BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15264
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CMK|I Chain I, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And
Closed Conformations
Length = 22
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 16 DFLTTGRTGRRNALPDIL 33
DF+ +GRTGRRNA+ DIL
Sbjct: 5 DFIASGRTGRRNAIHDIL 22
>pdb|2CPK|I Chain I, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|1APM|I Chain I, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
pdb|1ATP|I Chain I, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|1CDK|I Chain I, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With
Protein Kinase Inhibitor Peptide Fragment 5-24
(Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|J Chain J, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With
Protein Kinase Inhibitor Peptide Fragment 5-24
(Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1YDT|I Chain I, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|I Chain I, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|I Chain I, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
pdb|1FMO|I Chain I, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1STC|I Chain I, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit
In Complex With Staurosporine
pdb|1Q24|I Chain I, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q61|I Chain I, Pka Triple Mutant Model Of Pkb
pdb|1Q62|I Chain I, Pka Double Mutant Model Of Pkb
pdb|1Q8T|B Chain B, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|B Chain B, The Catalytic Subunit Of Camp-Dependent Protein Kinase
In Complex With Rho-Kinase Inhibitor H-1152p
pdb|1Q8W|B Chain B, The Catalytic Subunit Of Camp-Dependent Protein Kinase
In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1RDQ|I Chain I, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
pdb|1SMH|B Chain B, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1SVE|B Chain B, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|B Chain B, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1SVH|B Chain B, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1VEB|B Chain B, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|1XH4|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH5|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH7|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH9|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XHA|B Chain B, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2C1A|I Chain I, Structure Of Camp-Dependent Protein Kinase Complexed
With Isoquinoline-5-Sulfonic Acid
(2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide
pdb|2C1B|I Chain I, Structure Of Camp-Dependent Protein Kinase Complexed
With (4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2ERZ|I Chain I, Crystal Structure Of C-amp Dependent Kinase (pka) Bound
To Hydroxyfasudil
pdb|2GFC|I Chain I, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|2GNF|I Chain I, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
With Y- 27632
pdb|2GNG|I Chain I, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|I Chain I, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|I Chain I, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
pdb|2GNJ|I Chain I, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|I Chain I, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor
H- 1152p
pdb|2F7E|I Chain I, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|I Chain I, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|I Chain I, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2JDS|I Chain I, Structure Of Camp-Dependent Protein Kinase Complexed
With A- 443654
pdb|2JDT|I Chain I, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|I Chain I, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2OH0|I Chain I, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|I Chain I, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2GU8|C Chain C, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
pdb|2UVX|I Chain I, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UVY|I Chain I, Structure Of Pka-pkb Chimera Complexed With
Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine
pdb|2UVZ|I Chain I, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|I Chain I, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|I Chain I, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW4|I Chain I, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW5|I Chain I, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|I Chain I, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|I Chain I, Structure Of Pka-Pkb Chimera Complexed With
4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2UW8|I Chain I, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2UZT|B Chain B, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|I Chain I, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|2 Chain 2, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|I Chain I, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2VNW|I Chain I, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|I Chain I, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO0|I Chain I, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO3|I Chain I, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|I Chain I, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
pdb|2VO7|I Chain I, Structure Of Pka Complexed With
4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|2QUR|B Chain B, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
pdb|3E8C|G Chain G, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp- Competitive Inhibitors
pdb|3E8C|H Chain H, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp- Competitive Inhibitors
pdb|3E8C|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp- Competitive Inhibitors
pdb|3E8C|J Chain J, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp- Competitive Inhibitors
pdb|3E8C|K Chain K, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp- Competitive Inhibitors
pdb|3E8C|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp- Competitive Inhibitors
pdb|3E8E|G Chain G, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp-Competitive Inhibitors
pdb|3E8E|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp-Competitive Inhibitors
pdb|3E8E|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp-Competitive Inhibitors
pdb|3E8E|J Chain J, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp-Competitive Inhibitors
pdb|3E8E|N Chain N, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp-Competitive Inhibitors
pdb|3E8E|Q Chain Q, Crystal Structures Of The Kinase Domain Of Pka In
Complex With Atp-Competitive Inhibitors
pdb|3DND|I Chain I, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|I Chain I, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3FJQ|I Chain I, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3MVJ|I Chain I, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|J Chain J, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|K Chain K, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3OW3|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines
As Potent Pan Akt Inhibitors
pdb|3KKV|I Chain I, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor.
pdb|3L9L|C Chain C, Crystal Structure Of Pka With Compound 36
pdb|3L9L|D Chain D, Crystal Structure Of Pka With Compound 36
pdb|3L9M|C Chain C, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|D Chain D, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|C Chain C, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
pdb|3NX8|B Chain B, Human Camp Dependent Protein Kinase In Complex With
Phenol
pdb|3AMA|B Chain B, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|B Chain B, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
pdb|3OOG|B Chain B, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|B Chain B, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|B Chain B, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|B Chain B, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|B Chain B, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|B Chain B, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|4DH1|I Chain I, Low Temperature X-ray Structure Of Camp Dependent
Protein Kinase A Catalytic Subunit With Low Mg2+, Atp
And Ip20
pdb|4DH3|I Chain I, Low Temperature X-ray Structure Of Camp Dependent
Protein Kinase A Catalytic Subunit With High Mg2+, Atp
And Ip20
pdb|4DH5|I Chain I, Room Temperature X-ray Structure Of Camp Dependent
Protein Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|I Chain I, Low Temperature X-ray Structure Of Camp Dependent
Protein Kinase A Catalytic Subunit With High Mg2+,
Amp-pnp And Ip20'
pdb|4DH8|I Chain I, Room Temperature X-ray Structure Of Camp Dependent
Protein Kinase A Catalytic Subunit With High Mg2+,
Amp-pnp And Ip20
pdb|4AXA|I Chain I, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
pdb|3VQH|B Chain B, Bromine Sad Partially Resolves Multiple Binding Modes
For Pka Inhibitor H-89
pdb|4DG3|A Chain A, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 20
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 16 DFLTTGRTGRRNALPD 31
DF+ +GRTGRRNA+ D
Sbjct: 5 DFIASGRTGRRNAIHD 20
>pdb|1CTP|I Chain I, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 20
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 16 DFLTTGRTGRRNALPD 31
DF+ +GRTGRRNA+ D
Sbjct: 5 DFIASGRTGRRNAIHD 20
>pdb|3QAM|I Chain I, Crystal Structure Of Glu208ala Mutant Of Catalytic
Subunit Of Camp- Dependent Protein Kinase
Length = 19
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 16 DFLTTGRTGRRNAL 29
DF+ +GRTGRRNA+
Sbjct: 5 DFIASGRTGRRNAI 18
>pdb|2XGG|A Chain A, Structure Of Toxoplasma Gondii Micronemal Protein 2 A_i
Domain
pdb|2XGG|B Chain B, Structure Of Toxoplasma Gondii Micronemal Protein 2 A_i
Domain
Length = 178
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 37 ARTSVADLPDQLGALSTSDGNAAVLAV--TLSRTSEKSVPRFLIS 79
A +V D+P + G+ +TSDG A + T SR + VP+ +I
Sbjct: 84 AAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIG 128
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 DQARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGA 50
+QA+ I+ FLTT RN+ G+ TS L + +GA
Sbjct: 361 EQAKKITAVFLTTAYQSTRNS-----GDETYTSAKTLAESIGA 398
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain
Of Slow Type Myosin-Binding Protein C
Length = 120
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 29 LPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRF-LISH 80
+ D+ GEN + D DGNAA+ T+ + +KS+ F +I H
Sbjct: 26 IEDVWGENVALTWTPPKD--------DGNAAITGYTIQKADKKSMEWFTVIEH 70
>pdb|3QAL|I Chain I, Crystal Structure Of Arg280ala Mutant Of Catalytic
Subunit Of Camp- Dependent Protein Kinase
Length = 18
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 16 DFLTTGRTGRRNAL 29
DF+ +GRTGRRNA+
Sbjct: 5 DFIASGRTGRRNAI 18
>pdb|1IV2|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV3|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV4|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
Length = 152
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 44 LPDQLGALSTSDGNAAVLAVT 64
+P +GAL+ SDG+AA+ A+T
Sbjct: 25 IPSPVGALAHSDGDAAMHALT 45
>pdb|1IV1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 152
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 44 LPDQLGALSTSDGNAAVLAVT 64
+P +GAL+ SDG+AA+ A+T
Sbjct: 25 IPSPVGALAHSDGDAALHALT 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,874,605
Number of Sequences: 62578
Number of extensions: 88693
Number of successful extensions: 256
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)