RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15261
(292 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 111 bits (277), Expect = 5e-29
Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 31/270 (11%)
Query: 2 LRYLQSVCNHPKLVLGPSHAQYEA-------LVSRPGLNLSDIRHAAKLPALKQLLMDCG 54
+ L+ +CNHP L+ E + + + K+ L +L
Sbjct: 55 ITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR 114
Query: 55 IGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114
S + ++ LD+ E V
Sbjct: 115 TTTS----------------------DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM 152
Query: 115 GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMD 174
+ + N + +L+++ GG GLNL GA+ ++ D DW+P D QAM
Sbjct: 153 --SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 210
Query: 175 RAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
R R GQKK +YRL++ T+EEKI+ Q K ++ V++ E + G++ +LF
Sbjct: 211 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELF 270
Query: 235 CLDGQDSRQEAGSSGTNPGGLKGLLDTLPE 264
L+ + + P+
Sbjct: 271 SLNEKTLSDTHDRFRCRRCVNGRQVRPPPD 300
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 104 bits (260), Expect = 2e-27
Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 23 YEALVSRPGLNLSDIRHAAKLPALKQLLMD-CGIGASPGMSGSGPHYDPGAPPPSILTQ- 80
Y+A V N+ + + + L+ I P + G + +
Sbjct: 18 YKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 77
Query: 81 --------HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSD 132
+ IF Q M I+ N + K L G + R I++KF ++
Sbjct: 78 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN--TEVPFLYGELSKKERDDIISKFQNN 135
Query: 133 PTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLIT 192
P++ ++L+ + GG G+NLT A+ VI D W+P + QA DR +RIGQ + V V++LI+
Sbjct: 136 PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 195
Query: 193 KNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
TLEEKI L FK +I+S + + ++T ++ + L
Sbjct: 196 VGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELS 240
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 71.9 bits (175), Expect = 3e-15
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNS-------DP 133
+ ++F R + N + G+ R G + +
Sbjct: 162 SKIIVFTNYRETAKKIVN---ELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG 218
Query: 134 TIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITK 193
+VL+ T VG GL++ D V+F + S ++ +Q R R G+ V L+ K
Sbjct: 219 EFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ---RRGRTGRHMPGRVIILMAK 274
Query: 194 NTLEEKIM 201
T +E
Sbjct: 275 GTRDEAYY 282
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 57.2 bits (137), Expect = 2e-10
Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 77 ILTQH---RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDP 133
IL +H + +IF + ++ ++ + + R I+ F +
Sbjct: 87 ILERHRKDKIIIFTRHNELVY------RISKVFLIPAIT--HRTSREEREEILEGFRTGR 138
Query: 134 TIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQ-KKVVNVYRLIT 192
++++QV G+++ A+ + + S + +Q + R R + KK +Y LI+
Sbjct: 139 FR--AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196
Query: 193 KNT 195
+ T
Sbjct: 197 RGT 199
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 42.6 bits (99), Expect = 9e-06
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 9/131 (6%)
Query: 80 QHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 139
+ L+FC+ + + + L + +L
Sbjct: 28 EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG-----DLSQSQREKVIRLFKQKKIRIL 82
Query: 140 LTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLE-- 197
+ T V G+++ + VI +P + + R R G+K +I + +
Sbjct: 83 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK--AISIINRREYKKL 140
Query: 198 EKIMNLQKFKL 208
I K K+
Sbjct: 141 RYIERAMKLKI 151
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 37.4 bits (86), Expect = 0.001
Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141
+I+ + + + L + +V+ + KF ID L+ T
Sbjct: 27 GGIIYARTGEEAEEIYESLKN---------KFRIGIVTATKKGDYEKFVEG-EIDHLIGT 76
Query: 142 TQV-GGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
G L L + + F ++ + + V + L E++
Sbjct: 77 AHYYGTLVRGLDLPERIRFAVF-VGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 135
Query: 201 MNLQKFKLLTANTVINSENRNL 222
+ + + ++
Sbjct: 136 LPAVERHIDEVREILKKVMGKE 157
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 33.0 bits (75), Expect = 0.035
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 18/109 (16%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTY--------LRLDGSVVSTARHAIVTKFNSDP 133
R LIFC + D + L + V Y + G VV A A++T F D
Sbjct: 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD- 96
Query: 134 TIDVLLLTTQV--GGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIG 180
D ++ + +L T+ + R R G
Sbjct: 97 -FDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDA------VSRTQRRG 138
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.52
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 7/126 (5%)
Query: 81 HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 140
++ +IF + + L + P + R +R+ F +
Sbjct: 28 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA---- 83
Query: 141 TTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKI 200
T + G G+++ + D L + RA R G K + ++ + +
Sbjct: 84 -TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL--AITFVSDENDAKIL 140
Query: 201 MNLQKF 206
++Q
Sbjct: 141 NDVQDR 146
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 27.0 bits (59), Expect = 1.5
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 141
R LIFC + D + L + V Y + + DV+++
Sbjct: 37 RHLIFCHSKKKCDELAAKLVALGINAVAY------------YRGLDVSVIPTNGDVVVVA 84
Query: 142 TQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIG 180
T G D+VI + +D A+ R R G
Sbjct: 85 TDALMTGFT-GDFDSVIDCNTSDGKPQD--AVSRTQRRG 120
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 26.7 bits (57), Expect = 4.2
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 38 RHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAML 93
+A Q+L D + P + PP ++ + LR +
Sbjct: 46 SYAL----CTQVLEDRRFSMKETAAAGAPRLNALTVPPEVVNNMGNIADAGLRKAV 97
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.7 bits (55), Expect = 4.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 139 LLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVV 185
L++T V GL++ +I D + + + R+ R G+K V
Sbjct: 88 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA 134
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 26.1 bits (57), Expect = 5.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 262 LPELWDEREYEEEYDLSNFVQ 282
P DER ++ LS F++
Sbjct: 273 RPRWCDERVSSDQSALSEFIK 293
>d2vhla2 c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Bacillus subtilis
[TaxId: 1423]}
Length = 301
Score = 26.0 bits (55), Expect = 6.3
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 223 DTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQ 282
A G ++ GQ ++ + G L G + + E ++
Sbjct: 225 SMRAKGLKDGVYEFGGQSVTVRGRTALLSDGTLAGSILKMNEGARHMREFTNCSWTDIAN 284
Query: 283 --SLNP 286
S N
Sbjct: 285 ITSENA 290
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 25.7 bits (55), Expect = 8.2
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 252 PGGLKGLLDTLPELWDEREYEEEYDLSNFVQ--SLNP 286
P G+ + D + L+ D+ FV S
Sbjct: 281 PNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKA 317
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo
sapiens), fibroblast [TaxId: 9606]}
Length = 65
Score = 23.6 bits (51), Expect = 8.4
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 189 RLITKNTLEEKIMNLQKFKLLTANTVINSENRNL 222
R + +KI +QKF L ++S+ +
Sbjct: 21 RRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEV 54
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 25.3 bits (54), Expect = 9.3
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 252 PGGLKGLLDTLPELWDEREYEEEYDLSNFVQ--SLNP 286
P G + D L L+ E + L+ FV S
Sbjct: 284 PNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKA 320
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 24.0 bits (52), Expect = 9.6
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 137 VLLLTTQVGGLGLNLTGADTVIFVDH--DWSPMKD--LQAMDRAHRIGQKKVVNV 187
V+L Q G +GL L D IFV SP L+ D+ +I +
Sbjct: 6 VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0366 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,072,236
Number of extensions: 48353
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 17
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.8 bits)