RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15264
(118 letters)
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 38.0 bits (88), Expect = 2e-04
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDW 113
GN V+ V + +S+ HL++ADL L A+ + +W
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV----------DAVANW 112
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form;
phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo
sapiens}
Length = 26
Score = 33.9 bits (77), Expect = 6e-04
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 16 DFLTTGRTGRRNALPDIL 33
DF+ +GRTGRRNA+ DIL
Sbjct: 5 DFIASGRTGRRNAIHDIL 22
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 35.9 bits (83), Expect = 0.001
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAI 97
GN V+ V L T K+ I +LA+AD + L
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGT 183
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 35.8 bits (83), Expect = 0.002
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 48 LGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
L L N L VT+ ++ +++ +LA+ADL M F
Sbjct: 48 LIMLGFP-INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 35.0 bits (80), Expect = 0.003
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAI 97
GN V+ V + T K+ I +LA+AD L ++
Sbjct: 34 GNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSV 75
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 34.3 bits (79), Expect = 0.005
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
GN V+ + L+ ++V + + +LA A+ MA
Sbjct: 49 GNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA 83
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A*
2ziy_A*
Length = 448
Score = 33.0 bits (75), Expect = 0.016
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 48 LGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
G + GN V+ + S ++ I +LA +D +
Sbjct: 44 CGIIGCG-GNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSL 85
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 31.8 bits (71), Expect = 0.038
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 56 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAI 97
N V L + ++ + I +LA++DL +
Sbjct: 80 ENIFVLLTIWKTKKF-HRPMYYFIGNLALSDLLAGVAYTANLL 121
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 31.3 bits (70), Expect = 0.053
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 48 LGALSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAI 97
A+ GN V AV L+ + ++V + + LA AD+ + + AI
Sbjct: 30 AIAVLAILGNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVGVLAIPFAI 79
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 30.1 bits (67), Expect = 0.15
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 51 LSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMA 89
L+ GN V +AV R + ++ +L+ LA+ADL +A
Sbjct: 50 LAIVFGNGLVCMAVLKER-ALQTTTNYLVVSLAVADLLVA 88
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM,
fusion, lipidic cubic phase, lipidic, mesophase,
cholesterol, membrane protein; HET: MAL CAU CLR PLM
12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A*
3ny9_A* 3nya_A* 3pds_A*
Length = 500
Score = 29.7 bits (66), Expect = 0.18
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 48 LGALSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMA 89
L L+ GN V A+ ++V + I+ LA ADL M
Sbjct: 49 LIVLAIVFGNVLVITAIAKFE-RLQTVTNYFITSLACADLVMG 90
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR,
hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 28.9 bits (64), Expect = 0.33
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 51 LSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMA 89
L T N V AV R +V I L++ADL +
Sbjct: 20 LVTVGLNLLVLYAVRSER-KLHTVGNLYIVSLSVADLIVG 58
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein;
G protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB:
4daj_A*
Length = 467
Score = 28.9 bits (64), Expect = 0.41
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 51 LSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMA 89
L T GN V +++ ++R ++V + + LA ADL +
Sbjct: 35 LVTIIGNILVMVSIKVNR-HLQTVNNYFLFSLACADLIIG 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.81
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 22/112 (19%)
Query: 4 VMSSDQARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAV 63
+S+ IS D + T +L + DLP + L+T+ +
Sbjct: 280 FLSAATTTHISLDHHSMTLT-PDEVK-SLLLKYLDCRPQDLPRE--VLTTNP-----RRL 330
Query: 64 TLSRTSEKSVPRFLISHLAMAD-----LCMAFYLLL-LAIKDLQSTEVYFNY 109
++ + + LA D C ++ ++ L+ E +
Sbjct: 331 SI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct
genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC
OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A*
2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 27.7 bits (61), Expect = 1.0
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 56 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMA 89
GN V AV L+ + ++V + + LA AD+ +
Sbjct: 48 GNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVG 81
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding,
transcriptional regulatory protein, archaeal; HET: DNA;
2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
PDB: 1ri7_A* 2zny_A* 2znz_A*
Length = 171
Score = 26.4 bits (59), Expect = 2.0
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
IL + + + ++ G L+ S
Sbjct: 34 KILQNDGKAPLREISKITG-LAES 56
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural
genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE
GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32
d.58.4.2
Length = 151
Score = 26.4 bits (59), Expect = 2.1
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
IL + + + ++ G L+ S
Sbjct: 14 KILQNDGKAPLREISKITG-LAES 36
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 26.8 bits (59), Expect = 2.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 48 LGALSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
L L+ GN V A+ ++V + I+ LA ADL M
Sbjct: 191 LIVLAIVFGNVLVITAIAKFE-RLQTVTNYFITSLACADLVMGL 233
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC
family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32
d.58.4.2
Length = 141
Score = 25.9 bits (58), Expect = 2.5
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
+IL ++ART ++ +LG +S +
Sbjct: 11 EILEKDARTPFTEIAKKLG-ISET 33
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.5
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 2 LA----VMS-SDQARDISKDFLTTGRTGR--RNALPDILGENARTS---VADLPDQLGAL 51
LA VMS + R G + A+P E R++ +A P ++ A
Sbjct: 1770 LASLADVMSIESLVE------VVFYR-GMTMQVAVPR--DELGRSNYGMIAINPGRVAAS 1820
Query: 52 STSDGNAAVLAVTLSRTSE 70
+ + V+ RT
Sbjct: 1821 FSQEALQYVVERVGKRTGW 1839
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics,
PSI-biology, protei structure initiative; HET: PLP;
3.00A {Campylobacter jejuni subsp}
Length = 619
Score = 26.0 bits (57), Expect = 4.0
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 56 GNAAVLAVTLSRTSEKSVPRFLISHLAMAD-LCMAFYLLLLAIKDLQSTEVYFNYAYDW 113
N AVL + + + L Y L +IK + E + + D
Sbjct: 327 ANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYL-HDSIDH 384
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family,
transcription, DNA- binding, transcription regulation;
2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Length = 152
Score = 25.2 bits (56), Expect = 4.2
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
+ L NART+ A+L Q G +S
Sbjct: 15 EALMGNARTAYAELAKQFG-VSPE 37
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family,
helix-turn-helix (HTH) domain, structural genom NPPSFA;
2.00A {Pyrococcus horikoshii}
Length = 151
Score = 25.2 bits (56), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
IL EN+R + +L D L +
Sbjct: 16 KILSENSRLTYRELADILN-TTRQ 38
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 25.5 bits (56), Expect = 5.0
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 48 LGALSTSDGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
L L GN V A+ ++ +++ I+ LA ADL +
Sbjct: 20 LVVLLIVAGNVLVIAAIGSTQ-RLQTLTNLFITSLACADLVVGL 62
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator;
LRP/ASNC family Gln binding, structural genomics,
NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB:
2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A*
2efp_A* 2efo_A*
Length = 150
Score = 25.2 bits (56), Expect = 5.6
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
IL NA+ S+ ++ ++ + +
Sbjct: 10 KILQYNAKYSLDEIAREIR-IPKA 32
>2w25_A Probable transcriptional regulatory protein; transcription
regulation, mutant, RV3291C, Glu104Ala, DNA-binding;
2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A*
2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A
2qz8_A
Length = 150
Score = 24.5 bits (54), Expect = 8.4
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 31 DILGENARTSVADLPDQLGALSTS 54
L + R ++++L + G LS S
Sbjct: 14 RELAADGRATLSELATRAG-LSVS 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.368
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,666,104
Number of extensions: 84462
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 32
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)