Query psy15264
Match_columns 118
No_of_seqs 123 out of 1053
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 16:34:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2087|consensus 99.7 1.2E-17 2.6E-22 134.2 4.1 98 16-117 5-102 (363)
2 PHA03234 DNA packaging protein 99.4 2.9E-13 6.3E-18 108.0 3.7 71 26-96 19-91 (338)
3 KOG4219|consensus 99.2 8.1E-12 1.7E-16 102.1 4.7 66 44-117 40-105 (423)
4 PHA02834 chemokine receptor-li 98.9 1.2E-09 2.7E-14 85.9 3.1 49 44-93 33-81 (323)
5 PHA03087 G protein-coupled che 98.8 5.7E-09 1.2E-13 81.7 6.0 69 26-95 27-95 (335)
6 PHA02638 CC chemokine receptor 98.8 3.3E-09 7.1E-14 87.0 3.3 51 44-95 103-153 (417)
7 PHA03235 DNA packaging protein 98.8 5.2E-09 1.1E-13 85.7 3.9 69 27-95 20-90 (409)
8 KOG4220|consensus 98.6 1.2E-08 2.6E-13 84.3 2.3 50 46-95 37-86 (503)
9 PF00001 7tm_1: 7 transmembran 98.4 1.3E-07 2.8E-12 68.5 1.9 46 56-101 1-46 (257)
10 PF10320 7TM_GPCR_Srsx: Serpen 97.6 4.6E-05 9.9E-10 58.7 2.4 46 50-95 1-46 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 95.1 0.012 2.7E-07 45.7 1.8 52 48-99 5-56 (318)
12 PF05296 TAS2R: Mammalian tast 93.6 0.049 1.1E-06 43.1 2.3 58 46-103 13-73 (303)
13 PF10328 7TM_GPCR_Srx: Serpent 92.7 0.055 1.2E-06 41.5 1.2 45 49-93 3-47 (274)
14 PF05462 Dicty_CAR: Slime mold 74.2 1.2 2.6E-05 35.5 0.4 49 46-94 13-61 (303)
15 PF11710 Git3: G protein-coupl 71.1 1.7 3.6E-05 32.6 0.5 26 69-94 31-56 (201)
16 PF10317 7TM_GPCR_Srd: Serpent 69.8 0.89 1.9E-05 35.4 -1.2 50 46-95 5-55 (292)
17 PF10323 7TM_GPCR_Srv: Serpent 59.7 7.4 0.00016 30.3 2.2 60 51-110 6-71 (283)
18 PF10321 7TM_GPCR_Srt: Serpent 55.1 10 0.00022 30.4 2.3 42 50-91 43-84 (313)
19 PF00002 7tm_2: 7 transmembran 47.8 6.2 0.00013 29.2 0.0 45 47-91 8-52 (242)
20 PF03402 V1R: Vomeronasal orga 45.7 34 0.00074 26.9 3.9 27 68-94 5-31 (265)
21 PF10327 7TM_GPCR_Sri: Serpent 24.2 46 0.00099 26.2 1.5 52 46-97 15-70 (303)
No 1
>KOG2087|consensus
Probab=99.69 E-value=1.2e-17 Score=134.18 Aligned_cols=98 Identities=32% Similarity=0.336 Sum_probs=92.7
Q ss_pred cccccCCCCCCCCCCccccchhhhhhccchhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 16 DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 16 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
...|.|.++..++|++..+...+|+ .+|++++++++||.+|++.+...+.+.++..+++.|||+||++||+++..+
T Consensus 5 ~~~C~P~~da~~pcEdllg~~~lRi----~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~i 80 (363)
T KOG2087|consen 5 VITCKPSPDAFNPCEDLLGYWILRI----SVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLI 80 (363)
T ss_pred cceecCCCCCCCcHHHhhccceeee----hhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHH
Confidence 4678999999999999999999884 499999999999999999999888888899999999999999999999999
Q ss_pred HHhhhhhhhhhhhccccccccC
Q psy15264 96 AIKDLQSTEVYFNYAYDWQKVK 117 (118)
Q Consensus 96 ~~~~~~~~~~Y~~~~~~W~~~~ 117 (118)
+.+|..++++|+.|+.+||.|.
T Consensus 81 a~vD~~~~gey~~~ai~W~tg~ 102 (363)
T KOG2087|consen 81 ASVDAKTRGEYYKHAIDWQTGL 102 (363)
T ss_pred HHhhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999999986
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.37 E-value=2.9e-13 Score=107.95 Aligned_cols=71 Identities=7% Similarity=0.043 Sum_probs=54.1
Q ss_pred CCCCCccccchhhhhhccchhhhhhccccccchhheeee--eeccCcCCchhhHhHHHHHHHHHHHHHHHHHH
Q psy15264 26 RNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVT--LSRTSEKSVPRFLISHLAMADLCMAFYLLLLA 96 (118)
Q Consensus 26 ~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~--~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~ 96 (118)
..+|+.....+..+....+.+.+++++|++||++|++++ .+++++|+++|+|++|||+||+++++.+||++
T Consensus 19 ~~~c~~~~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~ 91 (338)
T PHA03234 19 NASCISTPTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLT 91 (338)
T ss_pred CCCCcCchHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347765433344444434566799999999999999955 45556689999999999999999999888764
No 3
>KOG4219|consensus
Probab=99.23 E-value=8.1e-12 Score=102.08 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=55.5
Q ss_pred chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccC
Q psy15264 44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVK 117 (118)
Q Consensus 44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~~~~~Y~~~~~~W~~~~ 117 (118)
+++.++++++++||++|+|+...+|++|+++|+|++|||+||++++++..+ +.-.|..| ..|.+|+
T Consensus 40 i~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~-------f~f~yal~-~~W~~G~ 105 (423)
T KOG4219|consen 40 IAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTV-------FNFQYALH-QEWYFGS 105 (423)
T ss_pred HHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHH-hcccccc
Confidence 455688899999999999999999999999999999999999999988654 45556666 4687775
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.87 E-value=1.2e-09 Score=85.95 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=40.1
Q ss_pred chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHH
Q psy15264 44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLL 93 (118)
Q Consensus 44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~ 93 (118)
+.+.+++++|++||++|++++.++++ ++++|+|++|||+||+++++.+|
T Consensus 33 ~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~~lP 81 (323)
T PHA02834 33 VFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVFSFP 81 (323)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHHHHH
Confidence 45678889999999999998877554 46789999999999998755544
No 5
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.84 E-value=5.7e-09 Score=81.69 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCCCccccchhhhhhccchhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 26 RNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 26 ~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
.++|+.................+++++|++||+++++++.++ +.|++.|+++.|||++|++.++..|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~ 95 (335)
T PHA03087 27 YADCDLNIGYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQ 95 (335)
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHH
Confidence 466765443322222212345678899999999999999888 889999999999999999887765543
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.79 E-value=3.3e-09 Score=86.98 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=43.4
Q ss_pred chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
..+++++++|++||++|++++.+ |++|+++|++++|||++|+++++.+|.+
T Consensus 103 ~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~lPf~ 153 (417)
T PHA02638 103 IFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDFPFI 153 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999987654 7788999999999999999987766655
No 7
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.77 E-value=5.2e-09 Score=85.74 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=47.5
Q ss_pred CCCCccccchhhhhhccchhhhhhccccccchhheeeeee-cc-CcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 27 NALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLS-RT-SEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 27 ~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~-~~-~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
++|+........+.+..+.+.+++++|++||++|++++.+ +| ++++.+|+|++|||+||+++.+++|..
T Consensus 20 ~~c~~~~~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~ 90 (409)
T PHA03235 20 DTCVPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFI 90 (409)
T ss_pred CCCCchhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3465433333344443355678899999999999997543 22 334667899999999999986665544
No 8
>KOG4220|consensus
Probab=98.65 E-value=1.2e-08 Score=84.28 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=46.5
Q ss_pred hhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 46 DQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 46 ~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
...+.++.++||++|++.+...|+++++.|||+++||+||+..|++.+++
T Consensus 37 ~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl 86 (503)
T KOG4220|consen 37 TGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNL 86 (503)
T ss_pred hhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechH
Confidence 34778899999999999999999999999999999999999999988877
No 9
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.40 E-value=1.3e-07 Score=68.47 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=40.2
Q ss_pred cchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q psy15264 56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQ 101 (118)
Q Consensus 56 GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~ 101 (118)
||+++++++.++|+++++.+++++|||++|++.++..+|..+....
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~ 46 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL 46 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccc
Confidence 8999999999999999999999999999999999988887655433
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.56 E-value=4.6e-05 Score=58.66 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=41.5
Q ss_pred hccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 50 ALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 50 ~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
+++|++||...+.+..++|++|++.++++..+|++|++......+-
T Consensus 1 ~~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~ 46 (257)
T PF10320_consen 1 FIIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPF 46 (257)
T ss_pred CEEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 4689999999999999999999999999999999999987765554
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=95.10 E-value=0.012 Score=45.74 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=42.0
Q ss_pred hhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264 48 LGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD 99 (118)
Q Consensus 48 ~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~ 99 (118)
++.++|+++|.+-+.++.|+.-+.+++|.++.-.|++|++..+...+..+..
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~ 56 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFF 56 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999987654455899999999999999887766655433
No 12
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=93.62 E-value=0.049 Score=43.07 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=44.5
Q ss_pred hhhhhccccccchhheeeee---eccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy15264 46 DQLGALSTSDGNAAVLAVTL---SRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST 103 (118)
Q Consensus 46 ~~~i~~~gl~GN~lvl~~~~---~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~~~ 103 (118)
..+.+++|++||+.++.+-. +++|+.++.+..+.+||++.++.-.......+....+.
T Consensus 13 ~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~ 73 (303)
T PF05296_consen 13 LVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFP 73 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45678999999999887754 45566789999999999999998777665555554433
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=92.66 E-value=0.055 Score=41.55 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=39.5
Q ss_pred hhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHH
Q psy15264 49 GALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLL 93 (118)
Q Consensus 49 i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~ 93 (118)
+.++|++-|.++++...+.+++|++-+..-.|.|++|.+....-.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l 47 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFL 47 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999998876443
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=74.15 E-value=1.2 Score=35.51 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=41.1
Q ss_pred hhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHH
Q psy15264 46 DQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLL 94 (118)
Q Consensus 46 ~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~ 94 (118)
..+...++++|-++++......|+.|++.+=.++-++++|++..+....
T Consensus 13 ~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~ 61 (303)
T PF05462_consen 13 ELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMI 61 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999987765443
No 15
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=71.09 E-value=1.7 Score=32.56 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=19.7
Q ss_pred CcCCchhhHhHHHHHHHHHHHHHHHH
Q psy15264 69 SEKSVPRFLISHLAMADLCMAFYLLL 94 (118)
Q Consensus 69 ~~~~~~n~~l~nLAvaDll~~~~l~~ 94 (118)
++++.-+-+++||.+||++-++....
T Consensus 31 r~~~fR~~LIl~L~~aD~~qal~~~i 56 (201)
T PF11710_consen 31 RRRSFRHQLILNLLLADFIQALAFLI 56 (201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556999999999999886554
No 16
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=69.85 E-value=0.89 Score=35.36 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=39.3
Q ss_pred hhhhhccccccchhheeeeeec-cCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264 46 DQLGALSTSDGNAAVLAVTLSR-TSEKSVPRFLISHLAMADLCMAFYLLLL 95 (118)
Q Consensus 46 ~~~i~~~gl~GN~lvl~~~~~~-~~~~~~~n~~l~nLAvaDll~~~~l~~~ 95 (118)
..+.+.+|++-|.+.++...++ ++.-+.-.+++.|-|+.|+..++.....
T Consensus 5 ~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~ 55 (292)
T PF10317_consen 5 HPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLT 55 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999876654 5556678899999999999987765543
No 17
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=59.68 E-value=7.4 Score=30.25 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=35.7
Q ss_pred ccccccchhheeeeeeccC----cCCchhhHhHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhcc
Q psy15264 51 LSTSDGNAAVLAVTLSRTS----EKSVPRFLISHLAMADLCMAFYLLLLAIKDLQ--STEVYFNYA 110 (118)
Q Consensus 51 ~~gl~GN~lvl~~~~~~~~----~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~--~~~~Y~~~~ 110 (118)
++.++--..+++.+.+.|+ .+++-.-.+.+-++||++..+.-......-.. +...|+.++
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~ 71 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQ 71 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 3344445555555554443 35777778899999999987765554333333 444455554
No 18
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=55.07 E-value=10 Score=30.39 Aligned_cols=42 Identities=14% Similarity=0.024 Sum_probs=31.5
Q ss_pred hccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHH
Q psy15264 50 ALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFY 91 (118)
Q Consensus 50 ~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~ 91 (118)
.++-.+-....++++.+++..|.+.+=.++=||+.|++-...
T Consensus 43 g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~ 84 (313)
T PF10321_consen 43 GIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFI 84 (313)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHh
Confidence 333345577777777777777788888999999999986543
No 19
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=47.78 E-value=6.2 Score=29.23 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=2.5
Q ss_pred hhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHH
Q psy15264 47 QLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFY 91 (118)
Q Consensus 47 ~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~ 91 (118)
.+.+.+++.+-.+.+......|+.|+..+....||++++++..+.
T Consensus 8 ~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~ 52 (242)
T PF00002_consen 8 YVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLS 52 (242)
T ss_dssp HHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHH
Confidence 344556666666666655555666676788889999999886554
No 20
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=45.72 E-value=34 Score=26.88 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=22.2
Q ss_pred cCcCCchhhHhHHHHHHHHHHHHHHHH
Q psy15264 68 TSEKSVPRFLISHLAMADLCMAFYLLL 94 (118)
Q Consensus 68 ~~~~~~~n~~l~nLAvaDll~~~~l~~ 94 (118)
.++.+|++.-+.|||+|+.++.++-..
T Consensus 5 ~~r~kp~dlIl~hLa~aN~lvLl~rGi 31 (265)
T PF03402_consen 5 GHRLKPIDLILIHLALANILVLLSRGI 31 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhhH
Confidence 456789999999999999998775444
No 21
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=24.20 E-value=46 Score=26.19 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=36.2
Q ss_pred hhhhhccccccchhheeeeeeccCcCCchhhHh----HHHHHHHHHHHHHHHHHHH
Q psy15264 46 DQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLI----SHLAMADLCMAFYLLLLAI 97 (118)
Q Consensus 46 ~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l----~nLAvaDll~~~~l~~~~~ 97 (118)
+-+++.++++-|.++++.+..+.++...-.+++ +...++|+-+++...|...
T Consensus 15 ~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipL 70 (303)
T PF10327_consen 15 YHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPL 70 (303)
T ss_pred HHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhh
Confidence 448889999999999987765543333344455 4567889888877666543
Done!