RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15264
         (118 letters)



>gnl|CDD|145797 pfam02827, PKI, cAMP-dependent protein kinase inhibitor.  Members
          of this family are extremely potent competitive
          inhibitors of camp-dependent protein kinase activity.
          These proteins interact with the catalytic subunit of
          the enzyme after the cAMP-induced dissociation of its
          regulatory chains.
          Length = 74

 Score = 51.0 bits (122), Expect = 6e-10
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 16 DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALS 52
          DF+++GRTGRRNALPDI G +A    ++L  +L  L 
Sbjct: 9  DFISSGRTGRRNALPDIQGSSAVGGSSELALKLAELD 45


>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 33.4 bits (77), Expect = 0.014
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 9/54 (16%)

Query: 61  LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           L +  ++   ++     + +LA+ADL     L   A+        Y+    DW 
Sbjct: 1   LVILRTK-KLRTPTNIFLLNLAVADLLFLLTLPPWAL--------YYLVGGDWP 45


>gnl|CDD|221036 pfam11227, DUF3025, Protein of unknown function (DUF3025).  Some
          members in this bacterial family of proteins are
          annotated as transmembrane proteins however this cannot
          be confirmed. Currently this family of proteins has no
          known function.
          Length = 212

 Score = 25.7 bits (57), Expect = 6.1
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 9  QARDISKDFLTTGRTGRRNALPDILGENA---RTSVADLPDQL 48
           A +I++  +   R   R+AL  +  EN     ++   LPD L
Sbjct: 55 HAAEIARAGVGAVRGPLRDAL-TLFDENGVVLLSADPALPDAL 96


>gnl|CDD|185035 PRK15076, PRK15076, alpha-galactosidase; Provisional.
          Length = 431

 Score = 25.6 bits (57), Expect = 7.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 39  TSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMAD 85
           T V DLP QL AL+ ++ N   L V  + T ++      + H AM D
Sbjct: 358 TKVGDLPPQLAALNRTNINVQELTVEAALTGDRD----HVYHAAMLD 400


>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
           reductase subunit; Provisional.
          Length = 396

 Score = 25.3 bits (55), Expect = 8.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 4   VMSSDQARDISKDFLTTGRTGRRNALPDILGENART 39
           V+++ ++    + F+ TG   R   L D LGE   T
Sbjct: 92  VLTNGESWHWDQLFIATGAAARPLPLLDALGERCFT 127


>gnl|CDD|218904 pfam06123, CreD, Inner membrane protein CreD.  This family consists
           of several bacterial CreD or Cet inner membrane
           proteins. Dominant mutations of the cet gene of
           Escherichia coli result in tolerance to colicin E2 and
           increased amounts of an inner membrane protein with an
           Mr of 42,000. The cet gene is shown to be in the same
           operon as the phoM gene, which is required in a phoR
           background for expression of the structural gene for
           alkaline phosphatase, phoA. Although the Cet protein is
           not required for phoA expression, it has been suggested
           that the Cet protein has an enhancing effect on the
           transcription of phoA.
          Length = 429

 Score = 25.2 bits (56), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 86  LCMAFYLLLLAIKDLQSTEVYFNYAY 111
           L + FYLLLL++    S  + F  AY
Sbjct: 334 LVL-FYLLLLSL----SEHIGFALAY 354


>gnl|CDD|236960 PRK11715, PRK11715, inner membrane protein; Provisional.
          Length = 436

 Score = 25.2 bits (56), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 86  LCMAFYLLLLAIKDLQSTEVYFNYAY 111
           L + FYLLLL++    S  + F  AY
Sbjct: 341 LVL-FYLLLLSL----SEHIGFTLAY 361


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0948    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,778,451
Number of extensions: 482547
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 16
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (23.8 bits)