RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15261
(292 letters)
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 207 bits (529), Expect = 1e-62
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 37/243 (15%)
Query: 5 LQSVCNHPKLVLGPSHAQ---YEALVSRPGLNLSD----IRHAAKLPALKQLLMDCGIGA 57
L+ +CNHP L+ ++ + N S + + K+ L +L
Sbjct: 356 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYIL------- 408
Query: 58 SPGMSGSGPHYDPGAPPPSILTQ--HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115
T + ++ LD+ E L C Y+RLDG
Sbjct: 409 -----------------AMTRTTTSDKVVLVSNYTQTLDLFE-KL--CRNRRYLYVRLDG 448
Query: 116 SVVSTARHAIVTKFNSDPTID-VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMD 174
++ R IV +FN+ + + + +L+++ GG GLNL GA+ ++ D DW+P D QAM
Sbjct: 449 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 508
Query: 175 RAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
R R GQKK +YRL++ T+EEKI+ Q K ++ V++ E + G++ +LF
Sbjct: 509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELF 568
Query: 235 CLD 237
L+
Sbjct: 569 SLN 571
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 176 bits (449), Expect = 3e-54
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 40/230 (17%)
Query: 8 VCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPH 67
+ +HP L+ G + + K+ +++ +
Sbjct: 78 IVDHPALLKGGEQSVRRS---------------GKMIRTMEIIEEA-------------- 108
Query: 68 YDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVT 127
+ + IF Q M I+ N + K L G + R I++
Sbjct: 109 ---------LDEGDKIAIFTQFVDMGKIIRNIIEK--ELNTEVPFLYGELSKKERDDIIS 157
Query: 128 KFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187
KF ++P++ ++L+ + GG G+NLT A+ VI D W+P + QA DR +RIGQ + V V
Sbjct: 158 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217
Query: 188 YRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
++LI+ TLEEKI L FK +I+S + + ++T ++ + L
Sbjct: 218 HKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELS 267
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 176 bits (449), Expect = 6e-52
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 8 VCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPH 67
+ +HP L+ G + +R + K+ +++ +
Sbjct: 307 IVDHPALLKGGEQS---------------VRRSGKMIRTMEIIEEA-------------- 337
Query: 68 YDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVT 127
+ + IF Q M I+ N + K L G + R I++
Sbjct: 338 ---------LDEGDKIAIFTQFVDMGKIIRNIIEK--ELNTEVPFLYGELSKKERDDIIS 386
Query: 128 KFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNV 187
KF ++P++ ++L+ + GG G+NLT A+ VI D W+P + QA DR +RIGQ + V V
Sbjct: 387 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446
Query: 188 YRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
++LI+ TLEEKI L FK +I+S + + ++T ++ + L
Sbjct: 447 HKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELS 496
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 176 bits (447), Expect = 3e-50
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 31/230 (13%)
Query: 8 VCNHPKLVLGPSHAQYEAL----VSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSG 63
NHP L + ++R + I + K+ L QLL +
Sbjct: 519 ASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLL--------TRLKK 570
Query: 64 SGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARH 123
G HR LIF Q+ MLDI+ + + G+ + RLDG+V S R
Sbjct: 571 DG---------------HRVLIFSQMVRMLDILGD---YLSIKGINFQRLDGTVPSAQRR 612
Query: 124 AIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQK 182
+ FNS D V LL+T+ GGLG+NL ADTV+ D DW+P DLQAM RAHRIGQK
Sbjct: 613 ISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672
Query: 183 KVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILD 232
V VYRL++K+T+EE+++ + K++ +I+ + + +
Sbjct: 673 NHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPN 722
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain,
chromatin regulator, coiled coil, nucleus, repressor,
transcription; 2.20A {Saccharomyces cerevisiae} PDB:
3hgq_A
Length = 328
Score = 121 bits (305), Expect = 1e-32
Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 42/210 (20%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGS 64
V HP L L + + +L ++ K L+ L+
Sbjct: 76 GSLVATHPYL-LIDHYMPKSLITRDVPAHL--AENSGKFSVLRDLI-------------- 118
Query: 65 GPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHA 124
+ I C+ +D++E L V R DG + +A
Sbjct: 119 ---------NLVQEYETETAIVCRPGRTMDLLE-AL--LLGNKVHIKRYDGHSIKSAA-- 164
Query: 125 IVTKFNSDPTIDVLLLTTQ----VGGLGLNLTGADTVIFVDHDWSP-MKDLQAMDRAHRI 179
+D + V L +++ + D +I +D KD+Q + + R
Sbjct: 165 ----AANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRE 220
Query: 180 --GQKKVVNVYRLITKNTLEEKIMNLQKFK 207
G ++ + RL+ N+++ + K
Sbjct: 221 RKGLERYAPIVRLVAINSIDHCRLFFGKKF 250
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 125 bits (315), Expect = 2e-32
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 2/167 (1%)
Query: 78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDV 137
+ L+ C A +E L E G+ + R F + T
Sbjct: 501 HRSQKVLVICAKAATALQLEQVL--REREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQ 558
Query: 138 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE 197
+LL +++G G N A ++ D ++P Q + R RIGQ + ++ + T +
Sbjct: 559 VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQ 618
Query: 198 EKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQE 244
++ L + D++ I L D + +
Sbjct: 619 SVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDD 665
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 3e-12
Identities = 54/316 (17%), Positives = 103/316 (32%), Gaps = 79/316 (25%)
Query: 5 LQSVCNHPKLVLGPSHAQYEALVSR--------PGLNLSDIRHAAKL-PALKQLLMDCGI 55
+++ P ++ Y R N+S ++ KL AL +L +
Sbjct: 98 IKTEQRQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 56 GASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLF-----KCEMPGVT- 109
G+ GSG + + AL C + ++ +F C P
Sbjct: 154 LID-GVLGSG---------KTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 110 ------YLRLDGSVVSTARHAIVTKFNSDPTIDVL--LLTTQVGGLGLNLTGADTVIFVD 161
++D + S + H+ K L LL ++ L + +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LVLL 251
Query: 162 HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRN 221
+ + K A + + +I L+T T +++ + L A T S + +
Sbjct: 252 NVQNA-KAWNAFNLSCKI----------LLT--TRFKQVTD----FLSAATTTHISLDHH 294
Query: 222 LDTMATGKILDLF--CLDG--QDSRQEAGSSGTNP---GGLKGLLDTLPELWDEREYEEE 274
T+ ++ L LD QD +E TNP + + WD ++
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 275 YDLSNFVQS----LNP 286
L+ ++S L P
Sbjct: 353 DKLTTIIESSLNVLEP 368
Score = 36.8 bits (84), Expect = 0.008
Identities = 34/226 (15%), Positives = 71/226 (31%), Gaps = 73/226 (32%)
Query: 44 PA-LKQLLMDCGIGASPGMSGSGPHYDPGAP-PPSIL--------TQHRALIFCQL--RA 91
PA +++ + + P A P +L ++ +L +
Sbjct: 368 PAEYRKMFDRLSV------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 92 MLDIVENDLFKCEMPGVTYLRLDGSVVS-TARHA-IVTKFN----------SDPTIDVLL 139
+++ + +P + YL L + + A H IV +N P +D
Sbjct: 416 LVEK-QPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--- 470
Query: 140 LTTQVGG-----LGLNLTGAD--------TVIFVDHDWSPMKDLQAMDRAHRIGQKKVVN 186
+G +L + ++F+D + K ++ A ++N
Sbjct: 471 ------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTA-WNASGSILN 522
Query: 187 V------YR-LITKN--TLEEKIMNLQKFKLLTANT-VINSENRNL 222
Y+ I N E + + F L +I S+ +L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDL 567
Score = 36.0 bits (82), Expect = 0.013
Identities = 40/247 (16%), Positives = 70/247 (28%), Gaps = 64/247 (25%)
Query: 94 DIVEN--DLFKCEMPGVTYLRLDGSVVSTA--RHAIVTKFNSDPTIDVLLLTTQVGGLGL 149
DI+ D F + S++S H I+ ++ L T L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFWT-------L 71
Query: 150 NLTGADTV-IFV------DHDW--SPMKD------------LQAMDRAHRIGQK-KVVNV 187
+ V FV ++ + SP+K ++ DR + Q NV
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 188 YRLITKNTLEEKIMNLQKFKL-------------LTANTV---------------INSEN 219
RL L + ++ L+ K + + +N +N
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 220 RNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEY-DLS 278
N + L + + S + + L L + YE L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 279 NFVQSLN 285
N VQ+
Sbjct: 252 N-VQNAK 257
Score = 34.1 bits (77), Expect = 0.054
Identities = 32/261 (12%), Positives = 79/261 (30%), Gaps = 70/261 (26%)
Query: 74 PPSILT---QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFN 130
P +LT + ++I +R L +N + ++ ++T + +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN-----------WKHVNCDKLTTIIESSLNVLE 367
Query: 131 SD------------PTIDVLLLTTQVGGLGL---NLTGADTVIFVDH---------DWSP 166
P + T + L L ++ +D ++ V+
Sbjct: 368 PAEYRKMFDRLSVFPP-SAHI-PTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 167 MK----DLQAMDRAHRIGQ----KKVVNVYRLITKNTLEEKIMNLQK---FKLLTANTVI 215
+ + + + +V+ Y + ++ I + + + +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLK 482
Query: 216 NSENRNLDTMATGKILDL-FCLDGQDSRQEAGSSGTNPGGLKGLLDTLPELW-------- 266
N E+ T+ LD F Q+ T +L+TL +L
Sbjct: 483 NIEHPERMTLFRMVFLDFRFL------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 267 DEREYEE-EYDLSNFVQSLNP 286
++ +YE + +F+ +
Sbjct: 537 NDPKYERLVNAILDFLPKIEE 557
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 61.7 bits (149), Expect = 6e-11
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)
Query: 79 TQHRALIFCQLRAMLDIVENDL----FKCE-MPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
+ ++F R + N+L K + G D + + I+ +F
Sbjct: 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419
Query: 134 TIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
+L+ T VG GL++ D V+F + S ++ +Q R R +V+ L+ K
Sbjct: 420 F--NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVII---LMAK 474
Query: 194 NTLEEKIMNLQKFK 207
T +E + K
Sbjct: 475 GTRDEAYYWSSRQK 488
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 50.2 bits (120), Expect = 3e-07
Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139
+ + +IF + ++ + P +T R I+ F + ++
Sbjct: 349 KDKIIIFTRHNELVYRISKVFLI---PAIT-----HRTSREEREEILEGFRTGR-FRAIV 399
Query: 140 LTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQ-KKVVNVYRLITKNTLEE 198
++QV G+++ A+ + + S + +Q + R R + KK +Y LI++ T E
Sbjct: 400 -SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEV 458
Query: 199 KIM 201
Sbjct: 459 NTA 461
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 43.4 bits (101), Expect = 6e-05
Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCE---------MPGVTYLRLDGSVVSTARHAIVTKF 129
Q R L+F + RA++ ++ + + + G + ++ ++ F
Sbjct: 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689
Query: 130 NSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVV---- 185
+ +L+ T V G+++ + V+ ++ + K +Q R G K ++
Sbjct: 690 KTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 748
Query: 186 -NVYRLITKNTLEEKIMN 202
V N +E++MN
Sbjct: 749 TEVVENEKCNRYKEEMMN 766
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 43.0 bits (100), Expect = 9e-05
Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCE---------MPGVTYLRLDGSVVSTARHAIVTKF 129
Q R L+F + RA++ ++ + + + G + ++ ++ F
Sbjct: 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689
Query: 130 NSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVV---- 185
+ +L+ T V G+++ + V+ ++ + K +Q R G K ++
Sbjct: 690 KTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 748
Query: 186 -NVYRLITKNTLEEKIMN 202
V N +E++MN
Sbjct: 749 TEVVENEKCNRYKEEMMN 766
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 42.7 bits (99), Expect = 1e-04
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 125 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKV 184
I+ F + ++L+ T V G+++ + VI ++ + +K +Q R G K
Sbjct: 452 ILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF 510
Query: 185 VNVYRLITKNTLEEK 199
+ L + + EK
Sbjct: 511 L----LTSNAGVIEK 521
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 38.7 bits (89), Expect = 0.002
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
A + + + + DL K E V Y+ G V + R+ + T + I +++
Sbjct: 348 ENAFVMFKHVSHGKAIF-DLIKNEYDKVYYV--SGEVDTETRNIMKTLAENGKGI-IIVA 403
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQ-KKVVNVYRLITKNTLEEK 199
+ V G+++ V+ S + LQ + R R K + V+ LI ++ K
Sbjct: 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPK 463
Query: 200 IMNLQK 205
N +K
Sbjct: 464 SANTKK 469
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 38.4 bits (88), Expect = 0.002
Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 79 TQHRALIFCQLRAMLDIVENDLFKCE---------MPGVTYLRLDGSVVSTARHAIVTKF 129
Q R L+F + RA++ ++ + + + G + ++ ++ F
Sbjct: 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448
Query: 130 NSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVV---- 185
+ +L+ T V G+++ + V+ ++ + K +Q R G K ++
Sbjct: 449 KTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 507
Query: 186 -NVYRLITKNTLEEKIMN 202
V N +E++MN
Sbjct: 508 TEVVENEKCNRYKEEMMN 525
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 36.0 bits (82), Expect = 0.011
Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 77 ILTQHRALIFCQLRAMLDIVENDLFKCE-MPGVTYLRLDGSVVSTARHAIVTKFNSDPTI 135
+ + RAL+ + + + K + G + A+ ++ F +
Sbjct: 394 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDN 453
Query: 136 DVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNT 195
++L+ T V G+++ + VI ++ + +K +Q R + + + L +
Sbjct: 454 NILI-ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRG----RARDSKCFLLTSSAD 508
Query: 196 LEEK 199
+ EK
Sbjct: 509 VIEK 512
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.032
Identities = 57/331 (17%), Positives = 94/331 (28%), Gaps = 124/331 (37%)
Query: 4 YLQSV---CNHPKLVLGPSHAQYEALVSRPGLNLSDIR--------HAAKLP-------- 44
YL S+ C P + + A Y G ++R H+ L
Sbjct: 230 YLLSIPISC--PLIGVI-QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 45 ------------ALKQLLMDCGIGA-----------SPGMSGSGPHYDPGAPPP--SILT 79
A+ L IG P + + G P P SI
Sbjct: 287 DSWESFFVSVRKAITVLF---FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-- 341
Query: 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139
L Q++ ++ + L P + + S+V+ A++ +V+ P
Sbjct: 342 --SNLTQEQVQDYVNKTNSHL-----PAGKQVEI--SLVNGAKNLVVS----GPPQS--- 385
Query: 140 LTTQVGGLGLNL------TGADTVIFVDHDWSPMKDLQAMDRAHRI--GQKKVVNVYR-L 190
L GL L L +G D Q RI ++K+ R L
Sbjct: 386 LY----GLNLTLRKAKAPSGLD---------------Q-----SRIPFSERKLKFSNRFL 421
Query: 191 -IT--------KNTLEEKIMNLQKFKL-LTAN----TVINSEN----RNLDTMATGKILD 232
+ + +L K + A V ++ + R L + +I+D
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 233 LFCLDGQDSRQEAGSSGTN-----PGGLKGL 258
T+ PGG GL
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGL 512
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 30.2 bits (69), Expect = 0.86
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 77 ILTQHRALIFCQLRAMLDIVENDL----FKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD 132
+LT +++IFC+ + + + + L G++ R AI+ F
Sbjct: 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVAC-------LTGNLEGAQRDAIMDSFRVG 406
Query: 133 PTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRA---HRIG 180
T V L+TT V G++++ + V+ D P+ D HRIG
Sbjct: 407 -TSKV-LVTTNVIARGIDVSQVNLVVNYD---MPLDQAGRPDPQTYLHRIG 452
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 29.4 bits (66), Expect = 1.3
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 69
>3qph_A TRMB, A global transcription regulator; transcriptional regulator;
HET: SUC; 2.99A {Pyrococcus furiosus}
Length = 342
Score = 29.4 bits (65), Expect = 1.3
Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 23 YEALVSRPGLNLSDIRHAAKLP------ALKQLLMDCGIGASPGMSGSGPHYDPGAPPPS 76
Y L+ +I + +P + L + G + G+ Y P
Sbjct: 24 YWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLR---GFVTEIEGTPKVYAA-YSPRI 79
Query: 77 ILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAI 125
+ + + ++ + + N + + P + R + R ++
Sbjct: 80 AFFRFKKELEDIMKKLEIELNNVKKEEQRPAIWRSRSFDEAIEMFRESL 128
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein,
thermoph protein, periplasmic binding protein, sugar
binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Length = 386
Score = 29.3 bits (66), Expect = 1.5
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 7/50 (14%)
Query: 124 AIVTKFNSDPTIDVLLLTTQVGGLGLNL-------TGADTVIFVDHDWSP 166
F V ++ + AD V+ V HDW
Sbjct: 19 EQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVG 68
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary
adenylate cyclase 1 receptor-short...; G-protein coupled
receptor; HET: MAL; 1.80A {Escherichia coli} PDB:
3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Length = 475
Score = 29.1 bits (65), Expect = 1.8
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 24 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 70
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Length = 477
Score = 29.0 bits (65), Expect = 1.8
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 37 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 83
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 29.0 bits (65), Expect = 2.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 255 LKGLLDTLPELWDERE--YEEEYDLSN 279
L+G+ LPEL E++ +Y LS
Sbjct: 436 LEGIRRNLPELPSEKKERIMRDYGLSE 462
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 29.0 bits (65), Expect = 2.0
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 68
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera;
MCSG, pcsep, MBP-fused target, structural genomics; HET:
MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A*
3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A*
3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A*
2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Length = 487
Score = 29.0 bits (65), Expect = 2.0
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 26 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 72
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane
space import AND...; disulfide bond, alpha helix,
fusion, sugar transport; HET: MAL; 3.00A {Escherichia
coli}
Length = 465
Score = 29.0 bits (65), Expect = 2.1
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid
hormone receptor...; GPCR, extracellular domain, PTHRP,
PTH, PThr1, sugar transpo transport, membrane protein;
HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 29.1 bits (65), Expect = 2.1
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 24 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 70
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 28.6 bits (64), Expect = 2.3
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 27.3 bits (61), Expect = 2.5
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 134 TIDVLLLTTQVGGLGLNLTGADTVIFV 160
+V L+ LGL+L+ + +
Sbjct: 3 KFNVDLMKKAGKELGLSLSPNEIGCTI 29
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 28.7 bits (64), Expect = 2.6
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 36 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 82
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 28.8 bits (64), Expect = 2.6
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered
binding protein, antibody mimic, synthetic protein
interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A*
3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Length = 461
Score = 28.6 bits (64), Expect = 2.7
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 20 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 66
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein;
viral protein, viral membrane fusion, hairpin, chimera;
HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Length = 463
Score = 28.6 bits (64), Expect = 2.7
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 69
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA
associated factor 29; histone, tudor domain, histone
binding protei; HET: MLY MAL; 1.48A {Escherichia coli}
PDB: 3mp1_A* 3mp8_A*
Length = 522
Score = 28.7 bits (64), Expect = 2.8
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 69
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
nucleotide-binding, isoprene biosynthesis, transferase,
ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex
aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Length = 271
Score = 28.3 bits (64), Expect = 2.9
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 45 ALKQLLMDCGIGASPGMSGSGP 66
+ + + G +SGSG
Sbjct: 224 EVYRFVEYLGFKPF--VSGSGS 243
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell
membrane protein, immunoglobulin-folding, inter
adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Length = 507
Score = 28.6 bits (64), Expect = 2.9
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 68
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate
pathway, isoprenoid biosynthesis, transferase; HET: ADP;
2.00A {Escherichia coli} PDB: 1oj4_A*
Length = 283
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 10 NHPKLVLGPSHAQYEALVSRPGLN-LSDI--RHAAKLPALKQLLMDCGIGASPGMSGSGP 66
P+L E L+ N I + ++ A+ L++ ++G+G
Sbjct: 186 KDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYA---PSRLTGTGA 242
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2;
deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A
{Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Length = 509
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 69
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 28.3 bits (63), Expect = 3.4
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 28.4 bits (63), Expect = 3.7
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 68
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 28.3 bits (63), Expect = 3.8
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 124 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Length = 568
Score = 28.3 bits (63), Expect = 3.8
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 124 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 166
+ KF D I V G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 68
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 26.1 bits (58), Expect = 5.5
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 134 TIDVLLLTTQVGGLGLNLTGADTVIFV 160
+V L+ LGL+L+ + +
Sbjct: 9 KFNVDLMKKAGKELGLSLSPNEIGCTI 35
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 27.6 bits (61), Expect = 6.1
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 235 CLDGQDSRQEAGSSG----TNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQ 282
C DG S + G + +L P D R Y + L F
Sbjct: 618 CFDGPRSNIILEDNNEVEIITRIGERKVL--KPRWLDARVYSDHQSLKWFKD 667
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 27.6 bits (61), Expect = 6.6
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 255 LKGLLDTLPELWDER--EYEEEYDLS 278
K + + LPEL + Y +EY L
Sbjct: 448 KKKIKENLPELPQAKVERYVKEYKLD 473
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,484,157
Number of extensions: 270887
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 54
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)