 549
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 550 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 609
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 610 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 653
Score = 39 (18.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 54 GIGASPGMSGSGP 66
G+ A+P +G+GP
Sbjct: 41 GVPAAPSAAGAGP 53
Score = 39 (18.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 450 LMQLRKCCNHPYLFDG 465
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 234 (87.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 493 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQESINAYNEPN 549
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 550 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 609
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 610 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 653
Score = 39 (18.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 450 LMQLRKCCNHPYLFDG 465
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 234 (87.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 493 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQESINAYNEPN 549
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 550 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 609
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 610 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 653
Score = 39 (18.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 450 LMQLRKCCNHPYLFDG 465
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 240 (89.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 805 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 861
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 862 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 921
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 922 ILERAKKKMVLDHLVI----QRMDT--TGK 945
Score = 38 (18.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P + ++ + L IR + KL L +LL+
Sbjct: 755 LKKCCNHCYLIKPPDNNEFYN--KQEALQHL-IRSSGKLILLDKLLI 798
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 240 (89.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 804 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 860
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 861 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 920
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 921 ILERAKKKMVLDHLVI----QRMDT--TGK 944
Score = 38 (18.4 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P + ++ + L IR + KL L +LL+
Sbjct: 754 LKKCCNHCYLIKPPDNNEFYN--KQEALQHL-IRSSGKLILLDKLLI 797
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 240 (89.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 803 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 859
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 860 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 919
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 920 ILERAKKKMVLDHLVI----QRMDT--TGK 943
Score = 38 (18.4 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P + ++ + L IR + KL L +LL+
Sbjct: 753 LKKCCNHCYLIKPPDNNEFYN--KQEALQHL-IRSSGKLILLDKLLI 796
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 240 (89.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 787 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 843
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 844 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 903
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 904 ILERAKKKMVLDHLVI----QRMDT--TGK 927
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P + ++ + L IR + KL L +LL+
Sbjct: 737 LKKCCNHCYLIKPPDNNEFYN--KQEALQHL-IRSSGKLILLDKLLI 780
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 240 (89.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 817 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 873
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 874 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 933
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 934 ILERAKKKMVLDHLVI----QRMDT--TGK 957
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P + ++ + L IR + KL L +LL+
Sbjct: 767 LKKCCNHCYLIKPPDNNEFYN--KQEALQHL-IRSSGKLILLDKLLI 810
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 233 (87.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 492 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQDSINAYNEPN 548
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 549 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 608
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 609 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 652
Score = 39 (18.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 449 LMQLRKCCNHPYLFDG 464
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 233 (87.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 492 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQDSINAYNEPN 548
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 549 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 608
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 609 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 652
Score = 39 (18.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 449 LMQLRKCCNHPYLFDG 464
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 233 (87.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 60/164 (36%), Positives = 82/164 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-D 132
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + +N +
Sbjct: 493 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYEYCRLDGQTPHDERQDSINAYNEPN 549
Query: 133 PTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
T V AD VI D DW+P DLQAMDRAHRIGQ K V V+R IT
Sbjct: 550 STKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFIT 609
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSE---NRNLDTMATGKILDL 233
NT+EE+I+ + KL + VI ++NL+ + ++L +
Sbjct: 610 DNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQM 653
Score = 39 (18.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 450 LMQLRKCCNHPYLFDG 465
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 247 (92.0 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 62/150 (41%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLDI++ L P RLDGS+ + R + +N+ + D
Sbjct: 728 HRVLIFSQMVMMLDILQEYLQLRRFPSQ---RLDGSMRADLRKQALDHYNAPGSTDFAFL 784
Query: 141 XXXXXXXXXXX-XXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM RAHRIGQ K VN+YRL+TK ++EE+
Sbjct: 785 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEE 844
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K KL+ + VI + +DT TGK
Sbjct: 845 IVERAKRKLVLDHLVI----QRMDT--TGK 868
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 232 (86.7 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 424 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 480
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 481 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 540
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 541 ITQVAKRKMMLTHLVV 556
Score = 40 (19.1 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 372 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML 416
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 239 (89.2 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 65/173 (37%), Positives = 86/173 (49%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDV 137
T HR LIF Q+ ++DI+E+ L + YLRLDG S R ++ FN+ D
Sbjct: 1102 TGHRVLIFFQMTQIMDIMEDFL---RYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLC 1158
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P +DLQA DRAHRIGQK V + RLIT N++E
Sbjct: 1159 FILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVE 1218
Query: 198 EKIMNLQKFKLLTANTVINSEN-RNLDTMATGKILDLFCLDGQDSRQEAGSSG 249
E I+ KL VI + N T + L LD ++ R++ SG
Sbjct: 1219 EVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESG 1271
Score = 38 (18.4 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 5 LQSVCNHP 12
L+ +CNHP
Sbjct: 1055 LKKICNHP 1062
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 232 (86.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 60/152 (39%), Positives = 77/152 (50%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P + Q R LIF Q+ +LDI+E+ C Y RLDG R + FN +P
Sbjct: 476 PKLKEQGSRVLIFSQMTRVLDILED---YCMWRNYGYCRLDGQTPHEERQISINAFN-EP 531
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
+ AD VI D DW+P DLQAMDRAHRIGQKK V V+R I
Sbjct: 532 NSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFI 591
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
T NT+EE+I+ + KL + VI + R +D
Sbjct: 592 TDNTVEERIVERAEMKLRLDSIVIQ-QGRLVD 622
Score = 39 (18.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 LRYLQSVCNHPKLVLG 17
L L+ CNHP L G
Sbjct: 433 LMQLRKCCNHPYLFDG 448
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 227 (85.0 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 53/147 (36%), Positives = 79/147 (53%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVX 138
T+ + ++ LDI+EN + M G+++ RLDGS+ + R +IVT FN +P I
Sbjct: 680 TKEKVVVVSNYTQTLDIIENLM---NMAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGF 736
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
A +I D+DW+P DLQAM R HR GQKK +YRL+T ++E
Sbjct: 737 LLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDE 796
Query: 199 KIMNLQKFK-LLTANTVINSENRNLDT 224
KI+ Q K L+ + +SE RN ++
Sbjct: 797 KILQRQLMKNSLSQKFLGDSEMRNKES 823
Score = 43 (20.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 32 LNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHY 68
L+ + ++ L + L C SPG+ GS P+Y
Sbjct: 611 LDFGQLTFSSSLGLITLLKKVCN---SPGLVGSDPYY 644
Score = 36 (17.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 5 LQSVCNHPKLV 15
L+ VCN P LV
Sbjct: 628 LKKVCNSPGLV 638
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 240 (89.5 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 801 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 857
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 858 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 917
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 918 ILERAKKKMVLDHLVI----QRMDT--TGK 941
Score = 36 (17.7 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P ++ + L IR + KL L +LL+
Sbjct: 751 LKKCCNHCYLIKPPDDNEFYN--KQEALQHL-IRSSGKLILLDKLLI 794
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 243 (90.6 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 60/153 (39%), Positives = 77/153 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ + + G +Y R+DGSV RH + F P I +
Sbjct: 369 HRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFIFLL 424
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIFVD D++P DLQA RAHRIGQ K V V RLI ++T+EE I
Sbjct: 425 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEII 484
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL NT+I L DL
Sbjct: 485 CRKAASKLKLTNTIIEGGRFTLGAQRPAAEADL 517
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 232 (86.7 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1041 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1097
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1098 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1157
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1158 ITQVAKRKMMLTHLVV 1173
Score = 45 (20.9 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 58 SPGMSG-SGPHYDPGAPPPSIL 78
+P M G GP +P PPP L
Sbjct: 482 APFMVGLPGPDVEPSLPPPKPL 503
Score = 40 (19.1 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 989 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML 1033
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 232 (86.7 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 49/142 (34%), Positives = 76/142 (53%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
PP + + H+ LIF Q +LD++E+ L + + RLDGS R +++FN++P
Sbjct: 621 PPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNP 680
Query: 134 TIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
V ADTVI +D+DW+P DLQA+DR HRIGQ V ++R + K
Sbjct: 681 KFKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIK 740
Query: 194 NTLEEKIMNLQKFKLLTANTVI 215
+++EE +++ K VI
Sbjct: 741 DSIEEVLISRSGSKRFLERLVI 762
Score = 36 (17.7 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 37 IRHAAKLPALKQLL 50
IR++AK L QLL
Sbjct: 607 IRNSAKFQVLNQLL 620
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 232 (86.7 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 49/142 (34%), Positives = 76/142 (53%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
PP + + H+ LIF Q +LD++E+ L + + RLDGS R +++FN++P
Sbjct: 621 PPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNP 680
Query: 134 TIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
V ADTVI +D+DW+P DLQA+DR HRIGQ V ++R + K
Sbjct: 681 KFKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIK 740
Query: 194 NTLEEKIMNLQKFKLLTANTVI 215
+++EE +++ K VI
Sbjct: 741 DSIEEVLISRSGSKRFLERLVI 762
Score = 36 (17.7 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 37 IRHAAKLPALKQLL 50
IR++AK L QLL
Sbjct: 607 IRNSAKFQVLNQLL 620
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 240 (89.5 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 797 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 853
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 854 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 913
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 914 ILERAKKKMVLDHLVI----QRMDT--TGK 937
Score = 36 (17.7 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P ++ + L IR + KL L +LL+
Sbjct: 747 LKKCCNHCYLIKPPDDNEFYN--KQEALQHL-IRSSGKLILLDKLLI 790
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 240 (89.5 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 60/150 (40%), Positives = 82/150 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
+R LIF Q+ MLDI+ L + P + RLDGS+ R + FN++ + D
Sbjct: 797 NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKGELRKQALDHFNAEGSEDFCFL 853
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P DLQA RAHRIGQKK VN+YRL+TK ++EE
Sbjct: 854 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 913
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGK 229
I+ K K++ + VI + +DT TGK
Sbjct: 914 ILERAKKKMVLDHLVI----QRMDT--TGK 937
Score = 36 (17.7 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNH L+ P ++ + L IR + KL L +LL+
Sbjct: 747 LKKCCNHCYLIKPPDDNEFYN--KQEALQHL-IRSSGKLILLDKLLI 790
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 236 (88.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 60/178 (33%), Positives = 93/178 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LI+ Q+ M+D++E L + ++RLDGS R +V + ++P I V
Sbjct: 1316 HRVLIYFQMTKMMDLMEEYLTYRQY---NHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLL 1372
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ + V VYRL+ + T+EE++
Sbjct: 1373 STRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERM 1432
Query: 201 MNLQKFKLLTANTVIN--SENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLK 256
+ K K V+ ++ +N+ T+ G+ D + +R+ GS + G+K
Sbjct: 1433 RDRAKQKEQVQQVVMEGKTQEKNIKTIEVGEN------DSEVTRE--GSKSISQDGIK 1482
Score = 38 (18.4 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 6 QSVCNHPKL 14
+ VCNHP L
Sbjct: 1008 RKVCNHPDL 1016
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 222 (83.2 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1307 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1362
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1363 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1422
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1423 EMFDKASLKLGLDKAVLQS 1441
Score = 47 (21.6 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E D + A + A +L++
Sbjct: 1248 LRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVL 1294
Score = 38 (18.4 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 212 NTVINSENRNLDTMATGKILDLFCLDGQDSRQ 243
N V +SE + D G D L+G D+ +
Sbjct: 2929 NAVGSSEEKAADKAEGGPFKDGETLEGSDAEE 2960
Score = 36 (17.7 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPHYDPGAPPPSIL 78
+G+ P M PH P PP +
Sbjct: 424 VGSYPNM----PHPQPSHQPPGAM 443
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 240 (89.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 57/176 (32%), Positives = 88/176 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+ V
Sbjct: 1051 HRVLIFSQMTKMLDLLEDFL---ENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFL 1107
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTV+ D DW+P D+QA RAHRIGQ K V +YR +TK ++EE+
Sbjct: 1108 LSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEER 1167
Query: 200 IMNLQKFKLLTANTVINSE-NRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGG 254
I + K K++ + V+ +M+ ++ D+ ++ ++ G G N G
Sbjct: 1168 ITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEGE-GENKEG 1222
Score = 36 (17.7 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 999 LKKCCNHPYL 1008
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 240 (89.5 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 53/136 (38%), Positives = 73/136 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLD++E+ L E G Y R+DG V R + +FN+ V
Sbjct: 1077 HRVLIFSQMTKMLDLLEDFL---ENEGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFL 1133
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +TK ++EE+
Sbjct: 1134 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEER 1193
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1194 ITQVAKKKMMLTHLVV 1209
Score = 36 (17.7 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1025 LKKCCNHPYL 1034
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 222 (83.2 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1257 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1312
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1313 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1372
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1373 EMFDKASLKLGLDKAVLQS 1391
Score = 48 (22.0 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 1198 LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVL 1244
Score = 42 (19.8 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 56 GASPGMSGSGPHYDPGAPP 74
G PG GP PG P
Sbjct: 183 GPGPGHLSHGPPQSPGVAP 201
Score = 36 (17.7 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 239 QDSRQEAGSSGTNPGGLKGLLDTLP 263
QD E G+ + P G++ +D+ P
Sbjct: 2148 QDREAELGAGKSEPRGVEVGVDSGP 2172
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 220 (82.5 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 57/159 (35%), Positives = 82/159 (51%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I + LIF Q +ML ++E++L G+ Y++L GS +T R +V KF
Sbjct: 975 PEQIDEGRKILIFSQFTSMLSLIEDELIDA---GIGYVKLTGS--TTKRQEVVDKFQRGE 1029
Query: 134 TIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
+ V ADTVI D W+P + QA DRA+RIGQ K V VY+LI +
Sbjct: 1030 -VPVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIE 1088
Query: 194 NTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILD 232
N++EEKI +Q+ K A +++ E + T ILD
Sbjct: 1089 NSIEEKIQKIQQNKAELAKALLSEEVSDNKLSLTDDILD 1127
Score = 50 (22.7 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 1 SLRYLQSVCNHPKLV 15
+L L+ VCNHPKL+
Sbjct: 939 ALLKLRQVCNHPKLL 953
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 220 (82.5 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 57/159 (35%), Positives = 82/159 (51%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I + LIF Q +ML ++E++L G+ Y++L GS +T R +V KF
Sbjct: 975 PEQIDEGRKILIFSQFTSMLSLIEDELIDA---GIGYVKLTGS--TTKRQEVVDKFQRGE 1029
Query: 134 TIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
+ V ADTVI D W+P + QA DRA+RIGQ K V VY+LI +
Sbjct: 1030 -VPVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIE 1088
Query: 194 NTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILD 232
N++EEKI +Q+ K A +++ E + T ILD
Sbjct: 1089 NSIEEKIQKIQQNKAELAKALLSEEVSDNKLSLTDDILD 1127
Score = 50 (22.7 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 1 SLRYLQSVCNHPKLV 15
+L L+ VCNHPKL+
Sbjct: 939 ALLKLRQVCNHPKLL 953
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 232 (86.7 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 59/172 (34%), Positives = 88/172 (51%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDV 137
T H+ LIF Q+ +++I+E+ L G+ Y+RLDG + R ++ FN+ D
Sbjct: 1117 TGHKVLIFFQMTQIMNIMEDFL---RFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFC 1173
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P +DLQA DRAHRIGQK V + RLIT+N++E
Sbjct: 1174 FLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVE 1233
Query: 198 EKIMNLQKFKLLTANTVINSEN-RNLDTMATGKILDLFCLDGQDSRQEAGSS 248
E I+ KL VI + N T + + ++ +D R++ G +
Sbjct: 1234 EMILERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGT 1285
Score = 42 (19.8 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDI--RHAAKLPALKQLL 50
L+ +CNHP + + + E L++ P + +D R A K L ++L
Sbjct: 1070 LKKICNHPFV-----YEEVENLIN-PNIETNDQIWRVAGKFELLDKVL 1111
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 232 (86.7 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 59/172 (34%), Positives = 88/172 (51%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDV 137
T H+ LIF Q+ +++I+E+ L G+ Y+RLDG + R ++ FN+ D
Sbjct: 1117 TGHKVLIFFQMTQIMNIMEDFL---RFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFC 1173
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P +DLQA DRAHRIGQK V + RLIT+N++E
Sbjct: 1174 FLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVE 1233
Query: 198 EKIMNLQKFKLLTANTVINSEN-RNLDTMATGKILDLFCLDGQDSRQEAGSS 248
E I+ KL VI + N T + + ++ +D R++ G +
Sbjct: 1234 EMILERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGT 1285
Score = 42 (19.8 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDI--RHAAKLPALKQLL 50
L+ +CNHP + + + E L++ P + +D R A K L ++L
Sbjct: 1070 LKKICNHPFV-----YEEVENLIN-PNIETNDQIWRVAGKFELLDKVL 1111
>UNIPROTKB|B5MDZ7 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:AL356378 GO:GO:0003676 GO:GO:0004386
InterPro:IPR002589 PROSITE:PS51154 HGNC:HGNC:1916 ChiTaRS:CHD1L
IPI:IPI00400835 ProteinModelPortal:B5MDZ7 SMR:B5MDZ7 STRING:B5MDZ7
PRIDE:B5MDZ7 Ensembl:ENST00000361293 HOGENOM:HOG000074191
HOVERGEN:HBG104833 ArrayExpress:B5MDZ7 Bgee:B5MDZ7 Uniprot:B5MDZ7
Length = 616
Score = 238 (88.8 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 59/153 (38%), Positives = 77/153 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ + + G +Y R+DGSV RH + F P I V
Sbjct: 83 HRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLL 138
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIFVD D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 139 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 198
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL N +I + L DL
Sbjct: 199 YRKAASKLQLTNMIIEGGHFTLGAQKPAADADL 231
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 222 (83.2 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1297 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1352
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1353 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1412
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1413 EMFDKASLKLGLDKAVLQS 1431
Score = 47 (21.6 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E D + A + A +L++
Sbjct: 1238 LRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVL 1284
Score = 40 (19.1 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 55 IGASPGMSGSGPHYDPGAPP-PSI 77
+G++PG + PH PP P +
Sbjct: 89 MGSAPGNGLASPHSQYHTPPVPQV 112
Score = 40 (19.1 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 38 RHAAKLPALKQLLMDCGIGASPGMSGSGP---HYDPGA 72
+H + P+ +QL + PG+ S P H+ P A
Sbjct: 494 QHPGQQPSFQQLPTCPPLQPHPGLHQSSPPHPHHQPWA 531
Score = 36 (17.7 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 212 NTVINSENRNLDTMATGKILDLFCLDGQDSRQ 243
N V SE + D G D L+G D+ +
Sbjct: 2918 NAVGTSEEKAADKAEGGPCKDGETLEGSDAEE 2949
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 243 (90.6 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 55/137 (40%), Positives = 79/137 (57%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR LIF Q+ MLDI+ + +F + G + RLDG+V S+ R + FN+ + D
Sbjct: 691 HRVLIFSQMVRMLDILGDYMF---IKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFL 747
Query: 141 XXXXXXXXXXXX-XADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM RAHRIGQK V+VYR ++K+T+EE+
Sbjct: 748 LSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQ 807
Query: 200 IMNLQKFKLLTANTVIN 216
I+ + K++ +I+
Sbjct: 808 ILERARKKMVLEYAIIS 824
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 241 (89.9 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 62/150 (41%), Positives = 79/150 (52%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXXX 140
R LIF Q MLD++E+ F C Y RLDGS R + +N+ D +
Sbjct: 453 RVLIFSQFSRMLDLLED--F-CWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFML 509
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+RLIT+NT++E+I
Sbjct: 510 TTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERI 569
Query: 201 MNLQKFKLLTANTVINSENRNLDTMAT-GK 229
+ + KL N VI + R + T GK
Sbjct: 570 IEKAEAKLRLDNIVIQ-QGRMSEAQKTLGK 598
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 234 (87.4 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 55/127 (43%), Positives = 68/127 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L++ Q+ M+D++E L Y RLDGS R V F P I V
Sbjct: 1338 HRVLLYFQMTRMIDLMEEYL---TYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLL 1394
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D DW+P D QAMDRAHR+GQ + V VYRLIT++T+EE+I
Sbjct: 1395 STRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERI 1454
Query: 201 MN--LQK 205
LQK
Sbjct: 1455 RKRALQK 1461
Score = 38 (18.4 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 6 QSVCNHPKL 14
+ VCNHP L
Sbjct: 1091 RKVCNHPDL 1099
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 242 (90.2 bits), Expect = 5.2e-19, P = 5.2e-19
Identities = 54/137 (39%), Positives = 77/137 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ ML+I+ + + G Y RLDG++ ++ R + FN+ + D V
Sbjct: 721 HRVLIFSQMVRMLNILGEYM---SLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFL 777
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM RAHRIGQK VNVYR ++K+T+EE
Sbjct: 778 LSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEED 837
Query: 200 IMNLQKFKLLTANTVIN 216
I+ + K++ +I+
Sbjct: 838 ILERARRKMILEYAIIS 854
>GENEDB_PFALCIPARUM|PFF1185w [details] [associations]
symbol:PFF1185w "iswi protein homologue"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00490 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844505 RefSeq:XP_966228.1 ProteinModelPortal:C6KT82
IntAct:C6KT82 PRIDE:C6KT82 EnsemblProtists:PFF1185w:mRNA
GeneID:3885918 KEGG:pfa:PFF1185w EuPathDB:PlasmoDB:PF3D7_0624600
OMA:EERMAFR ProtClustDB:CLSZ2515339 Uniprot:C6KT82
Length = 2719
Score = 216 (81.1 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 51/140 (36%), Positives = 77/140 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVXX 139
H+ LIF Q + +LD +E C+ Y+RLDGS R + +FN SD +
Sbjct: 1094 HKVLIFTQFQLVLDELEE---YCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIYL 1150
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
A+ VI D DW+P DLQA+DRAHRIGQK+ VNV++L+T+ T+EE+
Sbjct: 1151 ISTRAGGLGINLTAANHVIMYDEDWNPFIDLQAIDRAHRIGQKREVNVWKLMTEWTVEER 1210
Query: 200 IMNLQKFKLLTANTVINSEN 219
+ ++ KL V+ +++
Sbjct: 1211 MAFRREQKLKLDKLVVQTQD 1230
Score = 49 (22.3 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 5 LQSVCNHPK-LVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALK 47
++ +C HPK +V PS Q E L + DI+ K ALK
Sbjct: 664 MRIICGHPKGIVSRPS--QMEKLFAFFEEESEDIKEQVKNDALK 705
Score = 37 (18.1 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 208 LLTANTVINSENRNLDTMATGKILDLFCLD 237
LL +N I + N+N LD+F +D
Sbjct: 2450 LLKSNEQIENMNKNSGYSINDFNLDIFNID 2479
>UNIPROTKB|C6KT82 [details] [associations]
symbol:PFF1185w "Smarca-related protein" species:36329
"Plasmodium falciparum 3D7" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00490 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844505 RefSeq:XP_966228.1 ProteinModelPortal:C6KT82
IntAct:C6KT82 PRIDE:C6KT82 EnsemblProtists:PFF1185w:mRNA
GeneID:3885918 KEGG:pfa:PFF1185w EuPathDB:PlasmoDB:PF3D7_0624600
OMA:EERMAFR ProtClustDB:CLSZ2515339 Uniprot:C6KT82
Length = 2719
Score = 216 (81.1 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 51/140 (36%), Positives = 77/140 (55%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVXX 139
H+ LIF Q + +LD +E C+ Y+RLDGS R + +FN SD +
Sbjct: 1094 HKVLIFTQFQLVLDELEE---YCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIYL 1150
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
A+ VI D DW+P DLQA+DRAHRIGQK+ VNV++L+T+ T+EE+
Sbjct: 1151 ISTRAGGLGINLTAANHVIMYDEDWNPFIDLQAIDRAHRIGQKREVNVWKLMTEWTVEER 1210
Query: 200 IMNLQKFKLLTANTVINSEN 219
+ ++ KL V+ +++
Sbjct: 1211 MAFRREQKLKLDKLVVQTQD 1230
Score = 49 (22.3 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 5 LQSVCNHPK-LVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALK 47
++ +C HPK +V PS Q E L + DI+ K ALK
Sbjct: 664 MRIICGHPKGIVSRPS--QMEKLFAFFEEESEDIKEQVKNDALK 705
Score = 37 (18.1 bits), Expect = 6.2e-19, Sum P(3) = 6.2e-19
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 208 LLTANTVINSENRNLDTMATGKILDLFCLD 237
LL +N I + N+N LD+F +D
Sbjct: 2450 LLKSNEQIENMNKNSGYSINDFNLDIFNID 2479
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 221 (82.9 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 493 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SRPDSDRFVF 548
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 549 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 608
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 609 EMFDKASLKLGLDKAVLQS 627
Score = 48 (22.0 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 434 LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVL 480
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 238 (88.8 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 59/153 (38%), Positives = 77/153 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ + + G +Y R+DGSV RH + F P I V
Sbjct: 364 HRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLL 419
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIFVD D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 420 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 479
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL N +I + L DL
Sbjct: 480 YRKAASKLQLTNMIIEGGHFTLGAQKPAADADL 512
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 238 (88.8 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 58/153 (37%), Positives = 76/153 (49%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ + + G +Y R+DGSV RH + F P V
Sbjct: 365 HRVLLFSQMTQMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGQQPVF-VFLL 420
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIFVD D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 421 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 480
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL N +I + L DL
Sbjct: 481 YRKAASKLQLTNAIIEGGHFTLGAQKPAADADL 513
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 238 (88.8 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 60/153 (39%), Positives = 77/153 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ + + G +Y R+DGSV RH + F P I V
Sbjct: 358 HRVLLFSQMTHMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGKQP-IFVFLL 413
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIFVD D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 414 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 473
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL N VI + L DL
Sbjct: 474 YRKAASKLQLTNMVIEGGHFTLGAQKPAAEADL 506
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 232 (86.7 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 973 HRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1029
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1030 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1089
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1090 ITQVAKRKMMLTHLVV 1105
Score = 39 (18.8 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA V G S ++ + KL L+++L
Sbjct: 921 LKKCCNHPYLF--PV-AAVEAPVLPNGSYDGNSLVKSSGKLMLLQKML 965
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 242 (90.2 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 60/152 (39%), Positives = 81/152 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
++ L+F Q MLDI+E +F + +++RLDGS R IVTKFN+D +I +
Sbjct: 1785 NKCLLFTQFIKMLDILE--IFLNHL-NYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFIS 1841
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
A+ VIF D DW+P D QAMDR HRIGQ K V+V+R + + T+EE I
Sbjct: 1842 STRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENI 1901
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILD 232
Q K N IN N N ++ KI D
Sbjct: 1902 WKKQLQKRKLDNICINMGNFN-NSNTHSKITD 1932
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 242 (90.2 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 60/152 (39%), Positives = 81/152 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
++ L+F Q MLDI+E +F + +++RLDGS R IVTKFN+D +I +
Sbjct: 1785 NKCLLFTQFIKMLDILE--IFLNHL-NYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFIS 1841
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
A+ VIF D DW+P D QAMDR HRIGQ K V+V+R + + T+EE I
Sbjct: 1842 STRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENI 1901
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILD 232
Q K N IN N N ++ KI D
Sbjct: 1902 WKKQLQKRKLDNICINMGNFN-NSNTHSKITD 1932
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 218 (81.8 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 61/155 (39%), Positives = 78/155 (50%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAI-VTKFN--SDPTID-- 136
R LIF Q+ +LDI+E+ C G Y RLDG R + + K N S I+
Sbjct: 484 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAF 540
Query: 137 --------VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188
+ AD VI D DW+P DLQAMDRAHRIGQKK V V+
Sbjct: 541 NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 600
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
RLIT NT+EE+I+ + KL + VI + R +D
Sbjct: 601 RLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLID 634
Score = 47 (21.6 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 433 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 466
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 233 (87.1 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1116
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1117 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1176
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1177 ITQVAKKKMMLTHLVV 1192
Score = 38 (18.4 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1008 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1052
Score = 36 (17.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 490 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 528
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 233 (87.1 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1124 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1183
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1184 ITQVAKKKMMLTHLVV 1199
Score = 38 (18.4 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1015 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1059
Score = 36 (17.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 497 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 535
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 233 (87.1 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1124 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1183
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1184 ITQVAKKKMMLTHLVV 1199
Score = 38 (18.4 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1015 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1059
Score = 36 (17.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 497 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 535
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 233 (87.1 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1124 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1183
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1184 ITQVAKKKMMLTHLVV 1199
Score = 38 (18.4 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1015 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1059
Score = 36 (17.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 497 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 535
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 233 (87.1 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1116
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1117 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1176
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1177 ITQVAKKKMMLTHLVV 1192
Score = 38 (18.4 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1008 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1052
Score = 36 (17.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 490 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 528
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 233 (87.1 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1116
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1117 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1176
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1177 ITQVAKKKMMLTHLVV 1192
Score = 38 (18.4 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1008 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1052
Score = 36 (17.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 490 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 528
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 237 (88.5 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 59/153 (38%), Positives = 76/153 (49%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ L + G +Y R+DGSV RH + F P I
Sbjct: 366 HRVLLFSQMTQMLDILQDYL---DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLL 421
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 422 STRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 481
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL NT+I + L DL
Sbjct: 482 YRKAASKLQLTNTIIEGGHFTLGAQKPAADADL 514
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 233 (87.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1087 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1143
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1144 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1203
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1204 ITQVAKKKMMLTHLVV 1219
Score = 38 (18.4 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1035 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1079
Score = 36 (17.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 517 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 555
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 237 (88.5 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 57/135 (42%), Positives = 74/135 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ + + G +Y R+DGSV RH + F + P I V
Sbjct: 358 HRVLLFSQMTHMLDILQDYM---DYRGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLL 413
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIFVD D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 414 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 473
Query: 201 MNLQKFKLLTANTVI 215
KL N VI
Sbjct: 474 YRKAASKLQLTNMVI 488
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 233 (87.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1089 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1145
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1146 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1205
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1206 ITQVAKKKMMLTHLVV 1221
Score = 38 (18.4 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1037 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1081
Score = 36 (17.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 519 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 557
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 233 (87.1 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 50/136 (36%), Positives = 72/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L E G Y R+DG + R + +FN+
Sbjct: 1088 HRVLIFSQMTKMLDLLEDFL---EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1144
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ K V +YR +T+ ++EE+
Sbjct: 1145 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1204
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1205 ITQVAKKKMMLTHLVV 1220
Score = 38 (18.4 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGL--NLSDIRHAAKLPALKQLL 50
L+ CNHP L P A EA G+ + IR + KL L+++L
Sbjct: 1036 LKKCCNHPYLF--PVAAM-EAPKMPNGMYDGSALIRASGKLLLLQKML 1080
Score = 36 (17.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 40 AAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
A K K L+ G SP P DP P P L
Sbjct: 518 ALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 556
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 225 (84.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 58/148 (39%), Positives = 74/148 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKF-NSDPTIDVXX 139
H+ LIF Q+ L+I+E+ L E TY RLDGS+ S R A + +F + V
Sbjct: 1227 HQVLIFSQMVESLNILEDYLQYREY---TYERLDGSIKSEVRQASIDRFQDKGANRFVFL 1283
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQA R HRIGQ V VYRLIT+NT EE
Sbjct: 1284 LSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEY 1343
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMAT 227
+ KLL + V+++ T T
Sbjct: 1344 LFECATKKLLLDHIVLSTNKDKKQTNTT 1371
Score = 50 (22.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 5 LQSVCNHPKLVLGPSHA--QYEALVSRPGLNLSDIRHAAKLPALKQLL 50
++ VCNHP L+ G + + E + L ++ ++KL + +LL
Sbjct: 1172 IRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLL 1219
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 239 (89.2 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 55/137 (40%), Positives = 77/137 (56%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
HR LIF Q+ MLDI+ + L + G + RLDG+V + R + FN+ + D V
Sbjct: 707 HRVLIFSQMVRMLDILGDYL---SLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFL 763
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM RAHRIGQK V VYRL++K+T+EE
Sbjct: 764 LSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEED 823
Query: 200 IMNLQKFKLLTANTVIN 216
++ + K++ +I+
Sbjct: 824 VLERARRKMILEYAIIS 840
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 222 (83.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 57/149 (38%), Positives = 72/149 (48%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 715 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 770
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 771 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 830
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENR 220
T+N+ E ++ + KL V+ NR
Sbjct: 831 TRNSYEREMFDKASLKLGLDKAVLQDINR 859
Score = 44 (20.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E D + A + A +L++
Sbjct: 663 LRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVL 709
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 230 (86.0 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 63/176 (35%), Positives = 89/176 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LI+ Q + MLD++E+ C Y R+DG V R + +FN+ +
Sbjct: 612 HRVLIYTQFQHMLDLLED---YCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFL 668
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM RAHR+GQ V +YRLI + T+EE+
Sbjct: 669 LSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEER 728
Query: 200 IMNLQKFKLLTANTVIN---SENRN---LDTMATGKILDLFCLDGQDSRQEAGSSG 249
+M L K K++ + V+ ++N N LD + +LF +D EAG SG
Sbjct: 729 MMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFA--SEDD--EAGKSG 780
Score = 36 (17.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 246 GSSGTNPG 253
GS G+NPG
Sbjct: 1128 GSGGSNPG 1135
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 222 (83.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 53/144 (36%), Positives = 74/144 (51%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXXX 140
R LIF Q+ +LDI+E+ C Y R+DGS R + ++N+ D +
Sbjct: 471 RVLIFSQMSRVLDILED---YCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLL 527
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+R +T+ +EEK+
Sbjct: 528 TTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKV 587
Query: 201 MNLQKFKLLTANTVINSENRNLDT 224
+ KL VI + R +++
Sbjct: 588 LERAAQKLRLDQLVIQ-QGRQMNS 610
Score = 41 (19.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 5 LQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L+ CNHP L GP + E LV G
Sbjct: 423 LRKCCNHPYLFDGAEPGPPYTTDEHLVYNSG 453
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 222 (83.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 53/144 (36%), Positives = 74/144 (51%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXXX 140
R LIF Q+ +LDI+E+ C Y R+DGS R + ++N+ D +
Sbjct: 471 RVLIFSQMSRVLDILED---YCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLL 527
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQKK V V+R +T+ +EEK+
Sbjct: 528 TTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKV 587
Query: 201 MNLQKFKLLTANTVINSENRNLDT 224
+ KL VI + R +++
Sbjct: 588 LERAAQKLRLDQLVIQ-QGRQMNS 610
Score = 41 (19.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 5 LQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L+ CNHP L GP + E LV G
Sbjct: 423 LRKCCNHPYLFDGAEPGPPYTTDEHLVYNSG 453
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 216 (81.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 59/155 (38%), Positives = 77/155 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS------------VVSTARHAIVTKF 129
R LIF Q+ +LDI+E+ C G Y RLDG + R + F
Sbjct: 507 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAF 563
Query: 130 N-SDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188
N + + + AD VI D DW+P DLQAMDRAHRIGQKK V V+
Sbjct: 564 NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 623
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
RLIT NT+EE+I+ + KL + VI + R +D
Sbjct: 624 RLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLID 657
Score = 47 (21.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 456 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 489
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 215 (80.7 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 59/155 (38%), Positives = 76/155 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARH------------AIVTKF 129
R LIF Q+ +LDI+E+ C G Y RLDG R + F
Sbjct: 483 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAF 539
Query: 130 NSDPTID-VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188
N+ + + AD VI D DW+P DLQAMDRAHRIGQKK V V+
Sbjct: 540 NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 599
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
RLIT NT+EE+I+ + KL + VI + R +D
Sbjct: 600 RLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLID 633
Score = 47 (21.6 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 432 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 465
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 215 (80.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 59/155 (38%), Positives = 76/155 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARH------------AIVTKF 129
R LIF Q+ +LDI+E+ C G Y RLDG R + F
Sbjct: 504 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAF 560
Query: 130 NSDPTID-VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188
N+ + + AD VI D DW+P DLQAMDRAHRIGQKK V V+
Sbjct: 561 NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 620
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
RLIT NT+EE+I+ + KL + VI + R +D
Sbjct: 621 RLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLID 654
Score = 47 (21.6 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 453 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 486
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 225 (84.3 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1033 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1089
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1090 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1149
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1150 ITQVAKRKMMLTHLVV 1165
Score = 43 (20.2 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 69 DPGAPPPSIL 78
DP APPP +L
Sbjct: 489 DPDAPPPRVL 498
Score = 36 (17.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 981 LKKCCNHPYL 990
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 234 (87.4 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 58/153 (37%), Positives = 75/153 (49%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ MLDI+++ L + G +Y R+DGSV RH + F P
Sbjct: 366 HRVLLFSQMTQMLDILQDYL---DYRGYSYERVDGSVRGEERHLAIKNFGQQPIF--TFL 420
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D D++P DLQA RAHRIGQ K V V RLI ++T+EE +
Sbjct: 421 STRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 480
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGKILDL 233
KL NT+I + L DL
Sbjct: 481 YRKAASKLQLTNTIIEGGHFTLGAQKPAADADL 513
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 235 (87.8 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 60/162 (37%), Positives = 82/162 (50%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R L+F Q ML I+ K E G T +DG S R +V FN D+
Sbjct: 915 RILLFSQFTGMLGIIRQ---KLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGEN-DIFLIS 970
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
ADTVI D W+P + QA RAHRIGQK+VV V+R+ITK T+EE+I
Sbjct: 971 LKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIF 1030
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD-GQDSR 242
+LQK K + +I + L ++T +I + LD G+D +
Sbjct: 1031 DLQKKKQALVDELIQPGEQMLGKLSTEEIKQILQLDNGRDDK 1072
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 225 (84.3 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1128 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1184
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1185 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1244
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1245 ITQVAKRKMMLTHLVV 1260
Score = 43 (20.2 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 69 DPGAPPPSIL 78
DP APPP +L
Sbjct: 584 DPDAPPPRVL 593
Score = 36 (17.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1076 LKKCCNHPYL 1085
Score = 36 (17.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 60 GMSGSGPHYDPGAP---PPS 76
G+ G GP +D G PPS
Sbjct: 45 GVLGRGPGHDRGRDRHSPPS 64
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 221 (82.9 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 545 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SRPDSDRFVF 600
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 601 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 660
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 661 EMFDKASLKLGLDKAVLQS 679
Score = 48 (22.0 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 486 LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVL 532
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 225 (84.3 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1128 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1184
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1185 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1244
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1245 ITQVAKRKMMLTHLVV 1260
Score = 43 (20.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 69 DPGAPPPSIL 78
DP APPP +L
Sbjct: 584 DPDAPPPRVL 593
Score = 36 (17.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1076 LKKCCNHPYL 1085
Score = 36 (17.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 60 GMSGSGPHYDPGAP---PPS 76
G+ G GP +D G PPS
Sbjct: 45 GVLGRGPGHDRGRDRHSPPS 64
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 233 (87.1 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 54/135 (40%), Positives = 73/135 (54%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXX 140
HR L+F Q+ +LDI+++ + + G +Y RLDGSV RH + F P I V
Sbjct: 364 HRVLLFSQMTKLLDILQDYM---DYRGYSYERLDGSVRGEERHLAIKNFGQQP-IFVFLL 419
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
ADTVIF D D++P DLQA+ RAHRIGQ K V + RLI ++T+EE I
Sbjct: 420 STRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEII 479
Query: 201 MNLQKFKLLTANTVI 215
KL N ++
Sbjct: 480 YRRAASKLRLTNAIV 494
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 219 (82.2 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 51/131 (38%), Positives = 73/131 (55%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDV 137
++HR LIF Q+ +++++E + F + T+LRLDGS R +V ++N D +
Sbjct: 953 SKHRVLIFTQMTEVINLME-EYFS--LKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWI 1009
Query: 138 XXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
ADTVI D DW+P DLQA DR HRIGQ V+V+RLI+ N++E
Sbjct: 1010 FVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIE 1069
Query: 198 EKIMNLQKFKL 208
EKI+ KL
Sbjct: 1070 EKILGRATDKL 1080
Score = 46 (21.3 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 2 LRYLQSVCNHPKL 14
++ LQ +CNHP L
Sbjct: 910 VKQLQKICNHPYL 922
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 222 (83.2 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 57/155 (36%), Positives = 80/155 (51%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXX 139
HR L+F Q+ ++DI+E+ L M + Y+RLDGS + R ++ FN+ D
Sbjct: 808 HRVLMFFQMTQVMDIMEDFL---RMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFL 864
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P +DLQA DRAHRIGQK V + RLIT +++EE
Sbjct: 865 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEV 924
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
I+ KL VI + D +T + + F
Sbjct: 925 ILERAMQKLDIDGKVIQAGK--FDNKSTAEEQEAF 957
Score = 41 (19.5 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDI--RHAAKLPALKQLL 50
L+ +CNHP V + E +V+ P SD+ R A K L ++L
Sbjct: 759 LRKICNHP-FVFD----EVEGVVN-PSRGNSDLLFRVAGKFELLDRVL 800
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 213 (80.0 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 59/155 (38%), Positives = 76/155 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARH------------AIVTKF 129
R LIF Q+ +LDI+E+ C G Y RLDG R + F
Sbjct: 507 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAF 563
Query: 130 N-SDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188
N + + + AD VI D DW+P DLQAMDRAHRIGQKK V V+
Sbjct: 564 NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 623
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
RLIT NT+EE+I+ + KL + VI + R +D
Sbjct: 624 RLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLID 657
Score = 47 (21.6 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 456 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 489
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 213 (80.0 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 59/155 (38%), Positives = 76/155 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARH------------AIVTKF 129
R LIF Q+ +LDI+E+ C G Y RLDG R + F
Sbjct: 507 RVLIFSQMTRLLDILED---YCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAF 563
Query: 130 N-SDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVY 188
N + + + AD VI D DW+P DLQAMDRAHRIGQKK V V+
Sbjct: 564 NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 623
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNLD 223
RLIT NT+EE+I+ + KL + VI + R +D
Sbjct: 624 RLITDNTVEERIVERAEIKLRLDSIVIQ-QGRLID 657
Score = 47 (21.6 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 2 LRYLQSVCNHPKLV----LGPSHAQYEALVSRPG 31
L L+ CNHP L GP + E +VS G
Sbjct: 456 LMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSG 489
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 222 (83.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1296 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1351
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1352 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1411
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1412 EMFDKASLKLGLDKAVLQS 1430
Score = 48 (22.0 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 1237 LRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVL 1283
Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 6 QSVCNHPKLVLGPSHAQYEALVSRP---GLNLSDIRHAAKLPALKQLLMDCGIGASPG-M 61
QSV +P V PS++ ++ +P +L+ + P+ Q G ASP M
Sbjct: 335 QSVPRYPNAVGFPSNSGQGLMLQQPIHSSGSLNQMNTQTMHPSQPQ-----GTYASPPPM 389
Query: 62 SGSGPHYDP-GAPPPSI 77
S +P G PPP +
Sbjct: 390 SPMKAMSNPAGTPPPQV 406
Score = 40 (19.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 55 IGASPGMSGSGPHYDPGAPP-PSI 77
+G++PG + PH PP P +
Sbjct: 89 MGSAPGNGLASPHSQYHTPPVPQV 112
Score = 39 (18.8 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 12 PKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGP---HY 68
P + L + A E L+ PG +H + P +QL + PG+ S P H+
Sbjct: 474 PGVGLADAQAIQERLI--PGQ-----QHPGQQPPFQQLPTCPPLQPHPGLHQSSPPHPHH 526
Query: 69 DPGA 72
P A
Sbjct: 527 QPWA 530
Score = 37 (18.1 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 44 PALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSIL 78
P + MD +G+ P M PH P PP +
Sbjct: 408 PGSAGIPMD--VGSYPNM----PHPQPSHQPPGAM 436
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 222 (83.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1306 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1361
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1362 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1421
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1422 EMFDKASLKLGLDKAVLQS 1440
Score = 48 (22.0 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 1247 LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVL 1293
Score = 36 (17.7 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 55 IGASPGMSGSGPHYDPGAPPPSIL 78
+G+ P M PH P PP +
Sbjct: 423 VGSYPNM----PHPQPSHQPPGAM 442
Score = 36 (17.7 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 10 NHPKLVLGPSHAQYEALVSRPGLNLSDI 37
N P+ V P H+ E + +P +++ +
Sbjct: 545 NTPQKVPVPQHSPSEPFLEKPVPDMTQV 572
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 223 (83.6 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 58/153 (37%), Positives = 73/153 (47%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 792 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 847
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 848 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 907
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENRNLDT 224
T+N+ E ++ + KL V+ NR T
Sbjct: 908 TRNSYEREMFDKASLKLGLDKAVLQDINRKGST 940
Score = 46 (21.3 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 740 LRKCCNHPYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVL 786
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 222 (83.2 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 57/149 (38%), Positives = 72/149 (48%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 590 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 645
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 646 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 705
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENR 220
T+N+ E ++ + KL V+ NR
Sbjct: 706 TRNSYEREMFDKASLKLGLDKAVLQDINR 734
Score = 44 (20.5 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E D + A + A +L++
Sbjct: 538 LRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVL 584
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 222 (83.2 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 57/149 (38%), Positives = 72/149 (48%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 590 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 645
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 646 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 705
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENR 220
T+N+ E ++ + KL V+ NR
Sbjct: 706 TRNSYEREMFDKASLKLGLDKAVLQDINR 734
Score = 44 (20.5 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E D + A + A +L++
Sbjct: 538 LRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVL 584
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 217 (81.4 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 52/149 (34%), Positives = 74/149 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXXX 140
R LIF Q+ +LDI+E+ L G Y R+DG+ R A + +N + V
Sbjct: 513 RVLIFSQMTRLLDILEDYLM---YRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLL 569
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQA DRAHRIGQKK V V+R T+N +E K+
Sbjct: 570 STRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKV 629
Query: 201 MNLQKFKLLTANTVINSENRNLDTMATGK 229
+ + +K L + ++ + R + K
Sbjct: 630 IE-RAYKKLALDALVIQQGRLAEQKTVNK 657
Score = 42 (19.8 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 5 LQSVCNHPKLVLG----PSHAQYEALVSRPG 31
L+ CNHP L G P + + LV+ G
Sbjct: 465 LRKCCNHPYLFQGAEPGPPYTTGDHLVTNAG 495
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 227 (85.0 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 53/138 (38%), Positives = 72/138 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
H+ LIF Q+ +LD++E L P + R+DG+V R A + +F+ + + V
Sbjct: 1538 HKVLIFSQMVKVLDLLEEFLISMSYP---FERIDGNVRGDLRQAAIDRFSKENSDRFVFL 1594
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQA R HRIGQKK+V VYRLIT NT E +
Sbjct: 1595 LCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYERE 1654
Query: 200 IMNLQKFKLLTANTVINS 217
+ + KL V+ S
Sbjct: 1655 MFDKASLKLGLDKAVLQS 1672
Score = 42 (19.8 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 56 GASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRA 91
G PG +GP PPP Q+ ++ Q RA
Sbjct: 156 GYRPGPVTNGPPPQGQYPPPPQAPQNYQQMYHQQRA 191
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 56 GASPGMSGSGPHYDPGAPPPSILTQH 81
G P S P+ PPP + Q+
Sbjct: 219 GYPPPPSQQSPYAPQAGPPPQMRHQY 244
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 51 MDCGIGASPGMSGSGPHYDPGAPPP 75
MD G P MS + G PPP
Sbjct: 1 MDEGDDYVPQMSQMADYTMMGGPPP 25
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 18 PSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPH-YDP----GA 72
P QY P N + H + A +Q G + G G GP+ Y P G
Sbjct: 167 PPQGQYPPPPQAPQ-NYQQMYHQQR--AQQQ---QAGQQQAQGPPGYGPYGYAPQASTGY 220
Query: 73 PPP 75
PPP
Sbjct: 221 PPP 223
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 221 (82.9 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1308 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SRPDSDRFVF 1363
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1364 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1423
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1424 EMFDKASLKLGLDKAVLQS 1442
Score = 48 (22.0 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 1249 LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVL 1295
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 223 (83.6 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 58/153 (37%), Positives = 73/153 (47%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 793 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 848
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENRNLDT 224
T+N+ E ++ + KL V+ NR T
Sbjct: 909 TRNSYEREMFDKASLKLGLDKAVLQDINRKGST 941
Score = 45 (20.9 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVL 787
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 223 (83.6 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 58/153 (37%), Positives = 73/153 (47%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 793 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 848
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENRNLDT 224
T+N+ E ++ + KL V+ NR T
Sbjct: 909 TRNSYEREMFDKASLKLGLDKAVLQDINRKGST 941
Score = 45 (20.9 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVL 787
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 214 (80.4 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 54/139 (38%), Positives = 69/139 (49%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
H+ LIF Q+ LDI+E+ L + Y R+DG V R A + +F S P D V
Sbjct: 376 HKVLIFSQMVRCLDILEDYLIQRRY---LYERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 431
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V VYRLIT+N+ E
Sbjct: 432 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 491
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 492 EMFDKASLKLGLDKAVLQS 510
Score = 42 (19.8 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ CNHP L+ G
Sbjct: 317 LRKCCNHPYLING 329
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 222 (83.2 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 57/149 (38%), Positives = 72/149 (48%)
Query: 74 PPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P I H+ LIF Q+ LDI+E+ L + TY R+DG V R A + +F P
Sbjct: 793 PKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRF-CKP 848
Query: 134 TID--VXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLI 191
D V ADT I D DW+P DLQA R HRIGQ K V VYRLI
Sbjct: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
Query: 192 TKNTLEEKIMNLQKFKLLTANTVINSENR 220
T+N+ E ++ + KL V+ NR
Sbjct: 909 TRNSYEREMFDKASLKLGLDKAVLQDINR 937
Score = 45 (20.9 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVL 787
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 217 (81.4 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 54/146 (36%), Positives = 73/146 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
H+ LIF Q+ LDI+E+ L Y R+DG V R A + +F S P D V
Sbjct: 1187 HKVLIFSQMVRCLDILEDYLIHKRY---LYERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1242
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT + D DW+P DLQA R HRIGQ K V VYRLIT+N+ E
Sbjct: 1243 LLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 1302
Query: 199 KIMNLQKFKLLTANTVINSENRNLDT 224
++++ KL V+ S + N ++
Sbjct: 1303 EMLDKASLKLGLDRAVLQSMSGNKES 1328
Score = 49 (22.3 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVS-----RPGLNLSD-IRHAAKLPALKQLL 50
L+ CNHP L+ G L P +L +R A KL L +LL
Sbjct: 1128 LRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLDKLL 1179
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 221 (82.9 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 55/139 (39%), Positives = 70/139 (50%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1359 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SRPDSDRFVF 1414
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1415 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYER 1474
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 1475 EMFDKASLKLGLDKAVLQS 1493
Score = 47 (21.6 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 5 LQSVCNHPKLVLGPSHAQYEAL-----VSRPGLNLSD-IRHAAKLPALKQLL 50
L+ CNHP L+ G E + +P +L I+ A KL + +LL
Sbjct: 1300 LRKCCNHPYLINGAEEKIMEEFRETHPLDQPEFHLQAMIQAAGKLVLIDKLL 1351
Score = 40 (19.1 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 57 ASPGMSGSGPHYDP 70
A PG + G H+DP
Sbjct: 61 AVPGQAKLGHHFDP 74
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 228 (85.3 bits), Expect = 8.5e-18, P = 8.5e-18
Identities = 49/128 (38%), Positives = 70/128 (54%)
Query: 75 PSILTQ-HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
P +L + H+ LIF Q + LDI+++ + + R+DG++ R A + FN+D
Sbjct: 636 PCLLNKGHKILIFSQFKTQLDILQD--WATHLRSWNCCRIDGAISQADRQAQIKAFNTDK 693
Query: 134 TIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
+ ADTVI D DW+P +DLQA DRAHRIGQ K V VYRL TK
Sbjct: 694 DYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATK 753
Query: 194 NTLEEKIM 201
T+E+ ++
Sbjct: 754 GTVEQTLL 761
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 228 (85.3 bits), Expect = 9.7e-18, P = 9.7e-18
Identities = 54/158 (34%), Positives = 84/158 (53%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
R LIF Q +LDI+E L ++ +LRLDGS R ++ F+++ V
Sbjct: 782 RILIFSQFTQVLDILEYVLNTLDLE---FLRLDGSTPVETRQQLIDDFHTNENYKVFLLS 838
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ VI D ++P D+QA DRAHR+GQ + V+VYRLITKNT+EE I
Sbjct: 839 TKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIR 898
Query: 202 NLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ 239
L KL T + + +++ + +G+++ +DG+
Sbjct: 899 RLANTKL-TLESSLTTDSEKIQKEISGELMKSLQMDGR 935
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 215 (80.7 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 53/135 (39%), Positives = 67/135 (49%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXXX 140
R LIF Q+ +LDI+E+ C Y R+DG R A + ++N + V
Sbjct: 508 RVLIFSQMSRVLDILED---YCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLL 564
Query: 141 XXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
AD VI D DW+P DLQAMDRAHRIGQ K V VYR + NT+EEK+
Sbjct: 565 TTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKV 624
Query: 201 MNLQKFKLLTANTVI 215
+ KL VI
Sbjct: 625 LERAAQKLHLDRLVI 639
Score = 41 (19.5 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 5 LQSVCNHPKLVLG----PSHAQYEALVSRPG 31
L+ CNHP L G P + E LV G
Sbjct: 460 LRKCCNHPYLFEGAEPGPPYTTDEHLVYNSG 490
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 200 (75.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 48/142 (33%), Positives = 73/142 (51%)
Query: 99 DLFK--CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXXXXXXXXXXXXXXXXAD 155
DLF+ C + Y+RLDG++ R +V +FNS + D V A+
Sbjct: 527 DLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGAN 586
Query: 156 TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVI 215
++ D DW+P D QAM R R GQKK+ +YRL++ T+EEKI Q K ++ V+
Sbjct: 587 RLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVV 646
Query: 216 NSENRNLDTMATGKILDLFCLD 237
+ E + G++ +LF LD
Sbjct: 647 DEEQDVERHFSLGELKELFTLD 668
Score = 51 (23.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPAL--KQLLMD 52
S+ L+ +CNHP L+ A+ + G+ A P L K L++D
Sbjct: 449 SITSLKKLCNHPALIYDKCVAEEDGFEGTLGIFPPGYNSKAVEPQLSGKMLVLD 502
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 218 (81.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 61/187 (32%), Positives = 91/187 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LI+ Q + L ++E D F + Y R+DG + R + +FN++ +
Sbjct: 541 HRVLIYTQFQHTLYLLE-DYFTFK--NWNYERIDGKISGPERQVRIDRFNAENSNRFCFL 597
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P DLQAM R HR+GQ V +YRLI K T+EE+
Sbjct: 598 LSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEER 657
Query: 200 IMNLQKFKLLTANTVINSENR---NLDTMATGKILDLFCLDGQDSRQEAGSSGT---NPG 253
+M + K K+L + V+ ++ LD + +LF + EAG SG +
Sbjct: 658 MMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGSKELF----SEENDEAGRSGKIHYDDA 713
Query: 254 GLKGLLD 260
++ LLD
Sbjct: 714 AIEQLLD 720
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 2 LRYLQSVCNHPKLV 15
L L+ VC+HP L+
Sbjct: 489 LMKLRQVCSHPYLL 502
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 225 (84.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1073 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFL 1129
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1130 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1189
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1190 ITQVAKRKMMLTHLVV 1205
Score = 36 (17.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1021 LKKCCNHPYL 1030
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 225 (84.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1075 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1131
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1132 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1191
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1192 ITQVAKRKMMLTHLVV 1207
Score = 36 (17.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1023 LKKCCNHPYL 1032
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 225 (84.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1077 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1194 ITQVAKRKMMLTHLVV 1209
Score = 36 (17.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1025 LKKCCNHPYL 1034
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 225 (84.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1077 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1194 ITQVAKRKMMLTHLVV 1209
Score = 36 (17.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1025 LKKCCNHPYL 1034
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 225 (84.3 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV-XX 139
HR LIF Q+ MLD++E+ L + G Y R+DG + R + +FN+
Sbjct: 1136 HRVLIFSQMTKMLDLLEDFL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1192
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P D+QA RAHRIGQ V +YR +T+ ++EE+
Sbjct: 1193 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1252
Query: 200 IMNLQKFKLLTANTVI 215
I + K K++ + V+
Sbjct: 1253 ITQVAKRKMMLTHLVV 1268
Score = 36 (17.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 5 LQSVCNHPKL 14
L+ CNHP L
Sbjct: 1084 LKKCCNHPYL 1093
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 206 (77.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 48/129 (37%), Positives = 69/129 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXX 139
HR L+F Q+ ++D++E L + YLRLDGS + R ++ +FN D +
Sbjct: 712 HRILLFSQMTRLIDLLEIYL---SLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFL 768
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADT+I D DW+P D QA DRAHRIGQKK V V+ L++ ++EE
Sbjct: 769 LSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEV 828
Query: 200 IMNLQKFKL 208
I+ K K+
Sbjct: 829 ILERAKQKM 837
Score = 48 (22.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLL 50
L+ CNHP L +G A Y + +P + +R + K L +LL
Sbjct: 667 LRKCCNHPYLFVG---ADYN-MCKKPEI----VRASGKFELLDRLL 704
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 218 (81.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 58/155 (37%), Positives = 80/155 (51%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVXX 139
HR L+F Q+ ++DI+E+ L +M YLRLDGS + R ++ FN+ D
Sbjct: 837 HRVLMFFQMTQIMDIMEDFLRWKDMK---YLRLDGSTKAEERQDMLKVFNAPDSDYFCFL 893
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
ADTVI D DW+P +DLQA DRAHRIGQK V + RLIT +++EE
Sbjct: 894 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEV 953
Query: 200 IMNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
I+ KL VI + D +T + + F
Sbjct: 954 ILERAHQKLDIDGKVIQAGK--FDNKSTAEEQEAF 986
Score = 38 (18.4 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 5 LQSVCNHP 12
L+ +CNHP
Sbjct: 788 LRKICNHP 795
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 211 (79.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 53/139 (38%), Positives = 68/139 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
H+ LIF Q+ LDI+E+ L Y R+DG V R A + +F S P D V
Sbjct: 725 HKVLIFSQMVRCLDILEDYLIHKRY---LYERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 780
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V VYRL+T+N+ E
Sbjct: 781 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYER 840
Query: 199 KIMNLQKFKLLTANTVINS 217
++ + KL V+ S
Sbjct: 841 EMFDRASLKLGLDKAVLQS 859
Score = 43 (20.2 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 5 LQSVCNHPKLVLG 17
L+ CNHP L+ G
Sbjct: 666 LRKCCNHPYLIKG 678
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 198 (74.8 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 45/134 (33%), Positives = 70/134 (52%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVXXXX 141
+ L+F MLDI+E L + G ++ RLDGS + R ++V FN+ P+ V
Sbjct: 546 KILLFSYSVRMLDILEKFLIR---KGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLIS 602
Query: 142 XXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIM 201
A+ V+ D +W+P DLQA DR+ R GQK+ V V+RL++ +LEE +
Sbjct: 603 TKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVY 662
Query: 202 NLQKFKLLTANTVI 215
Q +K +N +
Sbjct: 663 TRQVYKQQLSNIAV 676
Score = 53 (23.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 28 SRPGLNLSDIRHAAKLPALKQLL 50
S+ ++LSD++H K+ AL++L+
Sbjct: 515 SKSFMDLSDVKHCGKMRALEKLM 537
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 202 (76.2 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 53/141 (37%), Positives = 69/141 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
HR LIF Q+ LDI+E+ L + P Y R+DG V R A + +F S P D V
Sbjct: 1300 HRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRF-SKPDSDRFVF 1355
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSP--MKDLQAMDRAHRIGQKKVVNVYRLITKNTL 196
ADT I D DW+P + QA R HRIGQ K V +YRLIT+N+
Sbjct: 1356 LLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKIYRLITRNSY 1415
Query: 197 EEKIMNLQKFKLLTANTVINS 217
E ++ + KL V+ S
Sbjct: 1416 EREMFDKASLKLGLDKAVLQS 1436
Score = 48 (22.0 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLM 51
L+ CNHP L+ G E + D + A + A +L++
Sbjct: 1241 LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVL 1287
Score = 39 (18.8 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 239 QDSRQEAGSSGTNPGGLKGLLDTLP 263
+D EAG++ P G++ DT P
Sbjct: 2199 RDREAEAGAARNEPKGVEVGADTGP 2223
Score = 36 (17.7 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 10 NHPKLVLGPSHAQYEALVSRPGLNLSDI 37
N P+ V P H+ E + +P +++ +
Sbjct: 539 NTPQKVPVPQHSPSEPFLEKPVPDMTQV 566
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 213 (80.0 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 56/152 (36%), Positives = 74/152 (48%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID--VX 138
H+ LIF Q+ LDI+E+ L + Y R+DG V R A + +F S P D V
Sbjct: 1094 HKVLIFSQMVRCLDILEDYLIQRRY---LYERIDGRVRGNMRQAAIDRF-SRPDSDRFVF 1149
Query: 139 XXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEE 198
ADT I D DW+P DLQA R HRIGQ K V +YRLIT+N+ E
Sbjct: 1150 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYER 1209
Query: 199 KIMNLQKFKLLTANTVINSENRNLDTMATGKI 230
++ + KL V+ S + D +G I
Sbjct: 1210 EMFDKASLKLGLDKAVLQSMSGR-DNHLSGPI 1240
Score = 47 (21.6 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 5 LQSVCNHPKLVLGPSH---AQY-EAL-VSRPGLNLSD-IRHAAKLPALKQLL 50
L+ CNHP L+ G +++ EA V P ++ +R + KL + +LL
Sbjct: 1035 LRKCCNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLL 1086
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 215 (80.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 58/159 (36%), Positives = 85/159 (53%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTA-RHAIVTKFNSDPTIDVXX 139
HR L+F Q ML+ E L + G+TYLR+DGS+ ST R I+ +N+D +
Sbjct: 823 HRVLMFSQSVKMLEDFEILL---DHLGLTYLRIDGSISSTKKRQEIIDLYNTDMSYFAFI 879
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
AD V+ +D W+ + D QA+DRA+RIGQKK V VYRL++ T+EEK
Sbjct: 880 MTIQVGALGLNLTSADRVLILDPSWNTI-DNQAVDRAYRIGQKKDVVVYRLMSCGTIEEK 938
Query: 200 IMNLQKFKLLTANTVINSENRNLDT-MATGKILDLFCLD 237
I Q FK T++N+ ++ + ++F LD
Sbjct: 939 IYRKQVFKGSLMKTMLNNTMSGQHRYFSSNDLREMFTLD 977
Score = 40 (19.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1 SLRYLQSVCNHPKLV 15
+L L+ +C+HP L+
Sbjct: 758 ALTVLKKICDHPHLL 772
WARNING: HSPs involving 266 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 292 262 0.00091 114 3 11 22 0.48 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 516
No. of states in DFA: 604 (64 KB)
Total size of DFA: 185 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.64u 0.08s 22.72t Elapsed: 00:00:02
Total cpu time: 22.69u 0.09s 22.78t Elapsed: 00:00:02
Start: Thu Aug 15 11:04:59 2013 End: Thu Aug 15 11:05:01 2013
WARNINGS ISSUED: 2