RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15264
         (118 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
            N   L VT+     ++   +++ +LA+ADL M F      +         F       
Sbjct: 54  INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL 112


>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII
           {Haemophilus influenzae [TaxId: 727]}
          Length = 257

 Score = 24.2 bits (52), Expect = 5.3
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 15  KDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVP 74
              L+ G+    N   + L E  +   AD+      L   D    +L V     S+ +  
Sbjct: 85  LFLLSRGKAATENWSIENLFEEKQNDTADI------LLVKDQFYELLDVKTRNISKSAQA 138

Query: 75  RFLISHLAMADLC 87
             +IS   +A  C
Sbjct: 139 PNIISAYKLAQTC 151


>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 60

 Score = 22.7 bits (49), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 31 DILGENARTSVADLPDQLG 49
          +IL ++ART   ++  +LG
Sbjct: 10 EILEKDARTPFTEIAKKLG 28


>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator
          PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 60

 Score = 22.3 bits (48), Expect = 7.3
 Identities = 3/19 (15%), Positives = 8/19 (42%)

Query: 31 DILGENARTSVADLPDQLG 49
           IL  + +  + ++    G
Sbjct: 10 KILQNDGKAPLREISKITG 28


>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia
          coli [TaxId: 562]}
          Length = 63

 Score = 22.3 bits (48), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 31 DILGENARTSVADLPDQLG 49
          + L  NART+ A+L  Q G
Sbjct: 12 EALMGNARTAYAELAKQFG 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,646
Number of extensions: 13125
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 8
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)