Query psy15268
Match_columns 256
No_of_seqs 185 out of 463
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 16:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0168|consensus 100.0 3.7E-51 8E-56 406.8 15.9 215 3-255 222-437 (1051)
2 COG5064 SRP1 Karyopherin (impo 100.0 8.8E-45 1.9E-49 335.6 9.2 210 1-253 122-336 (526)
3 KOG0166|consensus 100.0 2.3E-42 4.9E-47 334.6 15.4 207 1-252 117-329 (514)
4 PLN03200 cellulose synthase-in 99.8 2.6E-18 5.7E-23 187.2 18.0 208 2-247 240-492 (2102)
5 PLN03200 cellulose synthase-in 99.8 4.3E-17 9.4E-22 177.8 20.2 228 2-249 198-452 (2102)
6 KOG0166|consensus 99.5 4E-15 8.7E-20 145.2 5.5 166 3-182 247-417 (514)
7 COG5064 SRP1 Karyopherin (impo 99.4 2.2E-13 4.8E-18 127.4 4.4 166 5-183 255-425 (526)
8 cd00020 ARM Armadillo/beta-cat 99.2 6.3E-11 1.4E-15 91.4 8.2 113 33-156 3-120 (120)
9 cd00020 ARM Armadillo/beta-cat 99.1 2.7E-10 5.8E-15 87.8 9.0 102 2-116 16-120 (120)
10 KOG4224|consensus 98.6 8E-07 1.7E-11 84.5 14.2 195 13-253 186-386 (550)
11 PF10508 Proteasom_PSMB: Prote 98.5 2E-06 4.4E-11 84.8 14.9 196 2-238 86-285 (503)
12 PF04826 Arm_2: Armadillo-like 98.5 3.4E-06 7.4E-11 76.7 14.4 159 5-183 25-186 (254)
13 PF10508 Proteasom_PSMB: Prote 98.4 4.3E-06 9.2E-11 82.5 14.1 203 2-254 47-253 (503)
14 PF05804 KAP: Kinesin-associat 98.4 6.6E-06 1.4E-10 84.3 13.8 162 1-182 298-463 (708)
15 PF04826 Arm_2: Armadillo-like 98.1 3.6E-05 7.8E-10 70.0 12.2 169 34-251 9-182 (254)
16 PF05804 KAP: Kinesin-associat 98.1 4.9E-05 1.1E-09 78.0 13.9 197 8-253 263-463 (708)
17 PF00514 Arm: Armadillo/beta-c 98.1 6.2E-06 1.3E-10 54.0 4.8 41 25-73 1-41 (41)
18 KOG4224|consensus 98.0 7.9E-05 1.7E-09 71.2 12.9 161 2-183 217-387 (550)
19 KOG1048|consensus 97.9 0.00012 2.7E-09 74.6 12.4 207 8-247 388-658 (717)
20 KOG4199|consensus 97.7 0.00071 1.5E-08 64.2 12.5 206 8-252 205-424 (461)
21 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00018 4E-09 49.5 1.3 49 106-154 6-55 (55)
22 PF00514 Arm: Armadillo/beta-c 97.1 0.00023 4.9E-09 46.5 1.5 38 75-116 4-41 (41)
23 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00065 1.4E-08 46.7 3.5 53 9-71 3-55 (55)
24 smart00185 ARM Armadillo/beta- 96.9 0.0023 5.1E-08 40.6 5.0 35 32-73 7-41 (41)
25 KOG4500|consensus 96.6 0.0083 1.8E-07 58.7 8.3 129 6-183 54-189 (604)
26 PRK09687 putative lyase; Provi 96.5 0.031 6.8E-07 51.4 11.0 58 3-74 64-121 (280)
27 KOG1048|consensus 96.5 0.0075 1.6E-07 61.9 7.4 166 2-183 242-428 (717)
28 PRK09687 putative lyase; Provi 96.4 0.1 2.2E-06 48.1 13.9 124 2-155 32-156 (280)
29 PF01602 Adaptin_N: Adaptin N 96.4 0.061 1.3E-06 52.1 13.0 173 5-237 54-227 (526)
30 KOG4199|consensus 96.2 0.12 2.6E-06 49.5 13.2 161 6-177 255-421 (461)
31 PF13646 HEAT_2: HEAT repeats; 96.0 0.022 4.9E-07 41.7 6.1 87 39-152 1-88 (88)
32 PF01602 Adaptin_N: Adaptin N 95.8 0.036 7.9E-07 53.7 8.3 150 4-182 90-241 (526)
33 PF03224 V-ATPase_H_N: V-ATPas 95.8 0.065 1.4E-06 49.6 9.6 203 5-252 69-291 (312)
34 smart00185 ARM Armadillo/beta- 95.6 0.016 3.6E-07 36.5 3.3 28 128-155 13-40 (41)
35 KOG2023|consensus 95.4 0.052 1.1E-06 55.5 7.9 154 8-182 86-266 (885)
36 KOG2160|consensus 95.2 0.16 3.4E-06 48.3 9.9 134 35-182 122-263 (342)
37 PF03224 V-ATPase_H_N: V-ATPas 95.0 0.035 7.5E-07 51.4 4.9 170 2-182 114-293 (312)
38 PF13764 E3_UbLigase_R4: E3 ub 94.8 0.35 7.5E-06 50.9 11.9 209 19-244 146-376 (802)
39 KOG2160|consensus 94.7 0.62 1.3E-05 44.4 12.4 196 7-242 137-340 (342)
40 PTZ00429 beta-adaptin; Provisi 94.7 0.94 2E-05 47.4 14.8 136 3-157 150-286 (746)
41 KOG0168|consensus 94.4 0.07 1.5E-06 55.8 5.6 90 84-182 168-264 (1051)
42 KOG2171|consensus 94.1 0.49 1.1E-05 50.9 11.2 156 13-185 367-529 (1075)
43 PF02985 HEAT: HEAT repeat; I 93.8 0.14 2.9E-06 31.4 4.1 30 128-157 1-30 (31)
44 PF13646 HEAT_2: HEAT repeats; 93.7 0.38 8.2E-06 35.1 7.1 72 85-183 1-73 (88)
45 PF12348 CLASP_N: CLASP N term 93.5 0.25 5.5E-06 42.8 6.9 134 7-158 67-208 (228)
46 KOG1241|consensus 93.3 2.3 5E-05 44.4 14.0 128 13-158 345-479 (859)
47 KOG1293|consensus 92.5 2.4 5.2E-05 43.5 12.7 164 6-183 22-192 (678)
48 PF05536 Neurochondrin: Neuroc 92.4 0.65 1.4E-05 46.7 8.8 78 102-183 72-151 (543)
49 PRK13800 putative oxidoreducta 92.3 3.7 7.9E-05 43.7 14.5 112 2-156 693-804 (897)
50 KOG2122|consensus 91.4 1.1 2.4E-05 49.9 9.5 197 13-251 370-579 (2195)
51 PF12460 MMS19_C: RNAPII trans 91.4 3 6.5E-05 40.2 11.8 115 57-180 282-414 (415)
52 KOG2023|consensus 89.2 1.2 2.5E-05 46.1 7.1 110 37-157 393-506 (885)
53 PF05004 IFRD: Interferon-rela 89.0 5.7 0.00012 37.1 11.2 144 6-160 99-261 (309)
54 PF02985 HEAT: HEAT repeat; I 89.0 0.82 1.8E-05 27.8 3.8 28 39-73 2-29 (31)
55 KOG2274|consensus 88.7 12 0.00025 40.1 14.0 134 13-157 549-690 (1005)
56 PF10165 Ric8: Guanine nucleot 88.7 21 0.00045 35.1 15.3 213 5-244 44-291 (446)
57 KOG2171|consensus 88.1 12 0.00026 40.7 13.9 207 1-250 397-613 (1075)
58 PTZ00429 beta-adaptin; Provisi 87.9 28 0.00061 36.6 16.4 53 60-116 156-208 (746)
59 PF06025 DUF913: Domain of Unk 87.4 8.5 0.00018 37.1 11.5 177 13-236 3-189 (379)
60 PF05536 Neurochondrin: Neuroc 87.3 5.6 0.00012 40.1 10.6 139 6-157 69-214 (543)
61 KOG0946|consensus 86.9 12 0.00026 39.6 12.7 179 13-235 42-245 (970)
62 PRK13800 putative oxidoreducta 86.7 6.1 0.00013 42.0 11.0 112 2-157 661-772 (897)
63 PF10363 DUF2435: Protein of u 86.2 2.3 5E-05 32.9 5.7 68 86-158 6-74 (92)
64 KOG2274|consensus 84.2 22 0.00048 38.1 13.2 197 6-250 463-666 (1005)
65 cd00256 VATPase_H VATPase_H, r 83.9 8.4 0.00018 37.9 9.7 165 5-181 113-285 (429)
66 KOG1242|consensus 83.8 12 0.00026 38.1 10.9 148 15-182 275-463 (569)
67 PF12348 CLASP_N: CLASP N term 83.7 22 0.00048 30.6 11.5 202 5-253 19-227 (228)
68 PF10165 Ric8: Guanine nucleot 82.9 5.5 0.00012 39.0 8.1 89 137-253 42-131 (446)
69 KOG2122|consensus 82.7 1.6 3.5E-05 48.7 4.5 133 16-156 460-601 (2195)
70 KOG1060|consensus 82.1 11 0.00024 39.8 10.1 153 2-182 296-476 (968)
71 KOG1059|consensus 81.1 8.5 0.00018 40.3 8.7 110 106-255 163-275 (877)
72 PF12755 Vac14_Fab1_bd: Vacuol 81.1 2.2 4.7E-05 33.3 3.7 73 106-182 5-78 (97)
73 KOG1062|consensus 80.4 5.9 0.00013 41.7 7.5 25 214-238 246-270 (866)
74 KOG1062|consensus 79.2 8.6 0.00019 40.5 8.2 89 106-237 126-214 (866)
75 KOG4500|consensus 78.8 24 0.00052 35.3 10.7 172 1-182 323-500 (604)
76 KOG2032|consensus 78.3 14 0.00029 37.2 8.9 134 13-155 277-414 (533)
77 PF14668 RICTOR_V: Rapamycin-i 77.6 7.4 0.00016 29.0 5.4 55 12-74 5-59 (73)
78 PF05918 API5: Apoptosis inhib 77.4 5.6 0.00012 40.4 6.2 70 57-153 53-122 (556)
79 PF09759 Atx10homo_assoc: Spin 77.3 8.5 0.00018 30.5 6.0 57 14-76 6-62 (102)
80 PF08723 Gag_p15: Gag protein 75.8 11 0.00025 30.5 6.3 69 98-171 20-96 (123)
81 KOG1241|consensus 75.0 22 0.00047 37.6 9.6 110 36-158 318-437 (859)
82 KOG1820|consensus 74.3 44 0.00096 35.6 12.0 134 3-158 305-445 (815)
83 PF06371 Drf_GBD: Diaphanous G 73.2 9.2 0.0002 31.9 5.6 59 5-72 128-186 (187)
84 COG5215 KAP95 Karyopherin (imp 70.3 25 0.00054 36.3 8.6 116 60-183 572-691 (858)
85 KOG1240|consensus 68.1 18 0.0004 39.9 7.6 113 35-157 417-538 (1431)
86 PF11864 DUF3384: Domain of un 67.9 41 0.0009 33.0 9.7 96 57-156 228-330 (464)
87 PF09759 Atx10homo_assoc: Spin 66.3 2.5 5.5E-05 33.5 0.7 68 106-173 5-76 (102)
88 PF06371 Drf_GBD: Diaphanous G 66.3 19 0.00041 30.0 6.1 59 138-230 127-186 (187)
89 KOG1061|consensus 66.1 11 0.00024 39.4 5.4 117 57-183 363-490 (734)
90 KOG1943|consensus 65.7 37 0.0008 37.1 9.2 147 6-166 557-715 (1133)
91 PF12717 Cnd1: non-SMC mitotic 65.4 14 0.0003 31.3 5.1 49 106-157 7-55 (178)
92 KOG4535|consensus 65.3 10 0.00022 38.3 4.7 140 11-154 450-601 (728)
93 KOG4646|consensus 65.0 9.1 0.0002 32.6 3.8 119 54-180 27-149 (173)
94 KOG3678|consensus 64.0 20 0.00042 36.3 6.4 133 10-157 199-337 (832)
95 KOG1293|consensus 63.4 74 0.0016 33.1 10.5 154 55-244 388-546 (678)
96 PF11864 DUF3384: Domain of un 63.4 1.2E+02 0.0025 29.9 11.8 111 60-182 193-311 (464)
97 cd00256 VATPase_H VATPase_H, r 60.1 1.2E+02 0.0025 30.0 11.0 91 64-157 33-131 (429)
98 TIGR02270 conserved hypothetic 60.0 41 0.00089 32.8 7.9 27 39-72 88-114 (410)
99 PF06025 DUF913: Domain of Unk 59.7 76 0.0016 30.6 9.6 150 63-254 3-161 (379)
100 PF10521 DUF2454: Protein of u 58.9 32 0.0007 31.4 6.7 134 2-140 128-278 (282)
101 cd03568 VHS_STAM VHS domain fa 58.8 18 0.00039 30.1 4.6 72 110-183 20-91 (144)
102 KOG2734|consensus 58.5 50 0.0011 33.0 8.1 101 125-249 123-229 (536)
103 KOG1060|consensus 58.3 1.8E+02 0.0039 31.2 12.4 56 123-188 283-338 (968)
104 PF14668 RICTOR_V: Rapamycin-i 56.9 8.5 0.00018 28.6 2.0 52 104-155 4-57 (73)
105 KOG2611|consensus 55.7 30 0.00066 35.0 6.1 76 106-185 82-165 (698)
106 KOG0213|consensus 54.3 32 0.00069 36.6 6.2 80 2-93 850-932 (1172)
107 PF11865 DUF3385: Domain of un 53.8 34 0.00073 28.8 5.5 75 79-156 82-157 (160)
108 smart00288 VHS Domain present 53.7 30 0.00065 28.1 5.0 71 111-183 21-91 (133)
109 cd03567 VHS_GGA VHS domain fam 53.6 24 0.00052 29.3 4.4 73 109-183 20-92 (139)
110 cd03569 VHS_Hrs_Vps27p VHS dom 52.9 26 0.00056 29.0 4.5 72 110-183 24-95 (142)
111 KOG0946|consensus 52.8 2.1E+02 0.0046 30.8 11.8 173 36-249 21-213 (970)
112 KOG0213|consensus 52.4 1.3E+02 0.0028 32.3 10.2 97 55-158 810-914 (1172)
113 KOG2734|consensus 51.3 2.1E+02 0.0045 28.8 11.0 125 20-156 109-279 (536)
114 KOG1824|consensus 50.3 2.2E+02 0.0049 31.3 11.7 181 2-233 56-244 (1233)
115 KOG1824|consensus 49.1 1.8E+02 0.0038 32.1 10.7 125 38-183 612-745 (1233)
116 PF12717 Cnd1: non-SMC mitotic 49.0 1.2E+02 0.0026 25.5 8.1 54 96-157 38-93 (178)
117 PF14664 RICTOR_N: Rapamycin-i 48.4 1.9E+02 0.0041 27.8 10.3 129 13-157 87-227 (371)
118 PF00790 VHS: VHS domain; Int 48.0 15 0.00032 30.0 2.4 72 110-183 25-96 (140)
119 KOG1248|consensus 47.9 99 0.0021 34.2 8.9 103 65-170 806-910 (1176)
120 COG5181 HSH155 U2 snRNP splice 47.8 45 0.00098 34.8 6.1 160 2-182 655-829 (975)
121 TIGR02270 conserved hypothetic 47.2 1.2E+02 0.0026 29.6 8.8 91 37-156 117-207 (410)
122 PF12031 DUF3518: Domain of un 47.1 37 0.00081 31.2 4.9 115 60-183 82-227 (257)
123 PF10521 DUF2454: Protein of u 47.1 26 0.00056 32.0 4.0 69 84-156 120-203 (282)
124 KOG4413|consensus 46.6 1E+02 0.0022 30.1 7.8 140 20-175 289-455 (524)
125 PF11701 UNC45-central: Myosin 46.5 70 0.0015 26.7 6.3 126 13-154 24-157 (157)
126 PF06743 FAST_1: FAST kinase-l 46.5 26 0.00056 25.4 3.2 68 106-177 3-71 (71)
127 PF14500 MMS19_N: Dos2-interac 46.3 2.1E+02 0.0046 26.0 9.8 138 4-159 10-156 (262)
128 PF12755 Vac14_Fab1_bd: Vacuol 45.2 19 0.00041 28.0 2.4 61 84-148 28-89 (97)
129 KOG2759|consensus 44.4 1.2E+02 0.0026 30.0 8.2 141 5-156 169-321 (442)
130 COG5215 KAP95 Karyopherin (imp 44.2 4E+02 0.0087 27.9 12.3 133 11-156 383-529 (858)
131 PF08167 RIX1: rRNA processing 44.1 1.3E+02 0.0028 25.3 7.5 98 124-252 22-121 (165)
132 cd03561 VHS VHS domain family; 44.1 1.2E+02 0.0025 24.5 7.1 71 110-183 20-91 (133)
133 PF10274 ParcG: Parkin co-regu 43.6 53 0.0011 28.7 5.2 52 123-182 76-127 (183)
134 KOG1943|consensus 43.2 1.2E+02 0.0025 33.5 8.5 94 56-153 353-457 (1133)
135 KOG1061|consensus 42.7 1.1E+02 0.0024 32.2 8.1 64 2-77 130-193 (734)
136 PF11698 V-ATPase_H_C: V-ATPas 41.3 70 0.0015 26.1 5.2 59 5-72 56-114 (119)
137 PF14327 CSTF2_hinge: Hinge do 41.0 43 0.00093 25.3 3.7 42 213-254 25-68 (84)
138 KOG1059|consensus 40.9 77 0.0017 33.5 6.6 92 59-153 476-574 (877)
139 KOG0212|consensus 40.8 4.4E+02 0.0095 27.4 12.3 167 1-182 216-387 (675)
140 COG5181 HSH155 U2 snRNP splice 39.2 1.8E+02 0.0039 30.6 8.8 105 39-157 606-718 (975)
141 COG5240 SEC21 Vesicle coat com 39.1 3.1E+02 0.0068 28.8 10.4 131 13-172 432-566 (898)
142 PF08167 RIX1: rRNA processing 39.0 77 0.0017 26.6 5.4 58 124-181 64-125 (165)
143 cd08050 TAF6 TATA Binding Prot 37.1 3.7E+02 0.0079 25.4 11.4 92 82-181 205-314 (343)
144 PF13251 DUF4042: Domain of un 36.6 2.8E+02 0.0061 24.0 10.6 51 108-158 123-176 (182)
145 PF04510 DUF577: Family of unk 35.1 97 0.0021 27.0 5.4 99 40-154 6-109 (174)
146 cd03565 VHS_Tom1 VHS domain fa 35.0 1.5E+02 0.0032 24.5 6.4 71 110-182 21-93 (141)
147 KOG1222|consensus 35.0 1.5E+02 0.0032 30.3 7.3 74 13-92 524-599 (791)
148 KOG2973|consensus 34.4 1.1E+02 0.0025 29.2 6.1 63 1-75 11-73 (353)
149 PF13764 E3_UbLigase_R4: E3 ub 34.3 3.1E+02 0.0066 29.4 9.9 137 80-243 114-270 (802)
150 PF04499 SAPS: SIT4 phosphatas 34.1 83 0.0018 31.3 5.5 48 134-182 25-72 (475)
151 PF07923 N1221: N1221-like pro 32.9 2.4E+02 0.0051 26.0 8.0 29 60-93 98-126 (293)
152 PF13925 Katanin_con80: con80 32.1 1.6E+02 0.0036 24.7 6.3 36 124-159 66-101 (164)
153 KOG0414|consensus 30.8 4.3E+02 0.0094 29.6 10.4 148 5-183 935-1082(1251)
154 PF14764 SPG48: AP-5 complex s 30.5 1.4E+02 0.003 29.9 6.3 122 94-239 279-404 (459)
155 cd00197 VHS_ENTH_ANTH VHS, ENT 29.8 79 0.0017 24.5 3.8 68 111-180 21-88 (115)
156 PF11698 V-ATPase_H_C: V-ATPas 28.8 69 0.0015 26.1 3.3 55 126-183 42-97 (119)
157 PF12530 DUF3730: Protein of u 28.4 4.2E+02 0.009 23.4 13.3 72 83-157 74-152 (234)
158 KOG1991|consensus 28.1 8.1E+02 0.017 27.0 11.7 114 55-179 473-592 (1010)
159 PF08389 Xpo1: Exportin 1-like 27.7 1.2E+02 0.0026 23.6 4.6 53 125-182 80-136 (148)
160 KOG2199|consensus 27.3 1.4E+02 0.0029 29.6 5.5 73 109-183 27-99 (462)
161 KOG3665|consensus 26.6 7.7E+02 0.017 25.9 14.4 226 13-251 440-674 (699)
162 KOG2081|consensus 26.4 3.5E+02 0.0076 27.7 8.4 155 16-181 115-296 (559)
163 PF14631 FancD2: Fanconi anaem 26.4 5.4E+02 0.012 29.5 10.6 126 3-145 445-572 (1426)
164 KOG1078|consensus 26.2 1.3E+02 0.0028 32.1 5.4 63 5-80 256-318 (865)
165 KOG1991|consensus 26.0 2.4E+02 0.0052 30.9 7.4 157 13-181 391-556 (1010)
166 PF12231 Rif1_N: Rap1-interact 25.4 5.9E+02 0.013 24.2 9.6 136 9-158 150-305 (372)
167 PF12862 Apc5: Anaphase-promot 25.2 1.1E+02 0.0024 22.9 3.8 74 83-156 16-92 (94)
168 KOG1240|consensus 24.6 5E+02 0.011 29.5 9.5 97 78-183 420-518 (1431)
169 KOG0567|consensus 24.2 67 0.0015 30.0 2.7 41 36-81 217-257 (289)
170 COG5096 Vesicle coat complex, 24.1 5.1E+02 0.011 27.6 9.4 91 57-157 105-196 (757)
171 KOG1242|consensus 24.1 2.7E+02 0.0059 28.6 7.2 126 37-182 55-184 (569)
172 COG1413 FOG: HEAT repeat [Ener 24.0 4.7E+02 0.01 23.7 8.4 93 37-157 43-136 (335)
173 PF07923 N1221: N1221-like pro 22.9 1.7E+02 0.0037 26.9 5.2 60 124-183 57-127 (293)
174 PF12397 U3snoRNP10: U3 small 22.3 3.5E+02 0.0075 21.0 6.2 74 83-158 2-76 (121)
175 PF09324 DUF1981: Domain of un 21.7 1.4E+02 0.003 22.5 3.6 36 55-92 29-64 (86)
176 PF11701 UNC45-central: Myosin 21.3 1.3E+02 0.0028 25.0 3.8 78 6-92 56-133 (157)
177 COG5218 YCG1 Chromosome conden 21.1 2.2E+02 0.0047 29.9 5.8 57 124-184 88-144 (885)
178 PF01365 RYDR_ITPR: RIH domain 20.5 59 0.0013 28.0 1.6 74 101-183 75-153 (207)
No 1
>KOG0168|consensus
Probab=100.00 E-value=3.7e-51 Score=406.81 Aligned_cols=215 Identities=24% Similarity=0.366 Sum_probs=206.4
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEA 82 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~ 82 (256)
.|||+|+|+ .|||||||++|+.|++. .+||++||||+|++||. +|+ |+|||||+++|||+||++||.+||++
T Consensus 222 ~E~n~DIMl-~AcRaltyl~evlP~S~-a~vV~~~aIPvl~~kL~-~Ie-----yiDvAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 222 HEHNFDIML-LACRALTYLCEVLPRSS-AIVVDEHAIPVLLEKLL-TIE-----YIDVAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred ccccHHHHH-HHHHHHHHHHhhccchh-heeecccchHHHHHhhh-hhh-----hhHHHHHHHHHHHHHHhhccHHHHhc
Confidence 489999999 99999999999999999 56889999999999999 888 99999999999999999999999999
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
|++++||+|+|||++++|| +|+.|++|||.++++.+| +|.+++|.|+++|+|+|++++|.+|.||.|++|+|.+.
T Consensus 294 G~l~a~LsylDFFSi~aQR----~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 294 GALSAVLSYLDFFSIHAQR----VALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred ccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999 999999999999999888 99999999999999999999999999999999999999
Q ss_pred CCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHH
Q psy15268 162 GVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLL 241 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll 241 (256)
++++|.|+.+|++++.++||... |+.++..+++.+||||+.||++||...+.|+
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt--------------------------~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~ 423 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVT--------------------------PTILSNGTYTGVIRMLSLMSSGSPLLFRTLL 423 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcC--------------------------cccccccchhHHHHHHHHHccCChHHHHHHH
Confidence 99999999999999999999742 2568889999999999999999999999999
Q ss_pred hcChHHHHhhhhcc
Q psy15268 242 HSDLPDAIGCPRIY 255 (256)
Q Consensus 242 ~~~l~~~l~~~~~~ 255 (256)
+.+|.+++.++|.+
T Consensus 424 k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 424 KLDIADTLKRILQG 437 (1051)
T ss_pred HhhHHHHHHHHHhc
Confidence 99999999999864
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.8e-45 Score=335.63 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=185.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
|++++.+++..+|||||||||++|++.||+ |||+.||||.|+++|. ++..||.||++||||||+||.+ +
T Consensus 122 fm~~~q~~mlqfEAaWalTNiaSGtt~QTk-vVvd~~AVPlfiqlL~-------s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 122 FMDEIQRDMLQFEAAWALTNIASGTTQQTK-VVVDAGAVPLFIQLLS-------STEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred HHHhcchhHHHHHHHHHHhhhccCcccceE-EEEeCCchHHHHHHHc-------CchHHHHHHHHHHhccccCCchhHHH
Confidence 567777888878999999999999999996 5889999999999887 5579999999999999999955 6
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.||+.|++.++|..+. +...+.+.+|+++|++||+||+++|++ + .+.+++|+|..|+++.|++|+.|||||+|||+
T Consensus 194 ~vL~~galeplL~ll~--ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 194 YVLQCGALEPLLGLLL--SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHhcCchHHHHHHHH--hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 8999999999999997 334445667799999999999997766 4 89999999999999999999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
|| .+|+++++++.|.-+||+++|++.+ ....++.+|+.+++..|+..
T Consensus 272 Dg---~~E~i~avld~g~~~RLvElLs~~s------------------------------a~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 272 DG---PNEKIQAVLDVGIPGRLVELLSHES------------------------------AKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred cC---cHHHHHHHHhcCCcHHHHHHhcCcc------------------------------ccccCHHHHhhcCeeecCcc
Confidence 99 5799999999999999999998632 23456799999999999999
Q ss_pred HHHHHHhcChHHHHhhhh
Q psy15268 236 ITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 236 it~~Ll~~~l~~~l~~~~ 253 (256)
.|+.+++.+.-.+++-+|
T Consensus 319 QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 319 QTQVIINCGALKAFRSLL 336 (526)
T ss_pred ceehheecccHHHHHHHh
Confidence 999999999666665443
No 3
>KOG0166|consensus
Probab=100.00 E-value=2.3e-42 Score=334.58 Aligned_cols=207 Identities=21% Similarity=0.248 Sum_probs=180.3
Q ss_pred CCCC-CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---
Q psy15268 1 MLDD-TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--- 76 (256)
Q Consensus 1 ~L~~-~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--- 76 (256)
||.. .+|..++ |||||||||++|++++|+. |+++||||.|+++|. +++.||.|||+||||||+||++
T Consensus 117 ~l~~~~~~~lq~-eAAWaLTnIAsgtse~T~~-vv~agavp~fi~Ll~-------s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 117 FLSRDDNPTLQF-EAAWALTNIASGTSEQTKV-VVDAGAVPIFIQLLS-------SPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred HHccCCChhHHH-HHHHHHHHHhcCchhhccc-cccCCchHHHHHHhc-------CCcHHHHHHHHHHHhccccCChHHH
Confidence 4553 4577777 9999999999999999975 789999999999776 5689999999999999999977
Q ss_pred chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
+.|+++|++.++|.++..... -.++|+++|++||+||+++|++ + .+++++|+|..+|+|.|++|+.|||||++||
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHhhcchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 589999999999999975432 2344599999999999996555 4 8999999999999999999999999999999
Q ss_pred hhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH
Q psy15268 155 SDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP 234 (256)
Q Consensus 155 ~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~ 234 (256)
+|+ .+|++|.+++.|++++|+++|.+..+ ++.++.+|++++++.|+.
T Consensus 265 sdg---~ne~iq~vi~~gvv~~LV~lL~~~~~------------------------------~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 265 TDG---SNEKIQMVIDAGVVPRLVDLLGHSSP------------------------------KVVTPALRAIGNIVTGSD 311 (514)
T ss_pred hcC---ChHHHHHHHHccchHHHHHHHcCCCc------------------------------ccccHHHhhccceeeccH
Confidence 999 68999999999999999999986432 444679999999999999
Q ss_pred HHHHHHHhcChHHHHhhh
Q psy15268 235 SITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 235 ~it~~Ll~~~l~~~l~~~ 252 (256)
.+|+.+++++.-..+..+
T Consensus 312 ~QTq~vi~~~~L~~l~~l 329 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNL 329 (514)
T ss_pred HHHHHHHhcChHHHHHHH
Confidence 999999999954444443
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.79 E-value=2.6e-18 Score=187.19 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=157.6
Q ss_pred CCCCC-chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccC---CCCCCcHHHHHHHHHHHHHHhccccc
Q psy15268 2 LDDTA-PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAG---IASRTSKDLAEQCIKVLELICTREAG 77 (256)
Q Consensus 2 L~~~~-p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~---~~~~~~~DlaEQal~aLe~Is~d~~~ 77 (256)
|++++ ++.+. +|+|||+||+.+++++++. +++.|+||.|++.+. ... |.+-...++.|||+|+|+||||+.+.
T Consensus 240 L~sg~~~~VRE-~AA~AL~nLAs~s~e~r~~-Iv~aGgIp~LI~lL~-sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ 316 (2102)
T PLN03200 240 LGQGNEVSVRA-EAAGALEALSSQSKEAKQA-IADAGGIPALINATV-APSKEFMQGEFAQALQENAMGALANICGGMSA 316 (2102)
T ss_pred HccCCChHHHH-HHHHHHHHHhcCCHHHHHH-HHHCCCHHHHHHHHh-CcchhhhccccchHHHHHHHHHHHHHhCCchh
Confidence 44444 45555 9999999999999999976 679999999999775 211 00112356899999999999997432
Q ss_pred --------------h---hhhcCcHHHHHHhhcccCcccchhhh--hHHHHHHHHhcCCCCCCC-C-ChHHHH------H
Q psy15268 78 --------------S---VFEAGGLASVLLFIKQHGHSVHKDTL--HSAMAVVSRLCSKMEPQD-P-QLPEAV------E 130 (256)
Q Consensus 78 --------------~---Vl~~G~l~alL~~ldff~~~~qr~~l--~~a~~~vsNlCr~~~~~~-~-~v~~~l------P 130 (256)
. ....|++.+++..+|......+ .+ +++.|+++|+||+++|+. . .+.+++ |
T Consensus 317 ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~--~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~ 394 (2102)
T PLN03200 317 LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTR--AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394 (2102)
T ss_pred hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhh--hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh
Confidence 1 2455888888888885322222 11 378999999999986655 2 567776 5
Q ss_pred HHHHhhcC-------------CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCC
Q psy15268 131 ALSLLLRH-------------EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGA 197 (256)
Q Consensus 131 ~L~~lL~~-------------~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~ 197 (256)
.+..+|+| .|.++.+++|||+.|++++ +++..+.+++.|.++.|+++|.+.
T Consensus 395 ~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~------------- 458 (2102)
T PLN03200 395 YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS------------- 458 (2102)
T ss_pred HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC-------------
Confidence 55555555 5599999999999999998 568899999999999999999742
Q ss_pred CccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC-hHH
Q psy15268 198 NVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD-LPD 247 (256)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~ 247 (256)
+.......++.|++++.++++....+++.+ ||-
T Consensus 459 -----------------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 459 -----------------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred -----------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 124556788999999999999999999998 553
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.75 E-value=4.3e-17 Score=177.82 Aligned_cols=228 Identities=14% Similarity=0.144 Sum_probs=164.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+|+.|. +|+|+|++++...++.+.. |++.|+||.|++.|. . -++.++.|+|.|+|++|+++++ +.
T Consensus 198 LsS~d~~lQ~-eAa~aLa~Lass~ee~~~a-VIeaGaVP~LV~LL~-s-----g~~~~VRE~AA~AL~nLAs~s~e~r~~ 269 (2102)
T PLN03200 198 LSSGNSDAQA-NAASLLARLMMAFESSISK-VLDAGAVKQLLKLLG-Q-----GNEVSVRAEAAGALEALSSQSKEAKQA 269 (2102)
T ss_pred HcCCCHHHHH-HHHHHHHHHHcCChHHHHH-HHHCCCHHHHHHHHc-c-----CCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5667888888 9999999999999988866 679999999999886 2 2356899999999999999744 58
Q ss_pred hhhcCcHHHHHHhhccc---------CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCC-CHHHHHHHH
Q psy15268 79 VFEAGGLASVLLFIKQH---------GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHE-DTHISDAAL 148 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff---------~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~-D~~vv~~ac 148 (256)
|+++||+++++.++.-. +...|+ +|+|+++|+|+++ .+++|.|.+++++. |..++.++|
T Consensus 270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe----~AvwALsNIcgg~-------~~ll~~L~~ll~s~rd~~~~ada~ 338 (2102)
T PLN03200 270 IADAGGIPALINATVAPSKEFMQGEFAQALQE----NAMGALANICGGM-------SALILYLGELSESPRSPAPIADTL 338 (2102)
T ss_pred HHHCCCHHHHHHHHhCcchhhhccccchHHHH----HHHHHHHHHhCCc-------hhhHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999732 233466 9999999999997 67999999999876 999999999
Q ss_pred HHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCC-c-C---CCCCCCcccc----ccCCcc---ccccccC
Q psy15268 149 RCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPL-N-T---SLGGANVSTA----SASGTL---ATEAKAS 215 (256)
Q Consensus 149 ~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~-~-~---~~~~~~~~~~----~~~~~~---~~~~~~s 215 (256)
|+++|+..-+..+.++++ +++. .+++.|++|+.+......- . . .+-..|.-.. ..++.. .-=...+
T Consensus 339 gALayll~l~d~~~~~~~-~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~ 417 (2102)
T PLN03200 339 GALAYALMVFDSSAESTR-AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT 417 (2102)
T ss_pred hhHHHHHHhcCCchhhhh-hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC
Confidence 999999555544566677 5554 5779999999754211000 0 0 0000000000 000000 0000122
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhcC-hHHHH
Q psy15268 216 SGSVSTIVSLLSALCRGSPSITSDLLHSD-LPDAI 249 (256)
Q Consensus 216 ~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~~l 249 (256)
..........|..||.+..+.-+.+.+.+ +|.-+
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 45677888899999999999999999888 54443
No 6
>KOG0166|consensus
Probab=99.55 E-value=4e-15 Score=145.23 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=136.5
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchh
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSV 79 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~V 79 (256)
...+++..- .|||||.|+.|+.+|.++. |++.|.+|.|+++|. .. ..-+.==|+.++|||..- ....|
T Consensus 247 ~~~D~~Vl~-Da~WAlsyLsdg~ne~iq~-vi~~gvv~~LV~lL~-~~------~~~v~~PaLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 247 HSTDEEVLT-DACWALSYLTDGSNEKIQM-VIDAGVVPRLVDLLG-HS------SPKVVTPALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred hcCCHHHHH-HHHHHHHHHhcCChHHHHH-HHHccchHHHHHHHc-CC------CcccccHHHhhccceeeccHHHHHHH
Confidence 345656665 9999999999999999976 779999999999887 32 223444599999999653 44689
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.+|+++.+..++.-...+.+| +.|.|++||.+.|-...- . .....+|.|.++|+..|-++..-|+||++.++.+
T Consensus 318 i~~~~L~~l~~ll~~s~~~~ik---kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 318 INSGALPVLSNLLSSSPKESIK---KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhcChHHHHHHHhccCcchhHH---HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999988644444455 259999999999854332 2 5568899999999999999999999999999988
Q ss_pred ccCCCCCccchhccccHHHHHHHhc
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.. ++++..|++.|+++.+..||.
T Consensus 395 g~--~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 395 GT--PEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred CC--HHHHHHHHHcCCchhhhhccc
Confidence 74 799999999999999999994
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.39 E-value=2.2e-13 Score=127.43 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=139.8
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc---cccchhhh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT---REAGSVFE 81 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~---d~~~~Vl~ 81 (256)
.+||.+. -||||+.|+.||..|+... |.+.|.-+.|+++|. .+ +..+---++...|||-. ++...+++
T Consensus 255 ~D~evlv-DA~WAiSYlsDg~~E~i~a-vld~g~~~RLvElLs--~~-----sa~iqtPalR~vGNIVTG~D~QTqviI~ 325 (526)
T COG5064 255 RDPEVLV-DACWAISYLSDGPNEKIQA-VLDVGIPGRLVELLS--HE-----SAKIQTPALRSVGNIVTGSDDQTQVIIN 325 (526)
T ss_pred cCHHHHH-HHHHHHHHhccCcHHHHHH-HHhcCCcHHHHHHhc--Cc-----cccccCHHHHhhcCeeecCccceehhee
Confidence 4678888 9999999999999999976 779999999999886 33 55566678999999954 34568999
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
.|.|.++..++....-..-+ .|-|++||.--+....-. .=.+.+|.|..+|.+-|-++...||||++..+.|..
T Consensus 326 ~G~L~a~~~lLs~~ke~irK----EaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 326 CGALKAFRSLLSSPKENIRK----EACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred cccHHHHHHHhcChhhhhhh----hhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999998655444555 899999999877543322 235678999999999999999999999999999988
Q ss_pred CCCCCccchhccccHHHHHHHhcc
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+.|+.|..|++.|+++.|..+|..
T Consensus 402 ~~PD~iryLv~qG~IkpLc~~L~~ 425 (526)
T COG5064 402 NRPDIIRYLVSQGFIKPLCDLLDV 425 (526)
T ss_pred CCchHHHHHHHccchhHHHHHHhc
Confidence 889999999999999999999964
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.20 E-value=6.3e-11 Score=91.37 Aligned_cols=113 Identities=24% Similarity=0.335 Sum_probs=94.7
Q ss_pred HHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcCcHHHHHHhhcccCcccchhhhhHHHH
Q psy15268 33 VAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMA 109 (256)
Q Consensus 33 vv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~ 109 (256)
++..|.||.|++.|. .+..++.+.++|+|++++.+.+ ..+++.|+++.++.+++.....+++ .|+|
T Consensus 3 ~~~~~~i~~l~~~l~-------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~----~a~~ 71 (120)
T cd00020 3 VIQAGGLPALVSLLS-------SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK----AALW 71 (120)
T ss_pred HHHcCChHHHHHHHH-------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHH----HHHH
Confidence 358999999999887 2257999999999999998643 5688889999999999876667777 9999
Q ss_pred HHHHhcCCCCCCCC-Ch-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 110 VVSRLCSKMEPQDP-QL-PEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 110 ~vsNlCr~~~~~~~-~v-~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
++.|+|.+.++... .+ ..++|.|.++++..|.++.+.++|+|..|++
T Consensus 72 ~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 72 ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 99999998643333 33 3489999999999999999999999999863
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=2.7e-10 Score=87.82 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=87.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|++.+++... .|+|||.|+.+..|+.... .++.|++|.|++.|. .+..+++++++|+|++|+...+ ..
T Consensus 16 l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 16 LSSSDENVQR-EAAWALSNLSAGNNDNIQA-VVEAGGLPALVQLLK-------SEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred HHcCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHHCCChHHHHHHHh-------CCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4566677776 9999999999999999876 458899999999876 2368999999999999999875 34
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
+.+.|.+..++.+++.+...+++ .|.|++.|+|.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~----~a~~~l~~l~~ 120 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQK----NATGALSNLAS 120 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHH----HHHHHHHHhhC
Confidence 67899999999999988766777 99999999983
No 10
>KOG4224|consensus
Probab=98.63 E-value=8e-07 Score=84.49 Aligned_cols=195 Identities=18% Similarity=0.180 Sum_probs=140.1
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc--cchhhhcC--cHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE--AGSVFEAG--GLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~--~~~Vl~~G--~l~al 88 (256)
.|.-+|.||-- ++..+++.|+.|++|.|++.|. +++-|+.+-|-.+++||+-|. ++...++| .++++
T Consensus 186 natgaLlnmTh--s~EnRr~LV~aG~lpvLVsll~-------s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 186 NATGALLNMTH--SRENRRVLVHAGGLPVLVSLLK-------SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred HHHHHHHHhhh--hhhhhhhhhccCCchhhhhhhc-------cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 66677777754 4555667889999999999776 558999999999999999874 45677788 89999
Q ss_pred HHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccc
Q psy15268 89 LLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAP 167 (256)
Q Consensus 89 L~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~ 167 (256)
.+++|..+..++- .|.-.+.|+-..-...-+ .-...+|.+.++|++.--..+-....|+-.|+-. +-.--.
T Consensus 257 v~Lmd~~s~kvkc----qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih----plNe~l 328 (550)
T KOG4224|consen 257 VDLMDDGSDKVKC----QAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH----PLNEVL 328 (550)
T ss_pred HHHHhCCChHHHH----HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc----cCcccc
Confidence 9999988777766 555555555433222222 2245689999999877544444445677666532 223346
Q ss_pred hhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC-hH
Q psy15268 168 LAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD-LP 246 (256)
Q Consensus 168 l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~ 246 (256)
+++.|+++.||++|.- +. +-...-+..+.|..|+..|..-...+.+++ ||
T Consensus 329 I~dagfl~pLVrlL~~-~d----------------------------nEeiqchAvstLrnLAasse~n~~~i~esgAi~ 379 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRA-GD----------------------------NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIP 379 (550)
T ss_pred eecccchhHHHHHHhc-CC----------------------------chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchH
Confidence 7899999999999962 21 112344678889999988888888888888 88
Q ss_pred HHHhhhh
Q psy15268 247 DAIGCPR 253 (256)
Q Consensus 247 ~~l~~~~ 253 (256)
.-++-++
T Consensus 380 kl~eL~l 386 (550)
T KOG4224|consen 380 KLIELLL 386 (550)
T ss_pred HHHHHHh
Confidence 8776544
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.53 E-value=2e-06 Score=84.80 Aligned_cols=196 Identities=16% Similarity=0.207 Sum_probs=147.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--hh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG--SV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~--~V 79 (256)
|...+|.... .++|.|-++......... .+++++.+|.++..|. .+..++++.|+.+|.+|+...+. .+
T Consensus 86 L~h~~~~Vr~-l~l~~l~~~~~~~~~~~~-~~~~~~l~~~i~~~L~-------~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 86 LTHPSPKVRR-LALKQLGRIARHSEGAAQ-LLVDNELLPLIIQCLR-------DPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred hcCCCHHHHH-HHHHHHHHHhcCCHHHHH-HhcCccHHHHHHHHHc-------CCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 4455666666 999999999988877774 4779999999999776 34799999999999999987553 48
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHH--HHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPE--AVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~--~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+..+.+..+-..+...+..+.. .+.++++++|+.-+..-..+.+ +++.+-+.|..+|.-+.-+++-.++.++..
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~----Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRC----RVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 8888888888887653333444 5888999998764222235554 999999989999999999999999999983
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
++-.+.+.+.|++++|.++|..... . +..+.-.+...++..+.+++.+|...
T Consensus 233 ----~~g~~yL~~~gi~~~L~~~l~~~~~-d-----------------------p~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 233 ----PHGLQYLEQQGIFDKLSNLLQDSEE-D-----------------------PRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred ----hhHHHHHHhCCHHHHHHHHHhcccc-C-----------------------CcccchhhhhHHHHHHHHHhcChHHH
Confidence 4568999999999999999975321 0 11222344466788888888665544
Q ss_pred H
Q psy15268 238 S 238 (256)
Q Consensus 238 ~ 238 (256)
.
T Consensus 285 ~ 285 (503)
T PF10508_consen 285 L 285 (503)
T ss_pred H
Confidence 3
No 12
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.50 E-value=3.4e-06 Score=76.66 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=122.0
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-hhhhcC
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-SVFEAG 83 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~Vl~~G 83 (256)
++|..+- .|..++.|. .+.| .++.++.+.|+++.+.+.|. .++..+.|+|+|||.|+|..... ..++.
T Consensus 25 ~dp~i~e-~al~al~n~-aaf~-~nq~~Ir~~Ggi~lI~~lL~-------~p~~~vr~~AL~aL~Nls~~~en~~~Ik~- 93 (254)
T PF04826_consen 25 EDPFIQE-KALIALGNS-AAFP-FNQDIIRDLGGISLIGSLLN-------DPNPSVREKALNALNNLSVNDENQEQIKM- 93 (254)
T ss_pred CChHHHH-HHHHHHHhh-ccCh-hHHHHHHHcCCHHHHHHHcC-------CCChHHHHHHHHHHHhcCCChhhHHHHHH-
Confidence 4555665 889999996 4555 44566779999999998776 45889999999999999988553 23333
Q ss_pred cHHHHHHhhccc--CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 84 GLASVLLFIKQH--GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 84 ~l~alL~~ldff--~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
-+..++.-+-.. ...+|. .++..+.|++..- .....+...+|.|..+|...+.++...+.+++.+|+..
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~----agLrlL~nLtv~~-~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n---- 164 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQL----AGLRLLTNLTVTN-DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN---- 164 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHH----HHHHHHHccCCCc-chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC----
Confidence 244444433222 457788 8888999997431 11247888999999999999999999999999999986
Q ss_pred CCCccchhccccHHHHHHHhcc
Q psy15268 162 GVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
++....++.++.+..++.|+..
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred HHHHHHHHhccchhHHHHHHcc
Confidence 5678899999999999999964
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.43 E-value=4.3e-06 Score=82.53 Aligned_cols=203 Identities=16% Similarity=0.170 Sum_probs=157.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---h
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---S 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~ 78 (256)
|...++|.+- .+|++|..+++..+-.. . ..+..+.|..-|. .++..|.+.++++|+++++.... .
T Consensus 47 L~~~~~e~v~-~~~~iL~~~l~~~~~~~---l-~~~~~~~L~~gL~-------h~~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 47 LNTSNREQVE-LICDILKRLLSALSPDS---L-LPQYQPFLQRGLT-------HPSPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HhhcChHHHH-HHHHHHHHHHhccCHHH---H-HHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4445667776 99999999999664333 1 5567777777665 34789999999999999876543 4
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.+.+.+..++..+......+.+ .|.-++.++++..+.-+. .-.+.++.|.+++...|..+.-.++.++.+++..
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~----~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAK----AAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHH----HHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 77889999999999877788888 999999999976422211 1233489999999887888888899999888765
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+++..+.+.++|+++.+++.|.. .. . =....++.+|+.||. ++.-.
T Consensus 191 ---S~~~~~~~~~sgll~~ll~eL~~-dD--------------------------i---Lvqlnalell~~La~-~~~g~ 236 (503)
T PF10508_consen 191 ---SPEAAEAVVNSGLLDLLLKELDS-DD--------------------------I---LVQLNALELLSELAE-TPHGL 236 (503)
T ss_pred ---CHHHHHHHHhccHHHHHHHHhcC-cc--------------------------H---HHHHHHHHHHHHHHc-ChhHH
Confidence 67889999999999999999964 21 1 134478999999999 88888
Q ss_pred HHHHhcChHHHHhhhhc
Q psy15268 238 SDLLHSDLPDAIGCPRI 254 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~~~ 254 (256)
+-|.+.++.+.|...+.
T Consensus 237 ~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 99999998888877664
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.35 E-value=6.6e-06 Score=84.29 Aligned_cols=162 Identities=12% Similarity=0.193 Sum_probs=124.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--ch
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GS 78 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~ 78 (256)
+|+.+|++... .+.++|.++ +...+.... +...|+||.|++.|. +...|+.+.++++|-|+|-|.. ..
T Consensus 298 ~Ldr~n~elli-l~v~fLkkL-Si~~ENK~~-m~~~giV~kL~kLl~-------s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 298 CLDRENEELLI-LAVTFLKKL-SIFKENKDE-MAESGIVEKLLKLLP-------SENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred HHcCCCHHHHH-HHHHHHHHH-cCCHHHHHH-HHHcCCHHHHHHHhc-------CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 36778888777 888888775 567777755 569999999998665 4478999999999999999844 58
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLL-LRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~l-L~~~D~~vv~~ac~als~L~d 156 (256)
+++.|.++.+..++.. ...+. .++.++.|+|..-.... +.-.+++|.|.++ +.+.++++--.+.+.+..++-
T Consensus 368 mV~~GlIPkLv~LL~d--~~~~~----val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKD--PNFRE----VALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHCCCcHHHHHHhCC--CchHH----HHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 9999999999999973 23333 78999999998654333 4566899999887 556677776666777777774
Q ss_pred hccCCCCCccchhccccHHHHHHHhc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
. +...|.+++.|.++.|+++.-
T Consensus 442 ~----~rnaqlm~~g~gL~~L~~ra~ 463 (708)
T PF05804_consen 442 N----KRNAQLMCEGNGLQSLMKRAL 463 (708)
T ss_pred C----HHHHHHHHhcCcHHHHHHHHH
Confidence 4 345678888778899888864
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.13 E-value=3.6e-05 Score=70.00 Aligned_cols=169 Identities=16% Similarity=0.211 Sum_probs=127.5
Q ss_pred HhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHH
Q psy15268 34 AIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVV 111 (256)
Q Consensus 34 v~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~v 111 (256)
.+.+.+..|...|. .. .+..+.|+++.+|+|.++-.. +.+-+.||+..+..+++.....++. +|+|++
T Consensus 9 l~~~~l~~Ll~lL~-~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~----~AL~aL 78 (254)
T PF04826_consen 9 LEAQELQKLLCLLE-ST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVRE----KALNAL 78 (254)
T ss_pred cCHHHHHHHHHHHh-cC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHH----HHHHHH
Confidence 46677888888787 43 377899999999999877533 4677889999999999998788887 999999
Q ss_pred HHhcCCCCCCC-CChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCC
Q psy15268 112 SRLCSKMEPQD-PQLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSN 188 (256)
Q Consensus 112 sNlCr~~~~~~-~~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~ 188 (256)
.|+..+. +. ..++..++.++..+.+ -|..+-..+..++..++-- ++.+.++ .+.++.+++||.. |
T Consensus 79 ~Nls~~~--en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-----~~~~~~l-~~~i~~ll~LL~~--G-- 146 (254)
T PF04826_consen 79 NNLSVND--ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-----NDYHHML-ANYIPDLLSLLSS--G-- 146 (254)
T ss_pred HhcCCCh--hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-----cchhhhH-HhhHHHHHHHHHc--C--
Confidence 9997553 23 2788888888886443 3788888999999998732 2234444 3578999999963 2
Q ss_pred CCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhh
Q psy15268 189 PLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGC 251 (256)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~ 251 (256)
+..+-..++++|.+|+. +|..+++|+....+..+-.
T Consensus 147 --------------------------~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~ 182 (254)
T PF04826_consen 147 --------------------------SEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLS 182 (254)
T ss_pred --------------------------ChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHH
Confidence 11344589999999975 6888999998875544433
No 16
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.11 E-value=4.9e-05 Score=78.01 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhcCcH
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEAGGL 85 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~G~l 85 (256)
+..+..+...|.|+++-..-.. -.++.|.|+.|++.|. +...++.--+++.|+|+|-. +.+.+.+.|++
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~--kM~~~~iV~~Lv~~Ld-------r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVEL--KMVNKGIVSLLVKCLD-------RENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHH--HHHhcCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 3445588889999999654433 3569999999998776 44789999999999999865 45678999999
Q ss_pred HHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCC
Q psy15268 86 ASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVD 164 (256)
Q Consensus 86 ~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v-~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~ 164 (256)
+++..+++--.. +.++.+++++-|+.-...--...| ..++|.|..+|..+ +....++..+..|+.. ++.
T Consensus 334 ~kL~kLl~s~~~----~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d----d~~ 403 (708)
T PF05804_consen 334 EKLLKLLPSENE----DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD----DEA 403 (708)
T ss_pred HHHHHHhcCCCH----HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC----Hhh
Confidence 999999975433 344499999999986532212222 34789999999754 3445566666666653 222
Q ss_pred ccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 165 PAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 165 i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
-..+...+.++.++++|...++. ..-..++.++.+|+...... +.+.+.+
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~-----------------------------~v~~eliaL~iNLa~~~rna-qlm~~g~ 453 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEE-----------------------------EVQLELIALLINLALNKRNA-QLMCEGN 453 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCc-----------------------------cccHHHHHHHHHHhcCHHHH-HHHHhcC
Confidence 33556679999999998643221 11124667777776655444 5555544
Q ss_pred -hHHHHhhhh
Q psy15268 245 -LPDAIGCPR 253 (256)
Q Consensus 245 -l~~~l~~~~ 253 (256)
++.-+++++
T Consensus 454 gL~~L~~ra~ 463 (708)
T PF05804_consen 454 GLQSLMKRAL 463 (708)
T ss_pred cHHHHHHHHH
Confidence 666665554
No 17
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.10 E-value=6.2e-06 Score=53.99 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=34.3
Q ss_pred CchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 25 SAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 25 ~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
+|++.+. +++.|+||.|+++|. ..+.++.|+|+|||+||++
T Consensus 1 ~~~~~~~-i~~~g~i~~Lv~ll~-------~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQA-IVEAGGIPPLVQLLK-------SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHH-HHHTTHHHHHHHHTT-------SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHH-HHHcccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhC
Confidence 3566655 679999999999776 4489999999999999974
No 18
>KOG4224|consensus
Probab=98.04 E-value=7.9e-05 Score=71.19 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=117.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCC--cHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--c
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDG--AMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--G 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~g--AVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~ 77 (256)
|+..|+|.|. -++.++.||.- -+-.+.+.++.| .||.|+++.. .++..+.=||--||+||+.|.. .
T Consensus 217 l~s~d~dvqy-ycttaisnIaV--d~~~Rk~Laqaep~lv~~Lv~Lmd-------~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 217 LKSGDLDVQY-YCTTAISNIAV--DRRARKILAQAEPKLVPALVDLMD-------DGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred hccCChhHHH-HHHHHhhhhhh--hHHHHHHHHhcccchHHHHHHHHh-------CCChHHHHHHHHHHhhhcccchhhh
Confidence 4678899999 99999999974 344455677888 8999999554 3466788899999999999844 5
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC--CCC-Ch--HHHHHHHHHhhcCCCHH-HHHHHHHHH
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP--QDP-QL--PEAVEALSLLLRHEDTH-ISDAALRCF 151 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~--~~~-~v--~~~lP~L~~lL~~~D~~-vv~~ac~al 151 (256)
.|.++|+++.++.++... +-. -.+.-| -|-|+..- -+. .+ ...+-.|..+|...|.+ +--.|.-.+
T Consensus 287 eiv~ag~lP~lv~Llqs~---~~p----lilasV-aCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSP---MGP----LILASV-ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred HHHhcCCchHHHHHHhCc---chh----HHHHHH-HHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 799999999999999432 223 111122 23455433 233 33 33577788999998866 777777777
Q ss_pred HHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 152 ASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 152 s~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
-.|+.+.+ .....++++|.++.+.+|+..
T Consensus 359 rnLAasse---~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 359 RNLAASSE---HNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHHhhhhh---hhhHHHhhcCchHHHHHHHhc
Confidence 77877654 356788999999999999963
No 19
>KOG1048|consensus
Probab=97.91 E-value=0.00012 Score=74.62 Aligned_cols=207 Identities=17% Similarity=0.243 Sum_probs=155.8
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----------
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---------- 77 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---------- 77 (256)
..+|..++.||-|+.+...+.-+..-..+|-|-.|+..+.-.++-++.. .--.|+|+..|-|+|=+-..
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d-~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLD-SKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcccc-chhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 3455599999999999998888777778999999987665344433333 34689999999998643110
Q ss_pred ----------------------------------------------hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHH
Q psy15268 78 ----------------------------------------------SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVV 111 (256)
Q Consensus 78 ----------------------------------------------~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~v 111 (256)
...+.-++...|.|+. ...-..|+..+.=++
T Consensus 467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~---~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA---LSKNDNTLEASAGAL 543 (717)
T ss_pred hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH---HhcchHHHHHhhhhH
Confidence 0222234555566664 233345666888888
Q ss_pred HHhcCCCCCCCCC-------hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhccc
Q psy15268 112 SRLCSKMEPQDPQ-------LPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNA 184 (256)
Q Consensus 112 sNlCr~~~~~~~~-------v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~ 184 (256)
=|++-+..+...+ .+..+|.|..+|+.+|+.|+.+++-++..++-. -+.+.++..+.++.|++.|...
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d-----~rnk~ligk~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD-----IRNKELIGKYAIPDLVRCLPGS 618 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC-----chhhhhhhcchHHHHHHhCcCC
Confidence 9999887665432 355679999999999999999999999999854 4688899899999999999532
Q ss_pred CCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC-hHH
Q psy15268 185 AGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD-LPD 247 (256)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~ 247 (256)
++. +..+-.++..+...|-.+.+.++.-+++|++.. ++.
T Consensus 619 ~~~------------------------~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 619 GPS------------------------TSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPK 658 (717)
T ss_pred CCC------------------------cCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHH
Confidence 220 346778999999999999999999999999988 544
No 20
>KOG4199|consensus
Probab=97.68 E-value=0.00071 Score=64.21 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHHhc---------cCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--cc
Q psy15268 8 ENVLEVTARAMTYYLD---------VSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EA 76 (256)
Q Consensus 8 ~~~l~~AaraLTni~~---------~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~ 76 (256)
+.+- +++|++-.++- ---+..+.| +..|...+|.+.|. .-- ..|+---..-+|+-|+-+ ..
T Consensus 205 ~~VR-el~~a~r~l~~dDDiRV~fg~ah~hAr~i-a~e~~l~~L~Eal~-A~~-----dp~~L~~l~~tl~~lAVr~E~C 276 (461)
T KOG4199|consen 205 RTVR-ELYDAIRALLTDDDIRVVFGQAHGHARTI-AKEGILTALTEALQ-AGI-----DPDSLVSLSTTLKALAVRDEIC 276 (461)
T ss_pred HHHH-HHHHHHHHhcCCCceeeecchhhHHHHHH-HHhhhHHHHHHHHH-ccC-----CccHHHHHHHHHHHHHHHHHHH
Confidence 5566 89999887752 112234444 46778889999887 422 233333445678888765 44
Q ss_pred chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHh-hcC-CCHHHHHHHHHHHHH
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLL-LRH-EDTHISDAALRCFAS 153 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~l-L~~-~D~~vv~~ac~als~ 153 (256)
..|-+.||+..++..+|..+.+--|..-+.++.+++-+-.+-+..+- .-+..+|.+..+ ++| +||.|++.+|.|++.
T Consensus 277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI 356 (461)
T ss_pred HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 78999999999999999877666676667788888777766544443 345677888777 454 689999999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS 233 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S 233 (256)
|+=+ +||+-...++.|.-.-.+|-+..++- -......--.++.+++..|
T Consensus 357 l~LR---~pdhsa~~ie~G~a~~avqAmkahP~----------------------------~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 357 LCLR---SPDHSAKAIEAGAADLAVQAMKAHPV----------------------------AAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHhc---CcchHHHHHhcchHHHHHHHHHhCcH----------------------------HHHHHHHHHHHHHHHHHhh
Confidence 9977 78899999999999999999865421 1234445567788889999
Q ss_pred HHHHHHHHhcChHHHHhhh
Q psy15268 234 PSITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 234 ~~it~~Ll~~~l~~~l~~~ 252 (256)
.+-...++..++-+-|..+
T Consensus 406 ~~~~~~~l~~GiE~Li~~A 424 (461)
T KOG4199|consen 406 AENRTILLANGIEKLIRTA 424 (461)
T ss_pred hhccchHHhccHHHHHHHH
Confidence 9999999888877766654
No 21
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.14 E-value=0.00018 Score=49.47 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 106 SAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
.|.|.+.+++...+... +++.+++|.|..+|..++++|...|||||..|
T Consensus 6 ~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 89999999887754444 48999999999999999999999999999764
No 22
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.11 E-value=0.00023 Score=46.46 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=33.3
Q ss_pred ccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 75 EAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 75 ~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
+...|+++|+++++++++......+|+ .|.|++.|+|+
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~----~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQE----EAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHH----HHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHH----HHHHHHHHHhC
Confidence 446799999999999999966677787 99999999986
No 23
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.07 E-value=0.00065 Score=46.67 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Q psy15268 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELI 71 (256)
Q Consensus 9 ~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~I 71 (256)
... .|+|+|-++++..++..+. .....+|.|+..|. . +..+|.+.|.|+||+|
T Consensus 3 vR~-~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~-d------~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRR-AAAWALGRLAEGCPELLQP--YLPELLPALIPLLQ-D------DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHH-HHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTT-S------SSHHHHHHHHHHHHCH
T ss_pred HHH-HHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHc-C------CCHHHHHHHHHHHhcC
Confidence 344 8999999999999999865 46789999998886 2 2459999999999986
No 24
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.94 E-value=0.0023 Score=40.56 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 32 IVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 32 ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
.+++.|++|.|++.|. ..+.++.++++|+|.||+.
T Consensus 7 ~i~~~g~i~~L~~ll~-------~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLK-------SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHcC
Confidence 3669999999999765 3378999999999999973
No 25
>KOG4500|consensus
Probab=96.62 E-value=0.0083 Score=58.69 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=80.5
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHH---HHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchh
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRI---VAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSV 79 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~i---vv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~V 79 (256)
+.+.+..+++.|+..+. .++-+-..+ -++.|++..|.+ .+ ++++.+|-|||-.+|||||-| .++++
T Consensus 54 ~~~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq-----~p--sS~d~ev~~Q~~RaLgNiCydn~E~R~a~ 125 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQ-----TP--SSPDTEVHEQCFRALGNICYDNNENRAAF 125 (604)
T ss_pred ccchhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHh-----CC--CCCcccHHHHHHHHHhhhhccCchhHHHH
Confidence 45666668888888877 222222122 234455555544 33 466899999999999999987 44689
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
++.||-.-++..++ -.|..-.|... ++.-..-.|.+- +-|+
T Consensus 126 ~~lgGaqivid~L~-------------------~~cs~d~~ane~~~~v~~g~l~Ny------------------~l~~- 167 (604)
T KOG4500|consen 126 FNLGGAQIVIDVLK-------------------PYCSKDNPANEEYSAVAFGVLHNY------------------ILDS- 167 (604)
T ss_pred HhcCCceehHhhhc-------------------cccccCCccHHHHHHHHHHHHHHh------------------hCCc-
Confidence 99999776666554 35655555443 444444444432 2222
Q ss_pred cCCCCCccchhccccHHHHHHHhcc
Q psy15268 159 TRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 159 ~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.+.-..+++.|+++.|+.++.-
T Consensus 168 ---~~l~aq~~~~gVl~tL~~~~~I 189 (604)
T KOG4500|consen 168 ---RELRAQVADAGVLNTLAITYWI 189 (604)
T ss_pred ---HHHHHHHHhcccHHHHHHHhhc
Confidence 1233457788888888888864
No 26
>PRK09687 putative lyase; Provisional
Probab=96.50 E-value=0.031 Score=51.36 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR 74 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d 74 (256)
.+.+|..-. .|+|+|..+-+--..+. .+. |.|...+. . -+..+|..+++.+||++...
T Consensus 64 ~~~d~~vR~-~A~~aLg~lg~~~~~~~-~a~------~~L~~l~~-~-----D~d~~VR~~A~~aLG~~~~~ 121 (280)
T PRK09687 64 SSKNPIERD-IGADILSQLGMAKRCQD-NVF------NILNNLAL-E-----DKSACVRASAINATGHRCKK 121 (280)
T ss_pred hCCCHHHHH-HHHHHHHhcCCCccchH-HHH------HHHHHHHh-c-----CCCHHHHHHHHHHHhccccc
Confidence 455777777 89999999865221123 222 67776544 2 33678888888888888544
No 27
>KOG1048|consensus
Probab=96.48 E-value=0.0075 Score=61.90 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=117.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA----- 76 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~----- 76 (256)
|+..+|..|- .||-=|-.+.=+..+--.. |-.-|.||.||.+|. ....+|--|+.|||+|+.=...
T Consensus 242 L~~q~~~~qs-naaaylQHlcfgd~~ik~~-vrqlggI~kLv~Ll~-------~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 242 LMSQDPSVQS-NAAAYLQHLCFGDNKIKSR-VRQLGGIPKLVALLD-------HRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred HhccChhhhH-HHHHHHHHHHhhhHHHHHH-HHHhccHHHHHHHhc-------CCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4445666666 7776676777666655555 568999999999886 4478999999999999965422
Q ss_pred chhhhcCcHHHHHHhhcccC-cccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh--cCC------------CH
Q psy15268 77 GSVFEAGGLASVLLFIKQHG-HSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL--RHE------------DT 141 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~-~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL--~~~------------D~ 141 (256)
-+|-+.||+..++..++.-. -.+.. +++-++-|+-.+-.-.+..+.+++++|.+.+ -|. |+
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e----~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRE----LITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHH----HHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccc
Confidence 27999999999999997432 23333 4555555776552122237999999998763 233 68
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhc-cccHHHHHHHhcc
Q psy15268 142 HISDAALRCFASLSDRFTRRGVDPAPLAQ-HGLASELLIRLSN 183 (256)
Q Consensus 142 ~vv~~ac~als~L~d~~~~~~~~i~~l~~-~glv~~Lv~LL~~ 183 (256)
.|.-++--||-.++... .|.-+.+-+ .|+|..|+..+.+
T Consensus 389 ~vf~n~tgcLRNlSs~~---~eaR~~mr~c~GLIdaL~~~iq~ 428 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAG---QEAREQMRECDGLIDALLFSIQT 428 (717)
T ss_pred eeeehhhhhhccccchh---HHHHHHHhhccchHHHHHHHHHH
Confidence 89999999999888642 233344433 4999999999975
No 28
>PRK09687 putative lyase; Provisional
Probab=96.43 E-value=0.1 Score=48.06 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=75.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|.+.++.... .|+|+|-.+=+ ..+++.+.+ |. .. .+.++...++|+|+.|-..... .
T Consensus 32 L~d~d~~vR~-~A~~aL~~~~~------------~~~~~~l~~-ll-~~-----~d~~vR~~A~~aLg~lg~~~~~---~ 88 (280)
T PRK09687 32 LDDHNSLKRI-SSIRVLQLRGG------------QDVFRLAIE-LC-SS-----KNPIERDIGADILSQLGMAKRC---Q 88 (280)
T ss_pred HhCCCHHHHH-HHHHHHHhcCc------------chHHHHHHH-HH-hC-----CCHHHHHHHHHHHHhcCCCccc---h
Confidence 4456666666 88888875532 122345555 44 23 3789999999999998442211 1
Q ss_pred cCcHHHHHHh-hcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 82 AGGLASVLLF-IKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 82 ~G~l~alL~~-ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.-.+..+... ++.....+.+ .|+.++.++|..-.. ...++++.|...+.++|.+|...+.++|.++.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~----~A~~aLG~~~~~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRA----SAINATGHRCKKNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHH----HHHHHHhcccccccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 1223333333 2223344555 889999998854322 23456666767777888888888888886554
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.40 E-value=0.061 Score=52.11 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=115.0
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGG 84 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~ 84 (256)
++++.-- .+--++..+.+..|+...- ++..|.+-|. .+...+..-|+.+|.+|.... +. .-.
T Consensus 54 ~~~~~Kr-l~yl~l~~~~~~~~~~~~l------~~n~l~kdl~-------~~n~~~~~lAL~~l~~i~~~~---~~-~~l 115 (526)
T PF01602_consen 54 KDLELKR-LGYLYLSLYLHEDPELLIL------IINSLQKDLN-------SPNPYIRGLALRTLSNIRTPE---MA-EPL 115 (526)
T ss_dssp SSHHHHH-HHHHHHHHHTTTSHHHHHH------HHHHHHHHHC-------SSSHHHHHHHHHHHHHH-SHH---HH-HHH
T ss_pred CCHHHHH-HHHHHHHHHhhcchhHHHH------HHHHHHHhhc-------CCCHHHHHHHHhhhhhhcccc---hh-hHH
Confidence 3344333 4445667777777774422 3456666555 346778899999999997432 22 223
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHH-HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCC
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPE-AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGV 163 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~-~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~ 163 (256)
+..+...+......+.| +|+-++.++++..| ..+++ ++|.|.++|..+|+.|+..|+.++..+ . .++
T Consensus 116 ~~~v~~ll~~~~~~VRk----~A~~~l~~i~~~~p---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~---~~~ 183 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRK----KAALALLKIYRKDP---DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--K---CND 183 (526)
T ss_dssp HHHHHHHHHSSSHHHHH----HHHHHHHHHHHHCH---CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--H---CTH
T ss_pred HHHHHHHhcCCchHHHH----HHHHHHHHHhccCH---HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--c---cCc
Confidence 56667777666667777 99999999998732 25565 799999999999999999999999999 1 112
Q ss_pred CccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 164 DPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 164 ~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+...-+-+.+++.|.+++.. .+|-....++++|..+++..+...
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~------------------------------~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSD------------------------------PDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTC------------------------------CSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred chhhhhHHHHHHHhhhcccc------------------------------cchHHHHHHHHHHHhcccCChhhh
Confidence 22112223555555555521 244567788888888888888877
No 30
>KOG4199|consensus
Probab=96.23 E-value=0.12 Score=49.51 Aligned_cols=161 Identities=16% Similarity=0.350 Sum_probs=111.0
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcC
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAG 83 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G 83 (256)
+|+..- .++-+|--++ +..|.... +++.|.+..|.+.+. ... +-....++-||+..|..|+|... +.|++.|
T Consensus 255 dp~~L~-~l~~tl~~lA-Vr~E~C~~-I~e~GGl~tl~~~i~-d~n--~~~~r~l~k~~lslLralAG~DsvKs~IV~~g 328 (461)
T KOG4199|consen 255 DPDSLV-SLSTTLKALA-VRDEICKS-IAESGGLDTLLRCID-DSN--EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKG 328 (461)
T ss_pred CccHHH-HHHHHHHHHH-HHHHHHHH-HHHccCHHHHHHHHh-hhc--hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhc
Confidence 366666 7777777766 34555557 469999999998776 211 12345689999999999999755 4799999
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHH--HHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhcc
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPE--AVEALSLLLRHE-DTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~--~lP~L~~lL~~~-D~~vv~~ac~als~L~d~~~ 159 (256)
|++.+.+..--|+...|. ...++.+++-+|-++|.... .+.. +--++..+-.|. -..|--++||.+-.++-+
T Consensus 329 g~~~ii~l~~~h~~~p~V--i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-- 404 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLV--IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-- 404 (461)
T ss_pred ChHHHHHHHHHcCCChHH--HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh--
Confidence 999999988777655443 44789999999988744332 2211 111222222344 466888999999999987
Q ss_pred CCCCCccchhccccHHHH
Q psy15268 160 RRGVDPAPLAQHGLASEL 177 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~L 177 (256)
..+.=..+++.|+=.-+
T Consensus 405 -s~~~~~~~l~~GiE~Li 421 (461)
T KOG4199|consen 405 -SAENRTILLANGIEKLI 421 (461)
T ss_pred -hhhccchHHhccHHHHH
Confidence 34666778888853333
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.02 E-value=0.022 Score=41.74 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=62.9
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCC
Q psy15268 39 MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKM 118 (256)
Q Consensus 39 Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~ 118 (256)
||.|++.|. . .++.++...++++|+++-.. ..+..+..+++.....+++ .|.|.+.++
T Consensus 1 i~~L~~~l~-~-----~~~~~vr~~a~~~L~~~~~~--------~~~~~L~~~l~d~~~~vr~----~a~~aL~~i---- 58 (88)
T PF13646_consen 1 IPALLQLLQ-N-----DPDPQVRAEAARALGELGDP--------EAIPALIELLKDEDPMVRR----AAARALGRI---- 58 (88)
T ss_dssp HHHHHHHHH-T-----SSSHHHHHHHHHHHHCCTHH--------HHHHHHHHHHTSSSHHHHH----HHHHHHHCC----
T ss_pred CHHHHHHHh-c-----CCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHHcCCCHHHHH----HHHHHHHHh----
Confidence 688999885 2 44789999999999965322 3477777888655566777 899988865
Q ss_pred CCCCCChHHHHHHHHHhhcCCCH-HHHHHHHHHHH
Q psy15268 119 EPQDPQLPEAVEALSLLLRHEDT-HISDAALRCFA 152 (256)
Q Consensus 119 ~~~~~~v~~~lP~L~~lL~~~D~-~vv~~ac~als 152 (256)
.-.+++|.|..++..++. .|...|.++++
T Consensus 59 -----~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 -----GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 136789999999887654 45677777763
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.84 E-value=0.036 Score=53.68 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
+.||..+- .|-|+|.++. +|+-.+.+ +|.+.+.|. .+...|+.-|+-++.+|.+..|+.+-..
T Consensus 90 ~~n~~~~~-lAL~~l~~i~--~~~~~~~l------~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~~~~~- 152 (526)
T PF01602_consen 90 SPNPYIRG-LALRTLSNIR--TPEMAEPL------IPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDLVEDE- 152 (526)
T ss_dssp SSSHHHHH-HHHHHHHHH---SHHHHHHH------HHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCCHHGG-
T ss_pred CCCHHHHH-HHHhhhhhhc--ccchhhHH------HHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHHHHHH-
Confidence 45666666 8888998887 46655432 366666554 2356899999999999999888866555
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
-+..+.+.++.....++. .|+..+..+ +.++.. ..+...++.|.+++...|+.+...+...+.+++....
T Consensus 153 ~~~~l~~lL~d~~~~V~~----~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-- 224 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVS----AALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-- 224 (526)
T ss_dssp HHHHHHHHTTHSSHHHHH----HHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH--
T ss_pred HHHHHhhhccCCcchhHH----HHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh--
Confidence 677777777666666666 888777777 222222 3577777888888888888888888888887764311
Q ss_pred CCCccchhccccHHHHHHHhc
Q psy15268 162 GVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+..+. ..+++.+..+|.
T Consensus 225 -~~~~~---~~~i~~l~~~l~ 241 (526)
T PF01602_consen 225 -EDADK---NRIIEPLLNLLQ 241 (526)
T ss_dssp -HHHHH---HHHHHHHHHHHH
T ss_pred -hhhhH---HHHHHHHHHHhh
Confidence 11100 456666666665
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.82 E-value=0.065 Score=49.55 Aligned_cols=203 Identities=14% Similarity=0.126 Sum_probs=134.4
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHh-----CCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAI-----DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-- 77 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~-----~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-- 77 (256)
+++|.+. -.-.-+..+++..|+....+... ......|.+.|. +++.-+.+++...|..+...++.
T Consensus 69 ~~~d~v~-yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-------~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 69 SNDDTVQ-YVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-------RNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp --HHHHH-HHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--------SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred CcHHHHH-HHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHcCCccc
Confidence 4566777 77777888888888777543321 125677776443 44788999999999999776553
Q ss_pred hhhhcCcHHHHHHhhcccC----cccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhh-------cCCCHHHHH
Q psy15268 78 SVFEAGGLASVLLFIKQHG----HSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLL-------RHEDTHISD 145 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~----~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL-------~~~D~~vv~ 145 (256)
.-...+.+..+++++.... ...|. .|+..+.++.|.+.-.. +.=.+.++.|..+| +..+.++.=
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~----~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQY----IAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---H----HHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHH----HHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 2222577788888886421 23344 89999999998754333 22267777777777 234677888
Q ss_pred HHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHH
Q psy15268 146 AALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSL 225 (256)
Q Consensus 146 ~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 225 (256)
.++.|+--++ | +++-.+.+.+.++++.|++++..+ ..--.+.-++.+
T Consensus 217 ~~ll~lWlLS--F--~~~~~~~~~~~~~i~~L~~i~~~~-----------------------------~KEKvvRv~la~ 263 (312)
T PF03224_consen 217 QALLCLWLLS--F--EPEIAEELNKKYLIPLLADILKDS-----------------------------IKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHHHHHT--T--SHHHHHHHHTTSHHHHHHHHHHH-------------------------------SHHHHHHHHHH
T ss_pred HHHHHHHHHh--c--CHHHHHHHhccchHHHHHHHHHhc-----------------------------ccchHHHHHHHH
Confidence 8888877776 4 346678888899999999999742 122455667888
Q ss_pred HHHHhcCCHH-HHHHHHhcChHHHHhhh
Q psy15268 226 LSALCRGSPS-ITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 226 Ls~l~~~S~~-it~~Ll~~~l~~~l~~~ 252 (256)
|.+|+...++ ....++..+++.++..+
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 8899888886 77788888888877654
No 34
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.59 E-value=0.016 Score=36.53 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 128 AVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 128 ~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
++|.|.++++++|++++..+||++.+|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6999999999999999999999999986
No 35
>KOG2023|consensus
Probab=95.45 E-value=0.052 Score=55.55 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHH-------Hh-------CCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIV-------AI-------DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~iv-------v~-------~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
+.+.+.=--||.++-+..| -.+.+| +. ....|.||+.|. ++.-...|-|+.||.||+.
T Consensus 86 ~~~~yiKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~-------s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLD-------SPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHHHHhc-------CCcccccchhHHHHHHHHh
Confidence 3333455667777777666 333321 01 234688998776 4466789999999999999
Q ss_pred cccch----hhhcCcHHHHH-HhhcccCcccchhhhhHHHHHHHHhcCC----CCCCCC--ChHHHHHHHHHhhcCCCHH
Q psy15268 74 REAGS----VFEAGGLASVL-LFIKQHGHSVHKDTLHSAMAVVSRLCSK----MEPQDP--QLPEAVEALSLLLRHEDTH 142 (256)
Q Consensus 74 d~~~~----Vl~~G~l~alL-~~ldff~~~~qr~~l~~a~~~vsNlCr~----~~~~~~--~v~~~lP~L~~lL~~~D~~ 142 (256)
|.+.. +. ..-+.+++ .|+.||..+.-+ +| .-+=-|-| ..+... .+-..+..|-.+-+-+|++
T Consensus 158 Dsa~~lds~~~-~rpl~~mipkfl~f~~h~spk--iR----s~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 158 DSAQFLDSDVL-TRPLNIMIPKFLQFFKHPSPK--IR----SHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred hhHHHHhhhcc-cCchHHhHHHHHHHHhCCChh--HH----HHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHH
Confidence 97742 33 34455554 466677654433 11 22323333 222222 5777788877777788999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccchhcc--ccHHHHHHHhc
Q psy15268 143 ISDAALRCFASLSDRFTRRGVDPAPLAQH--GLASELLIRLS 182 (256)
Q Consensus 143 vv~~ac~als~L~d~~~~~~~~i~~l~~~--glv~~Lv~LL~ 182 (256)
|..++|.+|.+|.|- +++.++.| ++++-++++-.
T Consensus 231 VRk~vC~alv~Llev------r~dkl~phl~~IveyML~~tq 266 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEV------RPDKLVPHLDNIVEYMLQRTQ 266 (885)
T ss_pred HHHHHHHHHHHHHHh------cHHhcccchHHHHHHHHHHcc
Confidence 999999999999985 45555544 56666665543
No 36
>KOG2160|consensus
Probab=95.21 E-value=0.16 Score=48.31 Aligned_cols=134 Identities=18% Similarity=0.216 Sum_probs=97.6
Q ss_pred hCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhhhcCcHHHHHHhhcccC-cccchhhhhHHHHH
Q psy15268 35 IDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVFEAGGLASVLLFIKQHG-HSVHKDTLHSAMAV 110 (256)
Q Consensus 35 ~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl~~G~l~alL~~ldff~-~~~qr~~l~~a~~~ 110 (256)
..|..+.+...|. .+.-.|+|-|.|++|-+++-.|. .|++.|++..++..++--. .++-. +|+-.
T Consensus 122 ~~ggl~~ll~~l~-------~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~----kaL~A 190 (342)
T KOG2160|consen 122 SLGGLVPLLGYLE-------NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRT----KALFA 190 (342)
T ss_pred hccCHHHHHHHhc-------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHH----HHHHH
Confidence 5555555555554 44789999999999999999996 6999999999999998433 33434 99999
Q ss_pred HHHhcCCCCCCC--CChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 111 VSRLCSKMEPQD--PQLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 111 vsNlCr~~~~~~--~~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++++-|+-+|.- |.--.-+-.|..+++. .+.+..-.|..=+++|...-.. .-+.....|+...++.+..
T Consensus 191 issLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s---~~d~~~~~~f~~~~~~l~~ 263 (342)
T KOG2160|consen 191 ISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS---DEDIASSLGFQRVLENLIS 263 (342)
T ss_pred HHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh---hhhHHHHhhhhHHHHHHhh
Confidence 999999976644 3333337778888887 7888888999999999977332 2223344465555555554
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.02 E-value=0.035 Score=51.36 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=106.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~V 79 (256)
|+..+.-.+. .|++.|+.++...+..... . ..++++.|.+.|. ... +.+..++.+-|+++|.++.+. ++..+
T Consensus 114 l~~~D~~i~~-~a~~iLt~Ll~~~~~~~~~-~-~~~~l~~ll~~L~-~~l--~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 114 LDRNDSFIQL-KAAFILTSLLSQGPKRSEK-L-VKEALPKLLQWLS-SQL--SSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp -S-SSHHHHH-HHHHHHHHHHTSTTT--HH-H-HHHHHHHHHHHHH--TT---HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred hcCCCHHHHH-HHHHHHHHHHHcCCccccc-h-HHHHHHHHHHHHH-Hhh--cCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 3455666666 9999999999988887754 2 3678888888777 311 223345557788888888765 55678
Q ss_pred hhcCcHHHHHHhhc-----ccCcccch--hhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhc-CCCHHHHHHHHHHH
Q psy15268 80 FEAGGLASVLLFIK-----QHGHSVHK--DTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLR-HEDTHISDAALRCF 151 (256)
Q Consensus 80 l~~G~l~alL~~ld-----ff~~~~qr--~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~-~~D~~vv~~ac~al 151 (256)
.++|++..+...++ -.+...|- .++ -++|.+|--..... ...-..++|.|.++++ ..-.+|+--+..+|
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l-l~lWlLSF~~~~~~--~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQAL-LCLWLLSFEPEIAE--ELNKKYLIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHH-HHHHHHTTSHHHHH--HHHTTSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHH-HHHHHHhcCHHHHH--HHhccchHHHHHHHHHhcccchHHHHHHHHH
Confidence 89999999999993 22333332 111 47787763221110 0011228999999976 45778999999999
Q ss_pred HHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 152 ASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 152 s~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-.+.+.-. .+-++.+++.|+++-+..|..
T Consensus 265 ~Nl~~~~~--~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 265 RNLLSKAP--KSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHTTSSSS--TTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHhccH--HHHHHHHHHccHHHHHHHHhc
Confidence 99998742 236778888887766666653
No 38
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.79 E-value=0.35 Score=50.87 Aligned_cols=209 Identities=16% Similarity=0.170 Sum_probs=118.5
Q ss_pred HHHhccCchhhhHHHHhCCcHHHHHHHhhcccCC-CCCCcHHHHHHHHHHHHHHhccccc--------hhhhcC----cH
Q psy15268 19 TYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGI-ASRTSKDLAEQCIKVLELICTREAG--------SVFEAG----GL 85 (256)
Q Consensus 19 Tni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~-~~~~~~DlaEQal~aLe~Is~d~~~--------~Vl~~G----~l 85 (256)
-+++--.+..-+. .++-||++.|.+.|.+..+- .+..-.+++||.+..+|-|-.+-.. .....| ..
T Consensus 146 L~~c~Kv~~NR~~-Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~ 224 (802)
T PF13764_consen 146 LRYCCKVKVNRRA-LLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDK 224 (802)
T ss_pred HHHHHhhHHHHHH-HHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccH
Confidence 3333344555544 56899999999999744430 0112379999999999999766221 112222 44
Q ss_pred HHHHHhhcccCccc---chhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhcc
Q psy15268 86 ASVLLFIKQHGHSV---HKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 86 ~alL~~ldff~~~~---qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~~ 159 (256)
..+-.|++.-.... ....+...+.++.+++.+.+.+-. .|.-.-|.| ++=.. +++.=-.-...||+.++++..
T Consensus 225 ~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~ 303 (802)
T PF13764_consen 225 EQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIP 303 (802)
T ss_pred HHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHhc-ChhhcccccCchHHHHHHHHHHHHhcCC
Confidence 44444444322221 123455677788888887644433 444444444 33111 111111344889999999875
Q ss_pred CCC--CC-ccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 160 RRG--VD-PAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 160 ~~~--~~-i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
++. .+ -+.+++.|+++..++.|..+-... .+. ++++ =...++-.+.--++++|.-||+|.+.
T Consensus 304 ~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~----------~~~---~s~e-Wk~~l~~psLp~iL~lL~GLa~gh~~- 368 (802)
T PF13764_consen 304 NNSNGNRLKDKILESGIVQDAIDYLLKHFPSL----------KNT---DSPE-WKEFLSRPSLPYILRLLRGLARGHEP- 368 (802)
T ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHhCccc----------ccC---CCHH-HHHHhcCCcHHHHHHHHHHHHhcCHH-
Confidence 433 23 456778899999999996532210 000 0110 01223345566899999999999665
Q ss_pred HHHHHhcC
Q psy15268 237 TSDLLHSD 244 (256)
Q Consensus 237 t~~Ll~~~ 244 (256)
++.++..+
T Consensus 369 tQ~~~~~~ 376 (802)
T PF13764_consen 369 TQLLIAEQ 376 (802)
T ss_pred HHHHHHhh
Confidence 44445444
No 39
>KOG2160|consensus
Probab=94.71 E-value=0.62 Score=44.36 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=130.4
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcC
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAG 83 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G 83 (256)
+..+-+.|||.|+..+.-+|..-.. |.+.|+.+.|...|. ..+..++.-+|+-|+...-+.++ ...++.+
T Consensus 137 ~~~lR~~Aa~Vigt~~qNNP~~Qe~-v~E~~~L~~Ll~~ls------~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 137 DAELRELAARVIGTAVQNNPKSQEQ-VIELGALSKLLKILS------SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHH-HHHcccHHHHHHHHc------cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 3444459999999999999999866 779999999998776 34478888899999988888766 3688999
Q ss_pred cHHHHHHhhccc--CcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHH-HHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 84 GLASVLLFIKQH--GHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEAL-SLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 84 ~l~alL~~ldff--~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L-~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
|...+..-+.-. ..-.|| +++..++++-........ .-..-+|.. .++....|.++-+.+..++..+..-+.
T Consensus 210 G~~~L~~vl~~~~~~~~lkr----K~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 210 GYQVLRDVLQSNNTSVKLKR----KALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred CHHHHHHHHHcCCcchHHHH----HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 988888877653 344567 999999999877644332 222223332 344556677888888888777776654
Q ss_pred CCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHH
Q psy15268 160 RRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITS 238 (256)
Q Consensus 160 ~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~ 238 (256)
...+....+... .++++.++++..+ .....-..+..-+-..|.-.|.+-+
T Consensus 286 ~~~~~~~~~~~l~e~l~~~~q~~~~~-----------------------------~~~~~e~~l~~~l~~~~~e~~~~~~ 336 (342)
T KOG2160|consen 286 TRKELFVSLLNLEELLKSLIQIISDH-----------------------------AALEEERQLVNSLWEICGEVPSILR 336 (342)
T ss_pred hcchhhhhhhhHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 322222222222 3566666666421 1113334566666777777666666
Q ss_pred HHHh
Q psy15268 239 DLLH 242 (256)
Q Consensus 239 ~Ll~ 242 (256)
+++.
T Consensus 337 ~~~~ 340 (342)
T KOG2160|consen 337 KLLG 340 (342)
T ss_pred HHhc
Confidence 5543
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=94.70 E-value=0.94 Score=47.37 Aligned_cols=136 Identities=8% Similarity=0.068 Sum_probs=97.2
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch-hhh
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS-VFE 81 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~-Vl~ 81 (256)
.+.+|-.-- .||-|+..+....|+-. .+.|-++.|.++|. -++..|.-.|+.+|-.|..+.|+. -+.
T Consensus 150 ~D~~pYVRK-tAalai~Kly~~~pelv----~~~~~~~~L~~LL~-------D~dp~Vv~nAl~aL~eI~~~~~~~l~l~ 217 (746)
T PTZ00429 150 ADPDPYVRK-TAAMGLGKLFHDDMQLF----YQQDFKKDLVELLN-------DNNPVVASNAAAIVCEVNDYGSEKIESS 217 (746)
T ss_pred cCCCHHHHH-HHHHHHHHHHhhCcccc----cccchHHHHHHHhc-------CCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence 344544444 88999999998888643 25677788887554 235678899999999998776643 244
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
.+.+..++..+..++.-.|- ..+-++ |+..|..+....+++..+...|+|..+-|+=.|+.++.++...
T Consensus 218 ~~~~~~Ll~~L~e~~EW~Qi----~IL~lL---~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 218 NEWVNRLVYHLPECNEWGQL----YILELL---AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHhhcCChHHHH----HHHHHH---HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 55566677777666666666 444444 4454433346778888888889999999999999999999864
No 41
>KOG0168|consensus
Probab=94.37 E-value=0.07 Score=55.82 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=66.5
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC--CC----CChHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhh
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP--QD----PQLPEAVEALSLLLRHE-DTHISDAALRCFASLSD 156 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~--~~----~~v~~~lP~L~~lL~~~-D~~vv~~ac~als~L~d 156 (256)
-+..+|+-+.-.+-..| .+..+.-+|..... .+ +.++.++|.|..||+|+ ..+|.-.||+|+.|++|
T Consensus 168 k~kkLL~gL~~~~Des~------Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQ------QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHHhccccCChHH------HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 45555555543321122 24455567764322 11 47999999999999987 79999999999999999
Q ss_pred hccCCCCCccchhccccHHHHHHHhc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-. |.-...++++|.||-|++.|.
T Consensus 242 vl---P~S~a~vV~~~aIPvl~~kL~ 264 (1051)
T KOG0168|consen 242 VL---PRSSAIVVDEHAIPVLLEKLL 264 (1051)
T ss_pred hc---cchhheeecccchHHHHHhhh
Confidence 96 678999999999999998875
No 42
>KOG2171|consensus
Probab=94.09 E-value=0.49 Score=50.88 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=108.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhh---hcCcHHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVF---EAGGLASVL 89 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl---~~G~l~alL 89 (256)
.|-.||.-+.||.+++... .-...+|..++.|. -+...|.--|+.|+|.+|.|.+..+- ..-.+.+++
T Consensus 367 AaL~Als~i~EGc~~~m~~--~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 367 AALLALSVIAEGCSDVMIG--NLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHcccHHHHHH--HHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHH
Confidence 6678999999999999865 24666788887666 56899999999999999999665333 334555677
Q ss_pred Hhhccc-CcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHH-HHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCc
Q psy15268 90 LFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVE-ALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDP 165 (256)
Q Consensus 90 ~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP-~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i 165 (256)
.-+|.+ +..+|. .|...+-|.--+-+.+- +++...+. -|..++++.-+.|.|.+..++..++|.. .+++
T Consensus 438 ~~ld~~~~~rV~a----hAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA---~~~F 510 (1075)
T KOG2171|consen 438 ALLDSTQNVRVQA----HAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA---QEKF 510 (1075)
T ss_pred HHhcccCchHHHH----HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---hhhh
Confidence 777755 345666 56666666543332221 25555554 4444678888999999999999999984 3445
Q ss_pred cchhccccHHHHHHHhcccC
Q psy15268 166 APLAQHGLASELLIRLSNAA 185 (256)
Q Consensus 166 ~~l~~~glv~~Lv~LL~~~~ 185 (256)
.+-++ -+.+.|.+.|.+..
T Consensus 511 ~pY~d-~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 511 IPYFD-RLMPLLKNFLQNAD 529 (1075)
T ss_pred HhHHH-HHHHHHHHHHhCCC
Confidence 44443 46677777776543
No 43
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.81 E-value=0.14 Score=31.39 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 128 AVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 128 ~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++|.+.++++.++++|...|++||..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999998863
No 44
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.68 E-value=0.38 Score=35.08 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=53.5
Q ss_pred HHHHHHhh-cccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCC
Q psy15268 85 LASVLLFI-KQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGV 163 (256)
Q Consensus 85 l~alL~~l-dff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~ 163 (256)
++.++..+ ......+++ .|++++.++ .-.+++|.|..+++++|+.|...|++++.++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~----~a~~~L~~~---------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRA----EAARALGEL---------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHH----HHHHHHHCC---------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHH----HHHHHHHHc---------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 45677777 433445555 788877733 234889999999999999999999999998843
Q ss_pred CccchhccccHHHHHHHhcc
Q psy15268 164 DPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 164 ~i~~l~~~glv~~Lv~LL~~ 183 (256)
...++.|.+++.+
T Consensus 61 -------~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 61 -------PEAIPALIKLLQD 73 (88)
T ss_dssp -------HHTHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHcC
Confidence 3467888888853
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.54 E-value=0.25 Score=42.85 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcCc
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAGG 84 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G~ 84 (256)
.-+.- .||.++..++......... .....+|.|.+++. .+..-+++.|..+|..|....+ ..++
T Consensus 67 s~v~~-~A~~~l~~l~~~l~~~~~~--~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~~~---- 132 (228)
T PF12348_consen 67 SKVSK-TACQLLSDLARQLGSHFEP--YADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPKIL---- 132 (228)
T ss_dssp --HHH-HHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--HHH----
T ss_pred HHHHH-HHHHHHHHHHHHHhHhHHH--HHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHHHH----
Confidence 34455 8999999999988887754 24567899998887 2357899999999999988654 1111
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC-CC-C----ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP-QD-P----QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~-~~-~----~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
...+......-+ ...| ..++-.+..+....+. .+ . .+..+.|.+...+.-.|++|.+.|-.+|..+...+
T Consensus 133 ~~~l~~~~~~Kn-~~vR---~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 133 LEILSQGLKSKN-PQVR---EECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHTT-S--HHHH---HHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHH---HHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111222222212 2233 1344445566666551 22 1 25789999999999999999999999999987765
No 46
>KOG1241|consensus
Probab=93.28 E-value=2.3 Score=44.43 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=84.1
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----hhhhcCcHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG----SVFEAGGLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~----~Vl~~G~l~al 88 (256)
.|.-||--++...-+.. ....+|.+=+++. .++-.=.|-++-|+|-| -++|. .=+-.++++.+
T Consensus 345 AAg~CL~l~A~~~~D~I-----v~~Vl~Fiee~i~-------~pdwr~reaavmAFGSI-l~gp~~~~Lt~iV~qalp~i 411 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGDDI-----VPHVLPFIEENIQ-------NPDWRNREAAVMAFGSI-LEGPEPDKLTPIVIQALPSI 411 (859)
T ss_pred HHHHHHHHHHHHhcccc-----hhhhHHHHHHhcC-------CcchhhhhHHHHHHHhh-hcCCchhhhhHHHhhhhHHH
Confidence 45556655554222211 1244444444554 44566677788888887 33443 23456788888
Q ss_pred HHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC---ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 89 LLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP---QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 89 L~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~---~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+..+......+-+ ++-|++-+.|...+..-- +....++.|.+-| ++.|+|..++||+|..|+|..
T Consensus 412 i~lm~D~sl~Vkd----TaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 412 INLMSDPSLWVKD----TAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAA 479 (859)
T ss_pred HHHhcCchhhhcc----hHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHH
Confidence 8888755556666 999999999999875442 4555555554443 466999999999999999875
No 47
>KOG1293|consensus
Probab=92.47 E-value=2.4 Score=43.52 Aligned_cols=164 Identities=20% Similarity=0.177 Sum_probs=114.2
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhc
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEA 82 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~ 82 (256)
+|+..+ .|-+=.-|..-|.++.-.. +.+.||+|.+|..+..+ -...++--|+...|+....... +.++++
T Consensus 22 dpe~lv-rai~~~kN~vig~~~~K~~-~ik~GAv~~Ll~L~s~e-----~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 22 DPEQLV-RAIYMSKNLVIGFTDNKET-NIKLGAVELLLALLSLE-----DGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred CHHHHH-HHHHHhcchhhcCCCccch-hhhhcchHHHHhhcccc-----CCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 445545 7888888999999988865 56999999999977722 2356777788888887755432 589999
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC---C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD---P-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~---~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+.+..+++.++.-. .+ .++...+-...++..-.+..| . +-+.+++.+.-++.++-+.+..--|.-++.++..
T Consensus 95 ~~ll~Ll~LLs~sD--~~-~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~- 170 (678)
T KOG1293|consen 95 IELLKLLQLLSESD--SL-NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST- 170 (678)
T ss_pred hhHHHHHHHhcCcc--hH-hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-
Confidence 99999999997533 12 223344444555554444444 2 6788999998887767667766666666665543
Q ss_pred cCCCCCccchhccccHHHHHHHhcc
Q psy15268 159 TRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 159 ~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.++=--++++|+.+.+.-++..
T Consensus 171 ---~~hq~Il~Na~i~ekI~~l~~~ 192 (678)
T KOG1293|consen 171 ---KDHQLILCNAGILEKINILLMY 192 (678)
T ss_pred ---chhhheeccccchhhHHHHHHh
Confidence 2444457788999998888753
No 48
>PF05536 Neurochondrin: Neurochondrin
Probab=92.39 E-value=0.65 Score=46.72 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhcCCCCCC-CCChHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHH
Q psy15268 102 DTLHSAMAVVSRLCSKMEPQ-DPQLPEAVEALSLLLRHEDT-HISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLI 179 (256)
Q Consensus 102 ~~l~~a~~~vsNlCr~~~~~-~~~v~~~lP~L~~lL~~~D~-~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~ 179 (256)
..+.-|+.+++-+|+--+-. ++.+-.-+|.|.+.+.+.+. .++++++.|+..++ + .++-.+.+++.|.++.|.+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s---~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-S---SPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-c---CcHhHHHHHhcCCHHHHHH
Confidence 34458999999999921111 24899999999999876665 99999999999999 4 4678999999999999999
Q ss_pred Hhcc
Q psy15268 180 RLSN 183 (256)
Q Consensus 180 LL~~ 183 (256)
.+.+
T Consensus 148 i~~~ 151 (543)
T PF05536_consen 148 IIPN 151 (543)
T ss_pred HHHh
Confidence 9975
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.26 E-value=3.7 Score=43.68 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|+..+|+... .|+++|-.+-. +..+.|++.|. .+..+|+..++++|+.+-.
T Consensus 693 L~~~d~~VR~-~A~~aL~~~~~-------------~~~~~l~~~L~-------D~d~~VR~~Av~aL~~~~~-------- 743 (897)
T PRK13800 693 LGSPDPVVRA-AALDVLRALRA-------------GDAALFAAALG-------DPDHRVRIEAVRALVSVDD-------- 743 (897)
T ss_pred hcCCCHHHHH-HHHHHHHhhcc-------------CCHHHHHHHhc-------CCCHHHHHHHHHHHhcccC--------
Confidence 4455666666 77777766421 22345555554 3366788888888887621
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
..+++..+......+++ .+...+........ ..+|.|..+++.+|+.|...|..+|..+.+
T Consensus 744 ---~~~l~~~l~D~~~~VR~----~aa~aL~~~~~~~~-------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 744 ---VESVAGAATDENREVRI----AVAKGLATLGAGGA-------PAGDAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred ---cHHHHHHhcCCCHHHHH----HHHHHHHHhccccc-------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 23345555555555555 66666666543321 226667777777777777777777777653
No 50
>KOG2122|consensus
Probab=91.41 E-value=1.1 Score=49.85 Aligned_cols=197 Identities=18% Similarity=0.132 Sum_probs=129.9
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchhhhc-CcHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSVFEA-GGLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~Vl~~-G~l~al 88 (256)
.|.-||||+-=|--..-...-.+.|-+.+++.-|. . ...||-.-.-..|.|+|=+ +-+.||+. |.+.++
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~-s------~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI-S------APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHh-c------ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 57789999865443333334557888999998886 2 2468877777889999866 33567754 656555
Q ss_pred HHhhc----ccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCC----HHHHHHHHHHHHHhhhhcc
Q psy15268 89 LLFIK----QHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHED----THISDAALRCFASLSDRFT 159 (256)
Q Consensus 89 L~~ld----ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D----~~vv~~ac~als~L~d~~~ 159 (256)
..-.- .|+...-. +|+|=++--|.- +..++ .|-.+|-.|...|.|+- -.|+|.+=-.|-|++.-..
T Consensus 443 a~~al~~~kEsTLKavL----SALWNLSAHcte-NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA 517 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVL----SALWNLSAHCTE-NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA 517 (2195)
T ss_pred HHHHHHhcccchHHHHH----HHHhhhhhcccc-cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence 54332 12222222 688877766654 23445 89999999999998874 4688887766666654433
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
...+.=|.+-++..+..|++.|.++.- -.++...+.|.+|..-||+--+-
T Consensus 518 t~E~yRQILR~~NCLq~LLQ~LKS~SL------------------------------TiVSNaCGTLWNLSAR~p~DQq~ 567 (2195)
T KOG2122|consen 518 TCEDYRQILRRHNCLQTLLQHLKSHSL------------------------------TIVSNACGTLWNLSARSPEDQQM 567 (2195)
T ss_pred ccchHHHHHHHhhHHHHHHHHhhhcce------------------------------EEeecchhhhhhhhcCCHHHHHH
Confidence 334556778899999999999975421 12223456677888888887777
Q ss_pred HHhcChHHHHhh
Q psy15268 240 LLHSDLPDAIGC 251 (256)
Q Consensus 240 Ll~~~l~~~l~~ 251 (256)
|...+-...++.
T Consensus 568 LwD~gAv~mLrn 579 (2195)
T KOG2122|consen 568 LWDDGAVPMLRN 579 (2195)
T ss_pred HHhcccHHHHHH
Confidence 776664444443
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.39 E-value=3 Score=40.19 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHHHhccccchhh-hcCcHHHHHHhhcccCc-----------cc--chhhhhHHHHHHHHhcCCCCCCC
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVF-EAGGLASVLLFIKQHGH-----------SV--HKDTLHSAMAVVSRLCSKMEPQD 122 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl-~~G~l~alL~~ldff~~-----------~~--qr~~l~~a~~~vsNlCr~~~~~~ 122 (256)
+.++++++-+++|.|-+|.++..= +.|..--+|.-=+||.. .. .| .+-+-.++++.+++|.+-
T Consensus 282 ~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k---~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 282 SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK---SNYLTALSHLLKNVPKSV 358 (415)
T ss_pred ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH---HHHHHHHHHHHhhCCHHH
Confidence 578999999999999999543211 11222212111112211 11 12 256778899999987554
Q ss_pred --CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhcc--ccHHHHHHH
Q psy15268 123 --PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQH--GLASELLIR 180 (256)
Q Consensus 123 --~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~--glv~~Lv~L 180 (256)
+.+.+.+|.|-+-|..+|+++...+..++..+.+. ..+.+.++ .+|++|+++
T Consensus 359 l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~------~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE------APELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc------CHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999999976 23333333 466666653
No 52
>KOG2023|consensus
Probab=89.16 E-value=1.2 Score=46.11 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC--cHHHHHHhhcccCcccchhhhhHHHHHHHHh
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG--GLASVLLFIKQHGHSVHKDTLHSAMAVVSRL 114 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G--~l~alL~~ldff~~~~qr~~l~~a~~~vsNl 114 (256)
-..|.|-++|. .+ .=-+.|-.+-|||-|+.-+-+..+.+= -+.-+++.+|.-..-+-+ -.-||+++.
T Consensus 393 ~l~PlLk~~L~--~~-----~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs----ITCWTLsRy 461 (885)
T KOG2023|consen 393 ILLPLLKEHLS--SE-----EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS----ITCWTLSRY 461 (885)
T ss_pred HHHHHHHHHcC--cc-----hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee----eeeeeHhhh
Confidence 34677777776 22 456899999999999876544333321 223344555544444444 667999988
Q ss_pred cCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 115 CSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 115 Cr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
-..+-..+ .+.++++..|-+.+--..++|-|.||.||+-+-+.
T Consensus 462 s~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 77763333 47888888777777778899999999999998876
No 53
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.98 E-value=5.7 Score=37.06 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred CchhHHHHHHHHHHHHhcc--CchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 6 APENVLEVTARAMTYYLDV--SAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~--~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
.++-+. .|++++.-++=- ..+.... +.....|.|.+.+. . .+....++..|+.||+.++--+... ..
T Consensus 99 ~~~E~~-lA~~~l~Ll~ltlg~g~~~~e--i~~~~~~~L~~~l~-d----~s~~~~~R~~~~~aLai~~fv~~~d---~~ 167 (309)
T PF05004_consen 99 KSEEQA-LAARALALLALTLGAGEDSEE--IFEELKPVLKRILT-D----SSASPKARAACLEALAICTFVGGSD---EE 167 (309)
T ss_pred CHHHHH-HHHHHHHHHhhhcCCCccHHH--HHHHHHHHHHHHHh-C----CccchHHHHHHHHHHHHHHHhhcCC---hh
Confidence 334455 677876655322 1233333 36678898888766 2 2334677788999999874432221 11
Q ss_pred cHHHHHHhhc--ccCc----ccc---------hhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHH
Q psy15268 84 GLASVLLFIK--QHGH----SVH---------KDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTHISDA 146 (256)
Q Consensus 84 ~l~alL~~ld--ff~~----~~q---------r~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ 146 (256)
.+..++..++ |+.. .-+ -.+.-.|+..-+-+-...++.. ..+...+|.|..+|.++|.+|.-.
T Consensus 168 ~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiA 247 (309)
T PF05004_consen 168 ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIA 247 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2221222222 1100 000 0122244444444555555433 267889999999999999999999
Q ss_pred HHHHHHHhhhhccC
Q psy15268 147 ALRCFASLSDRFTR 160 (256)
Q Consensus 147 ac~als~L~d~~~~ 160 (256)
|--+++-|-+....
T Consensus 248 AGEaiAll~E~~~~ 261 (309)
T PF05004_consen 248 AGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887653
No 54
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.97 E-value=0.82 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 39 MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 39 Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
+|.|.+.|. -++.+|++.|+++|+.|+.
T Consensus 2 lp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 688888776 3478999999999999975
No 55
>KOG2274|consensus
Probab=88.75 E-value=12 Score=40.11 Aligned_cols=134 Identities=12% Similarity=0.145 Sum_probs=95.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-hhhhcCcHHHHHHh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-SVFEAGGLASVLLF 91 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~Vl~~G~l~alL~~ 91 (256)
.-.-+|+-+....|+.++. ..+-..|-+..... . .+.+.-+++++--+++.++..... .=+..--++.+++-
T Consensus 549 llmE~Ls~vv~~dpef~as--~~skI~P~~i~lF~-k----~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisi 621 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPEFAAS--MESKICPLTINLFL-K----YSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISV 621 (1005)
T ss_pred HHHHHHHHHhccChhhhhh--hhcchhHHHHHHHH-H----hcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456788888899999864 36666777776554 2 122446888888888888774211 11233345666666
Q ss_pred hcccC----cccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhhhh
Q psy15268 92 IKQHG----HSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLL-LRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 92 ldff~----~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~l-L~~~D~~vv~~ac~als~L~d~ 157 (256)
++-.. ...+- .|.-++.-.-|+.|||=+ .+..++|++.+. |+++|...+..+=-||.++...
T Consensus 622 l~~~~~~~~~~l~~----~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCA----IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HcCcccccCchhhH----HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 65433 44454 788888888899866654 799999999988 7788999999999999999865
No 56
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=88.74 E-value=21 Score=35.09 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=119.6
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c-hhh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G-SVF 80 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~-~Vl 80 (256)
.+++... ||-|||-|++=-+|..-+. .++.|..+.+|++|. ... ......|+.==....|=.+....+ . .+-
T Consensus 44 ~~~~v~~-EALKCL~N~lf~s~~aR~~-~~~~~~~~~l~~~Lk-~~~-~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 44 PDPDVSR-EALKCLCNALFLSPSARQI-FVDLGLAEKLCERLK-NYS-DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred CChHHHH-HHHHHHHHHHhCCHHHHHH-HHHcCcHHHHHHHHH-ccc-ccCCChhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4567777 9999999999988876654 569999999999998 321 010123443333344433333322 2 244
Q ss_pred hcCcHHHHHHhhcc----cCcc---------cchhhhhHHHHHHHHhcCCCCCC---C--CChHHHHHHHHHhh---cCC
Q psy15268 81 EAGGLASVLLFIKQ----HGHS---------VHKDTLHSAMAVVSRLCSKMEPQ---D--PQLPEAVEALSLLL---RHE 139 (256)
Q Consensus 81 ~~G~l~alL~~ldf----f~~~---------~qr~~l~~a~~~vsNlCr~~~~~---~--~~v~~~lP~L~~lL---~~~ 139 (256)
+++|+..+...+.- .... .+...+.-++-++=|+.-..+.. . ..+..++++|..++ ..+
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCC
Confidence 55777777777652 1111 23333444455555654332221 1 26777777777773 111
Q ss_pred --CHHHHHHHHHHHHHhhhhcc--------CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccc
Q psy15268 140 --DTHISDAALRCFASLSDRFT--------RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLA 209 (256)
Q Consensus 140 --D~~vv~~ac~als~L~d~~~--------~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (256)
-......+..++..+--... ..+...-.-.+..++.+|+++|...-...
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~--------------------- 258 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY--------------------- 258 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc---------------------
Confidence 13466677777776621100 01111112233357888888885421100
Q ss_pred cccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 210 TEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 210 ~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
....-.....+++.+|..+|+++ ..++..++.-
T Consensus 259 -~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~ 291 (446)
T PF10165_consen 259 -EALKLDELLTPLLTLLTRLARAA-REVRKYLRAR 291 (446)
T ss_pred -CcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHH
Confidence 01112467788999999999999 6666666654
No 57
>KOG2171|consensus
Probab=88.11 E-value=12 Score=40.74 Aligned_cols=207 Identities=15% Similarity=0.207 Sum_probs=128.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCc-HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchh
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGA-MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSV 79 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gA-Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~V 79 (256)
+|.+.+|.... .||-|+--|..-.+..... - .+.. .|.|...+. .- ....+---|.-||-|.+.+.++.+
T Consensus 397 ~l~DphprVr~-AA~naigQ~stdl~p~iqk-~-~~e~l~~aL~~~ld-~~-----~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 397 GLNDPHPRVRY-AALNAIGQMSTDLQPEIQK-K-HHERLPPALIALLD-ST-----QNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred hcCCCCHHHHH-HHHHHHHhhhhhhcHHHHH-H-HHHhccHHHHHHhc-cc-----CchHHHHHHHHHHHHHHHhCcHHH
Confidence 46677788888 9999999999888777754 2 4444 457877665 32 255677778889999999999877
Q ss_pred hhc---CcHHHHHHhhcccCc-ccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCC-H---HHHHHHHHH
Q psy15268 80 FEA---GGLASVLLFIKQHGH-SVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHED-T---HISDAALRC 150 (256)
Q Consensus 80 l~~---G~l~alL~~ldff~~-~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D-~---~vv~~ac~a 150 (256)
+.- |-+...+..+-+.+. .+|- .++++++-.---...+- ++....+|.|.+.|+..| + .+.-...-|
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e----~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEc 543 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQE----QAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMEC 543 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHH----HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHH
Confidence 653 555556666665543 4444 66666554332221111 389999999999998654 3 344556677
Q ss_pred HHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHh
Q psy15268 151 FASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALC 230 (256)
Q Consensus 151 ls~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~ 230 (256)
++-+.-...+ ++.- +....+++++....+.. ........+-.+..-+.+|
T Consensus 544 isli~~AVGk--e~F~-----~~a~eliqll~~~~~~~-----------------------~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 544 LSLIARAVGK--EKFL-----PLAEELIQLLLELQGSD-----------------------QDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHhhh--hhhh-----HhHHHHHHHHHhhcccc-----------------------hhhccccHHHHHHHHHHHH
Confidence 7776644321 2222 45577777776432211 1122334455777777888
Q ss_pred cCCHHHHHHHHhcChHHHHh
Q psy15268 231 RGSPSITSDLLHSDLPDAIG 250 (256)
Q Consensus 231 ~~S~~it~~Ll~~~l~~~l~ 250 (256)
+.=-+--...+..=+|..++
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHH
Confidence 76555555555544444443
No 58
>PTZ00429 beta-adaptin; Provisional
Probab=87.86 E-value=28 Score=36.64 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 60 LAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 60 laEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
|+--|+-|+.+|-...|+.+-+.|-+.-+..+++.-...++. +|+.++..+|.
T Consensus 156 VRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~----nAl~aL~eI~~ 208 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVAS----NAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHH----HHHHHHHHHHH
Confidence 333333344444333333333334344444444433444444 55555555543
No 59
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.36 E-value=8.5 Score=37.08 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=112.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI 92 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l 92 (256)
.|.+.|-.+++..|.....+ .+.|.+..+++||. .| .+.+.+- .+....+.. ....- --...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f-~~~~G~~~li~rl~--~E------v~~~~~~----~~~~~~~~~--~~~~~---~~~~~ 64 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAF-RNLNGLDILIDRLQ--YE------VDFALEE----NKNEEAGSG--IPPEY---KESSV 64 (379)
T ss_pred HHHHHHHHHHhccHHHHHHH-HhCCCHHHHHHHHH--HH------HHHHHhc----ccccCCCCC--CCCCc---ccccc
Confidence 46788999999999988776 59999999999997 11 3333331 011110000 00000 00011
Q ss_pred cccCccc-chhhhhHHHHHHHHhcC-CCCCCC-C-C-h--HHHHHHHHHhhcCCC---HHHHHHHHHHHHHhhhhccCCC
Q psy15268 93 KQHGHSV-HKDTLHSAMAVVSRLCS-KMEPQD-P-Q-L--PEAVEALSLLLRHED---THISDAALRCFASLSDRFTRRG 162 (256)
Q Consensus 93 dff~~~~-qr~~l~~a~~~vsNlCr-~~~~~~-~-~-v--~~~lP~L~~lL~~~D---~~vv~~ac~als~L~d~~~~~~ 162 (256)
+.+.+.. |+.+||..+-.+..++. .-...+ - . + ...+..|..++.+.+ +.|...|...++.++-. +|
T Consensus 65 ~~~~i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---eP 141 (379)
T PF06025_consen 65 DGYSISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EP 141 (379)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CC
Confidence 1123333 45677777788888887 322233 1 2 2 356777888887764 77888888888887765 78
Q ss_pred CCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 163 VDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 163 ~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
.-+..|.++|+.+.+++-+...+- ..+...+..+-..|+.+|=...-+
T Consensus 142 T~~~~l~e~Gl~~~~L~~i~~~~i--------------------------~~s~e~l~~lP~~l~AicLN~~Gl 189 (379)
T PF06025_consen 142 TSFSILQEAGLIDAFLDAITAKGI--------------------------LPSSEVLTSLPNVLSAICLNNRGL 189 (379)
T ss_pred chhHHHHHcCChHHHHHHHhccCC--------------------------CCcHHHHHHHHHHHhHHhcCHHHH
Confidence 899999999999999999862221 134466667778888888665544
No 60
>PF05536 Neurochondrin: Neurochondrin
Probab=87.30 E-value=5.6 Score=40.09 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=91.8
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhcC
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEAG 83 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~G 83 (256)
++..+.-.|--.|+-+.. .|+-... --.-+.||.|++-+. . .+...+.+.|+++|-.|+.- ++..+++.|
T Consensus 69 ~~~~~~~LavsvL~~f~~-~~~~a~~-~~~~~~IP~Lle~l~-~-----~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCR-DPELASS-PQMVSRIPLLLEILS-S-----SSDLETVDDALQCLLAIASSPEGAKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcC-ChhhhcC-HHHHHHHHHHHHHHH-c-----CCchhHHHHHHHHHHHHHcCcHhHHHHHhcC
Confidence 456666455555665555 5554421 123378999999877 3 22358899999999999863 556899999
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC----C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD----P-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~----~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++.++...+.. .... +..|+-++.|+|.+..... . .+..+++.|++........-.-..|.-++++-..
T Consensus 141 ~v~~L~ei~~~-~~~~----~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQ----MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred CHHHHHHHHHh-Ccch----HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 99999998864 1222 2378888888888765322 2 5667788888776654444444556666666655
No 61
>KOG0946|consensus
Probab=86.92 E-value=12 Score=39.61 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc--------cc-------
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE--------AG------- 77 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~--------~~------- 77 (256)
-|+|+|--+. +.-+- .|-.-+.|.|++-|.+ ++.+.|+---++.++-++-..+ +.
T Consensus 42 ~A~rgLKa~s----rkYR~-~Vga~Gmk~li~vL~~-----D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 42 DAVRGLKAFS----RKYRE-EVGAQGMKPLIQVLQR-----DYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred HHHHHHHHHH----HHHHH-HHHHcccHHHHHHHhh-----ccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 6888886654 45533 4456778999998882 3446677777787777763321 11
Q ss_pred -----hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC----ChHHHHHHHHHhhcCCCHHHHHHHH
Q psy15268 78 -----SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP----QLPEAVEALSLLLRHEDTHISDAAL 148 (256)
Q Consensus 78 -----~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~----~v~~~lP~L~~lL~~~D~~vv~~ac 148 (256)
.+.+.+-+..+|.|++.|..|+-| -++-.++++-+..|+.-. ..+..+..|..+|.-.-.-|..++.
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR~----~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVRL----YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhhh----HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 367789999999999999999999 999999999887766321 1233344455556655667888999
Q ss_pred HHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHH
Q psy15268 149 RCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLS 227 (256)
Q Consensus 149 ~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls 227 (256)
.-++-++.+ +..+|.++-. ++..+|..++..-||. -+.=.+..++.+|-
T Consensus 188 LlL~eL~k~----n~~IQKlVAFENaFerLfsIIeeEGg~--------------------------dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 188 LLLSELVKD----NSSIQKLVAFENAFERLFSIIEEEGGL--------------------------DGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHHcc----CchHHHHHHHHHHHHHHHHHHHhcCCC--------------------------CCcchHHHHHHHHH
Confidence 988888865 4679988866 6999999999876553 12235567777777
Q ss_pred HHhcCCHH
Q psy15268 228 ALCRGSPS 235 (256)
Q Consensus 228 ~l~~~S~~ 235 (256)
+|-+....
T Consensus 238 NLLK~N~S 245 (970)
T KOG0946|consen 238 NLLKNNIS 245 (970)
T ss_pred HHHhhCcc
Confidence 77665443
No 62
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.70 E-value=6.1 Score=42.03 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=75.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.+++.-. .|+.+|..+.+..+ ..+.|.+.|. .++.++..-++.+|+.+...
T Consensus 661 L~D~d~~VR~-~Aa~aL~~l~~~~~-----------~~~~L~~~L~-------~~d~~VR~~A~~aL~~~~~~------- 714 (897)
T PRK13800 661 LGDGAAAVRR-AAAEGLRELVEVLP-----------PAPALRDHLG-------SPDPVVRAAALDVLRALRAG------- 714 (897)
T ss_pred HcCCCHHHHH-HHHHHHHHHHhccC-----------chHHHHHHhc-------CCCHHHHHHHHHHHHhhccC-------
Confidence 4556666666 88889887754332 2356777665 24778999999999887422
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
....++.+++.....+.+ .|++.+..+ .. .+.|..++..+|++|...+..+|.++.+.
T Consensus 715 --~~~~l~~~L~D~d~~VR~----~Av~aL~~~----~~--------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 715 --DAALFAAALGDPDHRVRI----EAVRALVSV----DD--------VESVAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred --CHHHHHHHhcCCCHHHHH----HHHHHHhcc----cC--------cHHHHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 233456666655555566 666666643 11 13456778899999999999999888754
No 63
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.17 E-value=2.3 Score=32.86 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=54.7
Q ss_pred HHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 86 ASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 86 ~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
.-.+.++...-..++- .++..++++.++++ .+ ..+..++..+...|.++|+-|-=.|..+|+-+++.+
T Consensus 6 ~~al~~L~dp~~PvRa----~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRA----HGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHccCCCcchHH----HHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 3455566555455555 78888999998876 23 378899999999999999999999999999999986
No 64
>KOG2274|consensus
Probab=84.15 E-value=22 Score=38.14 Aligned_cols=197 Identities=15% Similarity=0.147 Sum_probs=123.9
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhhhc
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVFEA 82 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl~~ 82 (256)
.|.+.. -|-|++.++.+. .++..+-...+.++....+.+++.++.- +.|+.-+++-+.. .=+.-
T Consensus 463 ~P~Ll~-Ra~~~i~~fs~~-------~~~~~~~~~~fl~~~v~~l~~~~~~~~k-----i~a~~~~~~~~~~~vl~~~~p 529 (1005)
T KOG2274|consen 463 SPFLLL-RAFLTISKFSSS-------TVINPQLLQHFLNATVNALTMDVPPPVK-----ISAVRAFCGYCKVKVLLSLQP 529 (1005)
T ss_pred CHHHHH-HHHHHHHHHHhh-------hccchhHHHHHHHHHHHhhccCCCCchh-----HHHHHHHHhccCceeccccch
Confidence 455555 555555544443 2345555666666665455555566553 3455555555433 34456
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHh--hcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLL--LRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~l--L~~~D~~vv~~ac~als~L~d~~~ 159 (256)
+.+..++++.-.|+..+.- --|-+++-.|+-.|.... .-..+.|.+-++ -+++||.|.+-+--+|-.+++.-.
T Consensus 530 ~ild~L~qlas~~s~evl~----llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~ 605 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLV----LLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA 605 (1005)
T ss_pred HHHHHHHHHcccccHHHHH----HHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 8889999998776655544 788899999976544443 455566766666 367899999999999998888632
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH-HHHH
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP-SITS 238 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~-~it~ 238 (256)
......+ -++|.+++.|..++. ...+.-+...+.+|+++.|+-| .+..
T Consensus 606 ----~~g~m~e-~~iPslisil~~~~~--------------------------~~~~~l~~~aidvLttvvr~tp~pL~~ 654 (1005)
T KOG2274|consen 606 ----NYGPMQE-RLIPSLISVLQLNAD--------------------------KAPAGLCAIAIDVLTTVLRNTPSPLPN 654 (1005)
T ss_pred ----hhcchHH-HHHHHHHHHHcCccc--------------------------ccCchhhHHHHHHHHHHHhcCCCCccH
Confidence 2333332 468999999975432 2334566788888887777644 3555
Q ss_pred HHHhcChHHHHh
Q psy15268 239 DLLHSDLPDAIG 250 (256)
Q Consensus 239 ~Ll~~~l~~~l~ 250 (256)
.++...+|-.++
T Consensus 655 ~l~~~~FpaVak 666 (1005)
T KOG2274|consen 655 LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHhHHhHh
Confidence 555555554443
No 65
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=83.92 E-value=8.4 Score=37.88 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEA 82 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~ 82 (256)
.+.-++. .|++.||.+++..++... ..+.+.+.+.|. .. +.+....+....|+.+|..+-+. ++....++
T Consensus 113 ~d~~i~~-~a~~iLt~l~~~~~~~~~-----~~~l~~~~~~l~-~~-l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 113 QDQFIVH-MSFSILAKLACFGLAKME-----GSDLDYYFNWLK-EQ-LNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred CchhHHH-HHHHHHHHHHhcCccccc-----hhHHHHHHHHHH-HH-hhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 3334455 999999999987665322 224444444332 11 11111345555566666555443 44567789
Q ss_pred CcHHHHHHhhcccCcccch--hhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHK--DTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHE-DTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr--~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~-D~~vv~~ac~als~L~d~~~ 159 (256)
+|+..+...++.-....|- .++ -++|.+|--....+. ..=.+++|.|.+++... -.+|+--++.+|-.+.+.-.
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~l-l~lWlLSF~~~~~~~--~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSI-FCIWLLTFNPHAAEV--LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHH-HHHHHHhccHHHHHh--hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999754333332 222 478999855432211 12257899999998755 45677777778888887431
Q ss_pred C---CCCCccchhccccHHHHHHHh
Q psy15268 160 R---RGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 160 ~---~~~~i~~l~~~glv~~Lv~LL 181 (256)
. .......+++.|+.+ +++.|
T Consensus 262 ~~~~~~~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 262 DREVKKTAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred ccchhhhHHHHHHHcChHH-HHHHH
Confidence 1 123445667777655 33444
No 66
>KOG1242|consensus
Probab=83.85 E-value=12 Score=38.05 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=101.2
Q ss_pred HHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccc---------------
Q psy15268 15 ARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAG--------------- 77 (256)
Q Consensus 15 araLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~--------------- 77 (256)
.-.|-.+++.-|.|-.. -....||.+.+.|- -+..++++|+..+|-+++.- .++
T Consensus 275 lellg~m~~~ap~qLs~--~lp~iiP~lsevl~-------DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 275 LELLGAMADCAPKQLSL--CLPDLIPVLSEVLW-------DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADP 345 (569)
T ss_pred HHHHHHHHHhchHHHHH--HHhHhhHHHHHHHc-------cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCc
Confidence 33555677777888743 47889999999887 34689999999999998552 221
Q ss_pred --h---------------hhhcCcHHHHHHhhc----ccCcccchhhhhHHHHHHHHhcCCC-CCCC--CChHHHHHHHH
Q psy15268 78 --S---------------VFEAGGLASVLLFIK----QHGHSVHKDTLHSAMAVVSRLCSKM-EPQD--PQLPEAVEALS 133 (256)
Q Consensus 78 --~---------------Vl~~G~l~alL~~ld----ff~~~~qr~~l~~a~~~vsNlCr~~-~~~~--~~v~~~lP~L~ 133 (256)
. .+.+-.+.-+...+. .-+....| .+.-++=|+|+-+ +|.+ +++...+|.|.
T Consensus 346 ~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr----~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 346 SCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKR----KTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred ccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhh----hHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 0 111112222222221 11233344 8888999999988 5555 48999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 134 LLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 134 ~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
..+.-.+|++.+-+.+|+.-+.++..+.. ..+++|.+.+.+.
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~-------f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVS-------FDDLIPELSETLT 463 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhc-------ccccccHHHHhhc
Confidence 99888899999999999988887753221 1567777777774
No 67
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.73 E-value=22 Score=30.57 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHHHHHHhccC--chhhhHHH-HhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch--h
Q psy15268 5 TAPENVLEVTARAMTYYLDVS--AECTRRIV-AIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS--V 79 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~--p~~t~~iv-v~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~--V 79 (256)
.|=+... +|-.-|..++.+. .+....++ .-...++.++..+. . . .--|+-.|+.+++.++...+.. -
T Consensus 19 ~~W~~r~-~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d-----~-Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 19 SDWEERV-EALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-D-----L-RSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp SSHHHHH-HHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--H-----H----HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCHHHHH-HHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-h-----h-HHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 3444555 7777777777766 22222211 01134445555444 1 1 2347888888998888775543 1
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHH-HHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEA-VEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~-lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+-...+++++.-+......+.. .|.-++-.+|.+.+ ....+ ++.+.....|..+.+...++.++..+...+
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~----~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIRE----AANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHH----HHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccccHHHHH----HHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 2233445555555432222233 66677778887764 12344 788888899999999999999999999886
Q ss_pred cCCCCCccchh-ccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 159 TRRGVDPAPLA-QHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 159 ~~~~~~i~~l~-~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
..+...++.-. -..+++.+.+.+... .+.+=...-+++..+.+.-|+-+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~------------------------------~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDA------------------------------DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-------------------------------HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCC------------------------------CHHHHHHHHHHHHHHHHHCCHhh
Confidence 42122222211 023555555555321 12333355667777777888888
Q ss_pred HHHHhcChHHHHhhhh
Q psy15268 238 SDLLHSDLPDAIGCPR 253 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~~ 253 (256)
..++ +.++..+++.|
T Consensus 213 ~~~~-~~l~~~~qk~l 227 (228)
T PF12348_consen 213 ESIL-SMLDPNIQKYL 227 (228)
T ss_dssp ----------------
T ss_pred ccch-hcchhcccccC
Confidence 8877 55777766654
No 68
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=82.87 E-value=5.5 Score=39.05 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=62.1
Q ss_pred cCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCc
Q psy15268 137 RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASS 216 (256)
Q Consensus 137 ~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 216 (256)
...|.++...|+.|++.+. |.....+ +..++.|..+.+++.|..... ...+.
T Consensus 42 ~~~~~~v~~EALKCL~N~l--f~s~~aR-~~~~~~~~~~~l~~~Lk~~~~-------------------------~~~~~ 93 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNAL--FLSPSAR-QIFVDLGLAEKLCERLKNYSD-------------------------SSQPS 93 (446)
T ss_pred cCCChHHHHHHHHHHHHHH--hCCHHHH-HHHHHcCcHHHHHHHHHcccc-------------------------cCCCh
Confidence 4457888888888888877 3222223 677788999999999975321 11233
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhcC-hHHHHhhhh
Q psy15268 217 GSVSTIVSLLSALCRGSPSITSDLLHSD-LPDAIGCPR 253 (256)
Q Consensus 217 ~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~~l~~~~ 253 (256)
...--..|+|-.++...+..-.+|.+.. +.+.|-..|
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L 131 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEAL 131 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHH
Confidence 4445688999999999999999998875 555554433
No 69
>KOG2122|consensus
Probab=82.75 E-value=1.6 Score=48.69 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=95.1
Q ss_pred HHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc------cccchhhhcCcHHHHH
Q psy15268 16 RAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT------REAGSVFEAGGLASVL 89 (256)
Q Consensus 16 raLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~------d~~~~Vl~~G~l~alL 89 (256)
-||-|+.--..+--..|-..+||+..|+..|.-.- .+..--+-|-+=-.|.|+|. +|+....+++.|.-+|
T Consensus 460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~---qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LL 536 (2195)
T KOG2122|consen 460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG---QSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLL 536 (2195)
T ss_pred HHHhhhhhcccccchhhhcccchHHHHHhhccccC---CcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHH
Confidence 35666666666666667778999999999886111 12234677777778888765 3445677899999999
Q ss_pred HhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CCh--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 90 LFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQL--PEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 90 ~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v--~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+.|.-.+..+-- |+.-++-||--+ .|.| .++ ..++|.|.+|+++..+.|.+.+.-||-.|..
T Consensus 537 Q~LKS~SLTiVS----NaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 537 QHLKSHSLTIVS----NACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHhhhcceEEee----cchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 999865554444 555555566544 3444 243 4578999999999999999999999999884
No 70
>KOG1060|consensus
Probab=82.06 E-value=11 Score=39.81 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=87.4
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---- 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---- 77 (256)
|...||-.++ .+|++.++++.-. +.+ ..+++|+.+|. + ..++.+-.++.+--||-..|.
T Consensus 296 l~S~n~sVVm-A~aql~y~lAP~~--~~~------~i~kaLvrLLr-s-------~~~vqyvvL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 296 LQSRNPSVVM-AVAQLFYHLAPKN--QVT------KIAKALVRLLR-S-------NREVQYVVLQNIATISIKRPTLFEP 358 (968)
T ss_pred HhcCCcHHHH-HHHhHHHhhCCHH--HHH------HHHHHHHHHHh-c-------CCcchhhhHHHHHHHHhcchhhhhh
Confidence 4456888888 9999999988633 332 33589998666 4 234444444444444443221
Q ss_pred ------------------------hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHH
Q psy15268 78 ------------------------SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALS 133 (256)
Q Consensus 78 ------------------------~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~ 133 (256)
.+..++.+..+|.-+..+=....|++.-.|+-++.+|-.+.-. .-..||-.|.
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s---v~~tCL~gLv 435 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS---VTDTCLNGLV 435 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc---hhhHHHHHHH
Confidence 1233444444444333332233444445566666666554322 3346777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 134 LLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 134 ~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.++.+.|..||..+..-+-+|... ++.+.. .++.+|.+++.
T Consensus 436 ~Llsshde~Vv~eaV~vIk~Llq~---~p~~h~-----~ii~~La~lld 476 (968)
T KOG1060|consen 436 QLLSSHDELVVAEAVVVIKRLLQK---DPAEHL-----EILFQLARLLD 476 (968)
T ss_pred HHHhcccchhHHHHHHHHHHHHhh---ChHHHH-----HHHHHHHHHhh
Confidence 777777888888888877777765 222211 25566666664
No 71
>KOG1059|consensus
Probab=81.09 E-value=8.5 Score=40.30 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccC
Q psy15268 106 SAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAA 185 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~ 185 (256)
+|+-++-..|-+- ++.++++||-|..-|.-.|+.|+..|..-++-|+.+ +|. .-. .+-|-+-+||..
T Consensus 163 kAIl~lykvFLkY---PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK---nPk---nyL--~LAP~ffklltt-- 229 (877)
T KOG1059|consen 163 KAILLLYKVFLKY---PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK---NPQ---NYL--QLAPLFYKLLVT-- 229 (877)
T ss_pred HHHHHHHHHHHhh---hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh---CCc---ccc--cccHHHHHHHhc--
Confidence 5666666666442 348999999999999999999999999999999976 333 222 355778888842
Q ss_pred CCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC---hHHHHhhhhcc
Q psy15268 186 GSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD---LPDAIGCPRIY 255 (256)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~---l~~~l~~~~~~ 255 (256)
+.+.=....+|++.+.|.---|.+-+.|++.= +-.|.-..|+|
T Consensus 230 ---------------------------SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlY 275 (877)
T KOG1059|consen 230 ---------------------------SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLY 275 (877)
T ss_pred ---------------------------cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHH
Confidence 12335778999999999999999999998632 44444444444
No 72
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.08 E-value=2.2 Score=33.26 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 106 SAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-+++.++.++...+..- .++++++|.+-..+..+|.+|.-.||-++..++..++ ++.+. .-..+.+.|.+++.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~--~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILP--YFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHc
Confidence 67888888888775554 4899999999999999999999999999999997652 22222 11367777777775
No 73
>KOG1062|consensus
Probab=80.43 E-value=5.9 Score=41.69 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHH
Q psy15268 214 ASSGSVSTIVSLLSALCRGSPSITS 238 (256)
Q Consensus 214 ~s~~~~~~~l~~Ls~l~~~S~~it~ 238 (256)
.-|-....++|+|..|-++.++.+.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd 270 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASD 270 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHH
Confidence 3466788999999999999877654
No 74
>KOG1062|consensus
Probab=79.20 E-value=8.6 Score=40.54 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccC
Q psy15268 106 SAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAA 185 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~ 185 (256)
-|+.++.|+| +++..++..|-..++|+|.|+.|...|..|..|+.-. .|+..+ .+++.--++|...
T Consensus 126 lAL~alg~i~-----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK---~P~l~e-----~f~~~~~~lL~ek- 191 (866)
T KOG1062|consen 126 LALCALGNIC-----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK---VPDLVE-----HFVIAFRKLLCEK- 191 (866)
T ss_pred HHHHHhhccC-----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc---CchHHH-----HhhHHHHHHHhhc-
Confidence 5777777777 3458999999999999999999999999999999865 344333 3456666777431
Q ss_pred CCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 186 GSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
.++...+.+.++.-+|.-+|+..
T Consensus 192 -----------------------------~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 192 -----------------------------HHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred -----------------------------CCceeeeHHHHHHHHHhcCHHHH
Confidence 12334456777888888877543
No 75
>KOG4500|consensus
Probab=78.76 E-value=24 Score=35.26 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=106.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--ch
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GS 78 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~ 78 (256)
|++.+|.+.+. .++-|+.|++.--.-|.+. |+.|-+..|.+.|.++.. .-.+..+...|+.||.|+.---+ ..
T Consensus 323 w~~S~d~~l~t-~g~LaigNfaR~D~~ci~~--v~~~~~nkL~~~l~~~~~--vdgnV~~qhA~lsALRnl~IPv~nka~ 397 (604)
T KOG4500|consen 323 WFRSDDSNLIT-MGSLAIGNFARRDDICIQL--VQKDFLNKLISCLMQEKD--VDGNVERQHACLSALRNLMIPVSNKAH 397 (604)
T ss_pred HhcCCchhHHH-HHHHHHHhhhccchHHHHH--HHHHHHHHHHHHHHHhcC--CCccchhHHHHHHHHHhccccCCchhh
Confidence 45667778888 9999999999988888853 599999999998873332 22345677789999999865433 47
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C--ChHHHHHHHHHhhcCCCHH-HHHHHHHHHHHh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P--QLPEAVEALSLLLRHEDTH-ISDAALRCFASL 154 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~--~v~~~lP~L~~lL~~~D~~-vv~~ac~als~L 154 (256)
++.+|..+++|.++.-.++.+|-..+. +++=.--+.+..- + .-++.+.-|..-=.+.|-. |.-..-+-++.+
T Consensus 398 ~~~aGvteaIL~~lk~~~ppv~fkllg----TlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 398 FAPAGVTEAILLQLKLASPPVTFKLLG----TLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred ccccchHHHHHHHHHhcCCcchHHHHH----HHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 999999999999999877777653322 2221111111000 0 1123333333333344432 444444555555
Q ss_pred hhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 155 SDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 155 ~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+.-.. ..+-+-.+..+|.+++++..+.
T Consensus 474 IkHs~-~kdv~~tvpksg~ik~~Vsm~t 500 (604)
T KOG4500|consen 474 IKHSK-YKDVILTVPKSGGIKEKVSMFT 500 (604)
T ss_pred HHhhH-hhhhHhhccccccHHHHHHHHH
Confidence 43211 1234566667777777776653
No 76
>KOG2032|consensus
Probab=78.29 E-value=14 Score=37.15 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=85.6
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI 92 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l 92 (256)
.|||+|-|.+++.|+..+. ...--+..++.-|. +--+.||.=|++.+|-++.+--.+.=++.+=+...++..
T Consensus 277 ~a~r~L~~~as~~P~kv~t--h~~~~ldaii~gL~------D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR 348 (533)
T KOG2032|consen 277 MACRGLGNTASGAPDKVRT--HKTTQLDAIIRGLY------DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLR 348 (533)
T ss_pred HHHHHHHHHhccCcHHHHH--hHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHH
Confidence 7999999999998886632 11112333343343 222589999999999888776444456677777778877
Q ss_pred cccCc--ccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHh-hcCCCHH-HHHHHHHHHHHhh
Q psy15268 93 KQHGH--SVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLL-LRHEDTH-ISDAALRCFASLS 155 (256)
Q Consensus 93 dff~~--~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~l-L~~~D~~-vv~~ac~als~L~ 155 (256)
.||.. .--|-.-....-.++-+|.+. -.++...++.-.+..+ ++-+|+. -+..||....+.+
T Consensus 349 ~l~~se~~~~R~aa~~Lfg~L~~l~g~~-~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 349 TLFDSEDDKMRAAAFVLFGALAKLAGGG-WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred HHHHhcChhhhhhHHHHHHHHHHHcCCC-chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence 77732 223433345566677888764 4445555666555555 3335544 3678999888766
No 77
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.60 E-value=7.4 Score=28.98 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc
Q psy15268 12 EVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR 74 (256)
Q Consensus 12 ~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d 74 (256)
--|-||+-||.+.... . ...-+++.||.+++.-. +.+.--++--|..+|+.||+-
T Consensus 5 KaaLWaighIgss~~G-~-~lL~~~~iv~~iv~~a~------~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLG-I-QLLDESDIVEDIVKIAE------NSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHhHhcChHH-H-HHHhhcCHHHHHHHHHH------hCCccchHHHHHHHHHHHhCC
Confidence 3688999999873333 2 34546799999998655 345788999999999999985
No 78
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=77.39 E-value=5.6 Score=40.37 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL 136 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL 136 (256)
+.|++|+|+.|+=-++.|.- ..+.+ .|+--+..+|+.. +..|..+.-+|.++|
T Consensus 53 FP~l~~~Ai~a~~DLcEDed--------------------~~iR~----~aik~lp~~ck~~---~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDED--------------------VQIRK----QAIKGLPQLCKDN---PEHVSKVADVLVQLL 105 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SS--------------------HHHHH----HHHHHGGGG--T-----T-HHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHhccc--------------------HHHHH----HHHHhHHHHHHhH---HHHHhHHHHHHHHHH
Confidence 56777777777777766642 33445 6666777888763 237888888888888
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy15268 137 RHEDTHISDAALRCFAS 153 (256)
Q Consensus 137 ~~~D~~vv~~ac~als~ 153 (256)
+.+|+.-++-+=++|..
T Consensus 106 ~tdd~~E~~~v~~sL~~ 122 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMS 122 (556)
T ss_dssp T---HHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 88887766666666533
No 79
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=77.27 E-value=8.5 Score=30.49 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc
Q psy15268 14 TARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA 76 (256)
Q Consensus 14 AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~ 76 (256)
--|.|.|++-..++--.. +.+.|.+|.+.+.-. ++ -.+.=+.|.|+||+.|++..++
T Consensus 6 lvrlianl~~~~~~~Qd~-vr~~~Gi~liL~~c~--iD---~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 6 LVRLIANLCYKNKEVQDL-VRELGGIPLILSCCN--ID---DHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHhCCHHHHHH-HHHcCChHHHHHhcC--CC---cccHHHHHHHHHHHHHHHhCCH
Confidence 457899999999988866 568899999998654 44 3355699999999999988765
No 80
>PF08723 Gag_p15: Gag protein p15; InterPro: IPR014834 Gag p15 is a viral membrane-binding matrix protein which is alpha helical in structure. ; PDB: 1HEK_B.
Probab=75.83 E-value=11 Score=30.51 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=43.9
Q ss_pred ccchhhhhHHHHHHHH-----hcCCCCCCCCChHHHHHHHHHhh---cCCCHHHHHHHHHHHHHhhhhccCCCCCccchh
Q psy15268 98 SVHKDTLHSAMAVVSR-----LCSKMEPQDPQLPEAVEALSLLL---RHEDTHISDAALRCFASLSDRFTRRGVDPAPLA 169 (256)
Q Consensus 98 ~~qr~~l~~a~~~vsN-----lCr~~~~~~~~v~~~lP~L~~lL---~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~ 169 (256)
+.||=|-.|+.|.++- =|+.....|...++++|.|..+. ...|.+-.+..+|+++.+--|. +|+.|-
T Consensus 20 G~qkLT~GNC~Walslvdl~hDt~~~kEkdWql~d~~plLedV~qtlsg~e~eafe~TwwaI~aVkmGl-----Qi~~v~ 94 (123)
T PF08723_consen 20 GSQKLTEGNCNWALSLVDLYHDTNFEKEKDWQLRDVIPLLEDVSQTLSGQEKEAFEATWWAIVAVKMGL-----QIETVQ 94 (123)
T ss_dssp SS-B--HHHHHHHHHHHHHHTT--CCCSS---HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHTT--------SCCC
T ss_pred ccccccccchHHHHHHHHHHhhccccccccchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcC-----Cccchh
Confidence 3455555677777764 36666677779999999998874 4568999999999999998886 455555
Q ss_pred cc
Q psy15268 170 QH 171 (256)
Q Consensus 170 ~~ 171 (256)
|.
T Consensus 95 D~ 96 (123)
T PF08723_consen 95 DA 96 (123)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 81
>KOG1241|consensus
Probab=74.96 E-value=22 Score=37.57 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCcHHHHHHHhhcccCCCCCCcHH---HHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcc-c-Cccc-chhhhhHHHH
Q psy15268 36 DGAMKAICSRLSLGAGIASRTSKD---LAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQ-H-GHSV-HKDTLHSAMA 109 (256)
Q Consensus 36 ~gAVp~L~~~L~~~i~~~~~~~~D---laEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldf-f-~~~~-qr~~l~~a~~ 109 (256)
.+.+|.|.++|.+.-| -.+.| .+--|=-||+..++-.++ ..++.+|.|+.. + +... +| .|-
T Consensus 318 ~~v~P~Ll~~L~kqde---~~d~DdWnp~kAAg~CL~l~A~~~~D-----~Iv~~Vl~Fiee~i~~pdwr~r----eaa- 384 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDE---DDDDDDWNPAKAAGVCLMLFAQCVGD-----DIVPHVLPFIEENIQNPDWRNR----EAA- 384 (859)
T ss_pred hHhhHHHHHHHHhCCC---CcccccCcHHHHHHHHHHHHHHHhcc-----cchhhhHHHHHHhcCCcchhhh----hHH-
Confidence 3668999998872222 22333 344444555555554444 445589999973 2 2222 34 222
Q ss_pred HHHHhcC-CCCCCC---CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 110 VVSRLCS-KMEPQD---PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 110 ~vsNlCr-~~~~~~---~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+++--|- .-|.++ +.|.+++|.+.+++.-.--.|.+.+-|+|.|++|..
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 2232332 222222 389999999999988444567889999999999985
No 82
>KOG1820|consensus
Probab=74.27 E-value=44 Score=35.59 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEA 82 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~ 82 (256)
++.|.-.+. .||-+|+-|+.++..-.... ..+..|.|.+++. +. +..+.|-.+.++..|.. .
T Consensus 305 kDaN~~v~~-~aa~~l~~ia~~lr~~~~~~--~~~v~p~lld~lk-ek------k~~l~d~l~~~~d~~~n--------s 366 (815)
T KOG1820|consen 305 KDANINVVM-LAAQILELIAKKLRPLFRKY--AKNVFPSLLDRLK-EK------KSELRDALLKALDAILN--------S 366 (815)
T ss_pred cCcchhHHH-HHHHHHHHHHHhcchhhHHH--HHhhcchHHHHhh-hc------cHHHHHHHHHHHHHHHh--------c
Confidence 345655666 89999999999999887543 5688999999998 43 56788888888877765 5
Q ss_pred CcHHHHHHhhccc-Cc--ccchhhhhHHHHHHHHhcC-CCCCCC---CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 83 GGLASVLLFIKQH-GH--SVHKDTLHSAMAVVSRLCS-KMEPQD---PQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 83 G~l~alL~~ldff-~~--~~qr~~l~~a~~~vsNlCr-~~~~~~---~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
+.+..+..++-.+ .. .-+| .-+|...+.|- +.++.. +.+..+.|.+....+-.|+.|...|..|+.-+.
T Consensus 367 ~~l~~~~~~I~e~lk~knp~~k----~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 367 TPLSKMSEAILEALKGKNPQIK----GECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred ccHHHHHHHHHHHhcCCChhhH----HHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 5555555555322 22 2233 55566655554 444332 389999999999999999999999999998877
Q ss_pred hhc
Q psy15268 156 DRF 158 (256)
Q Consensus 156 d~~ 158 (256)
.-+
T Consensus 443 k~~ 445 (815)
T KOG1820|consen 443 KVH 445 (815)
T ss_pred HHh
Confidence 543
No 83
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=73.23 E-value=9.2 Score=31.92 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELIC 72 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is 72 (256)
.+.+.+. ++.|||-.|+.-..... .++-+.+.|..|+.-|. +++..+..+++..|.-+|
T Consensus 128 ~~~~~~~-~~l~Clkal~n~~~G~~-~v~~~~~~v~~i~~~L~-------s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEH-ECLRCLKALMNTKYGLE-AVLSHPDSVNLIALSLD-------SPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHH-HHHHHHHHHTSSHHHHH-HHHCSSSHHHHHHHT---------TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHHccHHHHH-HHHcCcHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Confidence 4566777 99999999998766544 55557899999998665 458899999999998765
No 84
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=70.31 E-value=25 Score=36.32 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhccccchh--hhcCcHHHHHHhhccc-CcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHh
Q psy15268 60 LAEQCIKVLELICTREAGSV--FEAGGLASVLLFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLL 135 (256)
Q Consensus 60 laEQal~aLe~Is~d~~~~V--l~~G~l~alL~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~l 135 (256)
|----+-.|+-|-+..|..| .+.--+.-.++.+..- ++.++- -....++++-......-+ ++...+|.|.+-
T Consensus 572 lqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~----dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~a 647 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG----DVYTAISALSTSLEERFEQYASKFIPYLTRA 647 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33334444555554443321 1111233344444432 333444 445567777665533333 899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 136 LRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 136 L~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
|+..|..|...|.--+..|+... ++++....+ .+..+|+|-|++
T Consensus 648 ln~~d~~v~~~avglvgdlantl---~~df~~y~d-~~ms~LvQ~lss 691 (858)
T COG5215 648 LNCTDRFVLNSAVGLVGDLANTL---GTDFNIYAD-VLMSSLVQCLSS 691 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHh---hhhHHHHHH-HHHHHHHHHhcC
Confidence 99999999999999999888775 355655553 577888888865
No 85
>KOG1240|consensus
Probab=68.12 E-value=18 Score=39.92 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=77.5
Q ss_pred hCCc---HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHH
Q psy15268 35 IDGA---MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVV 111 (256)
Q Consensus 35 ~~gA---Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~v 111 (256)
.+|| |+.+++-+. .+ .+.+..--|+..|...|..-.+.+.=..+++-++.++......+|- .|+-++
T Consensus 417 ~~ga~l~vs~lts~IR-~l-----k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra----~Al~Tl 486 (1431)
T KOG1240|consen 417 EEGAVLFVSVLTSCIR-AL-----KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRA----TALETL 486 (1431)
T ss_pred ccceeeeHHHHHHHHH-hh-----hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHH----HHHHHH
Confidence 5566 677777666 43 3677777777777777777666666566666666666666667777 677676
Q ss_pred HHh---cCCCCCCCC--ChHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhhhh
Q psy15268 112 SRL---CSKMEPQDP--QLPEAVEALSLLLRHED-THISDAALRCFASLSDR 157 (256)
Q Consensus 112 sNl---Cr~~~~~~~--~v~~~lP~L~~lL~~~D-~~vv~~ac~als~L~d~ 157 (256)
..+ .|.+++.|. ++.-++|.|..+++.++ ..|.-.-..|++-|++-
T Consensus 487 t~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 487 TELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 654 466677774 78999999999988744 44444445556665543
No 86
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=67.88 E-value=41 Score=32.99 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhc--ccCcccchhhhhHHHHHHHHhcCCCCCCC-C--ChHH--HH
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIK--QHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P--QLPE--AV 129 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ld--ff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~--~v~~--~l 129 (256)
..++.+++-+++.|+++.+-+ +-.+..+..++. .....-.-..+|-|+.++..+-.+..... + .... ++
T Consensus 228 ~~~l~~~~w~~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 228 SVSLCKPSWRTMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccccchhHHHHHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 348999999999999987532 223455666662 11111122456799999998887763333 2 4566 99
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 130 EALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 130 P~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
|.|.+.++..+..|--.+...+.++.+
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 999999999999888899999999984
No 87
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=66.26 E-value=2.5 Score=33.50 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCCCCCCChH--HHHHHHHHh--hcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhcccc
Q psy15268 106 SAMAVVSRLCSKMEPQDPQLP--EAVEALSLL--LRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGL 173 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~~~v~--~~lP~L~~l--L~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~gl 173 (256)
..+.+++|+|-+-+..-..++ .-+|.+-+- +...+|-+.|-|.||+-+|+++-..+.+.+..+-..|.
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~ 76 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGV 76 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCC
Confidence 566799999965422222332 346665444 45557999999999999999985433344444443343
No 88
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=66.26 E-value=19 Score=29.97 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCc
Q psy15268 138 HEDTHISDAALRCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASS 216 (256)
Q Consensus 138 ~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 216 (256)
.+|..+....+.||-.|.+. ..-++.++++ +.++.|...|.+ .++
T Consensus 127 ~~~~~~~~~~l~Clkal~n~----~~G~~~v~~~~~~v~~i~~~L~s------------------------------~~~ 172 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNT----KYGLEAVLSHPDSVNLIALSLDS------------------------------PNI 172 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSS----HHHHHHHHCSSSHHHHHHHT--T------------------------------TSH
T ss_pred chhHHHHHHHHHHHHHHHcc----HHHHHHHHcCcHHHHHHHHHHCC------------------------------CCH
Confidence 46677777888888887754 1235666664 788888888742 234
Q ss_pred chHHHHHHHHHHHh
Q psy15268 217 GSVSTIVSLLSALC 230 (256)
Q Consensus 217 ~~~~~~l~~Ls~l~ 230 (256)
.+-..++.+|+.+|
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67778999999988
No 89
>KOG1061|consensus
Probab=66.10 E-value=11 Score=39.35 Aligned_cols=117 Identities=12% Similarity=0.149 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL 136 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL 136 (256)
+.|.+-++++|+|+++....+. ++.+.-+|.++.+--..+-. -+.-++-++-|+-|... +.+++.+..-+
T Consensus 363 D~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvq----E~~vvi~dilRkyP~~~---~~vv~~l~~~~ 432 (734)
T KOG1061|consen 363 DVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQ----EAIVVIRDILRKYPNKY---ESVVAILCENL 432 (734)
T ss_pred CHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceee----ehhHHHHhhhhcCCCch---hhhhhhhcccc
Confidence 4788999999999999876665 88899999999865433322 45667777777764432 55566666555
Q ss_pred cC-CCHHHHHHHHHHHHHhhhhccCCCCCccchh----------ccccHHHHHHHhcc
Q psy15268 137 RH-EDTHISDAALRCFASLSDRFTRRGVDPAPLA----------QHGLASELLIRLSN 183 (256)
Q Consensus 137 ~~-~D~~vv~~ac~als~L~d~~~~~~~~i~~l~----------~~glv~~Lv~LL~~ 183 (256)
.+ +||+......|-+-.-++.+.+..+.++.++ ...++.+.+++...
T Consensus 433 ~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~ 490 (734)
T KOG1061|consen 433 DSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLK 490 (734)
T ss_pred cccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhc
Confidence 43 6788888888888776666544334333333 33466666666543
No 90
>KOG1943|consensus
Probab=65.67 E-value=37 Score=37.12 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=89.0
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-h-h---h
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-S-V---F 80 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~-V---l 80 (256)
++.... .|||||.++..-.|+.. .++..|.+++... ++..+..+-+..+.+.+.+-... . + +
T Consensus 557 d~~ire-laa~aL~~Ls~~~pk~~-----a~~~L~~lld~~l-------s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l 623 (1133)
T KOG1943|consen 557 DVKIRE-LAAYALHKLSLTEPKYL-----ADYVLPPLLDSTL-------SKDASMRHGVFLAAGEVIGALRKLEPVIKGL 623 (1133)
T ss_pred cHHHHH-HHHHHHHHHHHhhHHhh-----cccchhhhhhhhc-------CCChHHhhhhHHHHHHHHHHhhhhhhhhhhh
Confidence 344555 99999999888878765 3456677776665 44688888888888888765332 1 1 2
Q ss_pred hcCcHHHHHHhhc-ccCcccch---hhhhHHHHHHHHhcCCCCCC-C--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy15268 81 EAGGLASVLLFIK-QHGHSVHK---DTLHSAMAVVSRLCSKMEPQ-D--PQLPEAVEALSLLLRHEDTHISDAALRCFAS 153 (256)
Q Consensus 81 ~~G~l~alL~~ld-ff~~~~qr---~~l~~a~~~vsNlCr~~~~~-~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~ 153 (256)
....+..+++.+- |+.-..|| +.++.++.-.-..|.-..+. . +.+...--.+.+.+.+.. .+.+.|.|+++.
T Consensus 624 ~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~ 702 (1133)
T KOG1943|consen 624 DENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSD 702 (1133)
T ss_pred HHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHH
Confidence 3333333322222 11122233 36667777666666543222 2 244445566666664333 788999999999
Q ss_pred hhhhccCCCCCcc
Q psy15268 154 LSDRFTRRGVDPA 166 (256)
Q Consensus 154 L~d~~~~~~~~i~ 166 (256)
++..+...++.-+
T Consensus 703 l~s~y~~~d~~~~ 715 (1133)
T KOG1943|consen 703 LVSTYVKADEGEE 715 (1133)
T ss_pred HHHHHHhcCchhh
Confidence 9987755444333
No 91
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=65.38 E-value=14 Score=31.30 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 106 SAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+++-++.-+|..-|. .+.+.+|.+...|+.+|+.|...|..++++|...
T Consensus 7 n~i~~l~DL~~r~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 7 NAIIALGDLCIRYPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHhCcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 777788888876543 8899999999999999999999999999998854
No 92
>KOG4535|consensus
Probab=65.31 E-value=10 Score=38.33 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhccCchhhhHHH-HhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc------ccchhhhcC
Q psy15268 11 LEVTARAMTYYLDVSAECTRRIV-AIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR------EAGSVFEAG 83 (256)
Q Consensus 11 l~~AaraLTni~~~~p~~t~~iv-v~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d------~~~~Vl~~G 83 (256)
.+-|+|++.||-++.-.-+..+- ...-++-.++.++.+..-.++.....|...++.+|||...- .+..-+..|
T Consensus 450 r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~ 529 (728)
T KOG4535|consen 450 RAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEE 529 (728)
T ss_pred HHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHH
Confidence 34899999999765432221100 01111223333332122112222345778899999998763 122334444
Q ss_pred cHHHHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCC--CC-CChHHHHHHHHHhh-cCCCHHHHHHHHHHHHHh
Q psy15268 84 GLASVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEP--QD-PQLPEAVEALSLLL-RHEDTHISDAALRCFASL 154 (256)
Q Consensus 84 ~l~alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~--~~-~~v~~~lP~L~~lL-~~~D~~vv~~ac~als~L 154 (256)
.+..++.-.- ...-.+|- ||-.+++|+.+|-.- .+ +--..++|+|..|+ ++.+-+|..+|--+++--
T Consensus 530 ~~~~l~~~v~~~~~~kV~W----NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 530 SIQALISTVLTEAAMKVRW----NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HHHhcccceecccccccch----HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 4433332221 11224666 999999999988533 34 36789999999995 577888888877776543
No 93
>KOG4646|consensus
Probab=65.00 E-value=9.1 Score=32.58 Aligned_cols=119 Identities=12% Similarity=0.066 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHHHHHHhccccc--hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHH--H
Q psy15268 54 SRTSKDLAEQCIKVLELICTREAG--SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEA--V 129 (256)
Q Consensus 54 ~~~~~DlaEQal~aLe~Is~d~~~--~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~--l 129 (256)
+-+++|-.||.+--|.|.+=|--. ...+..++.- |+|-.+..-+. ...-++--+.|+|-.+... ..|.++ +
T Consensus 27 ~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdl---Fvdsl~e~ne~-LvefgIgglCNlC~d~~n~-~~I~ea~g~ 101 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDL---FVDSLEEQNEL-LVEFGIGGLCNLCLDKTNA-KFIREALGL 101 (173)
T ss_pred HhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHH---HHHHhhcccHH-HHHHhHHHHHhhccChHHH-HHHHHhcCC
Confidence 456899999999999999888443 3455555554 33322222222 1224566778888543111 244444 3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHH
Q psy15268 130 EALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180 (256)
Q Consensus 130 P~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~L 180 (256)
|.+-..+.+.-..++-.|...+.+++++- ....+++....+++-+.+-
T Consensus 102 plii~~lssp~e~tv~sa~~~l~~l~~~~---Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 102 PLIIFVLSSPPEITVHSAALFLQLLEFGE---RTERDELLSPAVVRTVQRW 149 (173)
T ss_pred ceEEeecCCChHHHHHHHHHHHHHhcCcc---cchhHHhccHHHHHHHHHH
Confidence 54455577778889999999999999984 3455666666655554443
No 94
>KOG3678|consensus
Probab=64.01 E-value=20 Score=36.29 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchhhhcCcHH
Q psy15268 10 VLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSVFEAGGLA 86 (256)
Q Consensus 10 ~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~Vl~~G~l~ 86 (256)
-. +|+|-|-.++..-. -.+ |++.| ...+...-. + +...|++.-..-.||++-.. -...++.+||+.
T Consensus 199 Rv-e~~rlLEq~~~aeN--~d~-va~~~-~~~Il~lAK-~-----~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD 267 (832)
T KOG3678|consen 199 RV-EAARLLEQILVAEN--RDR-VARIG-LGVILNLAK-E-----REPVELARSVAGILEHMFKHSEETCQRLVAAGGLD 267 (832)
T ss_pred HH-HHHHHHHHHHhhhh--hhH-Hhhcc-chhhhhhhh-h-----cCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccc
Confidence 44 89999999887443 334 34555 344433222 2 23678888888999988554 334688999999
Q ss_pred HHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHH-HHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 87 SVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVE-ALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 87 alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP-~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++|.+.+-... +.||.+.-.+.||--+--..- -.|+.=.| -|--|-.+.|.-..-.||.|++-|+..
T Consensus 268 ~vl~~~rRt~P----~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 268 AVLYWCRRTDP----ALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hheeecccCCH----HHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 99987764444 445589889999865432221 12322222 222233556888888999999998854
No 95
>KOG1293|consensus
Probab=63.41 E-value=74 Score=33.06 Aligned_cols=154 Identities=11% Similarity=0.081 Sum_probs=108.5
Q ss_pred CCcHHHHHHHHHHHHHHhcccc---chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHH
Q psy15268 55 RTSKDLAEQCIKVLELICTREA---GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAV 129 (256)
Q Consensus 55 ~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~l 129 (256)
..+.|..--++-++-+.++--. ...=+..+..++++.+-...+.++. .++-++.|+.-.-.+.. +.-...+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~----~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMG----ITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHH----HHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 3467777777777766655310 1133567889999999877788888 88889999987654443 3455677
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccc
Q psy15268 130 EALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLA 209 (256)
Q Consensus 130 P~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (256)
..|...+...|..+...+.|.+..+.=+ .++..+......+-.+.+--+.+..
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~---~de~~k~~~~~ki~a~~i~~l~nd~------------------------ 516 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFN---CDEEEKFQLLAKIPANLILDLINDP------------------------ 516 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhc---chHHHHHHHHHHhhHHHHHHHHhCC------------------------
Confidence 7888888999999999999999998844 2333444444444444444443321
Q ss_pred cccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 210 TEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 210 ~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
-+...-+++.+|.++.++|-+...-|+++.
T Consensus 517 -----d~~Vqeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 517 -----DWAVQEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred -----CHHHHHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 236677899999999999999888888764
No 96
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.38 E-value=1.2e+02 Score=29.89 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh---
Q psy15268 60 LAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL--- 136 (256)
Q Consensus 60 laEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL--- 136 (256)
.-+.|+..++-|..-+ .+-.+.+..++..|-- ++...+.=+.++-++.|+|+.. .-..++-.|..+|
T Consensus 193 di~~~L~vldaii~y~---~iP~~sl~~~i~vLCs--i~~~~~l~~~~w~~m~nL~~S~-----~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 193 DIEACLSVLDAIITYG---DIPSESLSPCIEVLCS--IVNSVSLCKPSWRTMRNLLKSH-----LGHSAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHcC---cCChHHHHHHHHHHhh--HhcccccchhHHHHHHHHHcCc-----cHHHHHHHHHHHHccc
Confidence 3388888887775521 2233455666666652 2222222237777899999753 4466777777777
Q ss_pred ---cCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccc--cHHHHHHHhc
Q psy15268 137 ---RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHG--LASELLIRLS 182 (256)
Q Consensus 137 ---~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~g--lv~~Lv~LL~ 182 (256)
+.+|..++-.|...|..+.-+.. .+.+..+--.- +++.+.+-|.
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~--~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSG--EQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccc--cCCcceecccHHHHHHHHHHHHh
Confidence 23566778888888888776642 23444443333 6677777665
No 97
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=60.05 E-value=1.2e+02 Score=30.01 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-Ch-------HHHHHHHHHh
Q psy15268 64 CIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QL-------PEAVEALSLL 135 (256)
Q Consensus 64 al~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v-------~~~lP~L~~l 135 (256)
-++.+++.. .....++..+-...-.|+........-++++..+..+.-+++..|.--. .+ ...-|.+ .+
T Consensus 33 ~ik~~d~~~--~~~~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~l 109 (429)
T cd00256 33 FIKALEKKR--VKEEILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NL 109 (429)
T ss_pred HHHHHHhHH--HHHHHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HH
Confidence 455555542 2223333322222333333323333346667888888888776432111 11 1223333 47
Q ss_pred hcCCCHHHHHHHHHHHHHhhhh
Q psy15268 136 LRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 136 L~~~D~~vv~~ac~als~L~d~ 157 (256)
|+++|.-+...++..++.+...
T Consensus 110 L~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 110 LNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HcCCchhHHHHHHHHHHHHHhc
Confidence 8899999999999999999853
No 98
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=59.98 E-value=41 Score=32.82 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=18.2
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHh
Q psy15268 39 MKAICSRLSLGAGIASRTSKDLAEQCIKVLELIC 72 (256)
Q Consensus 39 Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is 72 (256)
+..|++.|. ....++.--+..+||.|-
T Consensus 88 ~~~L~~~L~-------d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 88 LRSVLAVLQ-------AGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHhc-------CCCHHHHHHHHHHHhcCC
Confidence 577777665 224567778888887763
No 99
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=59.72 E-value=76 Score=30.59 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcccc---chhhhcCcHHHHHHhhcccCcccchhhhhHHHH--HHHHhcCCCCCCCC--ChHHHHHHHHHh
Q psy15268 63 QCIKVLELICTREA---GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMA--VVSRLCSKMEPQDP--QLPEAVEALSLL 135 (256)
Q Consensus 63 Qal~aLe~Is~d~~---~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~--~vsNlCr~~~~~~~--~v~~~lP~L~~l 135 (256)
+|+..|+.+-...+ ......||+..+..-|.+- +.+ +.- -..+--.+.++... .+. ..-
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E---v~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 68 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE---VDF-----ALEENKNEEAGSGIPPEYKESSVD------GYS 68 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH---HHH-----HHhcccccCCCCCCCCCccccccc------ccc
Confidence 46777777765554 3467789999888877532 111 000 01112222222211 111 001
Q ss_pred hcCCCHHHHHHHHHHHHHhhh-hccCCCCCccchhc-cccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccc
Q psy15268 136 LRHEDTHISDAALRCFASLSD-RFTRRGVDPAPLAQ-HGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAK 213 (256)
Q Consensus 136 L~~~D~~vv~~ac~als~L~d-~~~~~~~~i~~l~~-~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
+.+.-...+...+..+.++.. +. ...+.+..++| ..+...|..++.+. ..
T Consensus 69 i~~~r~~llK~lLk~l~~~~~~~~-~~~~~lrnl~D~s~L~~sL~~Il~n~---------------------------~~ 120 (379)
T PF06025_consen 69 ISYQRQQLLKSLLKFLSHAMQHSG-GFGDRLRNLIDSSSLLSSLKHILENP---------------------------EV 120 (379)
T ss_pred cCHHHHHHHHHHHHHHHHHhccCC-CcccccccccchhhHHHHHHHHHhCc---------------------------cc
Confidence 122223455556666666665 21 24578999999 67888888888764 23
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhhhhc
Q psy15268 214 ASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCPRI 254 (256)
Q Consensus 214 ~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~~~~ 254 (256)
=++..+...+.+++..-...|..-..|.+.++++++..++.
T Consensus 121 FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 121 FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 56688999999999999999999999999999999887764
No 100
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=58.85 E-value=32 Score=31.41 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhc---ccC-C-CCCCcHHHHHHHHHHHHHHhcc--
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSL---GAG-I-ASRTSKDLAEQCIKVLELICTR-- 74 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~---~i~-~-~~~~~~DlaEQal~aLe~Is~d-- 74 (256)
+|++.++... .++++|..+++-.+........+.|-.+.|-+-|.. -++ + .+.....+-+.+.-||-.+..-
T Consensus 128 lDD~~~~~K~-~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~ 206 (282)
T PF10521_consen 128 LDDYSPEIKI-QGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQE 206 (282)
T ss_pred hcCCCHHHHH-HHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence 6888999999 999999999998876652222344543333322210 111 0 0122456888888888777431
Q ss_pred ----cc-----chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCC
Q psy15268 75 ----EA-----GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHED 140 (256)
Q Consensus 75 ----~~-----~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D 140 (256)
.+ +.+++.|.+..+....++-.....+ ..+..+..+++.+...-- ++++++|.|.+.+...|
T Consensus 207 ~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~----~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 207 NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT----VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred cCCcccchHHHHHHHHHHHhhhceeccccCchhHHH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 11 2466676666554444421222222 444455556655544443 89999999998877654
No 101
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.82 E-value=18 Score=30.07 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=57.9
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 110 VVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 110 ~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.+-.+|-.++..+...++++-.|...|+|.|+++.-.|+.-+-.++.+.- ...-+++++.+++..|++++..
T Consensus 20 ~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 20 LILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG--KRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHhcc
Confidence 44567877766555889999999999999999999999988888887641 2345678888999999999964
No 102
>KOG2734|consensus
Probab=58.50 E-value=50 Score=33.02 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh--ccCCC----CCccchhccccHHHHHHHhcccCCCCCCcCCCCCCC
Q psy15268 125 LPEAVEALSLLLRHEDTHISDAALRCFASLSDR--FTRRG----VDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGAN 198 (256)
Q Consensus 125 v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~--~~~~~----~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~ 198 (256)
--++++.|-+||.|+..+|.-.+.--+--|+|- +..+. ..|+++++.++++-|++=+..-.-+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEs----------- 191 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDES----------- 191 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhc-----------
Confidence 467899999999999999999999988889874 22222 3577888889988888766421110
Q ss_pred ccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHH
Q psy15268 199 VSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAI 249 (256)
Q Consensus 199 ~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l 249 (256)
..--...+.-.+.++-++...-|.+.....+.++-.++
T Consensus 192 -------------vkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WL 229 (536)
T KOG2734|consen 192 -------------VKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWL 229 (536)
T ss_pred -------------chhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHH
Confidence 12234566778888889999999999998888765554
No 103
>KOG1060|consensus
Probab=58.30 E-value=1.8e+02 Score=31.24 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCC
Q psy15268 123 PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSN 188 (256)
Q Consensus 123 ~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~ 188 (256)
+-++-.+....-+|++..+-|+-.+|.++.+++-.- -...+++.|++||..+.+++
T Consensus 283 ~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----------~~~~i~kaLvrLLrs~~~vq 338 (968)
T KOG1060|consen 283 PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----------QVTKIAKALVRLLRSNREVQ 338 (968)
T ss_pred ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----------HHHHHHHHHHHHHhcCCcch
Confidence 467888888899999999999999999999998541 12367899999997655543
No 104
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=56.94 E-value=8.5 Score=28.64 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhh
Q psy15268 104 LHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDT-HISDAALRCFASLS 155 (256)
Q Consensus 104 l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~-~vv~~ac~als~L~ 155 (256)
+|.|+|++.|.+....--.. .-.+++|.+.++-++.+- .+.--+..++.-++
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 56999999999975322222 334799999999776664 45555555665555
No 105
>KOG2611|consensus
Probab=55.67 E-value=30 Score=34.99 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcC-CCHH------HHHHHHHHHHHhhhhccCCCCCccchhccccHHHH
Q psy15268 106 SAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRH-EDTH------ISDAALRCFASLSDRFTRRGVDPAPLAQHGLASEL 177 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~-~D~~------vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~L 177 (256)
-++.+++-.||--+-.. +.+-+.+|.|..++.. .|++ +++|+..|+..++.. +.-++.++..|-++.+
T Consensus 82 i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~----e~G~~~Lia~G~~~~~ 157 (698)
T KOG2611|consen 82 ISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA----EAGLMTLIASGGLRVI 157 (698)
T ss_pred HHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC----CchhHHHHhcCchHHH
Confidence 67888999998754444 4888999999999753 4566 999999999888754 4578999999999999
Q ss_pred HHHhcccC
Q psy15268 178 LIRLSNAA 185 (256)
Q Consensus 178 v~LL~~~~ 185 (256)
-|.-.-++
T Consensus 158 ~Q~y~~~~ 165 (698)
T KOG2611|consen 158 AQMYELPD 165 (698)
T ss_pred HHHHhCCC
Confidence 98764333
No 106
>KOG0213|consensus
Probab=54.31 E-value=32 Score=36.60 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=52.8
Q ss_pred CCCCCchhH---HHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch
Q psy15268 2 LDDTAPENV---LEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS 78 (256)
Q Consensus 2 L~~~~p~~~---l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~ 78 (256)
|+|..|+.. + -|-.|++|....+..+-. ..|-+|.|.--|. .....+.|-|+..+|.|+.++|..
T Consensus 850 lgeeypEvLgsIL-gAikaI~nvigm~km~pP----i~dllPrltPILk-------nrheKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 850 LGEEYPEVLGSIL-GAIKAIVNVIGMTKMTPP----IKDLLPRLTPILK-------NRHEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred cCcccHHHHHHHH-HHHHHHHHhccccccCCC----hhhhcccchHhhh-------hhHHHHHHHHHHHHHHHHhcCccc
Confidence 566666653 4 778888888765554442 3466777766565 235789999999999999998875
Q ss_pred hhhcCcHHHHHHhhc
Q psy15268 79 VFEAGGLASVLLFIK 93 (256)
Q Consensus 79 Vl~~G~l~alL~~ld 93 (256)
|=-.-=+..|..+++
T Consensus 918 v~aREWMRIcfeLle 932 (1172)
T KOG0213|consen 918 VSAREWMRICFELLE 932 (1172)
T ss_pred CCHHHHHHHHHHHHH
Confidence 433333444444444
No 107
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=53.85 E-value=34 Score=28.81 Aligned_cols=75 Identities=11% Similarity=0.238 Sum_probs=54.2
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
-+-..++.+++..+...+...+.. .++.++.+.++....+. +++.+++|.+-+.++..++...|...+-++.|+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~---~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHT---AVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344456677777777666555441 56666677776655555 5999999999999997777999998888887763
No 108
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.73 E-value=30 Score=28.11 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 111 VSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 111 vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+-.+|-.++..+...++++..|...|+|.++++.-.|..-+-.++.+.. ...-.++.+.+++.+|+.++..
T Consensus 21 ~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg--~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 21 ILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG--SKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHhHHHHHHHHHHHcC
Confidence 3466766655555889999999999999999999999999888887631 2344677788999999999864
No 109
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.58 E-value=24 Score=29.28 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=56.6
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 109 AVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 109 ~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
..+-.+|-.++..+...++++-.|...|+|.++++.-.|+..+-.++.+.- ...-+.+++.+++..+++++..
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG--ERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHHhHHHHHHHHHHhcc
Confidence 345577876655545789999999999999999999888888888887641 2234677778999999999963
No 110
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=52.95 E-value=26 Score=29.02 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 110 VVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 110 ~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.+-.+|--++..+..-++++-.|...|+|.++++.-.|+.-+-.++.+.- ...-..+.+.+++.+|++++..
T Consensus 24 ~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas~~fl~~l~~l~~~ 95 (142)
T cd03569 24 SILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG--THFHDEVASREFMDELKDLIKT 95 (142)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHHcc
Confidence 34457766654445789999999999999999999999888888776631 2345678888999999999863
No 111
>KOG0946|consensus
Probab=52.83 E-value=2.1e+02 Score=30.77 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=98.5
Q ss_pred CCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhc
Q psy15268 36 DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLC 115 (256)
Q Consensus 36 ~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlC 115 (256)
+..||.||+|+. +++-.+=+--|+.+|.-.|+.++..|-..| +.++++-+.-- .+--+.+.-++-|+.|+-
T Consensus 21 aETI~kLcDRve------ssTL~eDRR~A~rgLKa~srkYR~~Vga~G-mk~li~vL~~D--~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 21 AETIEKLCDRVE------SSTLLEDRRDAVRGLKAFSRKYREEVGAQG-MKPLIQVLQRD--YMDPEIIKYALDTLLILT 91 (970)
T ss_pred HhHHHHHHHHHh------hccchhhHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHhhc--cCCHHHHHHHHHHHHHHH
Confidence 456999999998 456777788899999999999988877665 78888876311 111233446666667766
Q ss_pred CCCCCC----CC--------Ch-------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhcc-ccHH
Q psy15268 116 SKMEPQ----DP--------QL-------PEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQH-GLAS 175 (256)
Q Consensus 116 r~~~~~----~~--------~v-------~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~-glv~ 175 (256)
++-+.+ ++ .+ ++-+-.|...+.+.|-+|.-.+..-|+.+... |..+-=+.+..+ --|.
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~--r~~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC--RPTELQDALLVSPMGIS 169 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc--CCHHHHHHHHHCchhHH
Confidence 654311 00 01 22233334445555666665555555555532 112222222222 2455
Q ss_pred HHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHH
Q psy15268 176 ELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAI 249 (256)
Q Consensus 176 ~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l 249 (256)
+|+.+|..+-- + +.. ..|=+|..|.++++.+-+-+-=.|+=+.+
T Consensus 170 ~lmdlL~DsrE-------------------------~-IRN----e~iLlL~eL~k~n~~IQKlVAFENaFerL 213 (970)
T KOG0946|consen 170 KLMDLLRDSRE-------------------------P-IRN----EAILLLSELVKDNSSIQKLVAFENAFERL 213 (970)
T ss_pred HHHHHHhhhhh-------------------------h-hch----hHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 66666632100 1 111 35667888999999887766544443333
No 112
>KOG0213|consensus
Probab=52.36 E-value=1.3e+02 Score=32.30 Aligned_cols=97 Identities=12% Similarity=0.273 Sum_probs=61.4
Q ss_pred CCcHHHHHHHHHHHHHHhccccchhhhcCcHHH--------HHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChH
Q psy15268 55 RTSKDLAEQCIKVLELICTREAGSVFEAGGLAS--------VLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLP 126 (256)
Q Consensus 55 ~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~a--------lL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~ 126 (256)
.+..++.+|+....+.|+. |++.-+=.. +..||+.-...+.-.+ -.|+-.+.|.- ++..--+-++
T Consensus 810 nksa~vRqqaadlis~la~-----Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsI-LgAikaI~nvi-gm~km~pPi~ 882 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAK-----VLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSI-LGAIKAIVNVI-GMTKMTPPIK 882 (1172)
T ss_pred CCChhHHHHHHHHHHHHHH-----HHHhccHHHHHHHhhHHHHHhcCcccHHHHHHH-HHHHHHHHHhc-cccccCCChh
Confidence 4578999999988887754 222222222 2334442222222111 14565666654 2222224689
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 127 EAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 127 ~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+++|.|.-+|.+...+|.++..--+-.|+|+.
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~Iadrg 914 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRG 914 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999983
No 113
>KOG2734|consensus
Probab=51.30 E-value=2.1e+02 Score=28.82 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=73.8
Q ss_pred HHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc--------ccc----chhhhcCcHHH
Q psy15268 20 YYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT--------REA----GSVFEAGGLAS 87 (256)
Q Consensus 20 ni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~--------d~~----~~Vl~~G~l~a 87 (256)
+.+...|+--.- .|+-++|+.|.++|. .+ +-|++=-.+..|.-+.- +++ ++.++.+.+.-
T Consensus 109 hvlAt~PdLYp~-lveln~V~slL~LLg--He-----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 109 HVLATMPDLYPI-LVELNAVQSLLELLG--HE-----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HhhhcChHHHHH-HHHhccHHHHHHHhc--CC-----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 456677888764 569999999999886 55 66887777777766532 233 24455555555
Q ss_pred HHHhhccc-----------------------------CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcC
Q psy15268 88 VLLFIKQH-----------------------------GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRH 138 (256)
Q Consensus 88 lL~~ldff-----------------------------~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~ 138 (256)
+++-+.-+ +..+++ ..-.|.+.++|.+ .+-+..-.-+..+|+-+|+.
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~---~ll~WLL~rl~~k-~~f~aNk~YasEiLaillq~ 256 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ---GLLSWLLKRLKGK-AAFDANKQYASEILAILLQN 256 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh---hHHHHHHHHHhcc-cCcchhHHHHHHHHHHHhcc
Confidence 55555311 111222 1345888886654 34444455566666666777
Q ss_pred CCHHH-----HHHHHHHHHHhhh
Q psy15268 139 EDTHI-----SDAALRCFASLSD 156 (256)
Q Consensus 139 ~D~~v-----v~~ac~als~L~d 156 (256)
+|... ++..+..+..|+-
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcch
Confidence 76321 2345556666653
No 114
>KOG1824|consensus
Probab=50.29 E-value=2.2e+02 Score=31.30 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=98.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~V 79 (256)
|++-|+|.|. +|.+||.-+.+..++.-- .-.|..||.++. .- .-+..|+.--.+++ .|+.-.| ..-
T Consensus 56 L~D~ngEVQn-lAVKClg~lvsKvke~~l-----e~~ve~L~~~~~-s~---keq~rdissi~Lkt--vi~nl~P~~~~~ 123 (1233)
T KOG1824|consen 56 LEDKNGEVQN-LAVKCLGPLVSKVKEDQL-----ETIVENLCSNML-SG---KEQLRDISSIGLKT--VIANLPPSSSSF 123 (1233)
T ss_pred HhccCcHHHH-HHHHHHHHHHhhchHHHH-----HHHHHHHhhhhc-cc---hhhhccHHHHHHHH--HHhcCCCccccc
Confidence 5678999999 999999999987776441 133467777755 11 12345666555554 3444443 223
Q ss_pred hhcCcHHHHHHhhccc------CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy15268 80 FEAGGLASVLLFIKQH------GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFAS 153 (256)
Q Consensus 80 l~~G~l~alL~~ldff------~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~ 153 (256)
+...+...+++-+... ...++-..+..---.++|.=.-+++ + =..++-.+.--|++.-.-|...||.|++.
T Consensus 124 la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~--f-h~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 124 LAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN--F-HLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred cccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc--h-HHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 3333333333333210 0012222222333344454433332 2 22222233333567777899999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS 233 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S 233 (256)
++-...+ +-. .++++.|++-|.++ .++....+.|.+|+.+||.+
T Consensus 201 la~~~~~--~ly-----~~li~~Ll~~L~~~-----------------------------~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 201 LASSCNR--DLY-----VELIEHLLKGLSNR-----------------------------TQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred HHHhcCH--HHH-----HHHHHHHHhccCCC-----------------------------CchHHHHHHHHHHHHHHHHh
Confidence 9976422 222 23444555544321 23456778888999988865
No 115
>KOG1824|consensus
Probab=49.12 E-value=1.8e+02 Score=32.05 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=82.9
Q ss_pred cHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHH
Q psy15268 38 AMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG----SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSR 113 (256)
Q Consensus 38 AVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~----~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsN 113 (256)
..|+||+||.++ =-+=-|++||-.|+.-.-+ .++ ..++..+.+|++. .|| .+|.+..++-|
T Consensus 612 ~L~il~eRl~nE---------iTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK----~~r-~lr~~~l~a~~ 676 (1233)
T KOG1824|consen 612 TLPILLERLGNE---------ITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASFLRK----NQR-ALRLATLTALD 676 (1233)
T ss_pred HHHHHHHHHhch---------hHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHHHHH----HHH-HHHHHHHHHHH
Confidence 469999999822 1233588999999875332 233 3356778888853 232 45566555443
Q ss_pred h-cCCC--CCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchh--ccccHHHHHHHhcc
Q psy15268 114 L-CSKM--EPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLA--QHGLASELLIRLSN 183 (256)
Q Consensus 114 l-Cr~~--~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~--~~glv~~Lv~LL~~ 183 (256)
- -.+- .-+...+.-++-.+..|+..+|.++-+.|.-+++++.-++ +..+. ..-+++.++.++.+
T Consensus 677 ~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~------ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 677 KLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ------PSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred HHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc------cHHHHHHhhhhHHHHHHHhhC
Confidence 2 2221 1122367788888889999999999999999999999874 33333 33588999999864
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=49.02 E-value=1.2e+02 Score=25.54 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=39.7
Q ss_pred CcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHH-HHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 96 GHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAV-EALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 96 ~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~l-P~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
...+.+ +|+-+++++-.+ +. .++.-+ ..+..++.-+|++|.+.|..+|..+...
T Consensus 38 ~~~VR~----~al~~Ls~Li~~----d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 38 DPLVRK----TALLVLSHLILE----DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHH----HHHHHHHHHHHc----CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 345556 888888888654 32 444444 6666777888999999999999999866
No 117
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=48.37 E-value=1.9e+02 Score=27.78 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcc--CchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHH
Q psy15268 13 VTARAMTYYLDV--SAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLL 90 (256)
Q Consensus 13 ~AaraLTni~~~--~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~ 90 (256)
.|-+-+..+++. -++.. -.|.|.++++-.. .+...+...|+.+|-.|+-..|+.|.++||+..++.
T Consensus 87 QALkliR~~l~~~~~~~~~-----~~~vvralvaiae-------~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKEI-----PRGVVRALVAIAE-------HEDDRLRRICLETLCELALLNPELVAECGGIRVLLR 154 (371)
T ss_pred HHHHHHHHHHHhcCCcccC-----CHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHH
Confidence 455555556665 22222 2244577777444 235679999999999999999999999999999999
Q ss_pred hhcccCcccchhhhhHHHHHHHHhcCCCC-----CCCCChHHHHHHHHHhh---cCCCH--HHHHHHHHHHHHhhhh
Q psy15268 91 FIKQHGHSVHKDTLHSAMAVVSRLCSKME-----PQDPQLPEAVEALSLLL---RHEDT--HISDAALRCFASLSDR 157 (256)
Q Consensus 91 ~ldff~~~~qr~~l~~a~~~vsNlCr~~~-----~~~~~v~~~lP~L~~lL---~~~D~--~vv~~ac~als~L~d~ 157 (256)
.+-..+....- ..++++-.+--.-. .++..+..++-.++..- ..++. +-+..+..+++.+-..
T Consensus 155 ~l~d~~~~~~~----~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs 227 (371)
T PF14664_consen 155 ALIDGSFSISE----SLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS 227 (371)
T ss_pred HHHhccHhHHH----HHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence 98653223333 45555544442211 11224566666666551 22333 4677777777766543
No 118
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=48.00 E-value=15 Score=30.01 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=56.6
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 110 VVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 110 ~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.+-++|-.++..+...++++-.|...|.|.++++.-.|..-+-.++.+.. +..-..+.+..++..|.+++..
T Consensus 25 ~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg--~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 25 LILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG--PRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHhHHHHHHHHHHHHcc
Confidence 34566766555555789999999999999999999999988888887631 2345677788999999999974
No 119
>KOG1248|consensus
Probab=47.88 E-value=99 Score=34.22 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=76.1
Q ss_pred HHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHH
Q psy15268 65 IKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTH 142 (256)
Q Consensus 65 l~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~ 142 (256)
|-++..|-.++ ..++..+.++.++.++.-|=.+--|.+-+.|+-.+.-+|...|... +++.++||.+..+++-.-.+
T Consensus 806 Ivai~~il~e~-~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~ 884 (1176)
T KOG1248|consen 806 IVAITHILQEF-KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIK 884 (1176)
T ss_pred HHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHH
Confidence 55666665553 2355666677777777655334445556699999999999987766 58999999998877666788
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccchhc
Q psy15268 143 ISDAALRCFASLSDRFTRRGVDPAPLAQ 170 (256)
Q Consensus 143 vv~~ac~als~L~d~~~~~~~~i~~l~~ 170 (256)
+...+-.-|-+++..| ..+.++.++.
T Consensus 885 ~r~Kvr~LlekLirkf--g~~eLe~~~p 910 (1176)
T KOG1248|consen 885 VRKKVRLLLEKLIRKF--GAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHh--CHHHHHhhCH
Confidence 9999999999999888 3466777776
No 120
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=47.77 E-value=45 Score=34.83 Aligned_cols=160 Identities=11% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCCCCchh---HHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch
Q psy15268 2 LDDTAPEN---VLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS 78 (256)
Q Consensus 2 L~~~~p~~---~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~ 78 (256)
|+|..|+. ++ -|..|+++.....+-|-. ..|.+|.|.--|. .....+.+-.+..+|.|+...|..
T Consensus 655 lge~ypEvLgsil-~Ai~~I~sv~~~~~mqpP----i~~ilP~ltPILr-------nkh~Kv~~nti~lvg~I~~~~pey 722 (975)
T COG5181 655 LGEDYPEVLGSIL-KAICSIYSVHRFRSMQPP----ISGILPSLTPILR-------NKHQKVVANTIALVGTICMNSPEY 722 (975)
T ss_pred cCcccHHHHHHHH-HHHHHHhhhhcccccCCc----hhhccccccHhhh-------hhhHHHhhhHHHHHHHHHhcCccc
Confidence 45666665 34 788888888887766653 3577888777665 235778889999999999998874
Q ss_pred hhhcCcHHHHHHhhccc---CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 79 VFEAGGLASVLLFIKQH---GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff---~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
+=-.-=+..|..++|-. .-.+-| +|+.+.--.-|-+.| ++++-+|-+-|..+|.+-....-.|++-++
T Consensus 723 i~~rEWMRIcfeLvd~Lks~nKeiRR----~A~~tfG~Is~aiGP-----qdvL~~LlnnLkvqeRq~RvctsvaI~iVa 793 (975)
T COG5181 723 IGVREWMRICFELVDSLKSWNKEIRR----NATETFGCISRAIGP-----QDVLDILLNNLKVQERQQRVCTSVAISIVA 793 (975)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHH----hhhhhhhhHHhhcCH-----HHHHHHHHhcchHHHHHhhhhhhhhhhhhH
Confidence 43333355566666632 233344 777776655555544 566777766666666554333333333322
Q ss_pred hh---c------cCCCCCccchhccccHHHHHHHhc
Q psy15268 156 DR---F------TRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 156 d~---~------~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+- | -.+-+.+++-++.|+++.+-....
T Consensus 794 e~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 794 EYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 21 1 123456777777787777665543
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=47.16 E-value=1.2e+02 Score=29.61 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=60.4
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
++++.|+..|. .....+..-++.+|++.-. ....+++.+++.-...+.+ .|+.++..+.+
T Consensus 117 ~a~~~L~~~L~-------~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra----~A~raLG~l~~ 176 (410)
T TIGR02270 117 QAEPWLEPLLA-------ASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRA----AALRALGELPR 176 (410)
T ss_pred HHHHHHHHHhc-------CCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHH----HHHHHHHhhcc
Confidence 34566666554 2245677777777776322 2234666777644455556 77777766553
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 117 KMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 117 ~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
. +.+|.|...+.+.|+.|...|.+++..+.+
T Consensus 177 ~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 R---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred c---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 2 456778788999999999999999988754
No 122
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=47.09 E-value=37 Score=31.21 Aligned_cols=115 Identities=20% Similarity=0.182 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcc-----ccchhhhcCcHHHHHHhh--------cccC-------cccchhhhhHHHHHHHHhcCCCC
Q psy15268 60 LAEQCIKVLELICTR-----EAGSVFEAGGLASVLLFI--------KQHG-------HSVHKDTLHSAMAVVSRLCSKME 119 (256)
Q Consensus 60 laEQal~aLe~Is~d-----~~~~Vl~~G~l~alL~~l--------dff~-------~~~qr~~l~~a~~~vsNlCr~~~ 119 (256)
+.|-++=+|-||||. +|+. +..-.+..+|.+. |-|+ .+.|| -|+-++..+|-...
T Consensus 82 lREnalV~laNisgqLdLs~~~e~-I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqr----laLEaLcKLsV~e~ 156 (257)
T PF12031_consen 82 LRENALVTLANISGQLDLSDYPES-IARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQR----LALEALCKLSVIEN 156 (257)
T ss_pred HhhcceEeeeeeeeeeecccCchH-HHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHH----HHHHHHHHhheecc
Confidence 455555566777775 3322 2223344444443 4443 45577 99999999996543
Q ss_pred C-------CCC-ChHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhccCCCCCcc-chh-ccccHHHHHHHhcc
Q psy15268 120 P-------QDP-QLPEAVEALSLLLR-HEDTHISDAALRCFASLSDRFTRRGVDPA-PLA-QHGLASELLIRLSN 183 (256)
Q Consensus 120 ~-------~~~-~v~~~lP~L~~lL~-~~D~~vv~~ac~als~L~d~~~~~~~~i~-~l~-~~glv~~Lv~LL~~ 183 (256)
. +++ .++..+-.|.++|. .+|+-..|-|..-++|++-+- +..- .++ +.+.|..|+..|..
T Consensus 157 NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~----~~~~r~iA~q~~~i~~Li~FiE~ 227 (257)
T PF12031_consen 157 NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD----EAAARAIAMQKPCISHLIAFIED 227 (257)
T ss_pred CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc----HHHHHHHHHhhchHHHHHHHHHH
Confidence 3 233 79999999999986 679999999999999999772 2222 233 34788888888853
No 123
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=47.07 E-value=26 Score=32.05 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC---C----ChHHHHHHHHHhhc--------CCCHHHHHHHH
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD---P----QLPEAVEALSLLLR--------HEDTHISDAAL 148 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~---~----~v~~~lP~L~~lL~--------~~D~~vv~~ac 148 (256)
.+.++|.++|...+.... .++..+..+..+.++.. . ...-..++|...+. .+..+++.-|.
T Consensus 120 iiP~iL~llDD~~~~~K~----~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKI----QGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred HHhhHHHHhcCCCHHHHH----HHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 467888899988777777 78888888888776665 2 24445556666655 34466888888
Q ss_pred HHHHHhhh
Q psy15268 149 RCFASLSD 156 (256)
Q Consensus 149 ~als~L~d 156 (256)
-|+..|..
T Consensus 196 ~~L~~L~~ 203 (282)
T PF10521_consen 196 PALLSLLK 203 (282)
T ss_pred HHHHHHHH
Confidence 88888854
No 124
>KOG4413|consensus
Probab=46.55 E-value=1e+02 Score=30.11 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhcCc---HHHHHHhhcc
Q psy15268 20 YYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEAGG---LASVLLFIKQ 94 (256)
Q Consensus 20 ni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~G~---l~alL~~ldf 94 (256)
|++++.+++. + .+.|+++++-. ||.+..+.|.-|-++-+||.+-.. +.+.+++.|- =.-+..-.|-
T Consensus 289 aimdvseeai---c---ealiiaidgsf---EmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq 359 (524)
T KOG4413|consen 289 AIMDVSEEAI---C---EALIIAIDGSF---EMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ 359 (524)
T ss_pred HHhhcCHHHH---H---HHHHHHHHhhH---HhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc
Q ss_pred cCcccchhhhhHHHHHHHHhcCCCCCCCCChHH----------HHHHHHH------------hhcCCCHHHHHHHHHHHH
Q psy15268 95 HGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPE----------AVEALSL------------LLRHEDTHISDAALRCFA 152 (256)
Q Consensus 95 f~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~----------~lP~L~~------------lL~~~D~~vv~~ac~als 152 (256)
.....|. .++..+.|.-.-..+++.++-+ ++..+++ +++..-+++--.+...|.
T Consensus 360 nahakqe----aaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfT 435 (524)
T KOG4413|consen 360 NAHAKQE----AAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFT 435 (524)
T ss_pred cccchHH----HHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHH
Q ss_pred HhhhhccCCCCCccchhccccHH
Q psy15268 153 SLSDRFTRRGVDPAPLAQHGLAS 175 (256)
Q Consensus 153 ~L~d~~~~~~~~i~~l~~~glv~ 175 (256)
-|+.. ....-+.+.+.|+++
T Consensus 436 Aiaaq---PWalkeifakeefie 455 (524)
T KOG4413|consen 436 AIAAQ---PWALKEIFAKEEFIE 455 (524)
T ss_pred HHHcC---cHHHHHHhcCcccee
No 125
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=46.48 E-value=70 Score=26.65 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c-hhhhcCcHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G-SVFEAGGLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~-~Vl~~G~l~al 88 (256)
.|.=++..+++..++..+..+ ..+++-+....+ .|=--.++.+|..+=.=-| . .....|.++.+
T Consensus 24 ~a~v~l~k~l~~~~~~~~~~~------~~~i~~~~~~~~------~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 24 HALVILSKLLDAAREEFKEKI------SDFIESLLDEGE------MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCHH------CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH------HHHHHHHHcccc------chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 566677777766666554322 333332320222 2222234555555422222 2 34577777777
Q ss_pred HHhhc--ccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhc-CCCHH-HHHHHHHHHHHh
Q psy15268 89 LLFIK--QHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLR-HEDTH-ISDAALRCFASL 154 (256)
Q Consensus 89 L~~ld--ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~-~~D~~-vv~~ac~als~L 154 (256)
+.... .-....|+ .++-.++-.|.++.--.+..++.++.|..+.. .+|.. +...|..+++.|
T Consensus 92 ~~~~~~~~~~~~~~~----~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 92 LPLASRKSKDRKVQK----AALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHH-CTS-HHHHH----HHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHhcccCCHHHHH----HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 77777 44556677 88889999998765555789999999999984 55666 777777777653
No 126
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=46.47 E-value=26 Score=25.45 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHH
Q psy15268 106 SAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASEL 177 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~L 177 (256)
+.+|..+.+= ..|+..+ ..+.+...|..-+.+-++..+-++.|+++.+- .| +.+.++.+.+.+.+.+|
T Consensus 3 ~il~~fa~LN-y~P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~-~~--p~~~l~~vf~~~Fl~~L 71 (71)
T PF06743_consen 3 SILLPFARLN-YQPPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQ-RF--PEDLLNKVFSPDFLQKL 71 (71)
T ss_pred HHHHHHHhcC-CCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh-hC--CHHHHHHHcCHHHHhhC
Confidence 4566666553 3333222 44555566666666778999999999999874 55 45788888888777654
No 127
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.34 E-value=2.1e+02 Score=26.04 Aligned_cols=138 Identities=11% Similarity=0.063 Sum_probs=68.7
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCc----HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-ch
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGA----MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-GS 78 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gA----Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-~~ 78 (256)
.+++..-- -|-++|+.+++..|... ..... +.-+++||. +.....-++.+|.-+.+... ..
T Consensus 10 sed~~~R~-ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~---------D~~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 10 SEDPIIRA-KALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLD---------DHACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred CCCHHHHH-HHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhc---------cHhhHHHHHHHHHHHHhCcCCCh
Confidence 34444444 78899999999988532 12222 345566665 44555555777766653321 00
Q ss_pred hhhcCcHHHHHHhhcccCccc--chhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSV--HKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRH-EDTHISDAALRCFASL 154 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~--qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~-~D~~vv~~ac~als~L 154 (256)
-.-...+..+.+.++. +... .| ..+..++-.+..+-...- ..-.+.+..+.+.+.. .||+.+--+..-+..+
T Consensus 76 ~~~~~i~~~l~~~~~~-q~~~q~~R---~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDV-QSLPQSTR---YAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred hhHHHHHHHHHHhCCh-hhhhHHHH---HHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 0111122223332222 1111 12 234444444443321111 1334555566666654 4888887777777777
Q ss_pred hhhcc
Q psy15268 155 SDRFT 159 (256)
Q Consensus 155 ~d~~~ 159 (256)
...|.
T Consensus 152 ~~~~~ 156 (262)
T PF14500_consen 152 LQEFD 156 (262)
T ss_pred HHhcc
Confidence 76663
No 128
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=45.24 E-value=19 Score=27.98 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=43.9
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHH
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAAL 148 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac 148 (256)
.+.++|..++.....+.. .|.-.+-|+++.....- ++..++++.|.+++.-.|+.|...|+
T Consensus 28 Il~pVL~~~~D~d~rVRy----~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRY----YACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHcCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 367777777665555544 67777778876543322 37899999999999999999776664
No 129
>KOG2759|consensus
Probab=44.38 E-value=1.2e+02 Score=30.02 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=83.1
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEA 82 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~ 82 (256)
++++-+. .|+|||--++-+-+-.- ++| ..+.+..++.-|. |......|-=|.+-++=.+.=..+ ..+-+.
T Consensus 169 ~~~~~~~-~~~rcLQ~ll~~~eyR~-~~v-~adg~~~l~~~l~-----s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~ 240 (442)
T KOG2759|consen 169 TNNDYIQ-FAARCLQTLLRVDEYRY-AFV-IADGVSLLIRILA-----STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRF 240 (442)
T ss_pred CCCchHH-HHHHHHHHHhcCcchhh-eee-ecCcchhhHHHHh-----ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhc
Confidence 7889999 99999999998776655 444 6666777776562 123345555554433333322111 123333
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-------C-ChHHHHHHHHHhh--cCCCHHHHHHHHHHHH
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-------P-QLPEAVEALSLLL--RHEDTHISDAALRCFA 152 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-------~-~v~~~lP~L~~lL--~~~D~~vv~~ac~als 152 (256)
+-+..+...+. ...--++.|-++.++.|+|.+.+... . ..-.+++.+..|. .++|+++++|.-.--.
T Consensus 241 ~li~~L~~Ivk---~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 241 DLIQDLSDIVK---ESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTE 317 (442)
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 44444555553 22233666799999999997753111 1 1223455555553 4789999998766655
Q ss_pred Hhhh
Q psy15268 153 SLSD 156 (256)
Q Consensus 153 ~L~d 156 (256)
.|.+
T Consensus 318 ~L~~ 321 (442)
T KOG2759|consen 318 KLKN 321 (442)
T ss_pred HHHH
Confidence 5543
No 130
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=44.16 E-value=4e+02 Score=27.94 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcH----H
Q psy15268 11 LEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGL----A 86 (256)
Q Consensus 11 l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l----~ 86 (256)
.+.|+-|+-.+++|--+-... -..+.|+|.+.+... -++.-+.|..-||+|.|+.--+..+=..|-+ .
T Consensus 383 reaavmAfGSvm~gp~~~~lT-~~V~qalp~i~n~m~-------D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vs 454 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLT-KIVPQALPGIENEMS-------DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVS 454 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHH-hhHHhhhHHHHHhcc-------cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHH
Confidence 346777889999987766643 457889999876333 3478899999999999987666555444443 4
Q ss_pred HHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC---C-ChHHHHHHHHHh-hcC-----CCHHHHHHHHHHHHHhhh
Q psy15268 87 SVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD---P-QLPEAVEALSLL-LRH-----EDTHISDAALRCFASLSD 156 (256)
Q Consensus 87 alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~---~-~v~~~lP~L~~l-L~~-----~D~~vv~~ac~als~L~d 156 (256)
++|.=+-. +..| .-++-|..-|+.-+.++.+ + .+.+..|.+.+- ++- .|......+..++.-++.
T Consensus 455 a~liGl~D---~p~~--~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 455 ASLIGLMD---CPFR--SINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred HHHhhhhc---cchH--HhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 44443321 2222 2267788888777776655 2 444444544333 322 334455555555555554
No 131
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=44.14 E-value=1.3e+02 Score=25.26 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccc--cHHHHHHHhcccCCCCCCcCCCCCCCccc
Q psy15268 124 QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHG--LASELLIRLSNAAGSNPLNTSLGGANVST 201 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~g--lv~~Lv~LL~~~~~~~~~~~~~~~~~~~~ 201 (256)
.+....--+.++|++.+++-.-.++.-+.-+++.. ..+.+.++| .++.++++|....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-----~~e~l~~~~~~W~~~Ll~~L~~~~~~-------------- 82 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-----SWEILLSHGSQWLRALLSILEKPDPP-------------- 82 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHcCCCCH--------------
Confidence 67777777788888876554433333333333321 245565654 778888888642211
Q ss_pred cccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhhh
Q psy15268 202 ASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 202 ~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~~ 252 (256)
..-......+.-|-...++-|++++++...++|..+.-.
T Consensus 83 ------------~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~l 121 (165)
T PF08167_consen 83 ------------SVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSL 121 (165)
T ss_pred ------------HHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHH
Confidence 112344445555556778888888888877777766543
No 132
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=44.07 E-value=1.2e+02 Score=24.48 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=54.4
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCC-CccchhccccHHHHHHHhcc
Q psy15268 110 VVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGV-DPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 110 ~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~-~i~~l~~~glv~~Lv~LL~~ 183 (256)
++-.+|--++..+..-++++..|...|+|.++++.-.|..-+-.++.+. +. .-..+.+..++..+++++..
T Consensus 20 ~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc---g~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 20 LNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC---GKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC---ChHHHHHHhhHHHHHHHHHHhCC
Confidence 3445665554445588999999999999999999999998888888764 33 33555665888899999864
No 133
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=43.59 E-value=53 Score=28.74 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 123 PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 123 ~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+.+.+.++.|.+-|++.|++|...++.++..|+.+. ..+...++|.+-|+|.
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~--------~~vG~aLvPyyrqLLp 127 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS--------DMVGEALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHHHHH
Confidence 367888888889999999999999999999996541 2333445666555553
No 134
>KOG1943|consensus
Probab=43.23 E-value=1.2e+02 Score=33.47 Aligned_cols=94 Identities=18% Similarity=0.148 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHh
Q psy15268 56 TSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLL 135 (256)
Q Consensus 56 ~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~l 135 (256)
+.-+|+=-+-+-+|+|..+-| ..|-.-++..++.++.|-. --...|.|.-+++-+-+..=-.+..+.+++|.+-.-
T Consensus 353 ~dt~VrWSaAKg~grvt~rlp-~~Lad~vi~svid~~~p~e---~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~ka 428 (1133)
T KOG1943|consen 353 TDTVVRWSAAKGLGRVTSRLP-PELADQVIGSVIDLFNPAE---DDSAWHGACLALAELALRGLLLPSLLEDVVPLILKA 428 (1133)
T ss_pred CcchhhHHHHHHHHHHHccCc-HHHHHHHHHHHHHhcCcCC---chhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 356788888899999999888 4555555666666444332 233456888888888876433334788999999888
Q ss_pred hcCCCHH--------HHHHH---HHHHHH
Q psy15268 136 LRHEDTH--------ISDAA---LRCFAS 153 (256)
Q Consensus 136 L~~~D~~--------vv~~a---c~als~ 153 (256)
|++++.+ |.+.| ||||+|
T Consensus 429 L~Yd~~~G~~s~G~~VRDaAcY~~WAf~R 457 (1133)
T KOG1943|consen 429 LHYDVRRGQHSVGQHVRDAACYVCWAFAR 457 (1133)
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHh
Confidence 8887764 66665 566666
No 135
>KOG1061|consensus
Probab=42.66 E-value=1.1e+02 Score=32.22 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=51.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~ 77 (256)
|++.+|..+. .|+-|..++-+..++.. ...|-++.|-+.+. . ...+|.--|+-+|..|...+++
T Consensus 130 l~d~~~yvRk-taa~~vakl~~~~~~~~----~~~gl~~~L~~ll~-D------~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 130 LKDDDPYVRK-TAAVCVAKLFDIDPDLV----EDSGLVDALKDLLS-D------SNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred ccCCChhHHH-HHHHHHHHhhcCChhhc----cccchhHHHHHHhc-C------CCchHHHHHHHHHHHHHHhCCC
Confidence 5567888888 99999999999888766 36788999988665 1 2467888999999999888774
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.28 E-value=70 Score=26.05 Aligned_cols=59 Identities=8% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELIC 72 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is 72 (256)
++|..+- .||-=|..++.-.|+-- .++-..|+=..+.+++. .++.||+.||+.|+.++-
T Consensus 56 ~d~~~la-Vac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~Lm~-------h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 56 DDPTTLA-VACHDIGEFVRHYPNGR-NIIEKLGAKERVMELMN-------HEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHH-HHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHHHTS--------SSHHHHHHHHHHHHHHH
T ss_pred CCcceee-hhhcchHHHHHHChhHH-HHHHhcChHHHHHHHhc-------CCCHHHHHHHHHHHHHHH
Confidence 3455555 89999999999999865 55556666666665443 348999999999998874
No 137
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=41.02 E-value=43 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred ccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC--hHHHHhhhhc
Q psy15268 213 KASSGSVSTIVSLLSALCRGSPSITSDLLHSD--LPDAIGCPRI 254 (256)
Q Consensus 213 ~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~--l~~~l~~~~~ 254 (256)
+.++.-...+++=+-.+|..+|+.++.||..| +.-++-++++
T Consensus 25 ~l~~~ql~ell~~mK~l~~~~p~~ar~lL~~nPqLa~Al~qa~l 68 (84)
T PF14327_consen 25 SLPPEQLYELLSQMKQLAQQNPEQARQLLQQNPQLAYALFQALL 68 (84)
T ss_dssp TSHHHHHHHHHHHHHHHHC----HHHHHHHS-THHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCcHHHHHHHHHHH
Confidence 36667788888889999999999999999999 9888887753
No 138
>KOG1059|consensus
Probab=40.92 E-value=77 Score=33.54 Aligned_cols=92 Identities=10% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCCCC-C-----ChHHHHHH
Q psy15268 59 DLAEQCIKVLELICTREAGSVFEAGGLASVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-----QLPEAVEA 131 (256)
Q Consensus 59 DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-----~v~~~lP~ 131 (256)
++--.|.|++|--|+.-.. ..+.+.++|+=.- ..+.|+|+=.+++++-+.++.|....+.. + .+..++-.
T Consensus 476 eVL~AaaWi~GEyse~ven---~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~ 552 (877)
T KOG1059|consen 476 EVLYAAAWILGEYSEFVEN---PNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSF 552 (877)
T ss_pred HHHHHHHHHHHHHHHHhhC---HHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHH
Confidence 5666789999887764221 2456677776553 55788898888899999999999887665 2 24666777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH
Q psy15268 132 LSLLLRHEDTHISDAALRCFAS 153 (256)
Q Consensus 132 L~~lL~~~D~~vv~~ac~als~ 153 (256)
|.++.+++|-+|-|.|--++-+
T Consensus 553 l~qf~~s~d~EvQERA~~~~~l 574 (877)
T KOG1059|consen 553 LEQFSGSSDLEVQERASEVLEL 574 (877)
T ss_pred hhcccCccchhHHHHHHHHHHH
Confidence 7888899999999995544443
No 139
>KOG0212|consensus
Probab=40.82 E-value=4.4e+02 Score=27.41 Aligned_cols=167 Identities=15% Similarity=0.197 Sum_probs=87.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch--
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS-- 78 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~-- 78 (256)
||++.+++... .+--+|.+++--.-..... +-...-++.++.++. ++...+++-|+.-++.+-.-.|+.
T Consensus 216 ~LsD~s~eVr~-~~~t~l~~fL~eI~s~P~s-~d~~~~i~vlv~~l~-------ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 216 MLSDSSDEVRT-LTDTLLSEFLAEIRSSPSS-MDYDDMINVLVPHLQ-------SSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred HhcCCcHHHHH-HHHHHHHHHHHHHhcCccc-cCcccchhhcccccc-------CCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 46677777776 6666666665322111111 124567899999888 345788887775555554444443
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC-CCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP-QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~-~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
..-+|.+.++|..+.......-+..-+..---+.-+|....- .+..+..++..|...+.++-.+-.-.+..=+.-|-.+
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 445788888888886543321110000111012224432211 1236788999998888877444333333333333333
Q ss_pred ccCCCCCccchhc--cccHHHHHHHhc
Q psy15268 158 FTRRGVDPAPLAQ--HGLASELLIRLS 182 (256)
Q Consensus 158 ~~~~~~~i~~l~~--~glv~~Lv~LL~ 182 (256)
+ + -.+.. +.+.+.|+.-|+
T Consensus 367 ~---p---~ql~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 367 A---P---GQLLVHNDSIFLTLLKTLS 387 (675)
T ss_pred C---c---chhhhhccHHHHHHHHhhc
Confidence 2 2 22222 246666666664
No 140
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=39.20 E-value=1.8e+02 Score=30.63 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=66.5
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhc--------ccCcccchhhhhHHHHH
Q psy15268 39 MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIK--------QHGHSVHKDTLHSAMAV 110 (256)
Q Consensus 39 Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ld--------ff~~~~qr~~l~~a~~~ 110 (256)
|..+..+|. .+..|+.+|+....+-++. |+++-|=...|.++. .-...+.- .+-+|+-.
T Consensus 606 vStiL~~L~-------~k~p~vR~~aadl~~sl~~-----vlk~c~e~~~l~klg~iLyE~lge~ypEvLg-sil~Ai~~ 672 (975)
T COG5181 606 VSTILKLLR-------SKPPDVRIRAADLMGSLAK-----VLKACGETKELAKLGNILYENLGEDYPEVLG-SILKAICS 672 (975)
T ss_pred HHHHHHHhc-------CCCccHHHHHHHHHHHHHH-----HHHhcchHHHHHHHhHHHHHhcCcccHHHHH-HHHHHHHH
Confidence 345556665 4578999999999887753 444444444444442 11111111 11256666
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 111 VSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 111 vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.|.-|-..- .+-+.+++|.|.-+|.+..++|+++..--+-.|+++
T Consensus 673 I~sv~~~~~m-qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~ 718 (975)
T COG5181 673 IYSVHRFRSM-QPPISGILPSLTPILRNKHQKVVANTIALVGTICMN 718 (975)
T ss_pred Hhhhhccccc-CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc
Confidence 6665543211 135788899999999999999999998888888876
No 141
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=39.13 E-value=3.1e+02 Score=28.75 Aligned_cols=131 Identities=13% Similarity=0.204 Sum_probs=72.9
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI 92 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l 92 (256)
-+.-|+.-+++--|++-.+ |...||.-.. . ..|..+ ++..|+.+-+++|.+- .-.-...|+
T Consensus 432 ~~Vdaisd~~~~~p~skEr------aLe~LC~fIE-D-----cey~~I---~vrIL~iLG~EgP~a~----~P~~yvrhI 492 (898)
T COG5240 432 YMVDAISDAMENDPDSKER------ALEVLCTFIE-D-----CEYHQI---TVRILGILGREGPRAK----TPGKYVRHI 492 (898)
T ss_pred HHHHHHHHHHhhCchHHHH------HHHHHHHHHh-h-----cchhHH---HHHHHHHhcccCCCCC----CcchHHHHH
Confidence 3455677777777776644 4578888766 3 335555 5667776666777420 000011111
Q ss_pred cc---cCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccch
Q psy15268 93 KQ---HGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPL 168 (256)
Q Consensus 93 df---f~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l 168 (256)
-. .....-| ..|+..++..--+ ..|+ .-+.+.-+|.+.++-.|.+|.+.|-.++-.+-++ +..+++
T Consensus 493 yNR~iLEN~ivR---saAv~aLskf~ln--~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~-----da~~pl 562 (898)
T COG5240 493 YNRLILENNIVR---SAAVQALSKFALN--ISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS-----DACEPL 562 (898)
T ss_pred HHHHHHhhhHHH---HHHHHHHHHhccC--ccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh-----hhhhcc
Confidence 00 0011123 1444555544433 3554 3344445566779999999999998888766543 445566
Q ss_pred hccc
Q psy15268 169 AQHG 172 (256)
Q Consensus 169 ~~~g 172 (256)
++++
T Consensus 563 ~~sd 566 (898)
T COG5240 563 FSSD 566 (898)
T ss_pred cccc
Confidence 6663
No 142
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=39.00 E-value=77 Score=26.60 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhccCCCCCccchhccc---cHHHHHHHh
Q psy15268 124 QLPEAVEALSLLLRH-EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHG---LASELLIRL 181 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~-~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~g---lv~~Lv~LL 181 (256)
.-.+++..|-.+|+. +++.+.+.+|.++.+|.+...+.++...++.... +++.+++++
T Consensus 64 ~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~ 125 (165)
T PF08167_consen 64 HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLL 125 (165)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHH
Confidence 345666666667765 4578999999999999998877777766766553 444444444
No 143
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=37.07 E-value=3.7e+02 Score=25.42 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=58.8
Q ss_pred cCcHHHHHHhhccc-C----cccc--hhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhc-----C-----CCHHH
Q psy15268 82 AGGLASVLLFIKQH-G----HSVH--KDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLR-----H-----EDTHI 143 (256)
Q Consensus 82 ~G~l~alL~~ldff-~----~~~q--r~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~-----~-----~D~~v 143 (256)
..|+..+|.|+-.| . .+.. -..|+..|-++.-+..|..-.- +++.+.+|.+-..+- . +.-.+
T Consensus 205 D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 205 DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 35777788777543 1 1111 2335567777777877754333 489999999875541 1 12368
Q ss_pred HHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHh
Q psy15268 144 SDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 144 v~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL 181 (256)
.+.|...+++|++.|.... .++-+|+.+-|
T Consensus 285 Rd~AA~ll~~i~~~f~~~y--------~~l~~ri~~tl 314 (343)
T cd08050 285 RDYAARLLAQICRKFSTSY--------NTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHHHHHHHcCCCC--------CcHHHHHHHHH
Confidence 9999999999999986432 34555665444
No 144
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=36.62 E-value=2.8e+02 Score=24.00 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCCCC---CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 108 MAVVSRLCSKMEPQD---PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 108 ~~~vsNlCr~~~~~~---~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+-.++-++.+-|-.. ..+.+++..+..++.|.|++|...+..|+.-+..-.
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 335555665554443 378999999999999999999999999999988653
No 145
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=35.15 E-value=97 Score=26.96 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=63.4
Q ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchh--hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCC
Q psy15268 40 KAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSV--FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK 117 (256)
Q Consensus 40 p~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~V--l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~ 117 (256)
|.|++-|. -.+..|-..+.|+.|-..-...| +..|+-.-+..||-.-...-+. +|+.+...+=..
T Consensus 6 plLIsCL~---------~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~~----kA~~IF~~L~~~ 72 (174)
T PF04510_consen 6 PLLISCLT---------MQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEPV----KAFHIFICLPMP 72 (174)
T ss_pred HHHHHHHH---------hhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccchH----HHHHHHHhCCch
Confidence 56666665 34455556788888877766655 5889999999888654434445 788877755422
Q ss_pred CCCCCC---ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 118 MEPQDP---QLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 118 ~~~~~~---~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
. -.++ .++..+|-..+.|.+.-. .+.-||+++-.
T Consensus 73 l-~~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LAl~ 109 (174)
T PF04510_consen 73 L-YGEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLALT 109 (174)
T ss_pred h-hhhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHHHH
Confidence 2 1222 567777777777765533 55666766553
No 146
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.00 E-value=1.5e+02 Score=24.47 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=54.5
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHH-HHHHhc
Q psy15268 110 VVSRLCSKMEPQDPQLPEAVEALSLLLRH-EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASE-LLIRLS 182 (256)
Q Consensus 110 ~vsNlCr~~~~~~~~v~~~lP~L~~lL~~-~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~-Lv~LL~ 182 (256)
.+-.+|-.++..+..-++++-.|...|++ .+++++-.|+.-+-.++.+.- ...-+++++.+++.. |++++.
T Consensus 21 ~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG--~~fh~eiask~Fl~e~L~~~i~ 93 (141)
T cd03565 21 LNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG--HRFHVLVAKKDFIKDVLVKLIN 93 (141)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHhhhHHHHHHHc
Confidence 44567877665445889999999999985 699999888887777776641 234567788899998 999995
No 147
>KOG1222|consensus
Probab=34.97 E-value=1.5e+02 Score=30.35 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcCcHHHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAGGLASVLL 90 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G~l~alL~ 90 (256)
|.--.|.|+.=---+.. .|.-+..-||-+-.+|.-.+. -.|+.=|.+-++|-.|+|.. ...-++|.+.+++.
T Consensus 524 EClGtlanL~v~dldw~-~ilq~~~LvPw~k~~L~pga~-----eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlie 597 (791)
T KOG1222|consen 524 ECLGTLANLKVTDLDWA-KILQSENLVPWMKTQLQPGAD-----EDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIE 597 (791)
T ss_pred HHHHHHhhcccCCCCHH-HHHhhccccHHHHHhhcCCcc-----chhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHH
Confidence 55556666554334455 456688889999999984443 56899999999999999843 34456778777777
Q ss_pred hh
Q psy15268 91 FI 92 (256)
Q Consensus 91 ~l 92 (256)
++
T Consensus 598 LL 599 (791)
T KOG1222|consen 598 LL 599 (791)
T ss_pred HH
Confidence 76
No 148
>KOG2973|consensus
Probab=34.35 E-value=1.1e+02 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE 75 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~ 75 (256)
||...+|+... .|.+-+.++-.. +-+. -.--..-.++.+.+++. .. +=+||+..+|.|.|.+.
T Consensus 11 ll~~~sP~v~~-~AV~~l~~lt~~-~~~~-~~~~~~~~lk~l~qL~~-~~--------~~~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 11 LLHSLSPPVRK-AAVEHLLGLTGR-GLQS-LSKYSEALLKDLTQLLK-DL--------DPAEPAATALVNLSQKE 73 (353)
T ss_pred HhccCChHHHH-HHHHHHhhcccc-chhh-hccchhhhHHHHHHHcc-Cc--------ccccHHHHHHHHHHhhH
Confidence 56677887777 777766666554 2222 10112334777888666 32 22999999999999986
No 149
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=34.30 E-value=3.1e+02 Score=29.43 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=80.4
Q ss_pred hhcCcHHHHHHhhcccCc-ccchhhhhHHHHHHHHhcCCCCCCCC------ChHHHHHHHHHhhcCCC----HHHHHHHH
Q psy15268 80 FEAGGLASVLLFIKQHGH-SVHKDTLHSAMAVVSRLCSKMEPQDP------QLPEAVEALSLLLRHED----THISDAAL 148 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~-~~qr~~l~~a~~~vsNlCr~~~~~~~------~v~~~lP~L~~lL~~~D----~~vv~~ac 148 (256)
-+.|||..+|..|+-... ..-|..+...+-++.-||.= +..-. .+.-.|-.|...++.+. .++.|...
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 358999999999985431 22356666777777767642 11111 34445555555556655 67888777
Q ss_pred HHHHHhhhhccCCC--CCccchhcc-------ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchH
Q psy15268 149 RCFASLSDRFTRRG--VDPAPLAQH-------GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSV 219 (256)
Q Consensus 149 ~als~L~d~~~~~~--~~i~~l~~~-------glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 219 (256)
..+-.|..--.... ......-.. .-+.-+++.|.+ .. ...+++..
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s-~~-------------------------~r~~~~i~ 246 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNS-PF-------------------------VRSNPQIL 246 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcC-cc-------------------------ccCCHHHH
Confidence 77766664332111 111111111 123333343321 11 22456778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc
Q psy15268 220 STIVSLLSALCRGSPSITSDLLHS 243 (256)
Q Consensus 220 ~~~l~~Ls~l~~~S~~it~~Ll~~ 243 (256)
..+.|+|-.|+.|.++....|++.
T Consensus 247 ~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 247 QALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHhhHHhcCCHHHHHHHHHH
Confidence 899999999999999999988864
No 150
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.11 E-value=83 Score=31.34 Aligned_cols=48 Identities=29% Similarity=0.151 Sum_probs=28.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 134 LLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 134 ~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++|.|=|...+.|....+.. +|......+-++-+.+.+++++|+.+|.
T Consensus 25 ~llkHI~~~~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~ 72 (475)
T PF04499_consen 25 NLLKHIDTPAIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLS 72 (475)
T ss_pred HHHHhcCCcHHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhC
Confidence 33444443333333333333 4544334456777888999999999996
No 151
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.89 E-value=2.4e+02 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhccccchhhhcCcHHHHHHhhc
Q psy15268 60 LAEQCIKVLELICTREAGSVFEAGGLASVLLFIK 93 (256)
Q Consensus 60 laEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ld 93 (256)
..||.-|+-.| ...+.+.||+.++...|.
T Consensus 98 ~~~ql~~i~~N-----~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 98 EEEQLQWIRRN-----VFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHH-----HHHHHHhhhhHHHHHHHH
Confidence 34454444433 345667777777777774
No 152
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=32.10 E-value=1.6e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 124 QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
...+.+|.+..+|++....-+.-+|..+-.+.+.|.
T Consensus 66 ~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 66 LCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999983
No 153
>KOG0414|consensus
Probab=30.82 E-value=4.3e+02 Score=29.63 Aligned_cols=148 Identities=21% Similarity=0.239 Sum_probs=101.2
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGG 84 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~ 84 (256)
.+|++|. .|.=||.-+|-.+.+.... ..|.|..-+. .++.+-+.--++=+||-.+-+.|..+=..
T Consensus 935 sdp~Lq~-AAtLaL~klM~iSa~fces------~l~llftime------ksp~p~IRsN~VvalgDlav~fpnlie~~-- 999 (1251)
T KOG0414|consen 935 SDPELQA-AATLALGKLMCISAEFCES------HLPLLFTIME------KSPSPRIRSNLVVALGDLAVRFPNLIEPW-- 999 (1251)
T ss_pred CCHHHHH-HHHHHHHHHhhhhHHHHHH------HHHHHHHHHh------cCCCceeeecchheccchhhhcccccchh--
Confidence 4688888 8889999999888887743 4588877665 45577788888888888888777532211
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCC
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVD 164 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~ 164 (256)
-..+..-+..-+..++| +|+-+++++--+-- -.|+.-++-....|.-+|++|.+-|=.=|--|+.+.
T Consensus 1000 T~~Ly~rL~D~~~~vRk----ta~lvlshLILndm---iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~------ 1066 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRK----TALLVLSHLILNDM---IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG------ 1066 (1251)
T ss_pred hHHHHHHhcCccHHHHH----HHHHHHHHHHHhhh---hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc------
Confidence 12233334444667788 99999999874421 268888888888888888888877765555555432
Q ss_pred ccchhccccHHHHHHHhcc
Q psy15268 165 PAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 165 i~~l~~~glv~~Lv~LL~~ 183 (256)
..+. +++|.++..|++
T Consensus 1067 -n~iy--nlLPdil~~Ls~ 1082 (1251)
T KOG0414|consen 1067 -NTIY--NLLPDILSRLSN 1082 (1251)
T ss_pred -cchh--hhchHHHHhhcc
Confidence 2233 566777777654
No 154
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=30.48 E-value=1.4e+02 Score=29.88 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=68.9
Q ss_pred ccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhccCCCCCccchhcc
Q psy15268 94 QHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLR-HEDTHISDAALRCFASLSDRFTRRGVDPAPLAQH 171 (256)
Q Consensus 94 ff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~-~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~ 171 (256)
.|...++| .-...+-.+|+..|.-- ..-++++..+.+.-+ +.-.++....||++---..+..+ .-+..
T Consensus 279 ~y~~eV~r----vlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d------~rct~ 348 (459)
T PF14764_consen 279 QYQAEVRR----VLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYD------RRCTV 348 (459)
T ss_pred hHHHHHHH----HHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccC------CccCH
Confidence 44566777 66677778997753322 256777777766643 34578999999999755444221 22222
Q ss_pred ccHHHHHHHhcc--cCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 172 GLASELLIRLSN--AAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 172 glv~~Lv~LL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
+.+.+.-+-|.- -.-+|. .. ..++..+..++..+..++..|+.||+-|+++.-.
T Consensus 349 ~~i~~~fE~LE~llyE~~~~--~~------------~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pR 404 (459)
T PF14764_consen 349 EQINEFFEALEALLYEVTQS--RR------------DPSASRPSSQPRLMTVLMTALAKLASRSQDLIPR 404 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cc------------cccccCCCCchhHHHHHHHHHHHHHHhCHhhhHH
Confidence 222222222210 000000 00 0011124466788999999999999999987643
No 155
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.83 E-value=79 Score=24.49 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=50.9
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHH
Q psy15268 111 VSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180 (256)
Q Consensus 111 vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~L 180 (256)
+-.+|.-....+...++++..|...|.+.+++++-.|...+-+++.... +...+.+.+..++.++++.
T Consensus 21 i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g--~~f~~~i~~~~~~~~l~~~ 88 (115)
T cd00197 21 IMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG--ERFHQEVASNDFAVELLKF 88 (115)
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc--HHHHHHHHHhHHHHHHHHh
Confidence 3445554433334788999999999999999999999999999998752 2344556677777777765
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.82 E-value=69 Score=26.10 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHhh-cCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 126 PEAVEALSLLL-RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 126 ~~~lP~L~~lL-~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
-+++-.|.++| .++|+.++.-||-=+..++.-. |+....+-+.|.=.++++|+.+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~---p~gr~ii~~lg~K~~vM~Lm~h 97 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY---PNGRNIIEKLGAKERVMELMNH 97 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC---hhHHHHHHhcChHHHHHHHhcC
Confidence 34566666777 4569999999999999999764 4455555566999999999975
No 157
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=28.44 E-value=4.2e+02 Score=23.42 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=51.6
Q ss_pred CcHHHHHHhhc------ccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh-cCCCHHHHHHHHHHHHHhh
Q psy15268 83 GGLASVLLFIK------QHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL-RHEDTHISDAALRCFASLS 155 (256)
Q Consensus 83 G~l~alL~~ld------ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL-~~~D~~vv~~ac~als~L~ 155 (256)
|.+.++|.+.+ +-+...+....-...+.+...|+..|. .-.+.++.++.+| +++|+.+...+.-++..++
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 56666666622 112223333333455677889987654 8899999999999 7889999999999999999
Q ss_pred hh
Q psy15268 156 DR 157 (256)
Q Consensus 156 d~ 157 (256)
++
T Consensus 151 ~~ 152 (234)
T PF12530_consen 151 EA 152 (234)
T ss_pred HH
Confidence 65
No 158
>KOG1991|consensus
Probab=28.12 E-value=8.1e+02 Score=27.03 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHHHHHHh-ccccchhhhcCcHHHHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCCCC----CChHHH
Q psy15268 55 RTSKDLAEQCIKVLELIC-TREAGSVFEAGGLASVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEPQD----PQLPEA 128 (256)
Q Consensus 55 ~~~~DlaEQal~aLe~Is-~d~~~~Vl~~G~l~alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~~~----~~v~~~ 128 (256)
+++.-+.-+|.|.++.+| -|.++...-..++.....-+. .....++- .|.-++.-+-++-+..+ ++|++.
T Consensus 473 s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~V----eAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 473 SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRV----EAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhh----HHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 446678888999999988 556655444445555555444 22334444 34444444444433333 256666
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHH
Q psy15268 129 VEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLI 179 (256)
Q Consensus 129 lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~ 179 (256)
+.-|-.+.+.-+.+.+..+.- .+++.| +|.+.+.+ .|++.+|.+
T Consensus 549 mq~lL~L~ne~End~Lt~vme---~iV~~f---seElsPfA-~eL~q~La~ 592 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDDLTNVME---KIVCKF---SEELSPFA-VELCQNLAE 592 (1010)
T ss_pred HHHHHHHHHhcchhHHHHHHH---HHHHHH---HHhhchhH-HHHHHHHHH
Confidence 666656655555555554443 345566 34566665 355555544
No 159
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.70 E-value=1.2e+02 Score=23.63 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhhcCCC----HHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 125 LPEAVEALSLLLRHED----THISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 125 v~~~lP~L~~lL~~~D----~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
...++..+.+++.... .+++..+..|+.....- -.++.+.++++++.+.++|.
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-----~~~~~i~~~~~l~~~~~~l~ 136 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISW-----IPIELIINSNLLNLIFQLLQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-----S-HHHHHSSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-----CCHHHhccHHHHHHHHHHcC
Confidence 5677888888776543 88999999999998863 46888999999999999994
No 160
>KOG2199|consensus
Probab=27.28 E-value=1.4e+02 Score=29.56 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=52.7
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 109 AVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 109 ~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
..+--.|-.+...+..-++++-.|...|+|.|++|+=.|+.-+-.++.+... -.-.+|....+...|-.|+.+
T Consensus 27 ~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~--~~r~EVsSr~F~~el~al~~~ 99 (462)
T KOG2199|consen 27 SLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGK--RFRLEVSSRDFTTELRALIES 99 (462)
T ss_pred HHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch--HHHHHHhhhhHHHHHHHHHhh
Confidence 3556789888665568899999999999999999987766655555554321 223456666788888888753
No 161
>KOG3665|consensus
Probab=26.60 E-value=7.7e+02 Score=25.90 Aligned_cols=226 Identities=13% Similarity=0.088 Sum_probs=123.6
Q ss_pred HHHHHHHHHhccCchhh--hHHHHhCCcHHHHHHHhhcccCCCC-CCcHHHHHH-HHHHHHHHhccccchhhhcCcHHHH
Q psy15268 13 VTARAMTYYLDVSAECT--RRIVAIDGAMKAICSRLSLGAGIAS-RTSKDLAEQ-CIKVLELICTREAGSVFEAGGLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t--~~ivv~~gAVp~L~~~L~~~i~~~~-~~~~DlaEQ-al~aLe~Is~d~~~~Vl~~G~l~al 88 (256)
...+-++......+.+- ....+..|..+.....+. .+..-. ....+.-|- ++|..-+..-+.....++.||+..+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~ 518 (699)
T KOG3665|consen 440 NIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLL-RIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLL 518 (699)
T ss_pred hhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHH-HHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHH
Confidence 34455555555555431 111346677777666554 221111 111222121 3333333333344579999999999
Q ss_pred HHhhcccC-cccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHH--HHHHhhcCCC-HHHHHHHHHHHHHhhhhccCCCC
Q psy15268 89 LLFIKQHG-HSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVE--ALSLLLRHED-THISDAALRCFASLSDRFTRRGV 163 (256)
Q Consensus 89 L~~ldff~-~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP--~L~~lL~~~D-~~vv~~ac~als~L~d~~~~~~~ 163 (256)
+..++-|. -..|+ +++-++.|++...+-.+ ....+..- .+..++..-| .+..-.|+-.++-+.-.. ++
T Consensus 519 ~~~l~~f~~~~~~~----~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~---~~ 591 (699)
T KOG3665|consen 519 FKCLESFDNEELHR----KILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSDS---EK 591 (699)
T ss_pred HHHHhhccchhHHH----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCC---Cc
Confidence 99999663 45677 89999999998764444 24444444 5555555444 477777777777766442 23
Q ss_pred CccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhc
Q psy15268 164 DPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHS 243 (256)
Q Consensus 164 ~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~ 243 (256)
..+......+-+.+++....-...+-. --....-.|. -..-.+.+.++++..-.+-.+..++...++..+.+.++
T Consensus 592 ~~~~~~r~~~~~~l~e~i~~~~~~~~~-~~~~~~f~~~----~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~ 666 (699)
T KOG3665|consen 592 TTECVFRNSVNELLVEAISRWLTSEIR-VINDRSFFPR----ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRES 666 (699)
T ss_pred CccccchHHHHHHHHHHhhccCcccee-ehhhhhcchh----HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhc
Confidence 555555555666666666432110000 0000000010 00001234566788888888999999999877777777
Q ss_pred ChHHHHhh
Q psy15268 244 DLPDAIGC 251 (256)
Q Consensus 244 ~l~~~l~~ 251 (256)
+.-..++.
T Consensus 667 ~~~~~~~~ 674 (699)
T KOG3665|consen 667 NGFELIEN 674 (699)
T ss_pred cchhhhhh
Confidence 75444443
No 162
>KOG2081|consensus
Probab=26.40 E-value=3.5e+02 Score=27.74 Aligned_cols=155 Identities=17% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHhccCchhhhHHHH-------------hCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc--ccc-chh
Q psy15268 16 RAMTYYLDVSAECTRRIVA-------------IDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT--REA-GSV 79 (256)
Q Consensus 16 raLTni~~~~p~~t~~ivv-------------~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~--d~~-~~V 79 (256)
|++-+++.+.||.++..-. .+-.++.++..|.-..+-++.+..|.-||++++++-=.+ ..+ +.|
T Consensus 115 ~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v 194 (559)
T KOG2081|consen 115 PILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQV 194 (559)
T ss_pred HHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHH
Q ss_pred hhc-CcHHHHHHhhcccCcccchhhhhHHHHHH---------HHhcCCCCCCCCChHHHHHHHHHh-hcCCCHHHHHHHH
Q psy15268 80 FEA-GGLASVLLFIKQHGHSVHKDTLHSAMAVV---------SRLCSKMEPQDPQLPEAVEALSLL-LRHEDTHISDAAL 148 (256)
Q Consensus 80 l~~-G~l~alL~~ldff~~~~qr~~l~~a~~~v---------sNlCr~~~~~~~~v~~~lP~L~~l-L~~~D~~vv~~ac 148 (256)
+.. -=+.....-++ ....+- .|+-.+ .--|+..++.-+....++|..-++ ..++|.+-.+..|
T Consensus 195 ~a~~pLi~l~F~sl~--~~~lhe----~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~ 268 (559)
T KOG2081|consen 195 LASFPLITLAFRSLS--DDELHE----EATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAIC 268 (559)
T ss_pred HhhhHHHHHHHHHcc--cchhhH----HHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHH
Q ss_pred HHHHHhhhhccCCCCCccchhccccHHHHHHHh
Q psy15268 149 RCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 149 ~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL 181 (256)
+-|..++|.| ..+...+.+---+++++|
T Consensus 269 RIFtel~eaf-----~~~i~~np~~~l~~vell 296 (559)
T KOG2081|consen 269 RIFTELGEAF-----VVLISTNPEEFLRIVELL 296 (559)
T ss_pred HHHHHHHHHH-----HHHHhhCCCcchhHHHHH
No 163
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.38 E-value=5.4e+02 Score=29.52 Aligned_cols=126 Identities=10% Similarity=0.192 Sum_probs=70.5
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh-
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE- 81 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~- 81 (256)
.+.++..+- .++-...++........+ ...|-.|+.+.. . . ...++ .-|+.+|-.++..++..+..
T Consensus 445 ~S~e~~v~~-FG~~~Y~~lF~~fds~~q-----qeVv~~Lvthi~-s-g----~~~ev-~~aL~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 445 RSKEPSVRE-FGSHLYKYLFKEFDSYCQ-----QEVVGALVTHIG-S-G----NSQEV-DAALDVLCELAEKNPSELQPF 511 (1426)
T ss_dssp TSSSHHHHH-HHHHHHHHHHHSS-HHHH-----HHHHHHHHHHHH-H-------HHHH-HHHHHHHHHHHHH-HHHHHHT
T ss_pred hCCCHHHHH-HHHHHHHHHHhhccchhH-----HHHHHHHHHHHc-C-C----cHHHH-HHHHHHHHHHHhccHHHHHHH
Confidence 344444444 666666666666643222 123455665553 1 1 12233 46799999999988876554
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHH-HHhhcCCCHHHHH
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEAL-SLLLRHEDTHISD 145 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L-~~lL~~~D~~vv~ 145 (256)
+.-+..+|.|+|.++..--| ..+.+++.++...+.....+++=+-.+ ..-|.+.+.+.--
T Consensus 512 a~~l~giLD~l~~Ls~~qiR----~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 512 ATFLKGILDYLDNLSLQQIR----KLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHHGGGGGGGG--HHHHH----HHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHH----HHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 45567788999987665556 788888888865533333555555444 4447777766544
No 164
>KOG1078|consensus
Probab=26.16 E-value=1.3e+02 Score=32.10 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVF 80 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl 80 (256)
|-.++++.||||+++++-..+++.... ||.+|.-.|. ++..-+.=-|+.+|-++|.-+|..|-
T Consensus 256 ~K~emV~~EaArai~~l~~~~~r~l~p------avs~Lq~fls-------sp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 256 HKSEMVIYEAARAIVSLPNTNSRELAP------AVSVLQLFLS-------SPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred chhHHHHHHHHHHHhhccccCHhhcch------HHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 346889999999999999888876633 5555554333 44567777899999999998886543
No 165
>KOG1991|consensus
Probab=26.00 E-value=2.4e+02 Score=30.85 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccC-chhhhHHHHhCCcHHHHHHHhhcccCC-CCCCcHHHHHHHHHHHHHHhcc----cc-chhhhcCcH
Q psy15268 13 VTARAMTYYLDVS-AECTRRIVAIDGAMKAICSRLSLGAGI-ASRTSKDLAEQCIKVLELICTR----EA-GSVFEAGGL 85 (256)
Q Consensus 13 ~AaraLTni~~~~-p~~t~~ivv~~gAVp~L~~~L~~~i~~-~~~~~~DlaEQal~aLe~Is~d----~~-~~Vl~~G~l 85 (256)
.|..+|+-+...= .+. =.|.++.+.+-|.+.-+= .+....--.|-|+.++|.|+.- .| +..++.=.+
T Consensus 391 Aa~~~l~~~~~KR~ke~------l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET------LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhh------hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 4555666655432 111 234455555544411110 1233455678889999988732 11 122222222
Q ss_pred HHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhccCCCC
Q psy15268 86 ASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLR-HEDTHISDAALRCFASLSDRFTRRGV 163 (256)
Q Consensus 86 ~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~-~~D~~vv~~ac~als~L~d~~~~~~~ 163 (256)
.-+...+....-+.+- .|.|+++..|.- +-+|+ ...+++..-.+.|. ..+-.|.-.|..|+..+...-...++
T Consensus 465 ~hVfP~f~s~~g~Lra----rac~vl~~~~~~-df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRA----RACWVLSQFSSI-DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHhhHhhcCchhHHHH----HHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 2222222211123344 799999988843 34454 77888877766665 66777888888888888766433334
Q ss_pred CccchhccccHHHHHHHh
Q psy15268 164 DPAPLAQHGLASELLIRL 181 (256)
Q Consensus 164 ~i~~l~~~glv~~Lv~LL 181 (256)
++.+.+ .+++++|+.|.
T Consensus 540 ~~~~hv-p~~mq~lL~L~ 556 (1010)
T KOG1991|consen 540 KVSAHV-PPIMQELLKLS 556 (1010)
T ss_pred hHhhhh-hHHHHHHHHHH
Confidence 344433 24444444443
No 166
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=25.44 E-value=5.9e+02 Score=24.16 Aligned_cols=136 Identities=12% Similarity=0.040 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhccCchhhhHHHHhCC-cHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---------h
Q psy15268 9 NVLEVTARAMTYYLDVSAECTRRIVAIDG-AMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---------S 78 (256)
Q Consensus 9 ~~l~~AaraLTni~~~~p~~t~~ivv~~g-AVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---------~ 78 (256)
++. |+-.++.+++.-.|+.... +.+ =+|.+...+. .+..++..+|+..++.++..-+. .
T Consensus 150 i~~-erL~i~~~ll~q~p~~M~~---~~~~W~~~l~~~l~-------~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~ 218 (372)
T PF12231_consen 150 IIS-ERLNIYKRLLSQFPQQMIK---HADIWFPILFPDLL-------SSAKDIRTKAISLLLEAKKCLGPNKELSKSVLE 218 (372)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh-------hcchHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 344 8888999999988887622 333 4788888787 23678999888888777643221 1
Q ss_pred hhhcCcHHH---------HHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHH
Q psy15268 79 VFEAGGLAS---------VLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAAL 148 (256)
Q Consensus 79 Vl~~G~l~a---------lL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac 148 (256)
+++..-... +-.+++.-....+- + .++..+.-+-|+..-.. .++.+.+.....-.++.|+.+...|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a--~-~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~ 295 (372)
T PF12231_consen 219 DLQRSLENGKLIQLYCERLKEMIKSKDEYKLA--M-QIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAF 295 (372)
T ss_pred HhccccccccHHHHHHHHHHHHHhCcCCcchH--H-HHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHH
Confidence 222221111 11111110111111 1 23333444555433333 48999999998889999999999999
Q ss_pred HHHHHhhhhc
Q psy15268 149 RCFASLSDRF 158 (256)
Q Consensus 149 ~als~L~d~~ 158 (256)
.|+-++++..
T Consensus 296 ~aW~~liy~~ 305 (372)
T PF12231_consen 296 KAWRRLIYAS 305 (372)
T ss_pred HHHHHHHHHh
Confidence 9999999854
No 167
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.24 E-value=1.1e+02 Score=22.89 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=45.3
Q ss_pred CcHHHHHHhhcccCcccchh---hhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 83 GGLASVLLFIKQHGHSVHKD---TLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~---~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+.+..+.+|+|+.....+.. .++.|+-..+.+.+.....+..+.-+-..+.---...|...+..+...++.+-.
T Consensus 16 ~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 16 EALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 45667788888775554432 455665556666665533333333333333333567899999999998888754
No 168
>KOG1240|consensus
Probab=24.63 E-value=5e+02 Score=29.46 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=69.4
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++=.-.+..|++-|. +++.-+ +|+..+.-|-+.. .|+ .+..++|.+..++.-.+++|...|..++..+..
T Consensus 420 a~l~vs~lts~IR~lk--~~~tK~----~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~ 491 (1431)
T KOG1240|consen 420 AVLFVSVLTSCIRALK--TIQTKL----AALELLQELSTYI--DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLA 491 (1431)
T ss_pred eeeeHHHHHHHHHhhh--cchhHH----HHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 3444445666666665 344445 8888888777765 444 899999999999999999999999999999987
Q ss_pred hccCCCCCccc-hhccccHHHHHHHhcc
Q psy15268 157 RFTRRGVDPAP-LAQHGLASELLIRLSN 183 (256)
Q Consensus 157 ~~~~~~~~i~~-l~~~glv~~Lv~LL~~ 183 (256)
..++-+ ..++ ++-.=++|.|-.|+..
T Consensus 492 ~Vr~~~-~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 492 LVRDIP-PSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hccCCC-cccchhhHhhhhhhhHhhhcc
Confidence 665333 2333 3333478888888853
No 169
>KOG0567|consensus
Probab=24.20 E-value=67 Score=30.00 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=31.7
Q ss_pred CCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 36 DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 36 ~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
.-|||.|.+.|.++-| ..=+.--|..|||-|+++..-.||+
T Consensus 217 ~~ai~~L~k~L~d~~E-----~pMVRhEaAeALGaIa~e~~~~vL~ 257 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETE-----HPMVRHEAAEALGAIADEDCVEVLK 257 (289)
T ss_pred hhhhHHHHHHHHhhhc-----chHHHHHHHHHHHhhcCHHHHHHHH
Confidence 4469999999984445 5668889999999999987655554
No 170
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=24.08 E-value=5.1e+02 Score=27.63 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHH-HHHHHHHh
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPE-AVEALSLL 135 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~-~lP~L~~l 135 (256)
+..++--|+.+|+.| +..=+-...+.++.+.++....-+-| +|.-.+.++-|-.+. -.... ..-++..+
T Consensus 105 N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk----~Aalav~kly~ld~~--l~~~~g~~~~l~~l 174 (757)
T COG5096 105 NEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRK----TAALAVAKLYRLDKD--LYHELGLIDILKEL 174 (757)
T ss_pred CHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHHHHhcCHh--hhhcccHHHHHHHH
Confidence 556666666666665 11112223445555555544444445 899999999864311 12222 45667777
Q ss_pred hcCCCHHHHHHHHHHHHHhhhh
Q psy15268 136 LRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 136 L~~~D~~vv~~ac~als~L~d~ 157 (256)
+.-+||.|+..|..++.-+-+.
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh
Confidence 8899999999999999887654
No 171
>KOG1242|consensus
Probab=24.05 E-value=2.7e+02 Score=28.60 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=84.1
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHh
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG--SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRL 114 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~--~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNl 114 (256)
+-.|.+-++|. . . +.|---|..-.+++-...|.. .-.-...+.-++.-+|-.+..+|| ++++|
T Consensus 55 ~l~~~~~~~l~-~-----~-~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~--------~~~~~ 119 (569)
T KOG1242|consen 55 NLKPCFEQRLN-S-----L-HNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQR--------AVSTC 119 (569)
T ss_pred HHHHHHHHHhc-c-----c-hhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHH--------HHHHH
Confidence 44688888887 2 2 344444555555555444331 122234456677777777778888 77777
Q ss_pred cCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 115 CSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 115 Cr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-+.+...- .....+++-+-+++...+..-...+-+.+.++..|+ .++.+.+.+++..+..-+.
T Consensus 120 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-----~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 120 LPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-----GIESLKEFGFLDNLSKAII 184 (569)
T ss_pred hhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-----HHhhhhhhhHHHHHHHHhc
Confidence 76553333 378889999999999889999999999999999775 3555556666666665554
No 172
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=24.02 E-value=4.7e+02 Score=23.66 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=57.0
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
.+++.+.+.|. .....+.-++.+.|+.+-... .+.++..++......+.+ .|...+.
T Consensus 43 ~~~~~~~~~l~-------~~~~~vr~~aa~~l~~~~~~~--------av~~l~~~l~d~~~~vr~----~a~~aLg---- 99 (335)
T COG1413 43 EAADELLKLLE-------DEDLLVRLSAAVALGELGSEE--------AVPLLRELLSDEDPRVRD----AAADALG---- 99 (335)
T ss_pred hhHHHHHHHHc-------CCCHHHHHHHHHHHhhhchHH--------HHHHHHHHhcCCCHHHHH----HHHHHHH----
Confidence 35666666554 225677778888877764432 234444444433333333 4444222
Q ss_pred CCCCCCCChHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhh
Q psy15268 117 KMEPQDPQLPEAVEALSLLLR-HEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 117 ~~~~~~~~v~~~lP~L~~lL~-~~D~~vv~~ac~als~L~d~ 157 (256)
+. .-++.+|.|..++. +.|..|...+-+++.++-+.
T Consensus 100 ~~-----~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 100 EL-----GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred cc-----CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 21 33567777777777 58899999999999998875
No 173
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.89 E-value=1.7e+02 Score=26.87 Aligned_cols=60 Identities=20% Similarity=0.059 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccC----CCCCcc-------chhccccHHHHHHHhcc
Q psy15268 124 QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTR----RGVDPA-------PLAQHGLASELLIRLSN 183 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~----~~~~i~-------~l~~~glv~~Lv~LL~~ 183 (256)
.=+..+-.+.+-|.+.|....-.|+.|+.|++-|--. ..++++ .+.+.|.++.++++|..
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555666666778889999999999999999987421 123333 36677899999999963
No 174
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.26 E-value=3.5e+02 Score=21.05 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=47.0
Q ss_pred CcHHHHHHhhccc-CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 83 GGLASVLLFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 83 G~l~alL~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+.+..+|.++... ....-.|.--.+.-+++-++.+.+-.+..+...+..+.+-....+. ...+..|+..+....
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3455666666532 2111113333778888999998877766777766665554444433 588999999999765
No 175
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.67 E-value=1.4e+02 Score=22.45 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh
Q psy15268 55 RTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI 92 (256)
Q Consensus 55 ~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l 92 (256)
.++.|+.|..+.++.+|-..++..+ ++| -..++.-+
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i-~SG-W~~if~il 64 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENI-KSG-WKVIFSIL 64 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHH-Hhc-cHHHHHHH
Confidence 3467777777777777766554333 333 34444433
No 176
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.34 E-value=1.3e+02 Score=25.02 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcH
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGL 85 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l 85 (256)
..|-.. .+..+++.++-|.|+-...+....|-.+.+..+.. . +.....+. ..+||.|+.=+.+.--+....
T Consensus 56 ~~d~~i-~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~-~----~~~~~~~~---~~~lell~aAc~d~~~r~~I~ 126 (157)
T PF11701_consen 56 EMDSLI-IAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS-R----KSKDRKVQ---KAALELLSAACIDKSCRTFIS 126 (157)
T ss_dssp HCCHHH-HHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH------CTS-HHHH---HHHHHHHHHHTTSHHHHHCCH
T ss_pred cchhHH-HHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh-c----ccCCHHHH---HHHHHHHHHHHccHHHHHHHH
Confidence 345566 89999999999999999887778888988887554 1 12233343 455666655433332333333
Q ss_pred HHHHHhh
Q psy15268 86 ASVLLFI 92 (256)
Q Consensus 86 ~alL~~l 92 (256)
.-++.++
T Consensus 127 ~~~~~~L 133 (157)
T PF11701_consen 127 KNYVSWL 133 (157)
T ss_dssp HHCHHHH
T ss_pred HHHHHHH
Confidence 3333444
No 177
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.07 E-value=2.2e+02 Score=29.87 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhccc
Q psy15268 124 QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNA 184 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~ 184 (256)
.|.+.+-++-+-+.+.|++|.-..|..+..++|... -|+...-.|++.+|.+++-.+
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~----eIDe~l~N~L~ekl~~R~~DR 144 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR----EIDEVLANGLLEKLSERLFDR 144 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHhcc
Confidence 577777777777789999999999999999999864 366666678888888877543
No 178
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=20.55 E-value=59 Score=28.00 Aligned_cols=74 Identities=8% Similarity=0.125 Sum_probs=26.0
Q ss_pred hhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcC----CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHH
Q psy15268 101 KDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRH----EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLAS 175 (256)
Q Consensus 101 r~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~----~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~ 175 (256)
+++.+.+.-.+...|++- +.. ..+.+-++.+...+.. .|-.. +++ + ++-|+++++-...+.+.. ++
T Consensus 75 ~~l~~~~~~lL~~f~~~n-~~NQ~~l~~~~~~l~~~~~~~~~~~~~~~-~d~---l---~~i~~dN~~L~~~i~e~~-I~ 145 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGN-RENQKYLFKHLDFLISIFMQLQIGYGLGA-LDV---L---TEIFRDNPELCESISEEH-IE 145 (207)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH-----HHCCCH-TTHHH-HHH---H---HHHHTT---------------
T ss_pred HHHHHHHHHHHHHHHHhC-HHHHHHHHHHHhHHHHHHHHhhccCCchH-HHH---H---HHHHHCcHHHHHHhhHHH-HH
Confidence 356668899999999983 444 3777777755333222 22222 222 2 233444567777776554 89
Q ss_pred HHHHHhcc
Q psy15268 176 ELLIRLSN 183 (256)
Q Consensus 176 ~Lv~LL~~ 183 (256)
.++++|..
T Consensus 146 ~~i~ll~~ 153 (207)
T PF01365_consen 146 KFIELLRK 153 (207)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99999864
Done!